BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780313|ref|YP_003064726.1| ribosomal RNA
methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str.
psy62]
         (227 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039990|gb|ACT56786.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 227

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE
Sbjct: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL
Sbjct: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL
Sbjct: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK
Sbjct: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227


>gi|315122262|ref|YP_004062751.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495664|gb|ADR52263.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 242

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/227 (85%), Positives = 210/227 (92%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           MVK  G SSRRGL QKVKN SCQ SS  WL+RHINDPYVQ+AQLEGWRARSAYKL+QINE
Sbjct: 16  MVKLLGGSSRRGLIQKVKNNSCQESSHRWLSRHINDPYVQQAQLEGWRARSAYKLIQINE 75

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KH+IL  +RRIVDLGS+PGSWSQVAAR+T + +N+ R+VAIDILDMEPILGVKFFKFDFL
Sbjct: 76  KHRILHPSRRIVDLGSAPGSWSQVAARMTAAKSNDIRIVAIDILDMEPILGVKFFKFDFL 135

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           DL+SWEFI QAIGGNPDLVLSDMAYPTIGHRK DHLRTMSLCEAATFFALEMLN GGDFL
Sbjct: 136 DLESWEFIHQAIGGNPDLVLSDMAYPTIGHRKTDHLRTMSLCEAATFFALEMLNEGGDFL 195

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           VKTFQGGTT DILCLLKK+FQKVIH+KP+ASRAESVEMFLLAKGF+K
Sbjct: 196 VKTFQGGTTQDILCLLKKNFQKVIHIKPMASRAESVEMFLLAKGFKK 242


>gi|15964509|ref|NP_384862.1| cell division protein [Sinorhizobium meliloti 1021]
 gi|307308457|ref|ZP_07588161.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           BL225C]
 gi|307319020|ref|ZP_07598451.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           AK83]
 gi|81635050|sp|Q92RT9|RLME_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|15073686|emb|CAC45328.1| Probable cell division protein [Sinorhizobium meliloti 1021]
 gi|306895434|gb|EFN26189.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           AK83]
 gi|306901060|gb|EFN31668.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           BL225C]
          Length = 245

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 181/228 (79%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ S R L QKVK    + SSR W+ RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKSPIGGNRSGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH+IL   +RI+DLG++PGSWSQ+AA++T S   + RV AID L+M+PI GV+F + D
Sbjct: 61  DEKHKILAGAKRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQMD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD ++ E ++QAIGG PD+VLSDMA PT GHR+ DH+RTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPEAPENLKQAIGGAPDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFK 228


>gi|227820952|ref|YP_002824922.1| putative ribosomal RNA large subunit methyltransferase J
           [Sinorhizobium fredii NGR234]
 gi|254809557|sp|C3MGQ4|RLME_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|227339951|gb|ACP24169.1| putative ribosomal RNA large subunit methyltransferase J
           [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  304 bits (779), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ S R L QKVK    + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKSPIGGNRSGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH+IL   RRI+DLG++PGSWSQ+AA++T S   + RV AID L+M+PI GV+F + D
Sbjct: 61  DEKHKILAGARRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD ++ E +++AIGG PDLVLSDMA PT GHR+ DHLRTM LCE A  FA+++L  GG 
Sbjct: 121 FLDPEAPEKLKEAIGGTPDLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F +VIHVKP +SR ESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAKGFK 228


>gi|150395598|ref|YP_001326065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium medicae
           WSM419]
 gi|189040341|sp|A6U6F0|RLME_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150027113|gb|ABR59230.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium medicae
           WSM419]
          Length = 245

 Score =  304 bits (779), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSRRG--LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M KPP  S+R G  L QKVK    + SSR W+ RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKPPVGSNRSGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH+IL   RRI+DLG++PGSWSQ+AA++T S   + RV AID L+M+ I GV F + D
Sbjct: 61  DEKHKILAGARRIIDLGAAPGSWSQIAAKVTNSTDTDPRVAAIDFLEMDAIPGVSFLQMD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E +++AIGG PD+VLSDMA PT GHR+ DH+RTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPQAPEKLKEAIGGAPDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFK 228


>gi|222084954|ref|YP_002543483.1| cell division protein [Agrobacterium radiobacter K84]
 gi|254809544|sp|B9J9U0|RLME_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|221722402|gb|ACM25558.1| cell division protein [Agrobacterium radiobacter K84]
          Length = 239

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 180/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKP--PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M KP   G+ + R L Q+VK +  + SSR+WL+RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKPTIAGNRTGRKLGQRVKKKKLKASSREWLHRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKHQIL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GV   + D
Sbjct: 61  DEKHQILKGARRIIDLGAAPGSWSQIAAKVTGSTEDDIRVAAIDFLEMAHLPGVTILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD D+ + +  A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPDAPQRLVDAVGGEPDLVMSDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L LLK++F++V+HVKP ASRAESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNLLKQNFRQVVHVKPGASRAESVEMFLLAKGFK 228


>gi|116250616|ref|YP_766454.1| ribosomal RNA methyltransferase/cell division FtsJ protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|143461320|sp|Q1ML15|RLME_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115255264|emb|CAK06339.1| putative ribosomal RNA methyltransferase/cell division FtsJ protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  301 bits (770), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGARRIIDLGAAPGSWSQIAAKVTGSTDDDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|241203222|ref|YP_002974318.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857112|gb|ACS54779.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 239

 Score =  300 bits (769), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGARRIIDLGAAPGSWSQIAAKVTGSTDDDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPTAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|190890496|ref|YP_001977038.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli CIAT 652]
 gi|226705303|sp|B3PQL4|RLME_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|190695775|gb|ACE89860.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli CIAT 652]
          Length = 239

 Score =  300 bits (768), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  RRI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKYHILRGARRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|327189976|gb|EGE57100.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli CNPAF512]
          Length = 239

 Score =  300 bits (767), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  RRI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKYHILRGARRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|209548035|ref|YP_002279952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226705304|sp|B5ZR94|RLME_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|209533791|gb|ACI53726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 239

 Score =  300 bits (767), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  +RI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGAKRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPTAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAQFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP ASRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAKGFK 228


>gi|222147674|ref|YP_002548631.1| cell division protein [Agrobacterium vitis S4]
 gi|254809545|sp|B9JSD2|RLME_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|221734662|gb|ACM35625.1| cell division protein [Agrobacterium vitis S4]
          Length = 261

 Score =  295 bits (755), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/228 (60%), Positives = 177/228 (77%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M KPP  G+ + R L QKVK    + SSR WL RHINDPYVQRA+LEG+RAR+A+KLL+I
Sbjct: 1   MTKPPIGGNRTGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA +TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHNILKGARRIIDLGAAPGSWSQIAANVTGSTDSDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  +   + +A+GG PD+V+SDMA PT GH+K DH+RTM LCE A +FA+E+L  GG 
Sbjct: 121 FLDPQAPALLMEAVGGVPDVVISDMAAPTTGHQKTDHIRTMHLCEVAAYFAVEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++VIH+KP +SR ESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTEKDLLNMLKQNFKQVIHIKPASSRQESVEMFLLAKGFK 228


>gi|86356435|ref|YP_468327.1| cell division protein [Rhizobium etli CFN 42]
 gi|123512933|sp|Q2KC36|RLME_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|86280537|gb|ABC89600.1| cell division protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  291 bits (746), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/228 (59%), Positives = 176/228 (77%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  +RI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GV   + D
Sbjct: 61  DEKYHILRGAKRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVWILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  +   + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPGKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|325292005|ref|YP_004277869.1| cell division protein [Agrobacterium sp. H13-3]
 gi|325059858|gb|ADY63549.1| cell division protein [Agrobacterium sp. H13-3]
          Length = 246

 Score =  290 bits (743), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 134/228 (58%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSRRG--LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P S++R G  + QKVK    + SSR WL RHINDPYVQRA+LEG+RAR+A+KLL+I
Sbjct: 1   MSKAPTSTNRTGRKIGQKVKKTKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           N+KHQIL+   RI+DLG++PGSWSQ+A+++T S  ++ RV AID L+++PI GVK  + D
Sbjct: 61  NDKHQILKGATRIIDLGAAPGSWSQIASKVTDSTEDDIRVAAIDFLEIDPIPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + + + +A+GG PDLVLSDMA PT GH+K DH+RTM LCE A  FA+++L  GG 
Sbjct: 121 FLDPTAPDQLMEAVGGTPDLVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT   +L +LKK+F++V+H+KP +SR+ESVEMFLLAK F+
Sbjct: 181 FLAKTFQGGTEKALLDMLKKNFKQVLHIKPASSRSESVEMFLLAKHFK 228


>gi|159184390|ref|NP_353643.2| cell division protein [Agrobacterium tumefaciens str. C58]
 gi|81496462|sp|Q8UHR0|RLME_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|159139703|gb|AAK86428.2| cell division protein [Agrobacterium tumefaciens str. C58]
          Length = 246

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/228 (58%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSRRG--LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P S++R G  + QKVK    + SSR WL RHINDPYVQRA+LEG+RAR+A+KLL+I
Sbjct: 1   MSKAPTSTNRTGRKIGQKVKKTKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           N+KHQIL+   RI+DLG++PGSWSQ+A+++T S  ++ RV AID L+++PI GVK  + D
Sbjct: 61  NDKHQILKGATRIIDLGAAPGSWSQIASKVTDSTEDDIRVAAIDFLEIDPIPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + + + +A+GG PDLVLSDMA PT GH+K DH+RTM LCE A  FA+++L  GG 
Sbjct: 121 FLDPTAPDQLMEAVGGTPDLVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT   +L +LKK+F++V+H+KP +SR+ESVEMFLLAK F+
Sbjct: 181 FLAKTFQGGTEKALLDMLKKNFKQVLHIKPASSRSESVEMFLLAKHFK 228


>gi|163758367|ref|ZP_02165455.1| probable cell division protein [Hoeflea phototrophica DFL-43]
 gi|162284656|gb|EDQ34939.1| probable cell division protein [Hoeflea phototrophica DFL-43]
          Length = 247

 Score =  285 bits (728), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 172/226 (76%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M KPP   + R L QKVK    + SSR W+ RH+NDPYVQ+A+ EG+R+R+ YKLL+I+ 
Sbjct: 1   MTKPPTGPTGRKLGQKVKKGKLKASSRRWVERHLNDPYVQQARQEGYRSRAVYKLLEIDT 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KH+IL   RRI+DLG++PG WSQ++A++T S   + +VVAID L+M+ + GV+F + DFL
Sbjct: 61  KHKILDKARRIIDLGAAPGGWSQISAKVTDSTDADPKVVAIDFLEMDGLPGVRFLQMDFL 120

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  +   +  A+GG PD+VLSDMA PT GHR+ DHLRTM LCE A  FA+E+L  GG FL
Sbjct: 121 DDAAPRALMDALGGAPDVVLSDMAAPTTGHRRTDHLRTMHLCEVAAHFAVEVLAPGGHFL 180

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            KTFQGG+ ND+L +LKK+F+ VIH+KP +SRAESVEMF+LAKGF+
Sbjct: 181 AKTFQGGSENDLLVMLKKNFKSVIHIKPPSSRAESVEMFVLAKGFK 226


>gi|13476893|ref|NP_108462.1| cell division protein ftsJ [Mesorhizobium loti MAFF303099]
 gi|81776173|sp|Q983F8|RLME_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|14027654|dbj|BAB53923.1| cell division protein; FtsJ [Mesorhizobium loti MAFF303099]
          Length = 265

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/223 (54%), Positives = 164/223 (73%), Gaps = 1/223 (0%)

Query: 5   PGSSSRRGLTQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           PGS+  R L  ++K +S  + SSR WL RHINDPYVQR++ +G+R+R+AYKL++I++KH 
Sbjct: 8   PGSAGIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHH 67

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L+   +++DLG++PG W QVAA  T S A N  VV ID L+M+ + G      DFLD D
Sbjct: 68  LLKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVVGIDYLEMDAVPGAPVLLMDFLDPD 127

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + + +A+GGNPD+VLSDMA PT GH++ DH+RTM LCE A  FAL +L  GG FL KT
Sbjct: 128 APQKLAEALGGNPDVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKT 187

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N++L +LKK+F+ V HVKP ASR ESVE++LLAK F+
Sbjct: 188 FQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230


>gi|319784202|ref|YP_004143678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170090|gb|ADV13628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 247

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/223 (52%), Positives = 164/223 (73%), Gaps = 1/223 (0%)

Query: 5   PGSSSRRGLTQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           PGS+S R L  ++K +S  + SSR WL RHINDPYVQR++ +G+R+R+AYKL++I++KH 
Sbjct: 8   PGSASIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHH 67

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L+   +++DLG++PG W QVAA  T S A+   V+ ID L+M+ + G      DFLD  
Sbjct: 68  LLKPGMKVIDLGAAPGGWCQVAAARTKSTADKPHVIGIDYLEMDAVPGAPVLLMDFLDPQ 127

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + + +A+GG+PD+VLSDMA PT GH++ DH+RTM LCE A  FAL +L  GG FL KT
Sbjct: 128 APQKLAEALGGDPDIVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKT 187

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N++L +LKK+F+ V HVKP ASR ESVE++LLAK F+
Sbjct: 188 FQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230


>gi|260466890|ref|ZP_05813074.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
           opportunistum WSM2075]
 gi|259029392|gb|EEW30684.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
           opportunistum WSM2075]
          Length = 236

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/223 (52%), Positives = 164/223 (73%), Gaps = 1/223 (0%)

Query: 5   PGSSSRRGLTQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           PGS+S R L  ++K +S  + SSR WL RHINDPYVQR++ +G+R+R+AYKL++I++KH 
Sbjct: 8   PGSASIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHH 67

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L+   +++DLG++PG W QVAA  T S A N  V+ ID L+M+ + G      DFL+  
Sbjct: 68  LLKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVIGIDYLEMDAVPGAPVLLMDFLNPA 127

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + + +A+GG+PD+VLSDMA PT GH++ DH+RTM LCE A  FAL +L  GG FL KT
Sbjct: 128 APQKLAEALGGDPDVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKT 187

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N++L +LKK+F+ V HVKP ASR ESVE++LLAK F+
Sbjct: 188 FQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230


>gi|110632831|ref|YP_673039.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium sp. BNC1]
 gi|123162804|sp|Q11L51|RLME_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110283815|gb|ABG61874.1| 23S rRNA Um-2552 2'-O-methyltransferase [Chelativorans sp. BNC1]
          Length = 235

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 159/224 (70%)

Query: 3   KPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           K  GS +R   T+  K R  + SSR WL RH+NDPYV+RA  EG R+R+AYKL++I++KH
Sbjct: 5   KKAGSGTRVLKTRVKKKRGLKSSSRRWLERHLNDPYVRRANSEGMRSRAAYKLIEIDDKH 64

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
            IL    +++DLG++PG W QVAA    S+     VV ID L+M+P+ G    + DFLD 
Sbjct: 65  HILAPGMKVIDLGAAPGGWCQVAAASVKSDPAKPSVVGIDYLEMDPVPGAAVLQMDFLDD 124

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + + + + +GG+PD+VLSDMA PT GHR+ DHLRTM LCEAA  FA+ +L  GG+FL K
Sbjct: 125 AAPDRLIEVLGGSPDVVLSDMAAPTTGHRRTDHLRTMQLCEAAADFAISVLKTGGNFLAK 184

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           TFQGGT  ++L LLK++F+ V HVKP ASR ESVE+++LAK F+
Sbjct: 185 TFQGGTEGELLSLLKRNFRSVHHVKPPASRDESVELYILAKDFK 228


>gi|189044091|sp|A5VUZ8|RLME_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 240

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 159/211 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTTKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 209 LKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|148558273|ref|YP_001257653.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
           ovis ATCC 25840]
 gi|148369558|gb|ABQ62430.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
           ovis ATCC 25840]
          Length = 215

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 159/211 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 4   KKKAGTTKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 63

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 64  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 123

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 124 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 183

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 184 LKQKFRSVHHVKPPASRAESVELYLLARDFK 214


>gi|17988942|ref|NP_541575.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|161620740|ref|YP_001594626.1| ribosomal RNA large subunit methyltransferase J [Brucella canis
           ATCC 23365]
 gi|163844815|ref|YP_001622470.1| hypothetical protein BSUIS_B0670 [Brucella suis ATCC 23445]
 gi|189022722|ref|YP_001932463.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
 gi|225629167|ref|ZP_03787200.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
           Cudo]
 gi|225686460|ref|YP_002734432.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis ATCC 23457]
 gi|237817019|ref|ZP_04596011.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           str. 2308 A]
 gi|254690965|ref|ZP_05154219.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 6 str. 870]
 gi|254695724|ref|ZP_05157552.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698749|ref|ZP_05160577.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699910|ref|ZP_05161738.1| Ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           5 str. 513]
 gi|254703032|ref|ZP_05164860.1| Ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           3 str. 686]
 gi|254711054|ref|ZP_05172865.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis B2/94]
 gi|254732193|ref|ZP_05190771.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 4 str. 292]
 gi|256029435|ref|ZP_05443049.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M292/94/1]
 gi|256043568|ref|ZP_05446495.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256111394|ref|ZP_05452420.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 3 str. Ether]
 gi|256157632|ref|ZP_05455550.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M490/95/1]
 gi|256253393|ref|ZP_05458929.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           B1/94]
 gi|256256150|ref|ZP_05461686.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 9 str. C68]
 gi|256262400|ref|ZP_05464932.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260544705|ref|ZP_05820526.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           NCTC 8038]
 gi|260564762|ref|ZP_05835247.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568039|ref|ZP_05838508.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           4 str. 40]
 gi|260756558|ref|ZP_05868906.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759989|ref|ZP_05872337.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260763229|ref|ZP_05875561.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882376|ref|ZP_05893990.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 9 str. C68]
 gi|261216133|ref|ZP_05930414.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261220515|ref|ZP_05934796.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           B1/94]
 gi|261318645|ref|ZP_05957842.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis B2/94]
 gi|261750386|ref|ZP_05994095.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           5 str. 513]
 gi|261753643|ref|ZP_05997352.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           3 str. 686]
 gi|261756885|ref|ZP_06000594.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           F5/99]
 gi|265986444|ref|ZP_06099001.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M292/94/1]
 gi|265989986|ref|ZP_06102543.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265992903|ref|ZP_06105460.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 3 str. Ether]
 gi|265996137|ref|ZP_06108694.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M490/95/1]
 gi|294853531|ref|ZP_06794203.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
           07-0026]
 gi|297249509|ref|ZP_06933210.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
           5 str. B3196]
 gi|306840657|ref|ZP_07473408.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
 gi|306845790|ref|ZP_07478358.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO1]
 gi|81850447|sp|Q8YCD5|RLME_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305655|sp|Q578H4|RLME_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305656|sp|Q8FVY1|RLME_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459528|sp|Q2YKU4|RLME_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044087|sp|A9MBW8|RLME_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044088|sp|A9WYY2|RLME_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703283|sp|B2SAY0|RLME_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809548|sp|C0RLJ5|RLME_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|17984775|gb|AAL53839.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|161337551|gb|ABX63855.1| Ribosomal RNA large subunit methyltransferase J [Brucella canis
           ATCC 23365]
 gi|163675538|gb|ABY39648.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021296|gb|ACD74017.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
 gi|225615663|gb|EEH12712.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
           Cudo]
 gi|225642565|gb|ACO02478.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis ATCC 23457]
 gi|237787832|gb|EEP62048.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           str. 2308 A]
 gi|260097976|gb|EEW81850.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           NCTC 8038]
 gi|260152405|gb|EEW87498.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154704|gb|EEW89785.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           4 str. 40]
 gi|260670307|gb|EEX57247.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260673650|gb|EEX60471.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676666|gb|EEX63487.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260871904|gb|EEX78973.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 9 str. C68]
 gi|260917740|gb|EEX84601.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260919099|gb|EEX85752.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           B1/94]
 gi|261297868|gb|EEY01365.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis B2/94]
 gi|261736869|gb|EEY24865.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           F5/99]
 gi|261740139|gb|EEY28065.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           5 str. 513]
 gi|261743396|gb|EEY31322.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           3 str. 686]
 gi|262550434|gb|EEZ06595.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M490/95/1]
 gi|262763773|gb|EEZ09805.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 3 str. Ether]
 gi|263000655|gb|EEZ13345.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092133|gb|EEZ16430.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264658641|gb|EEZ28902.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M292/94/1]
 gi|294819186|gb|EFG36186.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
           07-0026]
 gi|297173378|gb|EFH32742.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
           5 str. B3196]
 gi|306273682|gb|EFM55520.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO1]
 gi|306289350|gb|EFM60589.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
 gi|326410838|gb|ADZ67902.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M28]
 gi|326554129|gb|ADZ88768.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M5-90]
          Length = 240

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 159/211 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 209 LKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|254720340|ref|ZP_05182151.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp.
           83/13]
 gi|265985356|ref|ZP_06098091.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           83/13]
 gi|306837434|ref|ZP_07470310.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
           2653]
 gi|264663948|gb|EEZ34209.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           83/13]
 gi|306407477|gb|EFM63680.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
           2653]
          Length = 240

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 159/211 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 209 LKQRFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|23500428|ref|NP_699868.1| ribosomal RNA large subunit methyltransferase J [Brucella suis
           1330]
 gi|62317468|ref|YP_223321.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269449|ref|YP_418740.1| cell division protein FtsJ [Brucella melitensis biovar Abortus
           2308]
 gi|256015456|ref|YP_003105465.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
           CCM 4915]
 gi|260167472|ref|ZP_05754283.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp.
           F5/99]
 gi|23464051|gb|AAN33873.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
           suis 1330]
 gi|62197661|gb|AAX75960.1| hypothetical ribosomal RNA large subunit methyltransferase J
           [Brucella abortus bv. 1 str. 9-941]
 gi|82939723|emb|CAJ12720.1| Cell division protein FtsJ [Brucella melitensis biovar Abortus
           2308]
 gi|255998116|gb|ACU49803.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
           CCM 4915]
          Length = 215

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 159/211 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 4   KKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 63

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 64  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 123

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 124 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 183

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 184 LKQKFRSVHHVKPPASRAESVELYLLARDFK 214


>gi|256059126|ref|ZP_05449335.1| Ribosomal RNA large subunit methyltransferase J [Brucella neotomae
           5K33]
 gi|261323077|ref|ZP_05962274.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
           5K33]
 gi|261299057|gb|EEY02554.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
           5K33]
          Length = 240

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 159/211 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTAGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 209 LKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|153011133|ref|YP_001372347.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
           ATCC 49188]
 gi|189040317|sp|A6X5L4|RLME_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|151563021|gb|ABS16518.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
           ATCC 49188]
          Length = 240

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 158/211 (74%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTIKESSRRWLQRHLNDPYVHKSRQDGYRSRAAYKLIEINDRYDLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AA+I GS   N  VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAAKIVGSTDENPHVVGIDYLHVDPLPGVVLLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 209 LKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|163867451|ref|YP_001608650.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
 gi|189044086|sp|A9IMA1|RLME_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|161017097|emb|CAK00655.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
          Length = 242

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 162/231 (70%), Gaps = 6/231 (2%)

Query: 2   VKPP----GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKL 55
            KPP    G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL
Sbjct: 5   TKPPTGGYGGSGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKL 64

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
           ++INE+++ L+  ++++DLG++PG W QVA RI GS+     VV ID L ++P+  V   
Sbjct: 65  IEINERYKFLKKGQKVIDLGAAPGGWCQVAERIVGSSNEKPSVVGIDYLHVDPLPRVAML 124

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + DFL  D+ + + + +G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  
Sbjct: 125 EMDFLHADAPQKLIETLGTKPDVVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKP 184

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG FL K FQGG  N +L +LK+HF+KV HVKP ASR+ESVE++LLA  F+
Sbjct: 185 GGHFLAKAFQGGAENTLLAILKQHFKKVYHVKPPASRSESVELYLLALEFK 235


>gi|239834096|ref|ZP_04682424.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
           intermedium LMG 3301]
 gi|239822159|gb|EEQ93728.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
           intermedium LMG 3301]
          Length = 241

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 112/223 (50%), Positives = 163/223 (73%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G +    L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ 
Sbjct: 18  GGAGSSNLQVRVKKKAGTIKESSRRWLQRHLNDPYVHKSKQDGYRSRAAYKLIEINDRYN 77

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L+  ++I+DLG++PG WSQ+AA++ GS   +  VV ID L ++P+ GV   + DFLD +
Sbjct: 78  LLKKGQKIIDLGAAPGGWSQIAAKVVGSTDEDPHVVGIDYLHVDPLPGVVLLEMDFLDDE 137

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           +   + +A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KT
Sbjct: 138 APRKLMEALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKT 197

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGGT N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 198 FQGGTENELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 240


>gi|52355215|gb|AAU44782.1| FtsJ [Bartonella vinsonii subsp. arupensis]
          Length = 240

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/223 (51%), Positives = 158/223 (70%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL++INE+++
Sbjct: 13  GGSGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++I+DLG++PG W QVA R+ GSN     VV ID L + P+ GV   K DFL  D
Sbjct: 73  FLKKGQKIIDLGAAPGGWCQVAVRVVGSNDQKPSVVGIDYLHVNPLPGVVMLKMDFLHAD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K 
Sbjct: 133 APQKLIDALGEKPDVVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L  LK++F+ V HVKP ASR+ESVE++LLA GF+
Sbjct: 193 FQGGAENTLLTTLKQNFKTVHHVKPPASRSESVELYLLALGFK 235


>gi|254712483|ref|ZP_05174294.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M644/93/1]
 gi|254715556|ref|ZP_05177367.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M13/05/1]
 gi|261217293|ref|ZP_05931574.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M13/05/1]
 gi|261320164|ref|ZP_05959361.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M644/93/1]
 gi|260922382|gb|EEX88950.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M13/05/1]
 gi|261292854|gb|EEX96350.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M644/93/1]
          Length = 240

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 111/211 (52%), Positives = 158/211 (74%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ +CE    FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTTGHRRTDHLRTVHVCEVVADFAVSVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 209 LKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|121602887|ref|YP_988636.1| ribosomal RNA large subunit methyltransferase J [Bartonella
           bacilliformis KC583]
 gi|143459401|sp|A1URN3|RLME_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120615064|gb|ABM45665.1| ribosomal RNA large subunit methyltransferase J [Bartonella
           bacilliformis KC583]
          Length = 239

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 158/216 (73%), Gaps = 2/216 (0%)

Query: 13  LTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           L Q+VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++INE+++IL+  ++
Sbjct: 20  LYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKADGYRSRAAYKLIEINERYKILKKGQK 79

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           I+DLG++PG W QVAAR+  S   N  VV ID L MEP+ GV   + DF   D+ + +  
Sbjct: 80  IIDLGAAPGGWCQVAARLVESKDYNPSVVGIDYLHMEPLPGVAILEMDFFHEDAPQELIS 139

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
            +G  PD+VLSDMA PT GHR+ DHLRT++LCEAA  F++ +L  GG FL KTFQGG   
Sbjct: 140 TLGSKPDVVLSDMAAPTTGHRQTDHLRTIALCEAAVHFSISVLKPGGHFLTKTFQGGAEG 199

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++L  LK++F+KV HVKP ASRAESVE++LLA  F+
Sbjct: 200 NLLATLKQNFKKVHHVKPPASRAESVELYLLALQFK 235


>gi|240849823|ref|YP_002971211.1| cell division protein FtsJ [Bartonella grahamii as4aup]
 gi|240266946|gb|ACS50534.1| cell division protein FtsJ [Bartonella grahamii as4aup]
          Length = 242

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/223 (50%), Positives = 160/223 (71%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL++INE+++
Sbjct: 13  GGSGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYR 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++++DLG++PG W QVA RI GS+  +  VV ID L ++P+  V   + DFL  D
Sbjct: 73  FLKKGQKVIDLGAAPGGWCQVAERIVGSSDEDPSVVGIDYLHVDPLPRVAMLEMDFLHTD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + + + +G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K 
Sbjct: 133 APQKLIETLGTKPDVVLSDMASPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L +LK+HF+KV HVKP ASR+ESVE++LLA  F+
Sbjct: 193 FQGGAENTLLTILKQHFKKVYHVKPPASRSESVELYLLALEFK 235


>gi|114705167|ref|ZP_01438075.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
 gi|114539952|gb|EAU43072.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
          Length = 244

 Score =  244 bits (622), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 165/221 (74%), Gaps = 1/221 (0%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           +++ RGL  KVK  R  + SSR W+ R +NDPYV++A+ +G+R+R+AYKL+++++++++L
Sbjct: 4   TNNPRGLHVKVKKKRGLKASSRRWIERQLNDPYVRQAKADGYRSRAAYKLIEMDDRYKLL 63

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R+VDLG++PG W QV+    GS  ++ RVV ID L+++P+ G +    DFLD ++ 
Sbjct: 64  KPGQRVVDLGAAPGGWCQVSVERVGSENDDIRVVGIDFLEVDPVSGAEILLMDFLDDEAP 123

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           + + +A+GG+PD+VLSDMA PTIGHR+ DHLRTM LCE A  FA+  L  GG FL KTFQ
Sbjct: 124 DRLMEALGGSPDIVLSDMAAPTIGHRQTDHLRTMHLCEVAADFAVRTLKPGGHFLCKTFQ 183

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  D+L LLK++F+ V HVKP ASR  SVE+++LAK F+
Sbjct: 184 GGTERDLLELLKRNFKAVHHVKPPASRDGSVELYILAKDFK 224


>gi|90420028|ref|ZP_01227937.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336069|gb|EAS49817.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 255

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/222 (51%), Positives = 156/222 (70%), Gaps = 1/222 (0%)

Query: 6   GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           G S  RG+T KVK  R  + SSR WL R +NDPYV+RA+ +G+R+R+AYKL+++++++++
Sbjct: 4   GRSDSRGMTVKVKKKRGLKLSSRRWLERQLNDPYVRRAKADGYRSRAAYKLIEMDDRYKL 63

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+   RIVDLG++PG W QVA   TGS A + RVV ID L +EP+ G      DFLD  +
Sbjct: 64  LKPGHRIVDLGAAPGGWCQVAVDRTGSTAADVRVVGIDYLTVEPVAGATILLMDFLDDAA 123

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            + + + +G  PD+VLSD+A PT GHR  DH+RTM LC+ A  FA+  L  GG FL KTF
Sbjct: 124 PDKLMETLGEAPDIVLSDLAAPTTGHRPTDHIRTMHLCDVAADFAIRTLKPGGHFLAKTF 183

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           QGGT  ++L LLK+HF  V HVKP ASR  SVE+++LAK F+
Sbjct: 184 QGGTERELLTLLKRHFVSVHHVKPPASREGSVELYILAKSFK 225


>gi|304391240|ref|ZP_07373184.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
           R2A130]
 gi|303296596|gb|EFL90952.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
           R2A130]
          Length = 246

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 159/214 (74%), Gaps = 2/214 (0%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R +  KVK  R  + SS  WL R +NDPYVQ+A+ EG+ +R+AYKL+++N+++ IL+   
Sbjct: 28  RNMHTKVKTARGRKLSSTLWLQRQLNDPYVQKARAEGYASRAAYKLIEMNDRYNILKPGY 87

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG++PG W QVAAR  GS+ ++ RVV ID LDM+P+ G    K DFLD D+ + +R
Sbjct: 88  RVVDLGAAPGGWCQVAAREVGSSIDDIRVVGIDYLDMDPVPGATIIKKDFLDDDAPDMLR 147

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           +A+GG+P DLV+SDMA PTIGHRK DH+RTM+L E A  FALE++  GG FL KTFQGGT
Sbjct: 148 EALGGHPIDLVMSDMAAPTIGHRKTDHMRTMALVEVAFDFALEVVKPGGHFLTKTFQGGT 207

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
              +L L+KK+F+ + HVKP ASR  SVE++LLA
Sbjct: 208 EQALLDLMKKNFKSIHHVKPPASRDGSVELYLLA 241


>gi|319408132|emb|CBI81785.1| cell division protein ftsJ [Bartonella schoenbuchensis R1]
          Length = 241

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 159/219 (72%), Gaps = 2/219 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G +    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL++INE+++
Sbjct: 13  GGAGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           IL+  ++I+DLG++PG W QVAARI GSN     VV ID L ++P+ GV   + DF   +
Sbjct: 73  ILKKGQKIIDLGAAPGGWCQVAARIVGSNDQRPSVVGIDYLHVDPLPGVVMLEMDFFHEN 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE+A  FA+ +L  GG FL KT
Sbjct: 133 APQQLISALGAKPDVVLSDMAAPTTGHRQTDHLRTVYLCESAADFAISVLKPGGHFLAKT 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           FQGG  N +L  LK++F+ + HVKP ASRAESVE++L+A
Sbjct: 193 FQGGAENALLTKLKQNFKTIHHVKPPASRAESVELYLVA 231


>gi|254705826|ref|ZP_05167654.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M163/99/10]
 gi|261313253|ref|ZP_05952450.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M163/99/10]
 gi|261302279|gb|EEY05776.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M163/99/10]
          Length = 232

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 153/204 (75%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+DLG
Sbjct: 29  KKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLG 88

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+G  
Sbjct: 89  AAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDALGDK 148

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++L L
Sbjct: 149 PDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLAL 208

Query: 196 LKKHFQKVIHVKPVASRAESVEMF 219
           LK+ F+ V HVKP ASRAESVE++
Sbjct: 209 LKQKFRSVHHVKPPASRAESVELY 232


>gi|328544053|ref|YP_004304162.1| ribosomal RNA large subunit methyltransferase J [polymorphum gilvum
           SL003B-26A1]
 gi|326413797|gb|ADZ70860.1| Ribosomal RNA large subunit methyltransferase J [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 156/221 (70%), Gaps = 2/221 (0%)

Query: 8   SSRRGLTQKVKNRSC-QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  RGL  +VK  +  + SS  WL R +NDPYV+RA++EG+R+R+AYKL++I++KH++L+
Sbjct: 8   SGDRGLHVRVKTAAKRKESSTRWLERQLNDPYVRRAKMEGYRSRAAYKLIEIDDKHRLLK 67

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
             +R+VDLG++PG W QVA    GS   N  VV ID LDM+ I GV F + DFLD D+  
Sbjct: 68  PGQRVVDLGAAPGGWCQVAVERVGSTPENPLVVGIDYLDMDHIPGVVFLRKDFLDDDAPA 127

Query: 127 FIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +  A+GG+ PD+VLSDMA PT GHR+ DHLRT  L E A  FA E L  GG FL K F+
Sbjct: 128 ALMAALGGHRPDVVLSDMAAPTTGHRQTDHLRTTHLFEVAILFARENLAPGGSFLAKVFR 187

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT N +L  LK+ F+ V+HVKP ASR ES E++++AKGFR
Sbjct: 188 GGTENALLADLKRDFETVVHVKPPASRKESPELYVVAKGFR 228


>gi|49473815|ref|YP_031857.1| cell division protein ftsJ [Bartonella quintana str. Toulouse]
 gi|81647276|sp|Q6G0S9|RLME_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49239318|emb|CAF25648.1| Cell division protein ftsJ [Bartonella quintana str. Toulouse]
          Length = 241

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/223 (50%), Positives = 156/223 (69%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL+++NE+++
Sbjct: 13  GGSGSHKLYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEMNERYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++I+DLG++PG W QVA RI GS+     VV ID L + P+ GV   + DFL  D
Sbjct: 73  FLKKGQKIIDLGAAPGGWCQVAQRIVGSSDEKPSVVGIDYLPVVPLPGVIMLEMDFLHTD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ D+LRT  LCE A  FAL +L  GG FLVK 
Sbjct: 133 APQKLIDALGTKPDVVLSDMAAPTTGHRQTDYLRTTYLCEVAADFALSVLKSGGHFLVKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L  LK++F+ V HVKP ASR ESVE++LLA  F+
Sbjct: 193 FQGGAENTLLTTLKQNFKTVHHVKPPASRTESVELYLLALEFK 235


>gi|319407620|emb|CBI81272.1| cell division protein ftsJ [Bartonella sp. 1-1C]
          Length = 240

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 154/217 (70%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  +
Sbjct: 17  ALYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQ 76

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG W QVAAR   S+     VV ID L M+P+ GV   + DFL  ++   + 
Sbjct: 77  KIIDLGAAPGGWCQVAARKVESSNQKPSVVGIDYLPMDPLPGVVVLEMDFLHENAPRKLM 136

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PD+VLSDMA PT GHRK DHLRT+ LCE A  FAL +L  GG FL K FQGG  
Sbjct: 137 NALGEQPDIVLSDMAAPTTGHRKTDHLRTVYLCEMAADFALSVLKSGGHFLAKAFQGGAE 196

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 197 NTLLTTLKQNFKTVHHVKPPASRAESVELYLLALEFK 233


>gi|319404629|emb|CBI78235.1| cell division protein ftsJ [Bartonella rochalimae ATCC BAA-1498]
          Length = 240

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 155/216 (71%), Gaps = 2/216 (0%)

Query: 13  LTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  ++
Sbjct: 18  LYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQK 77

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           I+DLG++PG W QVAAR   S+     VV ID L M+P+ GV   + DFL  ++ + +  
Sbjct: 78  IIDLGAAPGGWCQVAARKVESSDQKPSVVGIDYLPMDPLPGVVILEMDFLHENAPQKLMN 137

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K FQGG  N
Sbjct: 138 ALGEQPDIVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKAFQGGAEN 197

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 198 TLLTTLKQNFKTVHHVKPPASRAESVELYLLALEFK 233


>gi|319406133|emb|CBI79772.1| cell division protein ftsJ [Bartonella sp. AR 15-3]
          Length = 240

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 153/218 (70%), Gaps = 2/218 (0%)

Query: 11  RGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           + L Q++K +  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  
Sbjct: 16  KALYQRIKKKAGTIKSSSRRWLERHLNDPYVHKSKVDGYRSRSAYKLIEIDERYKIFKKG 75

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           ++++DLG++PG W QV +R   S      VV ID L M+P+ GV   K DFL  D+ + +
Sbjct: 76  QKVIDLGAAPGGWCQVVSRKVASTDQKPSVVGIDYLAMDPLPGVIVLKMDFLCEDAPQKL 135

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             A+   PD+VLSDMA PT GHRK DHLRTM LCE A  FAL +L  GG FL K FQGG 
Sbjct: 136 MNALETQPDIVLSDMAAPTTGHRKTDHLRTMYLCEMAADFALSVLKTGGHFLAKAFQGGA 195

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            N +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 196 ENTLLTTLKQNFKIVHHVKPPASRAESVELYLLALEFK 233


>gi|254473353|ref|ZP_05086750.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
 gi|211957469|gb|EEA92672.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
          Length = 233

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 156/221 (70%), Gaps = 2/221 (0%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  RG+ Q+VK  R    SS  WL R +NDPYV+RA+++G+R+R+AYKL++INEKH+IL+
Sbjct: 10  SGDRGMFQRVKTARKRSNSSTLWLQRQLNDPYVRRAKVDGYRSRAAYKLIEINEKHEILK 69

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
              R+VDLG +PG WSQ+ A I GS  ++  VV ID L++EPI GV   + DFLD D+ +
Sbjct: 70  PGMRVVDLGCAPGGWSQLTAPIVGSTDDDPLVVGIDYLEVEPIPGVVILQKDFLDDDAPD 129

Query: 127 FIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            + +A+GG+ PDLV+SDMA PT GHR+ DHLRT  L E A  FA + LN GG FL K F 
Sbjct: 130 ELMKALGGHRPDLVMSDMAAPTTGHRQTDHLRTTYLFEIAIDFARQNLNEGGTFLSKVFA 189

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG    +L  LKK F+ V+H+KP ASR  S EMF+LA+G+R
Sbjct: 190 GGAEASLLQDLKKEFKSVVHIKPPASRKGSPEMFILARGYR 230


>gi|49474969|ref|YP_033010.1| cell division protein ftsJ [Bartonella henselae str. Houston-1]
 gi|81648296|sp|Q6G4Z3|RLME_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49237774|emb|CAF26967.1| Cell division protein ftsJ [Bartonella henselae str. Houston-1]
          Length = 247

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 156/223 (69%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  +   SSR WL RH+NDPYV +++++G+R+R+AYKL++IN++++
Sbjct: 13  GGSGSHKLYQRVKKKAGTITASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINQRYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++I+DLG++PG W QV+  I GS+     VV ID L ++P+ GV   + DFL  D
Sbjct: 73  FLKKGQKIIDLGAAPGGWCQVSGCIVGSSDEKPSVVGIDYLHVDPLPGVVMLEMDFLHSD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K 
Sbjct: 133 APQKLIDALGTKPDVVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L  LK++F+ V HVKP ASR+ESVE++LLA  F+
Sbjct: 193 FQGGAENTLLTTLKQNFKTVHHVKPPASRSESVELYLLALEFK 235


>gi|319899272|ref|YP_004159365.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
 gi|319403236|emb|CBI76795.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
          Length = 238

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/217 (51%), Positives = 153/217 (70%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L Q+VK R  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  +
Sbjct: 17  ALYQRVKKRAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQ 76

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG W QVAA    S+     VV ID L M+P+ GV   + DFL  ++ + + 
Sbjct: 77  KIIDLGAAPGGWCQVAAHKVESSDQKPSVVGIDYLPMDPLPGVVVLEMDFLHENAPQKLM 136

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL  L  GG FL K FQGG  
Sbjct: 137 NALGEQPDIVLSDMAAPTTGHRQTDHLRTVYLCEMAADFALSFLKSGGHFLAKAFQGGAE 196

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 197 NILLTKLKQNFKTVHHVKPPASRAESVELYLLALEFK 233


>gi|218531672|ref|YP_002422488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           chloromethanicum CM4]
 gi|218523975|gb|ACK84560.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           chloromethanicum CM4]
          Length = 239

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 149/213 (69%), Gaps = 4/213 (1%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KLL+I+E+ ++L+  +RIVD
Sbjct: 17  QRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVD 76

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQVAARI G +    R+V ID+L++EP+ G  F   DFLD  + E + + +G
Sbjct: 77  LGAAPGGWSQVAARILGESG---RIVGIDLLEIEPMPGATFITLDFLDPSAPERLTELLG 133

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  DLVLSDMA  T GH+K DHLR + L E A  FA E+L  GG +L K FQGGT  D+L
Sbjct: 134 GRADLVLSDMAANTTGHKKTDHLRIIGLAETAAVFAREILAPGGAYLAKVFQGGTEGDLL 193

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 194 TELKRDFATVRHVKPQASRADSSELYVLATGFR 226


>gi|240140172|ref|YP_002964649.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) [Methylobacterium extorquens AM1]
 gi|254562611|ref|YP_003069706.1| ribosomal RNA large subunit methyltransferase J [Methylobacterium
           extorquens DM4]
 gi|240010146|gb|ACS41372.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) [Methylobacterium extorquens AM1]
 gi|254269889|emb|CAX25867.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) [Methylobacterium extorquens DM4]
          Length = 239

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 149/213 (69%), Gaps = 4/213 (1%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KLL+I+E+ ++L+  +RIVD
Sbjct: 17  QRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVD 76

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQVAARI G +    R+V ID+L++EP+ G  F   DFLD  + E + + +G
Sbjct: 77  LGAAPGGWSQVAARILGESG---RIVGIDLLEIEPMPGATFITLDFLDPSAPERLTELLG 133

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  DLVLSDMA  T GH+K DHLR + L E A  FA E+L  GG +L K FQGGT  D+L
Sbjct: 134 GRADLVLSDMAANTTGHKKTDHLRIIGLAETAAVFAREILAPGGAYLAKVFQGGTEGDLL 193

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 194 TELKRDFATVRHVKPQASRADSSELYVLATGFR 226


>gi|163852846|ref|YP_001640889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           extorquens PA1]
 gi|163664451|gb|ABY31818.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           extorquens PA1]
          Length = 239

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 149/213 (69%), Gaps = 4/213 (1%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KLL+I+E+ ++L+  +RIVD
Sbjct: 17  QRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVD 76

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQVAARI G +    R+V ID+L++EP+ G  F   DFLD  + E + + +G
Sbjct: 77  LGAAPGGWSQVAARILGESG---RIVGIDLLEIEPMPGATFITLDFLDPSAPERLTELLG 133

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  DLVLSDMA  T GH+K DHLR + L E A  FA E+L  GG +L K FQGGT  D+L
Sbjct: 134 GRADLVLSDMAANTTGHKKTDHLRIIGLAETAAAFAREILAPGGAYLAKVFQGGTEGDLL 193

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 194 TELKRDFATVRHVKPQASRADSSELYVLATGFR 226


>gi|307947081|ref|ZP_07662416.1| ribosomal RNA large subunit methyltransferase J [Roseibium sp.
           TrichSKD4]
 gi|307770745|gb|EFO29971.1| ribosomal RNA large subunit methyltransferase J [Roseibium sp.
           TrichSKD4]
          Length = 231

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 152/221 (68%), Gaps = 2/221 (0%)

Query: 8   SSRRGLTQKVKNRSCQ-GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  RGL  +VK  + +  SS  WL R +NDPYV+RA+ +G+R+R+AYKLL+I+EKH++L+
Sbjct: 8   SGDRGLHVRVKTSAGRRESSTRWLERQLNDPYVRRAKADGYRSRAAYKLLEIDEKHRLLK 67

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
              R+VDLG++PG W QVA     S  +  +VV ID LDM+ + G+ F K DFLD D+ E
Sbjct: 68  PGYRVVDLGAAPGGWCQVAVDKVKSTEDAPKVVGIDYLDMDYLPGLAFLKKDFLDDDAPE 127

Query: 127 FIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +  A+GG  PDLVLSDMA  T GHR+ DHLRT  L E A  FA + L  GG FL K F+
Sbjct: 128 ALMNALGGGLPDLVLSDMAARTTGHRQTDHLRTTHLFEVAVDFARQNLVPGGSFLAKVFR 187

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT N +L  +K+ F+ V HVKP ASR ES E++++AKGFR
Sbjct: 188 GGTENQLLTEMKRDFKSVAHVKPPASRKESPELYVIAKGFR 228


>gi|154244787|ref|YP_001415745.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xanthobacter
           autotrophicus Py2]
 gi|226705323|sp|A7IDJ5|RLME_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|154158872|gb|ABS66088.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xanthobacter
           autotrophicus Py2]
          Length = 254

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 1/227 (0%)

Query: 1   MVKPPGSSSRRGLTQKVK-NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M  PP     R L  +VK +R    SS+ WL R +NDPYV RA+ EGWR+R+A+KL++++
Sbjct: 1   MTTPPRGPDGRPLKVRVKKSRGRTTSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           EK ++L+   RIVDLG++PG WSQVAA+  G      ++VAID+L++EPI GV F + DF
Sbjct: 61  EKARLLKRGMRIVDLGAAPGGWSQVAAKKIGLEEGLGKIVAIDLLEIEPIPGVAFAQMDF 120

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L  D+ E +   +GG  DLV+SDMA    GH+K DHLR + L E A  FA ++L  GG F
Sbjct: 121 LAPDAPERLIAMLGGQADLVMSDMAANATGHKKTDHLRIVGLVELAVEFARQVLAPGGTF 180

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K  QGG    +L  LK+ F +V HVKP ASRA+S E+++LA GFR
Sbjct: 181 LAKVIQGGMEATLLADLKRDFTQVRHVKPAASRADSAELYVLATGFR 227


>gi|170746591|ref|YP_001752851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653113|gb|ACB22168.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           radiotolerans JCM 2831]
          Length = 241

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/215 (50%), Positives = 149/215 (69%), Gaps = 4/215 (1%)

Query: 13  LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           L Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+AYKLL+I+E++++L+  ++I
Sbjct: 18  LKQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERYKLLRPGQKI 77

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG++PG WSQVAAR+ G      RVV ID+L++EP+ GV+F   DFLD ++ + +   
Sbjct: 78  VDLGAAPGGWSQVAARVVGPTG---RVVGIDLLEIEPMAGVEFITLDFLDPEAPDRLTGM 134

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +GG  DLV+SDMA    GH+K DHLR + L E A  FA E+L  GG +L K  QGGT   
Sbjct: 135 LGGPADLVMSDMAANATGHKKTDHLRIIGLAETAAEFAREILGPGGAYLAKVLQGGTEGA 194

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  LK+ F  V HVKP ASRA+S E+++LA G+R
Sbjct: 195 LLTDLKRDFATVRHVKPAASRADSSELYVLATGYR 229


>gi|158424996|ref|YP_001526288.1| 23S rRNA methylase [Azorhizobium caulinodans ORS 571]
 gi|189044085|sp|A8II77|RLME_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158331885|dbj|BAF89370.1| 23S rRNA methylase [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  224 bits (570), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 154/227 (67%), Gaps = 1/227 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M   P S   R L  +VK+ R+   SS+ WL R +NDPYV RA+ EGWR+R+A+KL++++
Sbjct: 1   MSSSPRSPDARPLKVRVKSARTRSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           EK  +L+   RIVDLG++PG WSQVAA+  G+     ++VAID+L+M+ + GV F + DF
Sbjct: 61  EKLHVLKRGMRIVDLGAAPGGWSQVAAKKIGAAEGQGKIVAIDLLEMDAVTGVMFAQMDF 120

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           LD  + E +   + G  DLV+SDMA  T GH+K DHL+ ++L E A  FA ++L  GG F
Sbjct: 121 LDPTAPERLFAMLDGKADLVMSDMAANTTGHKKTDHLKIIALVELAADFARQVLAPGGAF 180

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQGGT   +L  LK+ + +V H+KP ASRA+S E++L+A GFR
Sbjct: 181 IAKVFQGGTEGTLLADLKRDYAQVRHLKPAASRADSAELYLVATGFR 227


>gi|220921508|ref|YP_002496809.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           nodulans ORS 2060]
 gi|219946114|gb|ACL56506.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           nodulans ORS 2060]
          Length = 255

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 147/226 (65%), Gaps = 5/226 (2%)

Query: 6   GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           G   R  L Q+V+  R    SS+ WL R +NDPYV RA+ EG+R+R+AYKLL+I+E+  +
Sbjct: 6   GGGPRGDLKQRVRTARGRTVSSKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERFHL 65

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNT----RVVAIDILDMEPILGVKFFKFDFL 120
           L+   R+VDLG++PG WSQVAA   GS+        RVV ID+L++EP+ GV F   DFL
Sbjct: 66  LKPGYRVVDLGAAPGGWSQVAAAKVGSHPGAPKPRGRVVGIDLLEIEPLPGVDFITLDFL 125

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  +   + + +GG  DLV+SDMA    GH+K DHLR M L E A  FA E+L  GG +L
Sbjct: 126 DATAPARLIELLGGPADLVMSDMAANATGHKKTDHLRIMGLAETAAAFAREVLAPGGAYL 185

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K  QGGT   +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 186 AKVLQGGTEGTLLADLKRDFSAVRHVKPAASRADSSELYVLATGFR 231


>gi|170739001|ref|YP_001767656.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
           4-46]
 gi|168193275|gb|ACA15222.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
           4-46]
          Length = 258

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 147/226 (65%), Gaps = 5/226 (2%)

Query: 6   GSSSRRGLTQKVK-NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           G   R  L Q+VK  R    SS+ WL R +NDPYV RA+ EG+R+R+AYKLL+I+E+  +
Sbjct: 6   GGGQRGDLKQRVKTGRGRTVSSKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERFHL 65

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFL 120
           L+  +R+VDLG++PG WSQVAA   GS+        RVV ID+L++EP+ GV F   DFL
Sbjct: 66  LRPGQRVVDLGAAPGGWSQVAAAKVGSHPGAPPPRGRVVGIDLLEIEPMPGVDFLTLDFL 125

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  +   +   +GG  DLV+SDMA    GH+K DHLR M L E A  FA E+L  GG +L
Sbjct: 126 DPSAPARLIALLGGPADLVMSDMAANATGHKKTDHLRIMGLAETAAAFAREVLAPGGAYL 185

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K  QGGT   +L  LK+ F  V HVKP ASRA+S E+++LA G+R
Sbjct: 186 AKVLQGGTEGGLLADLKRDFAAVRHVKPAASRADSSELYVLATGYR 231


>gi|298290958|ref|YP_003692897.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
           506]
 gi|296927469|gb|ADH88278.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
           506]
          Length = 236

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 148/209 (70%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS+ WL R +NDPYV RA+ EGWR+R+A+KLL+I++K ++L+   R+VDLG++
Sbjct: 22  KARSLSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLLEIDDKLKLLKPGLRVVDLGAA 81

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG WSQVAA+   +     +VVAID+L+++PI  V F + DFL  ++ + +++ +GG  D
Sbjct: 82  PGGWSQVAAQRVKATEGRGKVVAIDLLEIDPIPAVDFAQLDFLKDEAPDRLKEMLGGEAD 141

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA  T GHR  DHLR + L E A  FA ++L+ GG F+ K FQGGT N +L  LK
Sbjct: 142 VVLSDMAANTTGHRATDHLRIVGLVELAIDFARQVLSPGGAFVAKVFQGGTENTLLAELK 201

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F  V H+KP ASRA+S E++++A GFR
Sbjct: 202 RDFTTVRHIKPQASRADSAELYVVATGFR 230


>gi|254502176|ref|ZP_05114327.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
           alexandrii DFL-11]
 gi|222438247|gb|EEE44926.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
           alexandrii DFL-11]
          Length = 236

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/221 (49%), Positives = 155/221 (70%), Gaps = 2/221 (0%)

Query: 8   SSRRGLTQKVKNRSCQ-GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  RG+  KVK+ + +  SS  WL+R +NDPYV+RA+++G+R+R+AYKL++I++KH++L+
Sbjct: 9   SGDRGMHVKVKSAAGRRESSTRWLSRQLNDPYVRRAKIDGYRSRAAYKLIEIDDKHKLLK 68

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
              R+VDLG +PG W Q+A     S  ++ +VV ID LDM+ + G  F K DFLD D+  
Sbjct: 69  PGYRVVDLGCAPGGWCQIAVDRVKSTIDSPKVVGIDYLDMDHVRGAVFLKKDFLDDDAPA 128

Query: 127 FIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            + +A+GG+ PD+VLSDMA PT GH++ DHLRT  L E A  FA   L  GG FL K F+
Sbjct: 129 ALMEALGGHKPDVVLSDMAAPTTGHKQTDHLRTTHLFEIAIDFARRNLVPGGSFLAKVFR 188

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT N +L  LK+ F+ V H+KP ASR ES E++++AKGFR
Sbjct: 189 GGTENAMLQELKREFKSVAHLKPPASRKESPELYVIAKGFR 229


>gi|154251621|ref|YP_001412445.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Parvibaculum
           lavamentivorans DS-1]
 gi|189040318|sp|A7HSA5|RLME_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|154155571|gb|ABS62788.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Parvibaculum
           lavamentivorans DS-1]
          Length = 254

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 151/224 (67%), Gaps = 8/224 (3%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R L  +VK  R    SS  WL R +NDPYV  A+ EG+R+R+A+KL +I++K++ L+   
Sbjct: 20  RALKVRVKTARKRSNSSTRWLQRQLNDPYVHAAKREGYRSRAAFKLAEIDDKYRFLKPGG 79

Query: 70  RIVDLGSSPGSWSQVA-ARI------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
           R+VDLG +PG W QVA AR+       G+   + RV+ +D L+M+P+ G    + DFL  
Sbjct: 80  RVVDLGCAPGGWCQVAVARVKAEGGDAGAEGRHGRVIGLDYLEMDPVPGATILQLDFLSE 139

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + + +++ + G  D+VLSDMA PT GH++ DH+R MSLCE A  FA E+L  GG FL K
Sbjct: 140 GADDQVKELLAGEADVVLSDMAAPTTGHKQTDHMRIMSLCEIAAHFATEVLAPGGTFLAK 199

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +GGT N++L LLK+HF+ V HVKP ASRA+S EM++LA+GF+
Sbjct: 200 VLRGGTENELLVLLKQHFKTVRHVKPKASRADSAEMYVLAQGFK 243


>gi|118589174|ref|ZP_01546581.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
 gi|118438503|gb|EAV45137.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
          Length = 235

 Score =  221 bits (562), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/218 (50%), Positives = 153/218 (70%), Gaps = 2/218 (0%)

Query: 11  RGLTQKVKNRSCQ-GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RGL  KVK  + +  SS  WL R +NDPYV+RA+++G+R+R+AYKL++I++KH++L+   
Sbjct: 11  RGLHVKVKTSAGRRESSTRWLQRQLNDPYVRRAKMDGYRSRAAYKLIEIDDKHKLLKPGY 70

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG +PG W QVA +   S+ +  +VV ID L+M+ + G  F + DFLD D+   + 
Sbjct: 71  RVVDLGCAPGGWCQVAVQRVQSSVDAPKVVGIDYLEMDHVRGTTFLQKDFLDDDAPAALM 130

Query: 130 QAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           +A+GG+ PD+VLSDMA PT GH++ DHLRT  L E A  FA   L  GG FL K F+GGT
Sbjct: 131 EALGGHKPDVVLSDMAAPTTGHKQTDHLRTTHLFEIAIDFARRNLVPGGSFLAKVFRGGT 190

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            N +L  LK+ F+ V H+KP ASR ES E++++AKGFR
Sbjct: 191 ENALLHDLKREFKSVAHIKPPASRKESPELYVIAKGFR 228


>gi|239948521|ref|ZP_04700274.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|241563460|ref|XP_002401713.1| cell division protein FtsJ, putative [Ixodes scapularis]
 gi|215501905|gb|EEC11399.1| cell division protein FtsJ, putative [Ixodes scapularis]
 gi|239922797|gb|EER22821.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 227

 Score =  220 bits (561), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 99/200 (49%), Positives = 150/200 (75%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A++EG+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQV
Sbjct: 24  SSNNWLKRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ N  N ++++ID+L++EPI GV+FF+ DF + D+ E I QA+ G  D+V+SD
Sbjct: 84  ASKLIKASDNSLNNKIISIDLLEIEPIAGVEFFQKDFFEEDTEELIIQALDGRADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAKNELLNKVKREFRT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|94496284|ref|ZP_01302862.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. SKA58]
 gi|94424463|gb|EAT09486.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. SKA58]
          Length = 224

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 148/221 (66%), Gaps = 6/221 (2%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G+ + +   +  K R+ Q  S  WL RH+NDPYV++A+ EGWR+R+A+KL++++EK   +
Sbjct: 3   GAGAGKVRVKTAKGRTAQ--SVRWLERHLNDPYVKKAKAEGWRSRAAFKLIELDEKFHFV 60

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + +R +VDLG +PG W+QV  ++    A    VV ID+L  +PI GV  F+ DF+D  + 
Sbjct: 61  KGSRAVVDLGVAPGGWAQVVRKM----APKAAVVGIDLLPTDPIPGVTLFEMDFMDDKAP 116

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           + +R+A+G  PDLV+SDMA  T+GH   DHLRTM L EAA  FA+E L  GG F+ K F 
Sbjct: 117 DLLREALGQEPDLVISDMAANTVGHAPTDHLRTMGLVEAAAQFAVENLRKGGTFVAKVFA 176

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT   +L +LKKHF  + H KP ASR  SVE +++A+GF+
Sbjct: 177 GGTDAQLLAVLKKHFTTIKHAKPPASRKGSVEWYVVAQGFK 217


>gi|296445113|ref|ZP_06887073.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
           trichosporium OB3b]
 gi|296257287|gb|EFH04354.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
           trichosporium OB3b]
          Length = 235

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 151/225 (67%), Gaps = 4/225 (1%)

Query: 6   GSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           G+S R G   L  +VK  R    SS  WL R +NDPYV +A+ +G+R+R+AYKLL+++E+
Sbjct: 5   GASGREGGRSLKTRVKTARKRSLSSTLWLERQLNDPYVAQAKRDGYRSRAAYKLLELDER 64

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
             + +  +RI DLG++PG WSQ+AAR  G+     RVV ID+L+MEP+ GV+F   DF D
Sbjct: 65  FHLFRPGQRIADLGAAPGGWSQIAARKVGAGQGKGRVVGIDLLEMEPVQGVEFTVMDFND 124

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+ E I++ +GG  D V+SDMA    GH++ DHL+ ++L E A  FA E+L  GG F+ 
Sbjct: 125 ADAPERIKEMLGGPADGVMSDMAANATGHKQTDHLKIVALAELAVEFAREVLAPGGFFVA 184

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  QGGT + +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 185 KVLQGGTEHTLLAELKRDFAVVRHVKPAASRADSAELYVLATGFR 229


>gi|304321737|ref|YP_003855380.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300639|gb|ADM10238.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 244

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 110/217 (50%), Positives = 143/217 (65%), Gaps = 4/217 (1%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R LT+KVK  R  + SS+ WL R +NDPYV RA+ EG+R+R+AYKLL+++EK  +L+   
Sbjct: 24  RELTEKVKTARGRKISSKLWLERQLNDPYVARARAEGFRSRAAYKLLELDEKFGLLRPGA 83

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG++PG WSQVA R         +VV ID LDM P+ GV   K DFLD D+   +R
Sbjct: 84  RVVDLGAAPGGWSQVAGRAV---LPGGQVVGIDYLDMPPLDGVTLLKADFLDEDTPGRLR 140

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
             +GG   LVLSDMA PT GH+  DHLR ++L EAA  FA  +L  GG ++ K  QGG+ 
Sbjct: 141 AVLGGPAHLVLSDMAAPTTGHKSTDHLRIVALAEAALDFAETVLAPGGGYVAKVLQGGSE 200

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +L  LK  F  V H KP ASRAES EM+++A G+R
Sbjct: 201 KSLLDRLKADFTDVAHAKPSASRAESAEMYVVATGYR 237


>gi|188582866|ref|YP_001926311.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium populi
           BJ001]
 gi|179346364|gb|ACB81776.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium populi
           BJ001]
          Length = 244

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 150/213 (70%), Gaps = 4/213 (1%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KL++I+E+ ++L+  +RIVD
Sbjct: 23  QRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPAQRIVD 82

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQVAA+I G +    R+V ID+LD+EP+ G  F   DFLD  + E + + +G
Sbjct: 83  LGAAPGGWSQVAAKIVGESG---RIVGIDLLDVEPMAGATFITLDFLDDSAPERLTELLG 139

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  DLVLSDMA  T GH+K DHLRT+ L E+A  FA E+L  GG FL K FQGGT   +L
Sbjct: 140 GKADLVLSDMAANTTGHKKTDHLRTIGLAESAAAFAAEILAPGGAFLAKVFQGGTEGQLL 199

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 200 ADLKRDFATVRHVKPAASRADSSELYVLATGFR 232


>gi|85709359|ref|ZP_01040424.1| 23S rRNA methylase [Erythrobacter sp. NAP1]
 gi|85688069|gb|EAQ28073.1| 23S rRNA methylase [Erythrobacter sp. NAP1]
          Length = 221

 Score =  217 bits (553), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 145/211 (68%), Gaps = 5/211 (2%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K   +  + S+R WL R +NDPYV++A+ +G+R+R+AYKLL+++EK  +L+  RR+VDLG
Sbjct: 13  KTAKKRTESSTR-WLQRQLNDPYVKQAKADGYRSRAAYKLLELDEKFSLLRGTRRVVDLG 71

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
            +PG WSQV      + A    +V ID+L  EPI GV  F+ DF+D  + E +  A+GG 
Sbjct: 72  IAPGGWSQVVR----AKAPKAEIVGIDLLPTEPIEGVTIFEMDFMDDAAPEKLESALGGP 127

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           PDLV+SDMA  T+GH++ DHLRTM+L EA  +FA+E L  GG F+ K   GGT  ++L L
Sbjct: 128 PDLVISDMAANTVGHKQTDHLRTMALVEAGAWFAVETLEKGGAFVAKVLAGGTDAELLKL 187

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+HF+ V H KP ASR  S E +++A+GF+
Sbjct: 188 LKRHFKTVKHAKPPASRKGSSEWYVVAQGFK 218


>gi|307294965|ref|ZP_07574807.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingobium
           chlorophenolicum L-1]
 gi|306879439|gb|EFN10657.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingobium
           chlorophenolicum L-1]
          Length = 223

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 146/221 (66%), Gaps = 6/221 (2%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G+ + +   +  K R+ Q  S  WL R +NDPYV+RA+ EGWR+R+A+KL++++EK   +
Sbjct: 3   GTGAGKVRVKTAKGRTAQ--STRWLERQLNDPYVRRAKAEGWRSRAAFKLIELDEKFHFV 60

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + +R +VDLG +PG W+QV  ++        +VV ID+L  +PI GV  F+ DF+D  + 
Sbjct: 61  KGSRAVVDLGVAPGGWAQVVRKLC----PKAKVVGIDLLPTDPIPGVTLFQMDFMDDKAP 116

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + +A+G  PDLV+SDMA  T+GH   DHLRTM L EAA  FA+E L  GG F+ K F 
Sbjct: 117 VLLAEALGDAPDLVISDMAANTVGHAATDHLRTMGLVEAAAMFAVENLRKGGTFVAKVFA 176

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  D+L +LKKHF  + H KP ASR  SVE +++A+GF+
Sbjct: 177 GGTDADLLAILKKHFTTIKHAKPPASRKGSVEWYVVAQGFK 217


>gi|91205935|ref|YP_538290.1| ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           RML369-C]
 gi|157826704|ref|YP_001495768.1| ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           OSU 85-389]
 gi|122425326|sp|Q1RHG3|RLME_RICBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040326|sp|A8GV60|RLME_RICB8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91069479|gb|ABE05201.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           RML369-C]
 gi|157802008|gb|ABV78731.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           OSU 85-389]
          Length = 227

 Score =  215 bits (548), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 146/200 (73%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A++EG+R+R+AYKLL+I+EK +I   N ++VDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFTPNMKVVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  +   N   +++++D+L++EPI GV+ F+ DF + D+ E I QA+ G  D+VLSD
Sbjct: 84  ASKLIKATDGNLKNKIISVDLLEIEPIPGVESFQKDFFEKDTEELIIQALKGKADIVLSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++LN  G F+ K F+GG  N++L  +K+ F  
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIFRGGAENELLNKVKREFST 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR ES E++L+A
Sbjct: 204 VKHFKPSSSRKESTEIYLVA 223


>gi|294010578|ref|YP_003544038.1| cell division protein methyltransferase FtsJ [Sphingobium japonicum
           UT26S]
 gi|292673908|dbj|BAI95426.1| cell division protein methyltransferase FtsJ [Sphingobium japonicum
           UT26S]
          Length = 215

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/212 (47%), Positives = 142/212 (66%), Gaps = 6/212 (2%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +  K R+ Q  S  WL R +NDPYV+RA+ EGWR+R+A+KL++++EK   L+ +R +VDL
Sbjct: 4   KTAKGRTAQ--STRWLERQLNDPYVRRAKAEGWRSRAAFKLIELDEKFHFLKGSRAVVDL 61

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           G +PG W+QV  ++        +VV ID+L  +PI GV  F+ DF+D  +   + +A+G 
Sbjct: 62  GVAPGGWAQVVRKLC----PKAKVVGIDLLPTDPIPGVTLFQMDFMDDKAPALLAEALGD 117

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
            PDLV+SDMA  T+GH   DHLRTM L EAA  FA+E L  GG F+ K F GGT  D+L 
Sbjct: 118 APDLVISDMAANTVGHAATDHLRTMGLVEAAAMFAVENLRKGGTFVAKVFAGGTDADLLA 177

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +LK+HF  + H KP ASR  SVE +++A+GF+
Sbjct: 178 ILKRHFTTIKHAKPPASRKGSVEWYVVAQGFK 209


>gi|192290875|ref|YP_001991480.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris TIE-1]
 gi|226705305|sp|B3QFD2|RLME_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|192284624|gb|ACF01005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris TIE-1]
          Length = 237

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 138/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+AYKL +I++K ++L+S   +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     +VVAID+L+M  + GV F + DFLD  + E +R+ +GG  D+V+SDMA
Sbjct: 82  AAKKVGAADGRGKVVAIDLLEMGEVPGVTFAQLDFLDPSAPERLREMLGGGADIVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA E+L  GG FL K FQ G    ++  LK+ +  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELKRDYASVK 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E +LLA GFR
Sbjct: 202 HVKPAASRKDSSERYLLATGFR 223


>gi|39935266|ref|NP_947542.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris CGA009]
 gi|81562937|sp|Q6N7Q9|RLME_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|39649118|emb|CAE27638.1| cell division protein FtsJ [Rhodopseudomonas palustris CGA009]
          Length = 237

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 138/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+AYKL +I++K ++L+S   +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     +VVAID+L+M  + GV F + DFLD  + E +R+ +GG  D+V+SDMA
Sbjct: 82  AAKKVGAADGRGKVVAIDLLEMGEVPGVTFAQLDFLDPSAPERLREMLGGGADIVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA E+L  GG FL K FQ G    ++  LK+ +  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELKRDYASVK 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E +LLA GFR
Sbjct: 202 HVKPAASRKDSSERYLLATGFR 223


>gi|67459510|ref|YP_247134.1| ribosomal RNA large subunit methyltransferase J [Rickettsia felis
           URRWXCal2]
 gi|75536083|sp|Q4UKG2|RLME_RICFE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|67005043|gb|AAY61969.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia felis
           URRWXCal2]
          Length = 227

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 148/200 (74%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+LEG+R+R+AYKLL+I+ K ++   N +IVDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHGKFKLFNPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ N  N ++++ID+L++EPI  V+FF+ DF + ++ E I QA+ G  D+V+SD
Sbjct: 84  ASKLIKASDNSLNNKIISIDLLEIEPIAEVEFFQKDFFEENTEELIIQALDGKADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVKREFRT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|157964230|ref|YP_001499054.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           massiliae MTU5]
 gi|157844006|gb|ABV84507.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
           massiliae MTU5]
          Length = 272

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 151/201 (75%), Gaps = 3/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQV
Sbjct: 68  SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 127

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
           A+++  ++ NN   ++++ID+L++EP+ GV+FF+ DF + D+ E I QA+ G+  D+V+S
Sbjct: 128 ASKLIKASDNNLNNKIISIDVLEIEPVAGVEFFQKDFFEADTEELIIQALDGSRADIVMS 187

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+
Sbjct: 188 DMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVKREFK 247

Query: 202 KVIHVKPVASRAESVEMFLLA 222
            V H KP +SR+ES E++L+A
Sbjct: 248 TVKHFKPSSSRSESTEIYLVA 268


>gi|46203098|ref|ZP_00208794.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 251

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 148/213 (69%), Gaps = 4/213 (1%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KL++I+E+ ++L+  +RIVD
Sbjct: 30  QRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPGQRIVD 89

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQVAA+I G N     +V ID+L++EP+ G  F   DFLD  +   + + +G
Sbjct: 90  LGAAPGGWSQVAAKIVGENGC---IVGIDLLEIEPMAGATFITLDFLDESAPARLHELLG 146

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  DLVLSDMA  T GH+K DHLRT+ L E A  FA E+L  GG FL K FQGGT  ++L
Sbjct: 147 GKADLVLSDMAANTTGHKKTDHLRTIGLAETAAAFAAEILAPGGAFLAKVFQGGTEGELL 206

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 207 ADLKRDFAVVRHVKPAASRADSSELYVLATGFR 239


>gi|87198497|ref|YP_495754.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123490739|sp|Q2GB53|RLME_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|87134178|gb|ABD24920.1| 23S rRNA Um-2552 2'-O-methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 222

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/212 (47%), Positives = 146/212 (68%), Gaps = 6/212 (2%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +  K R+   SS  WL+R +NDPYV++A+ EGWR+R+A+KL++++EK  +L+  +R+VDL
Sbjct: 13  KTAKKRTA--SSARWLSRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDL 70

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           G +PG WSQV  +     A   ++V ID+L  EPI GV  F+ DF+  ++ E ++ A+ G
Sbjct: 71  GIAPGGWSQVVRK----KAPAAKIVGIDLLPTEPIEGVTIFEMDFMADEAPEALQSALDG 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
            PDLVLSDMA  T+GH++ DHLRTM L E A  FA++ L  GG F+ K F GGT  ++L 
Sbjct: 127 PPDLVLSDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTELLA 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +LKK+F  V H KP ASR +S E +++A+GF+
Sbjct: 187 ILKKNFTTVKHAKPPASRKDSSEWYVIAQGFK 218


>gi|182678893|ref|YP_001833039.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634776|gb|ACB95550.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 234

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/226 (47%), Positives = 143/226 (63%), Gaps = 1/226 (0%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           V   G    R L  +VK  R    SS  WL R +NDPYV RA+ EG R+R+AYKL++I+E
Sbjct: 4   VSSSGREGGRSLKTRVKTARKRSLSSTLWLERQLNDPYVARAKREGMRSRAAYKLIEIDE 63

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++  L+  +++VDLG++PG WSQVA R   S     RV+ ID+L+++P+ G +F   DFL
Sbjct: 64  RYPFLKPGQKVVDLGAAPGGWSQVAVRKVQSEQGKGRVIGIDLLEVDPMPGAEFKVLDFL 123

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  + E +   +G   D+VLSDMA    GH+K DHLR + L E A  FA  +L  GG FL
Sbjct: 124 DPAAPETLEHWLGAKADVVLSDMAANATGHKKTDHLRIVGLVELAADFASTILAPGGSFL 183

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K  QGGT N +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 184 AKVLQGGTENSLLAKLKQEFASVRHVKPQASRADSSELYMLATGFR 229


>gi|146340136|ref|YP_001205184.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
           sp. ORS278]
 gi|158514219|sp|A4YSS3|RLME_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146192942|emb|CAL76949.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
           sp. ORS278]
          Length = 231

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 138/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+ YKL++I++K+ +L+    +VDLG++PG WSQ+
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYHMLKPGMTVVDLGAAPGGWSQI 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AAR  G+ A   +VVAID+L+M  I GV F + DF   D+ E +R  IGG  D+V+SDMA
Sbjct: 82  AARRVGAEAGKGKVVAIDLLEMGEIPGVTFAQLDFHAQDAPEKLRTMIGGRADVVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA E+L  GG FL KTFQ G   ++L  LK+ +  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFLAKTFQSGADAELLAQLKRDYATVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRQDSSERYVLAMGFR 223


>gi|229586405|ref|YP_002844906.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
           ESF-5]
 gi|259494569|sp|C3PMK3|RLME_RICAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|228021455|gb|ACP53163.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
           ESF-5]
          Length = 227

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 148/200 (74%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARMDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ NN   ++++ID+L++E + GV+F + DF + D+ E I QA+ G  D+V+SD
Sbjct: 84  ASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDGRADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLYKVKREFKT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|15892128|ref|NP_359842.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
 gi|34580841|ref|ZP_00142321.1| cell division protein ftsJ [Rickettsia sibirica 246]
 gi|81528508|sp|Q92J64|RLME_RICCN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|15619256|gb|AAL02743.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
 gi|28262226|gb|EAA25730.1| cell division protein ftsJ [Rickettsia sibirica 246]
          Length = 227

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 148/200 (74%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ NN   ++++ID+L++E + GV+F + DF + D+ E I QA+ G  D+V+SD
Sbjct: 84  ASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDGRADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|157828081|ref|YP_001494323.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932781|ref|YP_001649570.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
           Iowa]
 gi|189040328|sp|B0BWD8|RLME_RICRO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040329|sp|A8GQZ0|RLME_RICRS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157800562|gb|ABV75815.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907868|gb|ABY72164.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
           Iowa]
          Length = 227

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 148/200 (74%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++   N ++VDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ NN   ++++ID+L++E + GV+F + DF + D+ E I QA+ G  D+V+SD
Sbjct: 84  ASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDGRADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|157803350|ref|YP_001491899.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           canadensis str. McKiel]
 gi|189040327|sp|A8EXN1|RLME_RICCK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157784613|gb|ABV73114.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
           canadensis str. McKiel]
          Length = 227

 Score =  211 bits (537), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 148/200 (74%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+ +G+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQ+
Sbjct: 24  SSNNWLRRQLNDPYVAKARTQGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQI 83

Query: 85  AARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ N  N ++++ID+L++ PI+GV+FF+ DF + D+ + I QA+ G  ++V+SD
Sbjct: 84  ASKLIKASDNSLNNKIISIDLLEIRPIVGVEFFQKDFFEEDTEKLIIQALDGKANIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N +L  +K  F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQALEFALKVLKPSGHFIAKIFRGGAENKLLNKVKHEFRT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP++SR+ES E++L+A
Sbjct: 204 VKHFKPLSSRSESTEIYLVA 223


>gi|85715667|ref|ZP_01046647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
 gi|85697606|gb|EAQ35483.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
          Length = 226

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 140/202 (69%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ EGWR+R+A+KL+++++KH+ L+    +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKREGWRSRAAFKLIEMDDKHRFLKPAMTVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     +V+AID+L+M  I+GV F + DFLD ++ + +   +GG  D+VLSDMA
Sbjct: 82  AAQRVGATEGKGKVIAIDLLEMPEIVGVTFARLDFLDNNAPDKLLAMMGGAADVVLSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E+A  FA ++L  GG F+ K FQ G    +L  LK+ FQ V 
Sbjct: 142 ANTTGHRKTDQLRMVGLVESAAAFAADVLRPGGTFIAKVFQSGADAGLLVQLKRDFQTVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRQDSSERYVLATGFR 223


>gi|238650351|ref|YP_002916203.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
 gi|259494570|sp|C4K0Q4|RLME_RICPU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|238624449|gb|ACR47155.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
          Length = 227

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 148/200 (74%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFIPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ NN   ++++ID+L++E + GV+F + DF + D+ E I QA+ G  D+V+SD
Sbjct: 84  ASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDGRADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|92118062|ref|YP_577791.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter hamburgensis
           X14]
 gi|122417455|sp|Q1QKB6|RLME_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91800956|gb|ABE63331.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 228

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 139/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +GWR+R+AYKL+++++K+  L+    +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGWRSRAAYKLIEMDDKYHFLKPGLAVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AAR  G+     +VVAID+L+M  I+GV F + DFLD D+ E +   + G  D+VLSDMA
Sbjct: 82  AARRVGAVDGKGKVVAIDLLEMPEIVGVTFARLDFLDADAPEKLIAMMEGGADIVLSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E+A  FA ++L  GG F+ K FQ G   D+L  LK+ F+ V 
Sbjct: 142 ANTTGHRKTDQLRIIGLVESAAAFAADVLRPGGTFIAKVFQSGADADLLVQLKRDFRTVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP +SR +S E +++A GFR
Sbjct: 202 HVKPASSRQDSSERYVMATGFR 223


>gi|209885593|ref|YP_002289450.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
           carboxidovorans OM5]
 gi|226705298|sp|B6JHM9|RLME_OLICO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|209873789|gb|ACI93585.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
           carboxidovorans OM5]
          Length = 225

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 139/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+AYKL ++++K+  L+  + +VDLG++PG WSQ+
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGFRSRAAYKLREMDDKYHFLKQGQAVVDLGAAPGGWSQI 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+ A   +V+AID+L+M  I GV F + DFL  D+ E +R  +GG  D+V+SDMA
Sbjct: 82  AAKRVGAEAGRGKVIAIDLLEMGEIPGVTFAQLDFLSDDAPEKLRAMLGGGADIVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E+A  FA E+LN GG FL K FQ G    +   LK++F  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGTFLAKVFQSGADATLQAELKRNFATVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRQDSSERYVLAMGFR 223


>gi|27379081|ref|NP_770610.1| cell division protein [Bradyrhizobium japonicum USDA 110]
 gi|81737558|sp|Q89N72|RLME_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|27352231|dbj|BAC49235.1| cell division protein [Bradyrhizobium japonicum USDA 110]
          Length = 228

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 138/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+  G+R+R+A+KLL+I++K ++L+    +VDLG++PG WSQ+
Sbjct: 22  SSKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEIDDKFRLLKHGMAVVDLGAAPGGWSQI 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  GS     +VVAID+L+M  I GV+F + DF+D D+   +   +GG  D+V+SDMA
Sbjct: 82  AAKRVGSVDGKGKVVAIDLLEMPEIAGVEFAQLDFMDNDAPAKLTAMLGGGADVVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA ++L  GG FL KTFQ G   D+L  LK+ F  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFLAKTFQSGADADLLAQLKRDFATVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRQDSSERYVLATGFR 223


>gi|157825346|ref|YP_001493066.1| ribosomal RNA large subunit methyltransferase J [Rickettsia akari
           str. Hartford]
 gi|189040325|sp|A8GMD3|RLME_RICAH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157799304|gb|ABV74558.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia akari
           str. Hartford]
          Length = 227

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 147/200 (73%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A++EG+R+R+AYKLL+I+EK ++   N +IVDLG++PG WSQV
Sbjct: 24  SSGNWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ N  N ++++ID+L++EPI+GV+F + DF + ++ E I Q + G  D+V+SD
Sbjct: 84  ASKLIKASDNSLNNKIISIDLLEIEPIIGVEFLQKDFFEENTEELIIQVLDGKADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  T GH+  DH+RT+ LCE A  FAL++L   G F+ K F+GG  N++L  +K  F+ 
Sbjct: 144 MASNTTGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVKCEFKT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KP +SR+ES E++L+A
Sbjct: 204 VKHFKPSSSRSESTEIYLVA 223


>gi|316934646|ref|YP_004109628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris DX-1]
 gi|315602360|gb|ADU44895.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris DX-1]
          Length = 237

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 136/202 (67%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+AYKL +I++K ++L+    +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKPGMAVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     +VVAID+L+M  + GV F + DFLD  + + +R  +GG  DLV+SDMA
Sbjct: 82  AAKKVGAAEGRGKVVAIDLLEMGEVPGVTFAQLDFLDPSAPDRLRDMLGGGADLVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA E+L  GG FL K FQ G    ++  LK+ +  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVETAAMFAAEVLKPGGAFLAKVFQSGADAALMAELKRDYASVK 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E +LLA GFR
Sbjct: 202 HVKPAASRKDSSERYLLATGFR 223


>gi|148255007|ref|YP_001239592.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
           sp. BTAi1]
 gi|158513280|sp|A5EHP2|RLME_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146407180|gb|ABQ35686.1| 23S rRNA Um-2552 2'-O-methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 231

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 138/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+ YKL++I++K+ +L+    +VDLG++PG WSQ+
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYHLLKPGMTVVDLGAAPGGWSQI 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AAR  G+ A   +V+AID+L+M  + GV F + DF   D+ E +R  +GG  D+V+SDMA
Sbjct: 82  AARRVGAEAGKGKVIAIDLLEMGEVPGVTFTQMDFHAQDAPEKLRAMLGGRADVVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA E+L  GG FL KTFQ G   ++L  LK+ +  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFLAKTFQSGADAELLAQLKRDYATVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRQDSSERYVLAMGFR 223


>gi|114569722|ref|YP_756402.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Maricaulis maris MCS10]
 gi|122316269|sp|Q0AQH3|RLME_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114340184|gb|ABI65464.1| 23S rRNA Um-2552 2'-O-methyltransferase [Maricaulis maris MCS10]
          Length = 279

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 145/213 (68%), Gaps = 6/213 (2%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           ++VK  R  + SS  WL R +NDPYV++AQ+EG+R+R+AYKLLQ++E+ ++L+   R+VD
Sbjct: 71  ERVKTARGRKSSSTRWLQRQLNDPYVKKAQMEGYRSRAAYKLLQLDERFKLLKPGMRVVD 130

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LGS+PG W QVA +     +  + VV ID+L+ME I G    + DF D D+   ++  +G
Sbjct: 131 LGSAPGGWVQVALK-----SGASEVVGIDLLEMEAIAGATLLEKDFTDADAPSLVKAEMG 185

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  D V+SD+A  T GH+  DHLR ++L E A  FA+E L  GG F+ K FQGG+ +D+L
Sbjct: 186 GAADAVVSDLAPWTTGHKTTDHLRIVALAELAAHFAVETLKPGGFFIAKVFQGGSDSDLL 245

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK +F+KV H KP ASR+ES E F++A GF+
Sbjct: 246 NFLKANFEKVRHFKPDASRSESAETFVVAMGFK 278


>gi|56551298|ref|YP_162137.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241760953|ref|ZP_04759042.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753080|ref|YP_003225973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|81355445|sp|Q5NQH8|RLME_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56542872|gb|AAV89026.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374572|gb|EER64033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552443|gb|ACV75389.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 221

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/213 (48%), Positives = 144/213 (67%), Gaps = 5/213 (2%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           Q+VK  R    +S  WL R +NDPYVQ+AQ EG+R+R+A+KL++++E+  +L++ RRI+D
Sbjct: 7   QRVKTARRRTAASTRWLERQLNDPYVQKAQAEGYRSRAAFKLIELDERFSLLKNARRIID 66

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG +PG WSQVA +     A   ++V ID+L+  PI GV  F+ DF D ++ + + +A+G
Sbjct: 67  LGIAPGGWSQVARK----KAPQAKIVGIDLLEAAPIEGVTIFQNDFTDPEAQKKLIEALG 122

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  DLVLSDMA  TIGH + DHLRTM+L E A  FA E L  GG F+ K   GG   D++
Sbjct: 123 GAADLVLSDMAANTIGHAQTDHLRTMALVEEAAVFASETLREGGSFVAKVLAGGADKDLV 182

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            LLK+ F +V H KP ASR ES E +++A+ FR
Sbjct: 183 ALLKRLFGQVKHAKPPASRRESSEWYVIAQNFR 215


>gi|299133659|ref|ZP_07026853.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
 gi|298591495|gb|EFI51696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
          Length = 226

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 139/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+AYKL ++++K+  L+  + +VDLG++PG WSQ+
Sbjct: 22  SSKLWLERQLNDPYVMQAKRDGYRSRAAYKLREMDDKYHFLKQGQAVVDLGAAPGGWSQI 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+ A   +V+AID+L+M  I GV F + DFL  D+ E +R  +GG  D+V+SDMA
Sbjct: 82  AAKRVGAEAGKGKVIAIDLLEMGEIPGVTFAQLDFLADDAPEKLRAMLGGGADIVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E+A  FA E+LN GG FL K FQ G    +   LK++F  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGVFLAKVFQSGADATLQNELKRNFATVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRQDSSERYVLAMGFR 223


>gi|149185550|ref|ZP_01863866.1| 23S rRNA methylase [Erythrobacter sp. SD-21]
 gi|148830770|gb|EDL49205.1| 23S rRNA methylase [Erythrobacter sp. SD-21]
          Length = 219

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 151/221 (68%), Gaps = 7/221 (3%)

Query: 9   SRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           SR G  +  + R+ +    SS  WL R +NDPYV++A+ +G+R+R+AYKL++++EK  +L
Sbjct: 2   SRSGKDKDTRVRTAKKRSESSTRWLQRQLNDPYVKQAKADGYRSRAAYKLIEMDEKFGLL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   RIVDLG +PG WSQVA ++         VV ID+L+ EPI GV  F+ DF+D D+ 
Sbjct: 62  KGASRIVDLGITPGGWSQVARKVR----PKATVVGIDLLETEPIEGVTIFQMDFMDDDAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + +A+GG  DLV+SDMA  T+GH++ DHLRTM L EAA +FA+E L+ GG FL K   
Sbjct: 118 RVLEEALGGKADLVMSDMAANTVGHKQTDHLRTMGLVEAAAWFAVENLDTGGTFLAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  D+L LLKKHF+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDKDLLDLLKKHFKTVKHAKPPASRKGSSEWYVIAQGFK 218


>gi|51473362|ref|YP_067119.1| rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA
           methyltransferase) [Rickettsia typhi str. Wilmington]
 gi|81390247|sp|Q68XK5|RLME_RICTY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|51459674|gb|AAU03637.1| rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA
           methyltransferase) [Rickettsia typhi str. Wilmington]
          Length = 227

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 145/200 (72%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+LEG+R+R+AYKLL+I++K ++   N +IVDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHDKFRLFTPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ NN   ++++ID+L +EPI+GV+F + DF + D+ E I   + G  DLV+SD
Sbjct: 84  ASKLIKASDNNLNNKIISIDLLKIEPIVGVEFLQKDFFEKDTEELIIHGLDGKADLVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L     F+ K F+GG    +L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSCHFIAKIFRGGAETALLNKVKREFRT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KPV+SR+ES E++L+A
Sbjct: 204 VKHFKPVSSRSESTEIYLVA 223


>gi|84687207|ref|ZP_01015088.1| ribosomal RNA large subunit methyltransferase J [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664795|gb|EAQ11278.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2654]
          Length = 238

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 156/237 (65%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQK---VKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M KPPG  +  G  Q+   VK +S +G   SS  WL R +NDPYV+RA+ EG+R R+A+K
Sbjct: 1   MTKPPGKKNASGRGQRDLRVKVKSARGRKLSSTRWLERQLNDPYVKRARDEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITG-SNANNTRV---VAIDILDMEPI 109
           +L+I+EK + L    R+VDLG +PG W QVA  R+        T+V   + +D+ ++EP+
Sbjct: 61  ILEIDEKFRFLVPGARVVDLGCAPGGWLQVAVERVNALGEKKGTKVGTVLGVDLQEVEPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G + ++ DF++ D+ E +++ +GG  D+V+SDMA  + GH++ DHLR ++LCE A +FA
Sbjct: 121 AGAEAYQLDFMEDDADEKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ F KV+++KP ASR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGDLQKLLKQKFTKVVNIKPPASRSDSSEKFVVATGFR 237


>gi|288958935|ref|YP_003449276.1| cell division protein methyltransferase [Azospirillum sp. B510]
 gi|288911243|dbj|BAI72732.1| cell division protein methyltransferase [Azospirillum sp. B510]
          Length = 235

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 136/202 (67%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL RH+NDPYV  A   G+R+R+A+KLLQ++EK ++L   +R+VDLG++PG W+Q+
Sbjct: 28  SSKRWLERHLNDPYVAEATKRGYRSRAAFKLLQLDEKFRLLGPGKRVVDLGAAPGGWTQI 87

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           A           +VV +DIL M+P+ G    + DFL+  + + +++A+GG  DLVLSDMA
Sbjct: 88  AVEKVQVAREGWKVVGLDILPMDPVPGATTMQADFLEEGAADRLKEALGGPADLVLSDMA 147

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
            PT GH++ DHLR M L EAA  FA E+L  GG F+ K FQGG    +L  L++ F  V 
Sbjct: 148 APTTGHQQTDHLRIMGLAEAAYDFAEEVLAPGGAFVAKLFQGGAERSLLDRLRRDFAVVK 207

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           H KP ASRAES E +++A GFR
Sbjct: 208 HAKPPASRAESSETYVVATGFR 229


>gi|110680244|ref|YP_683251.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter denitrificans OCh 114]
 gi|123361756|sp|Q164M8|RLME_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|109456360|gb|ABG32565.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter denitrificans OCh 114]
          Length = 240

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 151/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K PGS +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RA+ EG+R R+AYK
Sbjct: 1   MAKKPGSQNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPI 109
           +L+++++ + L    R+VDLG +PG W QVA +   +    T      V+ +D+ +MEPI
Sbjct: 61  ILELDDRFRFLVPGARVVDLGCAPGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G   ++ DF+  D+ E +R  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGATLYQLDFMADDADEQVRVWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV ++KP ASR +S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQRFAKVANIKPPASRQDSSEKFVVATGFR 237


>gi|85374883|ref|YP_458945.1| 23S rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|122543835|sp|Q2N843|RLME_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84787966|gb|ABC64148.1| 23S rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 220

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 145/221 (65%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S S +   ++VK  R    SS  WL R +NDPYV++A+ +G+R+R+AYKL++++ K  IL
Sbjct: 2   SRSGKDPGKRVKTARKRSASSTRWLERQLNDPYVKQAKADGYRSRAAYKLIELDGKFGIL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   R+VDLG +PG W+QV  ++         +V ID+L+ EPI GV   + DF+  ++ 
Sbjct: 62  KGASRVVDLGIAPGGWAQVVRKVR----PKAGIVGIDLLETEPIEGVTILQMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             +  A+ G PDLV+SDMA  T+GH++ DHLRTM L EAA +FA+E L  GG FL K   
Sbjct: 118 AGLEAALDGPPDLVMSDMAANTVGHKQTDHLRTMGLVEAAAWFAIETLEEGGTFLAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT ND+L LLK HF+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDNDLLKLLKSHFKTVKHAKPPASRKGSSEWYVVAQGFK 218


>gi|326386107|ref|ZP_08207731.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209332|gb|EGD60125.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score =  207 bits (527), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 145/221 (65%), Gaps = 7/221 (3%)

Query: 9   SRRGLTQKVKNRSCQ---GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           SR G     + R+ +    SS  WL R +NDPYVQ+A+ EGWR+R+A+K+++++EK  +L
Sbjct: 2   SRSGRDPGTRLRTAKKRTASSARWLTRQLNDPYVQKARAEGWRSRAAFKMIELDEKFALL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  RR+VDLG +PG WSQV  +     A   +VV ID+L  +PI GV  F+ DF+  ++ 
Sbjct: 62  KGARRVVDLGIAPGGWSQVVRQ----RAPLAKVVGIDLLPTDPIEGVTIFQMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E +  A+ G PDLV+SDMA  T+GH++ DHLRTM L E A  FA+  L  GG F+ K F 
Sbjct: 118 EALTGALDGPPDLVISDMAANTVGHKQTDHLRTMGLVETAVDFAITHLAPGGAFVAKVFA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT   +L LLK++F  V H KP ASR +S E +++A+GF+
Sbjct: 178 GGTDTTLLNLLKRNFTTVKHAKPPASRKDSSEWYVIAQGFK 218


>gi|15604038|ref|NP_220553.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
           Madrid E]
 gi|9910874|sp|Q9ZE00|RLME_RICPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|3860729|emb|CAA14630.1| CELL DIVISION PROTEIN FTSJ (ftsJ) [Rickettsia prowazekii]
 gi|292571757|gb|ADE29672.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
           prowazekii Rp22]
          Length = 227

 Score =  207 bits (527), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 145/200 (72%), Gaps = 2/200 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL R +NDPYV +A+LEG+R+R+AYKLL+I+ K ++   N +IVDLG++PG WSQV
Sbjct: 24  SSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHYKFRLFTPNMKIVDLGAAPGGWSQV 83

Query: 85  AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
           A+++  ++ NN   ++++ID+L++EPI+GV+F + DF + D+ E I   + G  D+V+SD
Sbjct: 84  ASKLIKASDNNLNNKIISIDLLEIEPIVGVEFLQKDFFEKDTEELIIHNLEGKADIVMSD 143

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  TIGH+  DH+RT+ LCE A  FAL++L     F+ K F+GG    +L  +K+ F+ 
Sbjct: 144 MASNTIGHKATDHMRTLLLCEQAFEFALKVLKPSCHFIAKIFRGGAETALLNKVKREFRT 203

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V H KPV+SR+ES E++L+A
Sbjct: 204 VKHFKPVSSRSESTEIYLVA 223


>gi|163731318|ref|ZP_02138765.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter litoralis Och 149]
 gi|161394772|gb|EDQ19094.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter litoralis Och 149]
          Length = 240

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 152/237 (64%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           MVK PGS +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RA+ EG+R R+AYK
Sbjct: 1   MVKKPGSQNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPI 109
           +L+++++ + L    R+VDLG +PG W QVA +   +    T      V+ +D+ +MEPI
Sbjct: 61  ILELDDRFRFLVPGARVVDLGCAPGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G   ++ DF+  D+ + +R  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGADLYQLDFMADDADQQVRAWMGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV ++KP ASR +S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQRFTKVSNIKPPASRQDSSEKFVVATGFR 237


>gi|126726913|ref|ZP_01742752.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2150]
 gi|126703871|gb|EBA02965.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2150]
          Length = 235

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 150/234 (64%), Gaps = 8/234 (3%)

Query: 1   MVKPPGSSSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K   ++S RG    K+K +S +G   SS  WL R +NDPYV+RAQ +G+R R+AYK+L
Sbjct: 1   MAKKTKNTSGRGERDLKIKVKSARGRKLSSTLWLQRQLNDPYVRRAQDDGYRGRAAYKIL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT----RVVAIDILDMEPILGV 112
           ++NEK   L +  R+VDLG +PG W QVA     S    +    ++V +D+  ME I G 
Sbjct: 61  ELNEKFNFLTAGARVVDLGCAPGGWCQVAVPRVNSLGTKSGKVGKIVGVDLQVMESISGC 120

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
             ++ DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHL+ M+LCEAA +FA ++
Sbjct: 121 DLYQLDFMDEGADDKVKEWLGGKADVVMSDMAASSSGHKQTDHLKIMALCEAAAYFAFDV 180

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ KT  GG   D+  LLK+ F KV +VKP ASRA S E F++A GFR
Sbjct: 181 LEDGGTFIAKTLAGGAEGDLQKLLKQKFTKVANVKPPASRANSSEKFVVATGFR 234


>gi|255263254|ref|ZP_05342596.1| ribosomal RNA large subunit methyltransferase J [Thalassiobium sp.
           R2A62]
 gi|255105589|gb|EET48263.1| ribosomal RNA large subunit methyltransferase J [Thalassiobium sp.
           R2A62]
          Length = 237

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 156/233 (66%), Gaps = 9/233 (3%)

Query: 3   KPPGSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           KP G++S RG   LT KVK+ R  + SS  WL R +NDPYV+RA+ +G+R R+AYK+L++
Sbjct: 4   KPTGNTSGRGQRDLTVKVKSARGRKMSSTLWLQRQLNDPYVKRAKADGYRGRAAYKILEL 63

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSNANNTR--VVAIDILDMEPILGVK 113
           ++K++ L    RIVDLG++PG W QVA +   + G   +  +  ++ +D+ +MEPI G +
Sbjct: 64  DDKYRFLVPGARIVDLGAAPGGWCQVAVKRCNVLGQKTSKAQGTILGVDLQEMEPIAGCE 123

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             + DF++ D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA +FA ++L
Sbjct: 124 LHQLDFMEDDADLKVKEWLGGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFAFDVL 183

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F+ K   GG   D+  LLK  F KV +VKP ASR++S E F++A GF+
Sbjct: 184 EEGGTFVAKVLAGGAEGDLQKLLKTKFTKVANVKPPASRSDSSEKFVVATGFK 236


>gi|91976736|ref|YP_569395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB5]
 gi|123762792|sp|Q138J5|RLME_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91683192|gb|ABE39494.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB5]
          Length = 235

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/202 (48%), Positives = 138/202 (68%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G+R+R+AYKLL+I++K+  L+S   + DLG++PG WSQ+
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKYHFLKSGLAVADLGAAPGGWSQI 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     +V+AID+L+M  I GV F + DFLD  + + +R+ +GG  D+V+SDMA
Sbjct: 82  AAKRVGAPDGRGKVIAIDLLEMGEIPGVTFAQLDFLDDAAPDRLREMLGGGADVVMSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E+A  FA E+L  GG F+ K FQ G    ++  LK+ F  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVESAAQFASEVLKPGGTFVAKVFQSGADATLMTQLKRDFATVK 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E ++LA GFR
Sbjct: 202 HVKPAASRKDSSERYVLAMGFR 223


>gi|126737830|ref|ZP_01753560.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           SK209-2-6]
 gi|126721223|gb|EBA17927.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           SK209-2-6]
          Length = 238

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 153/237 (64%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKTPTGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVRRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNANNTR----VVAIDILDMEPI 109
           ++++++K + L    R+VDLG +PG WSQVA  RI      + +    ++ +D+ ++EP+
Sbjct: 61  IMELDDKFRFLVPGARVVDLGCAPGGWSQVAVKRINALGERSGKAIGTILGVDLQEIEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F + DF+D  + E ++  +GGN D+V+SDMA  + GH++ DHLR MSLCE A +F+
Sbjct: 121 AGAEFHQLDFMDEGADEQVKTWLGGNADVVMSDMAAASSGHKQTDHLRIMSLCETAAYFS 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV +VKP ASR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQKFTKVANVKPPASRSDSSEKFVVAMGFR 237


>gi|83945237|ref|ZP_00957586.1| Ribosomal RNA large subunit methyltransferase J [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851407|gb|EAP89263.1| Ribosomal RNA large subunit methyltransferase J [Oceanicaulis
           alexandrii HTCC2633]
          Length = 253

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 148/224 (66%), Gaps = 8/224 (3%)

Query: 6   GSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           G  +R     + + ++ +G   SS+ WL R +NDPYV RA+ EG+R+R+AYKL+++++K 
Sbjct: 25  GGDARSAKQFRTRVKTARGRKYSSKLWLERQLNDPYVARAKQEGYRSRAAYKLIELDDKF 84

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
            +++   R+ DLG++PG W+QVA +    +     V  +D+L++EPI G    + DF + 
Sbjct: 85  GLIKPGMRVADLGAAPGGWTQVALKRGAEH-----VAGVDLLEIEPIAGAILMQLDFTEE 139

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + + ++ A+GG  DLV+SD+A  T GH+  DHLR ++L E A +FAL++L  GG F+ K
Sbjct: 140 GAEDKLKAALGGPADLVISDLAPWTTGHKSTDHLRIVALVETAAYFALDVLKPGGGFIAK 199

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FQGG T ++L LLK  F+KV H KP ASR+ES E FLLA GFR
Sbjct: 200 VFQGGATGELLDLLKHRFEKVRHYKPPASRSESAETFLLATGFR 243


>gi|260433766|ref|ZP_05787737.1| ribosomal RNA large subunit methyltransferase J [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417594|gb|EEX10853.1| ribosomal RNA large subunit methyltransferase J [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 238

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 152/237 (64%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKKPSGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-----RVVAIDILDMEPI 109
           +L++++K++ L    R+VDLG +PG W QVA +   +    +      V+ ID+ ++EPI
Sbjct: 61  ILELDDKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGEKSGKKVGTVLGIDLQEVEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF++  + E +++ +GG  D+V+SDMA  + GH++ DHLR ++LCE A +FA
Sbjct: 121 AGAEIHQLDFMEDGADEKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ F+KV +VKP ASR++S E F++A GFR
Sbjct: 181 FDVLEKGGTFVAKVLAGGAEGDLQKLLKQKFEKVANVKPPASRSDSSEKFVVATGFR 237


>gi|126735777|ref|ZP_01751522.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. CCS2]
 gi|126714964|gb|EBA11830.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. CCS2]
          Length = 241

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 148/223 (66%), Gaps = 6/223 (2%)

Query: 10  RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK+L++++K++ L   
Sbjct: 15  QRDLTVKVKTARGRKLSSTQWLQRQLNDPYVKRAQTEGYRGRAAYKILELDDKYRFLVPG 74

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKFDFLDLD 123
            RIVDLG +PG W QVA +   +    T      V+ +D+ ++EP+ G + ++ DF++ D
Sbjct: 75  ARIVDLGCAPGGWLQVAVKRANTLGERTSKAQGYVLGVDLQEVEPVAGAEIYQLDFMEDD 134

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           +   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA +FA ++L  GG F+ K 
Sbjct: 135 ADLKVKEWLGGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKV 194

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG   D+  LLK  F+KV +VKP ASR++S E F++A GF+
Sbjct: 195 LAGGAEGDLQKLLKARFKKVANVKPPASRSDSSEKFVVATGFK 237


>gi|114798748|ref|YP_760506.1| putative ribosomal RNA large subunit methyltransferase J
           [Hyphomonas neptunium ATCC 15444]
 gi|123028016|sp|Q0C187|RLME_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114738922|gb|ABI77047.1| putative ribosomal RNA large subunit methyltransferase J
           [Hyphomonas neptunium ATCC 15444]
          Length = 234

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/230 (45%), Positives = 149/230 (64%), Gaps = 10/230 (4%)

Query: 3   KPPG----SSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           K PG     S RR   +KV  R+ +  SS+ W+ R + DPYV++A+ EG+R+R+AYKLL+
Sbjct: 10  KGPGPERQDSGRRSTERKVIARNARTESSKRWIERQLQDPYVRKAKDEGYRSRAAYKLLE 69

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+   +IL+   R+VDLG +PG W QV+ +   +      VV ID+L ++PI G    + 
Sbjct: 70  IDAAAKILRKGMRVVDLGCAPGGWIQVSLQQGAAE-----VVGIDLLPLDPIEGATIIEG 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D  + D    +   + G PDL+LSDMA  T GH++ DHLRT++L E A  FA+E L+ GG
Sbjct: 125 DVNNPDDVARMMAGLSGTPDLILSDMAANTTGHKQTDHLRTVALVEMAVAFAIEHLDDGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F  K FQGG T D+L LLK+HF+ V H+KP ASRA S E++++AKGFR+
Sbjct: 185 AFCAKVFQGGATKDVLNLLKQHFRTVKHIKPAASRAGSPEIYVVAKGFRR 234


>gi|56696734|ref|YP_167095.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
           DSS-3]
 gi|81349883|sp|Q5LSB0|RLME_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56678471|gb|AAV95137.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
           DSS-3]
          Length = 233

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 149/232 (64%), Gaps = 6/232 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K      +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K+L+++
Sbjct: 1   MAKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKILELD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKF 114
           EK++ L    R+VDLG +PG W QVA +        S+    RV+ ID+ ++EPI G + 
Sbjct: 61  EKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGERSDKRVGRVLGIDLQEVEPIAGAEI 120

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            + DFLD  + + I++ +GG  D+V+SDMA  + GH++ DH+R ++LCEAA + A ++L 
Sbjct: 121 HQLDFLDDGADDRIKEWLGGKADVVMSDMAASSSGHKQTDHMRIIALCEAAAYLAFDVLE 180

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K   GG   D+  LLK+ F KV +VKP ASR++S E F++A GFR
Sbjct: 181 EGGTFVAKVLAGGAEGDLQKLLKQKFTKVANVKPPASRSDSSEKFVVATGFR 232


>gi|103488231|ref|YP_617792.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingopyxis alaskensis
           RB2256]
 gi|123379512|sp|Q1GPG3|RLME_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|98978308|gb|ABF54459.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingopyxis alaskensis
           RB2256]
          Length = 230

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 139/213 (65%), Gaps = 6/213 (2%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
            +  K RS   SS  WL R +NDPYV+RAQ EG+R+R+AYKL++++EK  +L+ +R +VD
Sbjct: 18  VKTAKRRSV--SSTRWLQRQLNDPYVRRAQAEGYRSRAAYKLIELDEKFGLLKKSRAVVD 75

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG +PG WSQV  +         RV  ID+L  EPI GV   + DF+D  + + +  A+G
Sbjct: 76  LGIAPGGWSQVVRKAN----PRARVAGIDLLPCEPIEGVAILEMDFMDDAAPDALIAALG 131

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G PDLV+SDMA  T+GH + DHLRT+ L E A  FA+  L  GG F+ K F GG   ++L
Sbjct: 132 GAPDLVISDMAANTVGHPQTDHLRTIGLAETAADFAVRNLLPGGAFVAKVFAGGADRELL 191

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            LLK+HF  V H KP ASR  S E++++A+GF+
Sbjct: 192 TLLKRHFTTVKHAKPPASRKGSPELYVIAQGFK 224


>gi|99081023|ref|YP_613177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
 gi|123077672|sp|Q1GHF1|RLME_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|99037303|gb|ABF63915.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
          Length = 238

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 154/234 (65%), Gaps = 10/234 (4%)

Query: 3   KPPGSSS----RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           KP G ++    +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K+++
Sbjct: 4   KPTGKNTSGRGQRDLTVKVKTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIME 63

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAA-RITG----SNANNTRVVAIDILDMEPILGV 112
           +++K++ L    R+VDLG +PG W+QVA  RI      S     R + ID+ ++EP+ G 
Sbjct: 64  LDDKYRFLVPGARVVDLGCAPGGWAQVAVPRINALGEKSGKAIGRFIGIDLQEVEPLAGA 123

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR MSLCE A +FA ++
Sbjct: 124 EFHQLDFMDEGADDQVKEWLGGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFAFDV 183

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ K   GG   ++  LLK+ F+ V +VKP +SRA+S E F++A GFR
Sbjct: 184 LEEGGTFVAKVLAGGAEGELQKLLKQKFKSVANVKPPSSRADSSEKFVVATGFR 237


>gi|332188162|ref|ZP_08389891.1| ftsJ-like methyltransferase family protein [Sphingomonas sp. S17]
 gi|332011769|gb|EGI53845.1| ftsJ-like methyltransferase family protein [Sphingomonas sp. S17]
          Length = 231

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/223 (46%), Positives = 148/223 (66%), Gaps = 9/223 (4%)

Query: 7   SSSRRGLTQKVK---NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           S    GL Q+V+   NR+ Q  S  WL R +NDPYV+RA+ EG+R+R+AYKL++++E+  
Sbjct: 2   SRGNSGLHQRVRTARNRTAQ--STRWLERQLNDPYVRRAKAEGYRSRAAYKLIELDERFG 59

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  +RI+DLG +PG WSQV  R       N  VV ID+L ++PI GV  F+ DF+D  
Sbjct: 60  FLRGKKRIIDLGIAPGGWSQVVRR----KLPNAAVVGIDLLPVDPIDGVTIFEMDFMDDA 115

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + + +A+GG PDLV+SDMA  T+GH + D LRTM L E A  FA ++L+ GG F+ K 
Sbjct: 116 APDRLMEALGGAPDLVMSDMAANTVGHPQTDALRTMGLVETAFAFACDVLSPGGVFVSKV 175

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           F GG  + ++  +K+HF  V H KP +SR  SVE F++A+GF+
Sbjct: 176 FAGGADSQLVAEMKRHFATVKHAKPPSSRKGSVEWFVVAQGFK 218


>gi|323136970|ref|ZP_08072050.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocystis sp. ATCC
           49242]
 gi|322397731|gb|EFY00253.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocystis sp. ATCC
           49242]
          Length = 242

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 147/225 (65%), Gaps = 1/225 (0%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K  G    R L  +VK  R    SS  WL R +NDPYV RA+ EG+R+R+AYKL++++++
Sbjct: 6   KISGREGGRSLKTRVKTARKRSLSSTLWLERQLNDPYVARAKREGYRSRAAYKLIEMDDR 65

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
           + + +   RIVDLG++PG WSQVAA    +     +VV +D+LDMEPI GV F   DF D
Sbjct: 66  YHLFKPGGRIVDLGAAPGGWSQVAADRVKAKDGRGKVVGVDLLDMEPITGVTFAVKDFND 125

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+ +F++  +GG  D V+SDMA    GH++ DHLR ++L E A  FA+++L  GG F+ 
Sbjct: 126 DDAPDFVKAMLGGEADGVMSDMAANATGHKQTDHLRIVALAELAAEFAMDVLAAGGFFVA 185

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  QGGT   +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 186 KVLQGGTEGQLLTRLKRDFATVRHVKPAASRADSAELYVLATGFR 230


>gi|163736478|ref|ZP_02143897.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Phaeobacter
           gallaeciensis BS107]
 gi|161390348|gb|EDQ14698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Phaeobacter
           gallaeciensis BS107]
          Length = 251

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 152/235 (64%), Gaps = 11/235 (4%)

Query: 3   KPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RAQ EG+R R+AYK++
Sbjct: 8   KTPTGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIM 67

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSNANNT--RVVAIDILDMEPILG 111
           ++++K + L +  R+VDLG +PG W+QVA +     G        R++ +D+ ++EP+ G
Sbjct: 68  EVDDKFRFLINGARVVDLGCAPGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAG 127

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA +
Sbjct: 128 AEFHQLDFMDDGADDKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFD 187

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG   ++  LLK+ F KV HVKP +SR++S E F++A GFR
Sbjct: 188 VLEDGGTFVAKVLAGGAEGELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242


>gi|163743278|ref|ZP_02150659.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
           gallaeciensis 2.10]
 gi|161383466|gb|EDQ07854.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
           gallaeciensis 2.10]
          Length = 251

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 147/219 (67%), Gaps = 8/219 (3%)

Query: 16  KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           KVK ++ +G   SS  WL R +NDPYV+RAQ EG+R R+AYK++++++K + L +  R+V
Sbjct: 24  KVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLINGARVV 83

Query: 73  DLGSSPGSWSQVAAR---ITGSNANNT--RVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLG +PG W+QVA +     G        R++ +D+ ++EP+ G +F + DF+D  + + 
Sbjct: 84  DLGCAPGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGAEFHQLDFMDDGADDK 143

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA ++L  GG F+ K   GG
Sbjct: 144 VKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDGGTFVAKVLAGG 203

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              ++  LLK+ F KV HVKP +SR++S E F++A GFR
Sbjct: 204 AEGELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242


>gi|259418917|ref|ZP_05742834.1| ribosomal RNA large subunit methyltransferase J [Silicibacter sp.
           TrichCH4B]
 gi|259345139|gb|EEW56993.1| ribosomal RNA large subunit methyltransferase J [Silicibacter sp.
           TrichCH4B]
          Length = 238

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 154/234 (65%), Gaps = 10/234 (4%)

Query: 3   KPPGSSS----RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           KP G ++    +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K+++
Sbjct: 4   KPTGKNTSGRGQRDLTVKVKTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIME 63

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAA-RITG----SNANNTRVVAIDILDMEPILGV 112
           +++K++ L    R+VDLG +PG W+QVA  RI      S     R + +D+ ++EP+ G 
Sbjct: 64  LDDKYRFLVPGARVVDLGCAPGGWAQVAVPRINALGEKSGKAIGRFIGVDLQEVEPLAGA 123

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR MSLCE A +FA ++
Sbjct: 124 EFHQLDFMDEGADDQVKEWLGGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFAFDV 183

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ K   GG   ++  LLK+ F+ V +VKP +SRA+S E F++A GFR
Sbjct: 184 LEEGGTFVAKVLAGGAEGELQKLLKQKFKSVANVKPPSSRADSSEKFVIATGFR 237


>gi|254475869|ref|ZP_05089255.1| ribosomal RNA large subunit methyltransferase J [Ruegeria sp. R11]
 gi|214030112|gb|EEB70947.1| ribosomal RNA large subunit methyltransferase J [Ruegeria sp. R11]
          Length = 257

 Score =  204 bits (519), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 155/233 (66%), Gaps = 10/233 (4%)

Query: 4   PPG-SSSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           P G ++S RG  + KVK +S +G   SS  WL R +NDPYV+RAQ EG+R R+AYK++++
Sbjct: 10  PTGKNTSGRGQRELKVKVKSARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEV 69

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSNANNT--RVVAIDILDMEPILGVK 113
           ++K + L +  R+VDLG +PG W+QVA +     G     +  R++ +D+ ++EP+ G +
Sbjct: 70  DDKFRFLVNGARVVDLGCAPGGWAQVAVKRINALGEKPGKSVGRIIGVDLQEVEPLAGAE 129

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           F + DF+   + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA ++L
Sbjct: 130 FHQLDFMSDGADDKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVL 189

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F+ K   GG   ++  LLK+ F KV HVKP +SR++S E F++A GFR
Sbjct: 190 EEGGTFVAKVLAGGAEGELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242


>gi|89068308|ref|ZP_01155718.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           granulosus HTCC2516]
 gi|89046225|gb|EAR52283.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           granulosus HTCC2516]
          Length = 236

 Score =  204 bits (519), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 106/235 (45%), Positives = 151/235 (64%), Gaps = 9/235 (3%)

Query: 1   MVKPPGSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K    SS RG   LT KVK  R  + SS  WL R +NDPYV+RA+ +G+R R+AYK+L
Sbjct: 1   MAKKTRKSSGRGQRDLTVKVKTARGRKLSSTLWLQRQLNDPYVKRAKADGYRGRAAYKIL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILG 111
           ++++K++ L    R+VDLG +PG W QVA R T      S+    +V+ ID+ ++EPI G
Sbjct: 61  ELDDKYRFLVPGARVVDLGCAPGGWCQVAVRRTNALGERSDKAVGKVLGIDLQEVEPIAG 120

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  + DFL  D+ E ++  + G  D+V+SDMA    GH++ DHLR ++LCEAA +FA +
Sbjct: 121 AEIHQLDFLADDADEQVKDWLAGPADVVMSDMAASASGHKQTDHLRIVALCEAAAYFAFD 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG    +  LLK+ F KV++VKP ASRA+S E F++A GFR
Sbjct: 181 VLVEGGTFVAKVLAGGAEGSLQTLLKQRFTKVVNVKPPASRADSSEKFVVATGFR 235


>gi|75676335|ref|YP_318756.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter winogradskyi
           Nb-255]
 gi|83305662|sp|Q3SQN7|RLME_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|74421205|gb|ABA05404.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter winogradskyi
           Nb-255]
          Length = 230

 Score =  204 bits (519), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 137/202 (67%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +GWR+R+++KL+++++KH+ L+    +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGWRSRASFKLIEMDDKHRFLKPGMTVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     RV+AID+L+M  I+GV F + DFLD  + + +   + G  D+VLSDMA
Sbjct: 82  AAKRVGAAEGKGRVIAIDLLEMPEIVGVTFARLDFLDDSAPDKLLAMMDGAADVVLSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E+A  F  ++L  GG F+ K FQ G    +L  LK+ FQ V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVESAAAFTSDVLRPGGTFIAKVFQSGADAGLLVQLKRDFQTVR 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP ASR +S E +++A GFR
Sbjct: 202 HVKPAASRQDSSERYVMATGFR 223


>gi|300022350|ref|YP_003754961.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524171|gb|ADJ22640.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 242

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 145/222 (65%), Gaps = 2/222 (0%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S  +R L   VK  R    SS  WL R +NDPYV  ++ EG R+R+AYKL +I+ ++  L
Sbjct: 16  SGGQRQLHTAVKTARKRSVSSARWLERQLNDPYVAASKREGLRSRAAYKLREIDARYNFL 75

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R++DLG++PG WSQVAA    S     +VVAID L  EPI GV   + DF D ++ 
Sbjct: 76  KPGQRVIDLGAAPGGWSQVAAESVKSVGGKGQVVAIDYLSFEPIPGVDIIEMDFTDPNAE 135

Query: 126 EFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           + ++  + GG  D+VLSDMA PT+GH K DHLR M L EAA  FA ++L  GG FL K F
Sbjct: 136 DLLKSRLRGGKADVVLSDMAAPTVGHAKTDHLRIMGLAEAAAAFAADVLEPGGVFLCKVF 195

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           QGGT  D+L +LK+ F+ V HVKP ASR ES E+++LA GFR
Sbjct: 196 QGGTERDLLDMLKRDFKVVRHVKPPASRQESSELYVLATGFR 237


>gi|209963501|ref|YP_002296416.1| ribosomal RNA large subunit methyltransferase J,RrmJ
           [Rhodospirillum centenum SW]
 gi|209956967|gb|ACI97603.1| ribosomal RNA large subunit methyltransferase J,RrmJ
           [Rhodospirillum centenum SW]
          Length = 227

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 140/212 (66%), Gaps = 2/212 (0%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K  +R    S+R WL R +NDPYV  A+  G+R+R+A+KLLQ++EK   L+  +RIVDLG
Sbjct: 4   KTAHRRSLSSTR-WLERQLNDPYVAEARKRGYRSRAAFKLLQLDEKFHFLRRGQRIVDLG 62

Query: 76  SSPGSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           ++PG W+QVA  +      +T +VV +D+L++EP+ G    + DFLD  + + +++ +GG
Sbjct: 63  AAPGGWTQVAVAVVKPGEGSTGKVVGLDLLEVEPVPGATIIQLDFLDASAPDRLKELLGG 122

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA  T GH   DHLR + L EAA  FA ++L  GG F+ K FQGG T  +L 
Sbjct: 123 QADIVLSDMAANTTGHPATDHLRIIGLAEAAYDFAADVLAPGGAFVCKLFQGGATKGLLD 182

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LLK+ F  V H KP ASRA+S E +++A GFR
Sbjct: 183 LLKRDFATVRHAKPPASRADSSETYVVATGFR 214


>gi|115525274|ref|YP_782185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisA53]
 gi|122295646|sp|Q07LH9|RLME_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115519221|gb|ABJ07205.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisA53]
          Length = 235

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/220 (46%), Positives = 143/220 (65%), Gaps = 1/220 (0%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S+ R  +T K   R  + SS+ WL R +NDPYV +A+ +G+R+R+AYKLL+I++KH  L+
Sbjct: 5   STGRMRVTVKSAGR-MKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKHHFLK 63

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
               +VDLG++PG WSQ+AA+  G+     +VVAID+L+M  I+GV F + DFL   + E
Sbjct: 64  PGASVVDLGAAPGGWSQIAAKRVGATEGKGKVVAIDLLEMPEIVGVTFAQLDFLSPAAPE 123

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
            +   IGG  D+V+SDMA  T GHRK D LR + L E A  FA ++L  GG F+ K FQ 
Sbjct: 124 KLLAMIGGRVDVVMSDMAANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTFVAKVFQS 183

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G    ++  LK+ F  V H+KP ASR +S E ++LA GFR
Sbjct: 184 GADATLMTQLKRDFASVKHLKPQASRKDSSERYVLALGFR 223


>gi|254464047|ref|ZP_05077458.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium Y4I]
 gi|206684955|gb|EDZ45437.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium Y4I]
          Length = 238

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 154/237 (64%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKTPTGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-----RVVAIDILDMEPI 109
           ++++++K + L +  R+VDLG +PG W+QVA +   +          R++ +D+ ++EP+
Sbjct: 61  IMELDDKFRFLVNGARVVDLGCAPGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA
Sbjct: 121 AGAEFHQLDFMDEGADDQVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV+++KP +SR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQKFTKVMNMKPPSSRSDSSEKFVVAMGFR 237


>gi|86750307|ref|YP_486803.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris HaA2]
 gi|123292402|sp|Q2IV68|RLME_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|86573335|gb|ABD07892.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris HaA2]
          Length = 236

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 141/203 (69%), Gaps = 1/203 (0%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+R +NDPYV +A+ +G+R+R+AYKL +I++K+  L+S + +VDLG++PG WSQV
Sbjct: 22  SSKLWLDRQLNDPYVAQAKRDGYRSRAAYKLTEIDDKYHFLKSGQAVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           AA+  GS     +++AID+L+M  I GV F + DFLD  + + +R+ +GG+  D+V+SDM
Sbjct: 82  AAKRIGSANGRGKLIAIDLLEMGEIPGVTFAQLDFLDSAAPDKLREMLGGDGADVVMSDM 141

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A  T GHRK D LR + L E+A  FA E+L  GG F+ K FQ G    ++  LK+ F  V
Sbjct: 142 AGNTTGHRKTDQLRIVGLVESAAQFASEVLKPGGIFVAKVFQSGADATLMNQLKRDFATV 201

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
            HVKP ASR +S E ++LA GFR
Sbjct: 202 KHVKPAASRKDSSERYVLAMGFR 224


>gi|149202447|ref|ZP_01879419.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
 gi|149143729|gb|EDM31763.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
          Length = 238

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 147/224 (65%), Gaps = 6/224 (2%)

Query: 9   SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
            +R LT KVK  R    SS  WL R +NDPYV+RAQ+EG+R R+A+K++++++K + L  
Sbjct: 14  GQRDLTVKVKTARGRTSSSTRWLQRQLNDPYVKRAQVEGYRGRAAFKIMELDDKFRFLVP 73

Query: 68  NRRIVDLGSSPGSWSQVAA-RITGSNANNT----RVVAIDILDMEPILGVKFFKFDFLDL 122
             R++DLG +PG W QVA  R+            R+V +D+ ++EPI+G +  + DF+  
Sbjct: 74  GARVLDLGCAPGGWCQVAVPRVNALGEKQGKAIGRIVGVDLQEVEPIMGCEIHQLDFMAD 133

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           D+ + ++  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A ++L +GG F+ K
Sbjct: 134 DADQQVKDWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLEVGGTFVSK 193

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              GG   ++  LLKK F KV +VKP ASRA+S E F++A GFR
Sbjct: 194 VLAGGAEGELQTLLKKRFDKVANVKPPASRADSSEKFVVATGFR 237


>gi|83942234|ref|ZP_00954695.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           EE-36]
 gi|83955469|ref|ZP_00964100.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           NAS-14.1]
 gi|83840113|gb|EAP79288.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           NAS-14.1]
 gi|83846327|gb|EAP84203.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           EE-36]
          Length = 262

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 146/219 (66%), Gaps = 8/219 (3%)

Query: 16  KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           KVK +S +G   SS  WL R +NDPYV+RA  EG+R R+AYK++++++K++ L    R+V
Sbjct: 34  KVKVKSARGRKLSSTRWLQRQLNDPYVKRANAEGYRGRAAYKIMELDDKYRFLVPGARVV 93

Query: 73  DLGSSPGSWSQVAAR---ITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLG++PG W QVA +   + G     N   ++ ID+ +MEPI G +  + DF++ D+ E 
Sbjct: 94  DLGAAPGGWCQVAVKRCNVLGEKKGKNVGTILGIDLQEMEPIAGCELHQLDFMEDDADEI 153

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           ++  +GG  D+V+SDMA  + GH++ DH R ++LCEAA +FA ++L  GG F+ K   GG
Sbjct: 154 VKGWLGGKADVVMSDMAASSSGHKQTDHNRIIALCEAAAYFAFDVLEDGGTFVAKVLAGG 213

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              D+  LLK+ F KV ++KP ASR++S E F++A GF+
Sbjct: 214 AEGDLQQLLKRRFTKVANIKPPASRSDSSEKFVVATGFK 252


>gi|163746305|ref|ZP_02153663.1| ribosomal RNA large subunit methyltransferase J [Oceanibulbus
           indolifex HEL-45]
 gi|161380190|gb|EDQ04601.1| ribosomal RNA large subunit methyltransferase J [Oceanibulbus
           indolifex HEL-45]
          Length = 241

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK +S +G   SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MTKTPDGKNTSGRGQRDLKVKVKSARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSNANNT--RVVAIDILDMEPI 109
           ++++++K + L    RIVDLG++PG W QVA +   + G  +      ++ +D+ +MEPI
Sbjct: 61  IMELDDKFRFLVPGARIVDLGAAPGGWCQVAVKRCNVLGERSGKQVGTILGVDLQEMEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF++ D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGCELHQLDFMEDDADLKVKEWLGGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK  F KV ++KP ASRA+S E F++A GF+
Sbjct: 181 FDVLEDGGTFVAKVLAGGAEGELQKLLKMRFTKVANIKPPASRADSSEKFVVATGFK 237


>gi|83312878|ref|YP_423142.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|123540815|sp|Q2W0P2|RLME_MAGSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|82947719|dbj|BAE52583.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 244

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 145/226 (64%), Gaps = 5/226 (2%)

Query: 4   PPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           P G S  R LT KVK  +  + SS  WL R +NDPYV  A+  G+R+R+A+K++Q++E+ 
Sbjct: 17  PAGGS--RNLTVKVKTAKRRKLSSTLWLQRQLNDPYVHEAKRLGYRSRAAFKMIQLDERF 74

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFL 120
            IL+   R+VDLG++PG W+QVA    G+       +VV +DIL+ +P+ G    + DFL
Sbjct: 75  HILKPGLRVVDLGAAPGGWTQVAVEKVGALKPKGGGKVVGMDILEWDPLPGAITLQGDFL 134

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
             D+ + +++A+GG  D+VLSDMA PT GH   DHLR + L E A  FALE+L  GG F+
Sbjct: 135 ADDAPDRLKEALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFV 194

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQGGT   +L  LKK+F  V H KP ASR  S E +++A GFR
Sbjct: 195 AKVFQGGTEKTLLDQLKKNFTTVRHAKPPASRQGSAETYVVATGFR 240


>gi|254510861|ref|ZP_05122928.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
           bacterium KLH11]
 gi|221534572|gb|EEE37560.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
           bacterium KLH11]
          Length = 238

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 148/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 1   MAKTPSGKNSSGRGQRDLKVKVKTARGRKLSSTRWLERQLNDPYVKRAQAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-----RVVAIDILDMEPI 109
           +L+++EK + L    R+VDLG +PG W QVA +   +    +      V+ +D+ ++EP+
Sbjct: 61  ILELDEKFRFLVPGARVVDLGCAPGGWLQVAVKRVNALGEKSGKRIGTVLGVDLQEVEPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G      DF++ D+ + ++  +GG  D+V+SDMA  + GH++ DHLR M+LCE A +FA
Sbjct: 121 AGATAHVLDFMEDDADQKVKDWLGGKADVVMSDMAAASSGHKQTDHLRIMALCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ FQKV +VKP ASR+ S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGDLQKLLKQKFQKVANVKPPASRSNSSEKFVVATGFR 237


>gi|85702831|ref|ZP_01033935.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
           217]
 gi|85671759|gb|EAQ26616.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
           217]
          Length = 238

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 146/224 (65%), Gaps = 6/224 (2%)

Query: 9   SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
            +R LT KVK  R    SS  WL R +NDPYV+RAQ+EG+R R+A+K++++++K + L  
Sbjct: 14  GQRDLTVKVKTARGRTSSSTRWLQRQLNDPYVKRAQIEGYRGRAAFKIMELDDKFRFLVP 73

Query: 68  NRRIVDLGSSPGSWSQVAA-RITGSNANNT----RVVAIDILDMEPILGVKFFKFDFLDL 122
             R++DLG +PG W QVA  R+            R+V +D+ ++EPI G +  + DF+  
Sbjct: 74  GARVLDLGCAPGGWCQVAVPRVNALGEKKGKAIGRIVGVDLQEVEPIAGCEIHQLDFMAD 133

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           D+ + ++  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A ++L +GG F+ K
Sbjct: 134 DADQQVKDWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLEVGGTFVSK 193

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              GG   ++  LLKK F KV +VKP ASRA+S E F++A GFR
Sbjct: 194 VLAGGAEGELQTLLKKRFDKVANVKPPASRADSSEKFVIATGFR 237


>gi|296283049|ref|ZP_06861047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Citromicrobium
           bathyomarinum JL354]
          Length = 226

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S SR    ++VK  R    SS  WL R +NDPYV+ A+  G+R+R+A+KL++++EK  IL
Sbjct: 2   SRSRGDPQKRVKTARGRTASSNRWLERQLNDPYVREAKAAGYRSRAAFKLIELDEKFGIL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   RIVDLG +PG WSQ+A +          +V ID+L  EP+ GV   + DF+  ++ 
Sbjct: 62  RGAERIVDLGIAPGGWSQIAQK----KRPQATIVGIDLLPTEPLDGVTILEMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E I   +GG PDLV+SDMA  T+GH++ DHLRTM L E A  FA++ L  GG FL K   
Sbjct: 118 ETIMGHLGGPPDLVMSDMAANTVGHKQTDHLRTMGLVETAADFAIQTLAPGGQFLAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT   +L LLKK+F+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDAQLLALLKKNFKTVKHAKPPASRKGSSEWYVVAQGFK 218


>gi|144900076|emb|CAM76940.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 238

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 144/217 (66%), Gaps = 4/217 (1%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R L ++VK  R  + SS  WL R +NDPYVQ A+  G+R+R+A+KL++++++  +L+   
Sbjct: 19  RMLVERVKTARGRKPSSTRWLQRQLNDPYVQEARKLGYRSRAAFKLIELDDRFHLLKPGL 78

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG++PG W+QVA +  G+     +VV +DIL+ +P+ G      DFL  DS + ++
Sbjct: 79  RVVDLGAAPGGWTQVAVQRVGARG---KVVGMDILEYDPVPGAICMLGDFLADDSPDRLK 135

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           +A+ G  DLV+SDMA PT GH   DHLR + L E A  FALE+L  GG F+ K FQGGT 
Sbjct: 136 EALDGLADLVVSDMAAPTTGHPPTDHLRIIGLVEVALHFALEVLAPGGTFIAKVFQGGTE 195

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +L LLKK+F  V H KP ASR ES E +++A GF+
Sbjct: 196 KSLLDLLKKNFTTVRHAKPPASRKESAETYVIATGFK 232


>gi|86138870|ref|ZP_01057442.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           MED193]
 gi|85824517|gb|EAQ44720.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           MED193]
          Length = 243

 Score =  201 bits (511), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 147/219 (67%), Gaps = 8/219 (3%)

Query: 16  KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           KVK +S +G   SS  WL R +NDPYV+RAQ EG+R R+AYK++++++K++ L    R+V
Sbjct: 24  KVKVKSARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKYRFLVPGARVV 83

Query: 73  DLGSSPGSWSQVAAR---ITGSNANNT--RVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLG +PG W+QVA +   + G        R++ +D+ ++EP+ G +F   DF+D  + + 
Sbjct: 84  DLGCAPGGWAQVAVKRINVMGEKRGKAQGRIIGVDLQEIEPLAGAEFHTLDFMDEGADDQ 143

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           +++ +GG  D+V+SDMA  + GH++ DHL+ ++LCEAA +FA ++L  GG F+ K   GG
Sbjct: 144 VKEWLGGKADVVMSDMAASSSGHKQTDHLKIIALCEAAAYFAFDVLEEGGTFVAKVLAGG 203

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              ++  LLK  F KV +VKP +SR++S E F++A G++
Sbjct: 204 AEGELQKLLKNKFTKVANVKPPSSRSDSSEKFVVAMGYK 242


>gi|84503534|ref|ZP_01001585.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           batsensis HTCC2597]
 gi|84388024|gb|EAQ01072.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           batsensis HTCC2597]
          Length = 238

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 151/234 (64%), Gaps = 10/234 (4%)

Query: 3   KPPGSSS----RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           KP G ++    +R LT KVK  R  + SS  WL R +NDPYVQRA+ EG+R R+A+K+++
Sbjct: 4   KPTGRNTSGRGQRDLTVKVKTARGRKLSSTRWLQRQLNDPYVQRAKAEGYRGRAAFKIME 63

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAA-RITG----SNANNTRVVAIDILDMEPILGV 112
           I++K + L    R+VDLG +PG W QVA  RI            R++ +D+ ++EP+ G 
Sbjct: 64  IDDKFRFLVPGARVVDLGCAPGGWLQVAVPRINALGEKQGKAQGRIIGVDLQEVEPLPGA 123

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           +  + DF+  D+ E ++  +GG  D+V+SDMA  + GH++ DHLR +SLCEAA +FA ++
Sbjct: 124 EIHQLDFMADDADEQVKTWLGGEADVVMSDMAAASSGHKQTDHLRIISLCEAAAYFAFDV 183

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ K   GG   ++  LLK+ F KV ++KP ASRA+S E F++A GFR
Sbjct: 184 LAPGGTFVAKVLAGGAEGELQKLLKQKFDKVANMKPPASRADSSEKFVVATGFR 237


>gi|217977510|ref|YP_002361657.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocella silvestris
           BL2]
 gi|217502886|gb|ACK50295.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocella silvestris
           BL2]
          Length = 237

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/227 (45%), Positives = 144/227 (63%), Gaps = 6/227 (2%)

Query: 6   GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           G    R L  +VK  R    SS  WL R +NDPYV +A+ EG+R+R+AYKL++I+++   
Sbjct: 7   GREGGRSLKTRVKTARKRTLSSTLWLQRQLNDPYVAQAKREGFRSRAAYKLIEIDDRFHF 66

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILGVKFFKFDF 119
           L+  ++I+DLG++PG WSQVAA  TG+          R++ ID+L +E + G +F   DF
Sbjct: 67  LRPGQKIIDLGAAPGGWSQVAAVRTGAAQGEGQTGRARIIGIDLLPIETLPGAEFKVMDF 126

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L+ ++   + + +GG  D+VLSDMA    GH+K DHLR + L E A  FA E L  GG F
Sbjct: 127 LEPEAPRLLTEWLGGKADVVLSDMAANATGHKKTDHLRIVGLVELAGDFACEALAPGGAF 186

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K  QGGT N +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 187 LAKVLQGGTENVLLAKLKRDFAVVRHVKPQASRADSSELYVLATGFR 233


>gi|84517387|ref|ZP_01004740.1| ribosomal RNA large subunit methyltransferase J [Loktanella
           vestfoldensis SKA53]
 gi|84508751|gb|EAQ05215.1| ribosomal RNA large subunit methyltransferase J [Loktanella
           vestfoldensis SKA53]
          Length = 243

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQK---VKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P + +  G  Q+   VK ++ +G   SS  WL R +NDPYV+RA+ +G+R R+AYK
Sbjct: 1   MAKKPTTKNTSGRGQRDLHVKVKTARGRKLSSTQWLQRQLNDPYVKRAKADGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPI 109
           +L++++K++ L    RIVDLG +PG W QVA +   +    T      V+ ID+ +++PI
Sbjct: 61  ILELDDKYRFLVPGARIVDLGCAPGGWLQVAVKRANALGERTSKAQGYVLGIDLQEVDPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G + ++ DF+  D+   +R  +GGN D+V+SDMA    GH++ DH R ++LCEAA  FA
Sbjct: 121 PGAEIYQLDFMADDADVQVRDWLGGNADVVMSDMAASASGHKQTDHNRIIALCEAAAHFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++LN GG F+ K   GG   D+  LLK  F+KV +VKP ASR++S E F++A GF+
Sbjct: 181 FDVLNEGGTFVAKVLAGGAEGDLQKLLKARFEKVANVKPPASRSDSSEKFVVATGFK 237


>gi|254486645|ref|ZP_05099850.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           GAI101]
 gi|214043514|gb|EEB84152.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           GAI101]
          Length = 251

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 149/235 (63%), Gaps = 11/235 (4%)

Query: 3   KPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           K P   +  G  Q   KVK +S +G   SS  WL R +NDPYV+RA  EG+R R+AYK++
Sbjct: 8   KTPSGKNTSGRGQRDLKVKVKSARGRKLSSTRWLQRQLNDPYVKRANAEGYRGRAAYKIM 67

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGS--NANNTRVVAIDILDMEPILG 111
           ++++K + L    RIVDLG++PG W QVA +   + G     N   ++ ID+ +MEPI G
Sbjct: 68  ELDDKFRFLVPGARIVDLGAAPGGWCQVAVKRCNVLGEKQGKNVGTILGIDLQEMEPIAG 127

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  + DF++ D+ E ++  +GG  D+V+SDMA  + GH++ DH R ++LCEAA +FA +
Sbjct: 128 CELHQLDFMEDDADEIVKGWLGGKADVVMSDMAASSSGHKQTDHNRIIALCEAAAYFAFD 187

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG   D+  LLK+ F KV ++KP ASR +S E F++A GF+
Sbjct: 188 VLEDGGTFVAKVLAGGAEGDLQKLLKRRFTKVSNIKPPASRQDSSEKFVVATGFK 242


>gi|254453503|ref|ZP_05066940.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 238]
 gi|198267909|gb|EDY92179.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 238]
          Length = 244

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 153/242 (63%), Gaps = 18/242 (7%)

Query: 1   MVKPPGS-----SSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARS 51
           MVK P S     +S RG   LT KVK  R  + SS  WL R +NDPYV RA+ +G+R R+
Sbjct: 1   MVKKPTSRIGKNTSGRGNRDLTVKVKTARGRRMSSTLWLQRQLNDPYVVRAKADGYRGRA 60

Query: 52  AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-------VVAIDIL 104
           AYK+L++NEK       +R+VDLG++PG W Q+A  +   NA   R       ++ ID+ 
Sbjct: 61  AYKILELNEKFDFFTPGKRVVDLGAAPGGWIQIA--VPKVNALGERKGKPIGTILGIDLQ 118

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           +MEPI G +    DF++ D+ + +++ +GG  D+VLSDMA    GH++ DH R M+LCEA
Sbjct: 119 EMEPIAGSELHVLDFMEDDADQKVKEWLGGKADIVLSDMAASASGHKQTDHNRIMALCEA 178

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A +FA ++L  GG F+ K   GG   D+  LLK +F+KV +VKP ASR++S E F++A G
Sbjct: 179 AAYFAFDVLEEGGVFVAKVLAGGAEADLQRLLKVNFKKVQYVKPPASRSDSSEKFVVATG 238

Query: 225 FR 226
           FR
Sbjct: 239 FR 240


>gi|149915184|ref|ZP_01903712.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. AzwK-3b]
 gi|149810905|gb|EDM70744.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. AzwK-3b]
          Length = 238

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 144/222 (64%), Gaps = 6/222 (2%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R LT KVK  R  + SS  WL R +NDPYVQRAQ EG+R R+AYK++++++K + L    
Sbjct: 16  RDLTVKVKTARGRKASSTRWLQRQLNDPYVQRAQAEGYRGRAAYKIMELDDKFRFLVPGA 75

Query: 70  RIVDLGSSPGSWSQVAA-RITG----SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           R+VDLG +PG W QVA  RI      S      ++ ID+ ++EPI G    + DF+  D+
Sbjct: 76  RVVDLGCAPGGWCQVAVPRINALGDKSGKAQGFILGIDLQEVEPIAGCVLKQLDFMADDA 135

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
              +++ +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A ++L+ GG F+ K  
Sbjct: 136 DVLVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCEAAAYLAFDVLDEGGTFVSKVL 195

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG   ++  LLK+ F KV +VKP ASRA+S E F++A GF+
Sbjct: 196 AGGAEGELQKLLKQRFTKVANVKPPASRADSSEKFVVATGFK 237


>gi|58040688|ref|YP_192652.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
           oxydans 621H]
 gi|81351345|sp|Q5FNQ1|RLME_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58003102|gb|AAW61996.1| Ribosomal RNA large subunit methyltransferase J [Gluconobacter
           oxydans 621H]
          Length = 268

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 144/223 (64%), Gaps = 8/223 (3%)

Query: 7   SSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           +++R    + V  R+ +G   + + WLNR +NDPYV  A+ +GWR+R+A+KL++I+++ +
Sbjct: 40  ATARTARNKTVSLRTARGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFK 99

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           ++    RI+DLG++PG W+QVA +    +     VV +D+L ++P+ G +  + DF D +
Sbjct: 100 LIGEGTRIIDLGAAPGGWTQVAVKRGAKH-----VVGLDLLPVDPVAGAEIIEGDFTDPE 154

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
             + ++  +GG  DLV+SDMA  T GH   DH+R M L E A  FA ++L  GG F+ K 
Sbjct: 155 MPDRLKDMLGGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKV 214

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG+  D+L L+K  F  V HVKP ASR ES E++++A GFR
Sbjct: 215 FQGGSEKDMLALMKTAFSSVKHVKPPASRKESSELYVIATGFR 257


>gi|312114414|ref|YP_004012010.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219543|gb|ADP70911.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 240

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 132/210 (62%), Gaps = 1/210 (0%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K R    S R WL R +NDPYV  A+ +G+R+R+AYKL +I EK+ +L+    +VDLG++
Sbjct: 18  KTRGRTASQRQWLERQLNDPYVAAAKRDGYRSRAAYKLEEIAEKYGLLKPGDIVVDLGAA 77

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD-LDSWEFIRQAIGGNP 136
           PG WSQVAA    +      VVA+D LD + I GV   + DF D +     +    G  P
Sbjct: 78  PGGWSQVAANRVKAADGRGAVVALDYLDFDAIPGVTILQQDFTDPVADGRLLDMLAGRRP 137

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           + VLSDMA PT GHR+ DHLR M L E A  FA+ ++  GG FL K FQGG+   +L +L
Sbjct: 138 NAVLSDMAAPTTGHRQTDHLRIMGLAEEALAFAVRVMAPGGFFLSKVFQGGSEKSLLDVL 197

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K+ F  V H+KP ASRAES E+++LA GFR
Sbjct: 198 KRDFATVRHIKPKASRAESPELYVLATGFR 227


>gi|90424572|ref|YP_532942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB18]
 gi|123275111|sp|Q212R3|RLME_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|90106586|gb|ABD88623.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB18]
          Length = 238

 Score =  197 bits (501), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/202 (47%), Positives = 134/202 (66%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R +NDPYV +A+ +G R+R+AYKL++I++K+  L+    +VDLG++PG WSQV
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGLRSRAAYKLIEIDDKYHFLKPGIAVVDLGAAPGGWSQV 81

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+  G+     +VVAID+L+M  I+GV F + DFL  ++   +   IGG  D+VLSDMA
Sbjct: 82  AAKRVGAADGRGKVVAIDLLEMPEIVGVDFAQLDFLHAEAPAKLLSMIGGKVDVVLSDMA 141

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GHRK D LR + L E A  FA ++L  GG F+ K FQ G    ++  LK+ F  V 
Sbjct: 142 ANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTFVAKVFQSGADATLVTQLKRDFVTVK 201

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
           HVKP +SR +S E ++LA GFR
Sbjct: 202 HVKPASSRKDSSERYVLAMGFR 223


>gi|163797468|ref|ZP_02191419.1| 23S rRNA methylase [alpha proteobacterium BAL199]
 gi|159177217|gb|EDP61776.1| 23S rRNA methylase [alpha proteobacterium BAL199]
          Length = 251

 Score =  197 bits (501), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 139/218 (63%), Gaps = 1/218 (0%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           SR+   +    R    SS+ WL R +NDP+V  ++  G+R+R+A+KL+Q+NE+   L+  
Sbjct: 29  SRQVFVRVKTARGRTASSQRWLERQLNDPFVAESKRLGYRSRAAFKLIQLNERFNFLRPG 88

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
            R+VDLG++PG W+Q++    G+      VV +DIL +EPI G    + DF+  D+ + I
Sbjct: 89  ARVVDLGAAPGGWTQISVDRVGAPGRGL-VVGLDILPVEPIAGATLIEADFMADDAPQQI 147

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + A GG  D+VLSDMA  T GH + DHLR + LCEAA  FALE+L   G F+ K FQGG+
Sbjct: 148 KAATGGLVDVVLSDMAAQTTGHPQTDHLRIVGLCEAAFEFALEVLAPEGTFVAKVFQGGS 207

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +L  +K+ F+ V H KP ASRAES E +++A GFR
Sbjct: 208 ETAMLARMKRAFKAVRHAKPPASRAESAETYVVATGFR 245


>gi|114771066|ref|ZP_01448506.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HTCC2255]
 gi|114548348|gb|EAU51234.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HTCC2255]
          Length = 236

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 151/235 (64%), Gaps = 9/235 (3%)

Query: 1   MVKPPGSSSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           MV+   ++S RG+   +V+ +S +G   SS  WL R +NDPYV RA  EG+R R+A+K++
Sbjct: 1   MVEKKKNTSGRGMRDLQVRVKSAKGRKLSSTLWLKRQLNDPYVARATKEGYRGRAAFKIM 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-----RVVAIDILDMEPILG 111
           ++++K + L    RIVDLG +PG W QVA +   +N +        ++ ID+ +++PI G
Sbjct: 61  ELDDKFRFLVPGARIVDLGCAPGGWCQVAVKRVNANGDKQGKKIGTILGIDLQEVDPIEG 120

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +    DF++ D+   +++ +GGN D+V+SDMA    GH++ DH+R M+LCE A +FA +
Sbjct: 121 CEIHVLDFMEDDADNKVKKWLGGNADVVMSDMAASASGHKQTDHIRIMALCETAAYFAFD 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG   ++  LLK+ F KV H+KP +SRA+S E F++A GFR
Sbjct: 181 VLEEGGTFVAKVLAGGAEGELQKLLKEKFTKVYHMKPPSSRADSSEKFVVATGFR 235


>gi|46200783|ref|ZP_00207841.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 141/217 (64%), Gaps = 3/217 (1%)

Query: 13  LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           LT KVK  +  + SS  WL R +NDPYV  A+  G+R+R+A+KL+Q++E+  IL+   R+
Sbjct: 24  LTVKVKTAKRRKLSSTLWLQRQLNDPYVHEAKRLGFRSRAAFKLIQLDERFHILKPGLRV 83

Query: 72  VDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           VDLG++PG W+QVA    G+       +VV +DIL+ +P+ G    + DFL  D+ + ++
Sbjct: 84  VDLGAAPGGWTQVAVDKVGALRPKGGGKVVGMDILEWDPLPGAITLQGDFLADDAPDRLK 143

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           +A+GG  D+VLSDMA PT GH   DHLR + L E A  FALE+L  GG F+ K FQGGT 
Sbjct: 144 EALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTE 203

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +L  LK++F  V H KP ASR  S E +++A GFR
Sbjct: 204 KTLLDQLKRNFTTVRHAKPPASRQGSAETYVVATGFR 240


>gi|254460971|ref|ZP_05074387.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2083]
 gi|206677560|gb|EDZ42047.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 244

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 149/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQK---VKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q+   VK +S +G   SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 1   MAKTPTGKNNSGRGQRDLTVKVKSARGRRMSSTLWLQRQLNDPYVKRAQAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNANNTRVVA----IDILDMEPI 109
           ++++++K++ L    R+VDLG +PG W QVA  RI        + V     IDI ++E +
Sbjct: 61  IMELDDKYRFLVPGARVVDLGCAPGGWCQVAVPRINALGDRRGKSVGTLLGIDIQEVETM 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F   DFLD  + + +++ +GG  D+V+SDMA  + GH++ DHLR M LCE A +FA
Sbjct: 121 AGAEFHVLDFLDEGADDKVKEWLGGEADVVMSDMAASSSGHKQTDHLRIMHLCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK++F KV H+KP +SR++S E F++A GF+
Sbjct: 181 FDVLAEGGTFVAKVLAGGAEGDLQKLLKQNFTKVAHMKPPSSRSDSSEKFVVATGFK 237


>gi|83951908|ref|ZP_00960640.1| ribosomal RNA large subunit methyltransferase J [Roseovarius
           nubinhibens ISM]
 gi|83836914|gb|EAP76211.1| ribosomal RNA large subunit methyltransferase J [Roseovarius
           nubinhibens ISM]
          Length = 239

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 147/224 (65%), Gaps = 6/224 (2%)

Query: 9   SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
            +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K++++++K + L +
Sbjct: 15  GQRDLTVKVKTARGRRNSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIMELDDKFRFLVN 74

Query: 68  NRRIVDLGSSPGSWSQVAA-RIT--GSNANNT--RVVAIDILDMEPILGVKFFKFDFLDL 122
             R+VDLG +PG W+QVA  RI   G        R + +D+ ++EP+ G +F   DF++ 
Sbjct: 75  GARVVDLGCAPGGWAQVAVPRINALGEKPGKAVGRFIGVDLQEVEPLAGAEFHVLDFMED 134

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + + +++ +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A ++L  GG F+ K
Sbjct: 135 GADDKVKEWLGGRADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLEEGGTFVSK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              GG   D+  LLK+ F KV +VKP ASR +S E F++A GFR
Sbjct: 195 VLAGGAEGDLQKLLKQRFTKVANVKPPASRPDSSEKFVIATGFR 238


>gi|254438214|ref|ZP_05051708.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 307]
 gi|198253660|gb|EDY77974.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 307]
          Length = 244

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 146/225 (64%), Gaps = 10/225 (4%)

Query: 10  RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           +R LT KVK+ R  + SS  WL R +NDPYV RA+ +G+R R+AYK+L++N+K       
Sbjct: 18  QRDLTVKVKSARGRKMSSTLWLQRQLNDPYVVRAKADGYRGRAAYKILELNDKFDFFTPG 77

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLD 121
           +R+VDLG++PG W Q+A  +   NA   R       ++ ID+ +MEPI G +    DF++
Sbjct: 78  KRVVDLGAAPGGWIQIA--VPKVNALGERKGKPIGTILGIDLQEMEPIAGSELHVLDFME 135

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+ + ++  +GG  D+VLSDMA    GH++ DH R M+LCEAA +FA ++L  GG F+ 
Sbjct: 136 DDADQKVKDWLGGKADIVLSDMAASASGHKQTDHNRIMALCEAAAYFAFDVLEEGGVFVA 195

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K   GG   D+  LLK +F+KV +VKP ASR++S E F++A GFR
Sbjct: 196 KVLAGGAEADLQRLLKINFKKVQYVKPPASRSDSSEKFVVATGFR 240


>gi|83591585|ref|YP_425337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
           ATCC 11170]
 gi|123527542|sp|Q2RXU5|RLME_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83574499|gb|ABC21050.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
           ATCC 11170]
          Length = 263

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 141/214 (65%), Gaps = 4/214 (1%)

Query: 17  VKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           V+ R+ +G   SS  WL R +NDPYV  A+ +G R+R+A+KL++++E+  +L+   R+VD
Sbjct: 37  VRVRTAKGRKASSTRWLQRQLNDPYVLEAKRQGLRSRAAFKLIELDERFTLLKPGMRVVD 96

Query: 74  LGSSPGSWSQVAARITGS-NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           LG++PG W+Q+A   T S + N  +VV +DIL+ E + G      DF+D  +   ++ A+
Sbjct: 97  LGAAPGGWTQIAVERTRSLHPNGGKVVGMDILEWEGVAGATCLTHDFMDDAAPLMLKGAM 156

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
            G  DLVLSDMA PT GHR+ DHLR M L EAA +FA E+L  GG F+ K FQGGT   +
Sbjct: 157 DGAVDLVLSDMAAPTTGHRQTDHLRVMGLAEAAWYFAEEVLAPGGAFVCKVFQGGTEGAL 216

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  +KK  + + H KP ASR  S E++++A+GFR
Sbjct: 217 LTRMKKMCEVIRHAKPPASRQGSPEVYVIAQGFR 250


>gi|119386697|ref|YP_917752.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paracoccus denitrificans
           PD1222]
 gi|143460965|sp|A1B962|RLME_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119377292|gb|ABL72056.1| 23S rRNA Um-2552 2'-O-methyltransferase [Paracoccus denitrificans
           PD1222]
          Length = 256

 Score =  195 bits (495), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 12/236 (5%)

Query: 3   KPPGS---SSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKL 55
           K PGS   SS RG    +V+ +S +G   SS  WL R +NDPYV RA+ EG+R R+AYK+
Sbjct: 5   KKPGSGRKSSGRGQRDLRVRVKSAKGRKLSSTLWLERQLNDPYVARAKREGYRGRAAYKI 64

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVA-ARITG----SNANNTRVVAIDILDMEPIL 110
           L++++K++ L    R+VDLG +PG W QVA AR+      S     RV+ +D+ +++PI 
Sbjct: 65  LELDDKYRFLVPGARVVDLGCAPGGWCQVAVARVNALGDKSGKKVGRVLGVDLQEVDPIP 124

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           G +  + DFL   + E ++  +GG  D+V+SDMA  + GH+  DHLR ++L EAA   A 
Sbjct: 125 GAEIHQLDFLSEGADEQVKAWLGGRADVVMSDMAAASSGHKGTDHLRIVALVEAAAQLAF 184

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++L  GG F+ K   GG  N++  +LK++F+KV +VKP ASR++S E F++A+GFR
Sbjct: 185 DVLEPGGTFVAKVLAGGAENEMQAMLKRNFRKVANVKPPASRSDSSEKFVVAQGFR 240


>gi|189040697|sp|B0T8J6|RLME_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 226

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 143/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 1   MVKPPAGGNDGGRAKPARLKTAFGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K++  +   +++DLG +PG W Q+A     +    T +V +D+L ++P+      + 
Sbjct: 61  IDDKYRFFKKGAKVIDLGCAPGGWLQMA-----TERGVTDIVGVDLLPVDPVAPAHILEM 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D      + + +GG PDLV+SDMA  T+GHR+ DHLR + L E    FA+E+L  GG
Sbjct: 116 DFTDPACPPKMLELLGGAPDLVMSDMAPNTVGHRETDHLRIVGLIEIGADFAIEVLKPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T  ++  LKKHF KV+H KP ASR++S E+FL+A GF+
Sbjct: 176 AFVAKAFQGGETAAVIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFK 224


>gi|167646174|ref|YP_001683837.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter sp. K31]
 gi|167348604|gb|ABZ71339.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter sp. K31]
          Length = 235

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 143/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 10  MVKPPAGGNDGGRAKPARLKTAFGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 69

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K++  +   +++DLG +PG W Q+A     +    T +V +D+L ++P+      + 
Sbjct: 70  IDDKYRFFKKGAKVIDLGCAPGGWLQMA-----TERGVTDIVGVDLLPVDPVAPAHILEM 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D      + + +GG PDLV+SDMA  T+GHR+ DHLR + L E    FA+E+L  GG
Sbjct: 125 DFTDPACPPKMLELLGGAPDLVMSDMAPNTVGHRETDHLRIVGLIEIGADFAIEVLKPGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T  ++  LKKHF KV+H KP ASR++S E+FL+A GF+
Sbjct: 185 AFVAKAFQGGETAAVIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFK 233


>gi|315499641|ref|YP_004088444.1| ribosomal RNA methyltransferase rrmj/ftsj [Asticcacaulis
           excentricus CB 48]
 gi|315417653|gb|ADU14293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Asticcacaulis
           excentricus CB 48]
          Length = 238

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 143/230 (62%), Gaps = 9/230 (3%)

Query: 1   MVKPPG----SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           MVKPP     S   +G T     +    SS  WL R +NDP+VQ+A+ EGWR+R+A+KL 
Sbjct: 13  MVKPPAGGNLSGRAKGHTAVKTAKQRTQSSAKWLERQLNDPFVQKAKAEGWRSRAAFKLQ 72

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I+++  IL+   R+VDLG +PG W Q+A      +     VV +D+L ++PI G    +
Sbjct: 73  EIDDRFHILKRGARVVDLGCAPGGWVQMA-----QSRGAAHVVGVDLLPVDPIPGADMIE 127

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF D      + + +G  PD+VLSD+A+ T+GHR+ DHL+ M L E A+ FAL+ L  G
Sbjct: 128 ADFTDPAIPARLMEMMGDKPDVVLSDLAHNTVGHRQTDHLKIMGLLELASDFALDNLKPG 187

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K FQGG T  +L  LK  F+ V H KP +SRA+S E++++A+GF+
Sbjct: 188 GAFVAKAFQGGETEHLLLKLKLAFRDVKHFKPKSSRADSSEIYIVAQGFK 237


>gi|110772930|ref|XP_001123010.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like,
           partial [Apis mellifera]
          Length = 225

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 141/218 (64%), Gaps = 10/218 (4%)

Query: 12  GLT---QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           GLT   +K K RS   S + WL R +NDPYV+ AQ  GWR+R+AYKL+++N+K   L+  
Sbjct: 7   GLTVTLKKTKGRST--SQQRWLTRQLNDPYVKAAQQHGWRSRAAYKLIELNDKFHFLKKG 64

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
            ++VDLG++PG WSQVA     S     +VV ID+L +EP++G   F+ DF +  + E +
Sbjct: 65  IKVVDLGAAPGGWSQVAVYHKAS-----KVVGIDLLQVEPVMGADIFQGDFTEPHNLEVL 119

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
              + G  DLV+SDMA  T GH   DH+R ++L E A  FA+++LN+ G F+ K FQGG+
Sbjct: 120 LDKLEGKADLVMSDMAPNTTGHAATDHIRIVNLTEQALDFAIKILNLNGVFIAKVFQGGS 179

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +L  LK+ F+ V H KP ASR ES E++++A GF+
Sbjct: 180 EKLMLNNLKRSFKIVKHAKPPASRKESRELYVIATGFK 217


>gi|296534248|ref|ZP_06896731.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
           cervicalis ATCC 49957]
 gi|296265422|gb|EFH11564.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
           cervicalis ATCC 49957]
          Length = 228

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 147/223 (65%), Gaps = 8/223 (3%)

Query: 7   SSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           + + RGLT ++  R+ +G   +S+ WL R +NDPYV+ A+  GWR+R+A+KL++++EK++
Sbjct: 5   TEAGRGLTTRL--RTAKGRTTASQRWLERQLNDPYVRAAKAAGWRSRAAFKLIELDEKYK 62

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L+  +RIVDLG++PG W+QVA +  G   +  +VV +D+L M+ I G    + DF D  
Sbjct: 63  LLKPGQRIVDLGAAPGGWTQVAVQRAG---DRGKVVGLDLLPMDVIAGATLLQGDFQDEA 119

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
             + +  A+ G  DLV+SDMA  T GH   DHLR + L E A  FA ++L  GG F+ K 
Sbjct: 120 VEQAVLDALDGPADLVMSDMAPNTTGHNATDHLRILGLVELALDFADKVLVPGGAFIAKV 179

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGGT  ++L  LK+ +  V H KP ASR +S EM+++A+G+R
Sbjct: 180 FQGGTEREMLNRLKRDYATVRHAKPPASRKDSAEMYVVAQGYR 222


>gi|159044221|ref|YP_001533015.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157911981|gb|ABV93414.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 257

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 147/234 (62%), Gaps = 8/234 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           M K  G+S R     +V+ ++ +G   SS  WL R +NDPYVQ+A+ EG+R R+A+K+L+
Sbjct: 15  MPKKAGNSGRGQRDLRVRVKTARGRKLSSTLWLERQLNDPYVQKAKREGYRGRAAFKILE 74

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGV 112
           I+E+ + L    R+VDLG +PG W QVA R        S     RV+ +D+ +++P+ G 
Sbjct: 75  IDERFRFLVPGARVVDLGCAPGGWCQVAVRRVNALGEKSGKAQGRVLGVDLKEIDPVPGA 134

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           +    DF++  +   ++  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA   A ++
Sbjct: 135 ETHVLDFMEDGADAQVKAWLGGKADVVMSDMAAASSGHKQTDHLRIVALCEAAAHLAFDV 194

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ K   GG   ++  LLK+ F KVI+VKP ASR++S E F++A GFR
Sbjct: 195 LEEGGTFVAKVLAGGAERELQTLLKRAFTKVINVKPDASRSDSSEKFVVATGFR 248


>gi|114762829|ref|ZP_01442261.1| ribosomal RNA large subunit methyltransferase J [Pelagibaca
           bermudensis HTCC2601]
 gi|114544439|gb|EAU47446.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
           HTCC2601]
          Length = 238

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK +S +G   SS  WL R +NDPYV+RA+ EG+R R+A+K
Sbjct: 1   MAKKPTGKNTSGRGQRDLKVKVKSARGRTTSSTRWLQRQLNDPYVKRAKDEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNANNTR----VVAIDILDMEPI 109
           +L+++EK++ L    R+VDLG +PG W QVA  R+      + +    V+ +D+ ++ PI
Sbjct: 61  ILELDEKYRFLVPGARVVDLGCAPGGWCQVAVPRVNALGERSGKAQGFVLGVDLQEVLPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF++  + + ++  +GG  D+V+SDMA  + GH++ DHLR +SLCEAA   A
Sbjct: 121 PGAEIHQLDFMEEGADDKVKAWLGGKADVVMSDMAASSSGHKQTDHLRIISLCEAAAELA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG    +  LLKK F KV +VKP ASR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEQGLQALLKKRFDKVANVKPPASRSDSSEKFVVATGFR 237


>gi|329850827|ref|ZP_08265672.1| ftsJ-like methyltransferase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328841142|gb|EGF90713.1| ftsJ-like methyltransferase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 226

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 149/232 (64%), Gaps = 13/232 (5%)

Query: 1   MVKPP--GSSSRRG----LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           MVKPP  G+ + RG      +  K R+   SS  WL R +NDPYVQ+A+ EGWR+R+A+K
Sbjct: 1   MVKPPEGGTLAGRGKGHTAVKTAKYRTQ--SSAKWLERQLNDPYVQQAKAEGWRSRAAFK 58

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           L++I+E+  +L+   R++DLG +PG W QVA +   ++     VV +D+L ++P+ G   
Sbjct: 59  LIEIDERFHLLKRGSRVIDLGCAPGGWVQVAKKRGAAH-----VVGVDLLPVDPVPGADI 113

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            + DF D      + + +GG PD+VLSD+A+ T+GH++ DHL+ M L E A  FALE L 
Sbjct: 114 LEADFTDPAIGPQLIELMGGKPDIVLSDLAHNTVGHKQTDHLKIMGLLEMAGDFALENLK 173

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K FQGG T ++L  LK  F  V H+KP +SRA S E++++A GFR
Sbjct: 174 PGGAFVAKAFQGGETEELLLKLKLAFDVVKHMKPKSSRAGSTEIYIVATGFR 225


>gi|295689972|ref|YP_003593665.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter segnis ATCC
           21756]
 gi|295431875|gb|ADG11047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter segnis ATCC
           21756]
          Length = 235

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   S  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 10  MVKPPTGGSEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 69

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+EK    +   R++DLG +PG W Q+A          T +  ID+L ++P+      + 
Sbjct: 70  IDEKFHFFRKGARVIDLGCAPGGWLQIAV-----ERGVTDLAGIDLLPVDPVAPAHILEM 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF    + E + + +GG PDLV+SDMA  T+GHR+ DHLR + L E A  FA+++L  GG
Sbjct: 125 DFTADGAPEKLMEILGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAVDVLKPGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T +++  LK+HF KV H KP ASR +S E+FL+A GF+
Sbjct: 185 AFVAKAFQGGETAEVIGKLKRHFTKVQHFKPKASRQDSSEVFLVATGFK 233


>gi|254294177|ref|YP_003060200.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
           49814]
 gi|254042708|gb|ACT59503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
           49814]
          Length = 251

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 135/203 (66%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SSR W+ R +NDPYV+RA   GWRAR+AYKLL+++EK  +L++ +R+VDLG +PGSW+QV
Sbjct: 49  SSRAWIERQLNDPYVRRAHEAGWRARAAYKLLELDEKFGLLKNTQRVVDLGCAPGSWTQV 108

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             +  G++     VV ID+L ++PI G    + D  D ++   +   + G P LVLSDMA
Sbjct: 109 LMQKYGAH----YVVGIDLLPVDPIAGAHLIEGDVNDPEAMAEMMSVLQGKPTLVLSDMA 164

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GH++ DH+RT+ L E A  FA++ L +GG+F  K FQGG   ++  L+  +F +V 
Sbjct: 165 AATTGHKQTDHVRTVQLAEMAVQFAIDNLEVGGNFCTKVFQGGAQGELKALMDANFAEVK 224

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
           + KP +SRA S EMF +A GF++
Sbjct: 225 YWKPPSSRAGSPEMFAVALGFKQ 247


>gi|126729852|ref|ZP_01745665.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
           E-37]
 gi|126709971|gb|EBA09024.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
           E-37]
          Length = 236

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 9/235 (3%)

Query: 1   MVKPPGSSSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K P +SS RG    KVK ++ +G   SS  WL R +NDPYV+RA+ EG+R R+A+K+L
Sbjct: 1   MAKGPKNSSGRGQRDLKVKVKTARGRKLSSTLWLQRQLNDPYVKRAKEEGYRGRAAFKIL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILG 111
           +I+EK++ L    R+VDLG +PG W QVAAR   S           V+ ID+ +++ I G
Sbjct: 61  EIDEKYRFLVPGARVVDLGCAPGGWCQVAARRVNSLGEKPGKAQGFVLGIDLQEVDAIAG 120

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
           V+  + DFL+  + + ++  +GG+  +V+SDMA  + GH++ DHLR ++LCEAA   A +
Sbjct: 121 VELHQLDFLEDGADDKVKGWLGGSAHVVMSDMAAASSGHKQTDHLRIITLCEAAAELAFD 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG    +   LK+ F KV + KP ASR++S E F++A GFR
Sbjct: 181 VLEEGGTFVAKVLAGGAEGTLQATLKRRFAKVANFKPPASRSDSSEKFVVATGFR 235


>gi|260427088|ref|ZP_05781067.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
           SE45]
 gi|260421580|gb|EEX14831.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
           SE45]
          Length = 238

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 150/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RA+ EG+R R+A+K
Sbjct: 1   MAKKPTGKNTSGRGQRDLKVKVKTARGRTLSSTRWLQRQLNDPYVKRAKDEGFRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RIT--GSNANNTR--VVAIDILDMEPI 109
           +L+++E+   L+   R+VDLG +PG W QVA  R+   G   N  +  V+ +D+ ++ P+
Sbjct: 61  ILELDERFGFLKPGARVVDLGCAPGGWCQVAVPRVNSLGEKKNKPQGFVLGVDLQEVLPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G   ++ DFL++ + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCEAA   A
Sbjct: 121 PGADIYQLDFLEMGADDKVKEWLGGRADVVMSDMAASSSGHKQTDHLRIISLCEAAAELA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG    +  LLK+ F KV +VKP +SRA+S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEQGLQSLLKQRFDKVYNVKPPSSRADSSEKFVVATGFR 237


>gi|294086049|ref|YP_003552809.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665624|gb|ADE40725.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 268

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 142/225 (63%), Gaps = 3/225 (1%)

Query: 4   PPGSSSRR--GLT-QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           P G S R   GLT Q  K R  + SS+ WL R +NDPYV  A+  G+R+R+A KL QI++
Sbjct: 15  PSGRSYRNATGLTRQPKKMRGRKVSSQRWLTRQLNDPYVAEAKSRGYRSRAAIKLEQIDD 74

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++Q+L+    I+DLG +PG W QVA+  T    +  ++V +D+LD E I+    F  D  
Sbjct: 75  RYQLLKPGMAIIDLGCAPGGWLQVASIRTKLGISKAKLVGVDLLDTEHIVDADIFVGDMT 134

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D      +++A+GG  D V+SDMA  T GHR  DHLRT +L E A  FAL++L   G FL
Sbjct: 135 DDAMMTQMQEAVGGAADGVMSDMAADTTGHRATDHLRTTALLETALDFALDVLRKDGFFL 194

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            K F+GG    +L L++++F+ V HVKP ASR+ESVE ++LA GF
Sbjct: 195 AKCFRGGAERSVLDLMRQNFKTVRHVKPTASRSESVESYVLATGF 239


>gi|148261003|ref|YP_001235130.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidiphilium cryptum
           JF-5]
 gi|326404403|ref|YP_004284485.1| ribosomal RNA large subunit methyltransferase J [Acidiphilium
           multivorum AIU301]
 gi|189044083|sp|A5G029|RLME_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146402684|gb|ABQ31211.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidiphilium cryptum JF-5]
 gi|325051265|dbj|BAJ81603.1| ribosomal RNA large subunit methyltransferase J [Acidiphilium
           multivorum AIU301]
          Length = 225

 Score =  191 bits (485), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 5/219 (2%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           S RR   +    R  + SS+ WL R +NDPYV  A+  G+R+R+A+KL++++EK  ++  
Sbjct: 8   SRRRAAVRLKAARKHKPSSQKWLLRQLNDPYVAAAKERGFRSRAAFKLIELDEKFGLIGK 67

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
             R+VDLG++PG W+QVA          +RVV ID+LD++PI G    K DF D      
Sbjct: 68  GARVVDLGAAPGGWTQVAL-----ERGASRVVGIDLLDIDPIAGATLIKGDFQDESMETA 122

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           + + +GG  D+V+SDMA  T GH   DHLR M L E A  FA + L  GG F+ K FQGG
Sbjct: 123 LAEILGGPADVVMSDMAPNTTGHTATDHLRIMGLAELALDFAFKHLAPGGAFVTKLFQGG 182

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              D+L LLK+ F +V H KP ASR +S E++L+A G+R
Sbjct: 183 AQGDMLNLLKRRFAQVRHAKPEASRKDSRELYLVATGYR 221


>gi|254420188|ref|ZP_05033912.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas sp.
           BAL3]
 gi|196186365|gb|EDX81341.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas sp.
           BAL3]
          Length = 224

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 145/225 (64%), Gaps = 8/225 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP  G+++ RG+  K+K    +  SS+ W+ R + D + ++A+ EGWR+R+A+KL++
Sbjct: 1   MVKPPTGGTAAGRGMGTKMKTADTKSMSSQQWIKRQLADKWSEKARAEGWRSRAAFKLIE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K  +++   +++DLG++PG W QVA      N     V  +D+L +EPI G    + 
Sbjct: 61  IDDKFHLIKRGSKVIDLGAAPGGWIQVAV-----NRGAGAVAGVDLLMIEPIPGSTLLQA 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF      + +  AIGG PDLVLSDMA+ T+GHR+ DHL+ ++L E A  FA+  L  GG
Sbjct: 116 DFTHPGVDQQLIDAIGGAPDLVLSDMAHNTVGHRQTDHLKIIALIEIAADFAIRTLRPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +F+ K FQGG    +L  L++ F+ V +VKP +SR +S E+FL+A
Sbjct: 176 NFVSKNFQGGDAGGVLARLREEFETVKYVKPASSRKDSAEVFLVA 220


>gi|148557611|ref|YP_001265193.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas wittichii
           RW1]
 gi|189040343|sp|A5VFI9|RLME_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|148502801|gb|ABQ71055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas wittichii
           RW1]
          Length = 229

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/221 (41%), Positives = 142/221 (64%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S +  G  Q++K  +    SS  W+ R +NDPYV++AQ EG+R+R+AYKL++++E+   L
Sbjct: 2   SRAGNGGRQRIKTAKGRSASSIKWIQRQLNDPYVRKAQAEGYRSRAAYKLIELDERFHFL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R++DLG +PG W+QV  R+    A    +V ID+L  +PI G    + DF+  ++ 
Sbjct: 62  RGAKRVIDLGIAPGGWTQVVRRVCPQAA----IVGIDLLPTDPIDGAIILQMDFMSDEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + +A+GG  D+VLSDMA  T+GH++ DHLRTM+L EA   FA E+L  GG ++ K   
Sbjct: 118 AQLAEALGGPADIVLSDMAANTVGHQQTDHLRTMALVEAGCLFASEVLRPGGTYVAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG  + ++  LK+ F  V H KP ASR +S E +++A+GF+
Sbjct: 178 GGADHGLVAELKRLFTTVKHAKPPASRKDSSEWYVIAQGFK 218


>gi|260575119|ref|ZP_05843120.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sp. SW2]
 gi|259022741|gb|EEW26036.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sp. SW2]
          Length = 246

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 144/229 (62%), Gaps = 8/229 (3%)

Query: 6   GSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           G+S R     +V+ +S +G   SS  WL R +NDPYV RA+ EG+R R+A+K+L++++K+
Sbjct: 9   GTSGRGQRELRVRVKSAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAFKILELDDKY 68

Query: 63  QILQSNRRIVDLGSSPGSWSQVA-ARITG----SNANNTRVVAIDILDMEPILGVKFFKF 117
             L+   R+VDLG +PG W QVA  R+       N     V+ +D+ ++EPI G +  + 
Sbjct: 69  GFLKPGARVVDLGCAPGGWCQVAVGRVNALAERKNKPVGTVLGVDLQEVEPIAGAQIHQL 128

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DFL  D+   ++  +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  GG
Sbjct: 129 DFLADDADALVKGWLGGPADVVMSDMAAAASGHKGTDHLRIIALCEAAAQFAFDVLEEGG 188

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K   GG    +  +LK++F KV +VKP ASRA+S E F++A G+R
Sbjct: 189 TFVAKVLAGGAEIGLQTMLKQNFDKVANVKPPASRADSSEKFVVAMGYR 237


>gi|302382743|ref|YP_003818566.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193371|gb|ADL00943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 224

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 143/225 (63%), Gaps = 8/225 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP  G+++ RG+  K+K    +  SS +W+ R + DP+ ++A+ EGWR+R+A+K  +
Sbjct: 1   MVKPPTGGTAAGRGMGGKIKTAEKKSISSIEWIKRQLADPWSEKARAEGWRSRAAFKFSE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+++  +++   R++DLG++PG W QV       N     VV +D+L +EPI G    + 
Sbjct: 61  IDDRFHLVKRGSRVIDLGAAPGGWVQVCV-----NRGAASVVGVDLLPIEPIPGSTLIQA 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D    + +   +GG PDLVLSDMA+ T+GHR+ DHL+ ++L E A+ FA+  L  GG
Sbjct: 116 DFTDPGVDQQLIDLLGGPPDLVLSDMAHNTVGHRQTDHLKIIALIEVASDFAIRTLRPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
            F+ K FQGG    +L  L+  FQ+V +VKP ASR  S E++L+A
Sbjct: 176 HFVTKNFQGGDAGRVLAELRAAFQEVKYVKPAASRKGSSEVYLVA 220


>gi|16125862|ref|NP_420426.1| cell division protein FtsJ [Caulobacter crescentus CB15]
 gi|81535426|sp|Q9A7V4|RLME_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|13423014|gb|AAK23594.1| cell division protein FtsJ [Caulobacter crescentus CB15]
          Length = 226

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 139/229 (60%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 1   MVKPPAGGNEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K        +++DLG +PG W Q+A          T +  ID+L ++P+      + 
Sbjct: 61  IDDKFHFFSKGAKVIDLGCAPGGWLQIAV-----ERGVTTLAGIDLLPVDPVAPAHLLEM 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF    + E + + +GG PDLV+SDMA  T+GHR+ DHLR + L E A  FA+++L  GG
Sbjct: 116 DFTADGAPEKLLELLGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAIDVLKPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T +I+  LK+HF KV H KP ASR +S E+FL+A GF+
Sbjct: 176 AFVAKAFQGGETAEIIGKLKRHFDKVQHFKPKASRQDSSEVFLVATGFK 224


>gi|221234624|ref|YP_002517060.1| 23S rRNA Um2552 2'-O-methyltransferase [Caulobacter crescentus
           NA1000]
 gi|220963796|gb|ACL95152.1| 23S rRNA Um2552 2'-O-methyltransferase [Caulobacter crescentus
           NA1000]
          Length = 236

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 139/229 (60%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 11  MVKPPAGGNEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 70

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K        +++DLG +PG W Q+A          T +  ID+L ++P+      + 
Sbjct: 71  IDDKFHFFSKGAKVIDLGCAPGGWLQIAV-----ERGVTTLAGIDLLPVDPVAPAHLLEM 125

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF    + E + + +GG PDLV+SDMA  T+GHR+ DHLR + L E A  FA+++L  GG
Sbjct: 126 DFTADGAPEKLLELLGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAIDVLKPGG 185

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T +I+  LK+HF KV H KP ASR +S E+FL+A GF+
Sbjct: 186 AFVAKAFQGGETAEIIGKLKRHFDKVQHFKPKASRQDSSEVFLVATGFK 234


>gi|310816173|ref|YP_003964137.1| ribosomal RNA large subunit methyltransferase J [Ketogulonicigenium
           vulgare Y25]
 gi|308754908|gb|ADO42837.1| ribosomal RNA large subunit methyltransferase J [Ketogulonicigenium
           vulgare Y25]
          Length = 249

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 150/238 (63%), Gaps = 12/238 (5%)

Query: 1   MVKPP---GSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAY 53
           M KPP   G +S RG   LT KVK  +  + SS  WL R +NDPYV RA+ EG+R R+AY
Sbjct: 1   MTKPPSKTGGTSGRGQRDLTVKVKTAKGRKLSSTKWLERQLNDPYVVRARAEGYRGRAAY 60

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RIT--GSNANNT--RVVAIDILDMEP 108
           K++++++K   L+   R+VDLG +PG W QVA  RI   G  A     R++ +D+  ++P
Sbjct: 61  KIMELDDKFGFLKPGARVVDLGCAPGGWLQVAVPRINALGERAGKPVGRILGLDLQVVDP 120

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
           + G +    DFL  D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA + 
Sbjct: 121 VPGAEVHVLDFLADDADLQVKEWLGGQADVVMSDMAASASGHKQTDHLRIIALCEAAAYL 180

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           A ++L  GG F+ K   GG   ++  +LK+ F KV +VKP +SR++S E F++A G+R
Sbjct: 181 AFDVLTPGGTFVCKVLAGGAEGELQKILKQKFTKVENVKPPSSRSDSSEKFVVATGYR 238


>gi|296116233|ref|ZP_06834851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977339|gb|EFG84099.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 213

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K R    +   WL R +NDPYVQ AQ +GWR+R+A+KL++++++  +++   R+VDLG++
Sbjct: 5   KARGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFHLIRPGMRVVDLGAA 64

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG W+QVA +   S+     V+ +D+L ++P+ G    + DF D D  E +R+ + G PD
Sbjct: 65  PGGWAQVAVKRGASH-----VIGVDLLPVDPVPGATIIEGDFNDPDMPERLRELLDGAPD 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LV+SDMA  T GH   DHLR + L E A  FA ++L  GG F+ K FQGG    +L  LK
Sbjct: 120 LVMSDMAPNTTGHAPTDHLRIIGLAELALDFATQILAPGGSFIAKVFQGGAEKQMLQALK 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F +V H KP ASR ES E++++A  FR
Sbjct: 180 HSFGQVRHAKPPASRKESSELYVIATDFR 208


>gi|126462182|ref|YP_001043296.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558204|ref|ZP_08412526.1| ribosomal RNA large subunit methyltransferase E [Rhodobacter
           sphaeroides WS8N]
 gi|158513438|sp|A3PJK8|RLME_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|126103846|gb|ABN76524.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332275916|gb|EGJ21231.1| ribosomal RNA large subunit methyltransferase E [Rhodobacter
           sphaeroides WS8N]
          Length = 244

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 147/229 (64%), Gaps = 9/229 (3%)

Query: 7   SSSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           ++S RG  + +V+ ++ +G   SS  WL R +NDPYV RA+ EG+R R+AYK+L++++K 
Sbjct: 5   NTSGRGQRELRVRVKTAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKF 64

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILGVKFFKF 117
             L+   R+VDLG +PG W QVA     +     N     V+ +D+ ++EPI G +  + 
Sbjct: 65  GFLKPGGRVVDLGCAPGGWCQVAVERVNALGQRKNKPEGTVLGVDLQEVEPISGAEIHQL 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DFL  D+ E ++  +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  GG
Sbjct: 125 DFLSDDADEKVKGWLGGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K   GG  N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 185 TFVAKVLAGGAENELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 233


>gi|77463326|ref|YP_352830.1| 23S rRNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|123592015|sp|Q3J2Q5|RLME_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77387744|gb|ABA78929.1| 23S rRNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 244

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 147/229 (64%), Gaps = 9/229 (3%)

Query: 7   SSSRRGLTQ-KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           ++S RG  + +V+ ++ +G   SS  WL R +NDPYV RA+ EG+R R+AYK+L++++K 
Sbjct: 5   NTSGRGQRELRVRVKTAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKF 64

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILGVKFFKF 117
             L+   R+VDLG +PG W QVA     +     N     V+ +D+ ++EPI G +  + 
Sbjct: 65  GFLKPGGRVVDLGCAPGGWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEIHQL 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DFL  D+ E ++  +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  GG
Sbjct: 125 DFLSDDADEKVKGWLGGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K   GG  N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 185 TFVAKVLAGGAENELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 233


>gi|288941981|ref|YP_003444221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
           DSM 180]
 gi|288897353|gb|ADC63189.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
           DSM 180]
          Length = 206

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 131/203 (64%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SSR WL+RH NDPYV+R Q++G+R+R+AYKLL+I EK  IL+   R+VDLG++PGSWSQ+
Sbjct: 6   SSRRWLDRHFNDPYVKRVQVDGYRSRAAYKLLEIQEKDPILKPGMRVVDLGAAPGSWSQI 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A ++ G       VVA+DIL MEP+ GV   + DF D +    +R+AIG  P D+VLSDM
Sbjct: 66  ARQLVGPEGC---VVALDILPMEPLPGVVVLQGDFRDDEVLSRLREAIGEAPLDVVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A   A   L  GG  + K FQG   +D +  L+  F++V
Sbjct: 123 APNITGTMVVDQTRAMYLVELALELARSHLKPGGTLVTKVFQGTGFDDYMRELRSSFRQV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR ES E+FL+AKGFR
Sbjct: 183 ATRKPKSSRTESREVFLVAKGFR 205


>gi|162147649|ref|YP_001602110.1| ribosomal RNA large subunit methyltransferase J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542278|ref|YP_002274507.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786226|emb|CAP55808.1| putative ribosomal RNA large subunit methyltransferase J
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529955|gb|ACI49892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 264

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 136/215 (63%), Gaps = 8/215 (3%)

Query: 15  QKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           Q V  R+ +G   + + WLNR +NDPYVQ A+ +GWR+R+A+KL++++++  +++   R+
Sbjct: 43  QAVSLRTARGRTTAQQRWLNRQLNDPYVQAARKQGWRSRAAFKLIELDDRFHLIRPGMRV 102

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           +DLG++PG W+QVA +          VV +D+L ++P+ G    + DF D D    +   
Sbjct: 103 IDLGAAPGGWTQVAVK-----RGAAYVVGVDLLPVDPVAGATIIEGDFNDPDMPARLIDL 157

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +GG  DLVLSDMA  T GH   DHLR + L E A  FA+++L  GG F+ K FQGG+   
Sbjct: 158 LGGPADLVLSDMAPNTTGHAPTDHLRIIGLAELALDFAVKVLAPGGGFVAKVFQGGSEKQ 217

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  +K+ F  V H KP ASR ES E++++A GFR
Sbjct: 218 MLAPMKQAFATVRHAKPPASRKESSELYVVATGFR 252


>gi|197104878|ref|YP_002130255.1| cell division protein FtsJ [Phenylobacterium zucineum HLK1]
 gi|196478298|gb|ACG77826.1| cell division protein FtsJ [Phenylobacterium zucineum HLK1]
          Length = 239

 Score =  187 bits (475), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 143/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP  G    RG   ++K  +    S + WL R +NDP+  +A+  G+R+R+A+K+ +
Sbjct: 9   MVKPPTGGQEGGRGKPARLKTAKQRTPSQQAWLERQVNDPFAAKARALGYRSRAAFKISE 68

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+++  + +   R+VDLG +PG W+QVA +        T +V +D+L +EP+      + 
Sbjct: 69  IDDRFHLFRKGVRVVDLGLAPGGWTQVAIQ-----RGVTDIVGVDLLPVEPLPPAHILQM 123

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D      + + +GG PD+V+SDMA  TIGHR+ DHLR + L EAA  FA+E+L  GG
Sbjct: 124 DFTDPACGPKLIELLGGPPDVVISDMAPNTIGHRETDHLRIVGLIEAAIDFAVEVLKPGG 183

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T+ I+  LK  F+ V ++KP ASR +S E+FL+A GF+
Sbjct: 184 TFVAKAFQGGGTDQIIAGLKTRFKDVRNIKPKASRQDSSEVFLVATGFK 232


>gi|221639177|ref|YP_002525439.1| Ribosomal RNA large subunit methyltransferase J [Rhodobacter
           sphaeroides KD131]
 gi|221159958|gb|ACM00938.1| Ribosomal RNA large subunit methyltransferase J [Rhodobacter
           sphaeroides KD131]
          Length = 229

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 134/207 (64%), Gaps = 5/207 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL R +NDPYV RA+ EG+R R+AYK+L++++K   L+   R+VDLG +PG W QV
Sbjct: 12  SSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCAPGGWCQV 71

Query: 85  AARITGS-----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
           A     +     N     V+ +D+ ++EPI G +  + DFL  D+ E ++  +GG  D+V
Sbjct: 72  AVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEIHQLDFLSDDADEKVKGWLGGRADVV 131

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    GH+  DHLR ++LCEAA  FA ++L  GG F+ K   GG  N++  LLKK+
Sbjct: 132 MSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAENELQALLKKN 191

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV +VKP ASRA+S E F++A GFR
Sbjct: 192 FTKVANVKPPASRADSSEKFVVAMGFR 218


>gi|330994695|ref|ZP_08318618.1| Ribosomal RNA large subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
 gi|329758336|gb|EGG74857.1| Ribosomal RNA large subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
          Length = 254

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/224 (40%), Positives = 138/224 (61%), Gaps = 8/224 (3%)

Query: 6   GSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           G ++R   T+ V  +  +G   +   WL R +NDPYVQ AQ +GWR+R+A+KL++++++ 
Sbjct: 29  GQAARTNRTKTVTVKKARGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRF 88

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
            +++   R+VDLG++PG W+QVA +   +      VV +D+L ++P+ G    + DF D 
Sbjct: 89  HLIRPGTRVVDLGAAPGGWTQVAVKRGAAE-----VVGVDLLPVDPVPGATVIEGDFNDP 143

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           D  + +   +GG  DLV+SDMA  T GH   DHLR + L E A  FA  +L   G F+ K
Sbjct: 144 DMPDRLTGLLGGRADLVMSDMAPNTTGHAPTDHLRIIGLAELALHFATRILAPDGAFVAK 203

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FQGG+   +L  LK+ F +V H KP ASR ES E++++A GFR
Sbjct: 204 VFQGGSEKQMLADLKRLFTQVRHAKPPASRKESSELYVVATGFR 247


>gi|294677155|ref|YP_003577770.1| ribosomal RNA large subunit methyltransferase J [Rhodobacter
           capsulatus SB 1003]
 gi|294475975|gb|ADE85363.1| ribosomal RNA large subunit methyltransferase J [Rhodobacter
           capsulatus SB 1003]
          Length = 259

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 151/245 (61%), Gaps = 19/245 (7%)

Query: 1   MVKPP-----------GSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEG 46
           M KPP            +S R     +V+ ++ +G   SS  WL R +NDPYV RA+ EG
Sbjct: 1   MTKPPSGKSGGAGSGKNTSGRGQRDLRVRVKTAKGRKLSSTLWLERQLNDPYVVRAKKEG 60

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA-ARITGSNANNTR----VVAI 101
           +R R+AYK++++++K + L    R+VDLG +PG W QVA AR+        +    V+ +
Sbjct: 61  YRGRAAYKIMELDDKFRFLVPGARVVDLGCAPGGWCQVAVARVNALGEKGGKKVGTVLGV 120

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           D+ ++  I G +  + DFL+  + + ++  +GG  D+V+SDMA    G++++DHLR ++L
Sbjct: 121 DLQEIAAIAGAELHQLDFLEDGADDKVKAWLGGRADVVMSDMAAAASGNQQVDHLRIITL 180

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           CE A +FA ++L +GG F+ K   GG    ++ +LKK+F+KV+++KP +SR +S E F++
Sbjct: 181 CEHAAYFAFDVLELGGTFVAKVLAGGAEQGLMTVLKKNFEKVVNMKPPSSRKDSSEKFVV 240

Query: 222 AKGFR 226
           A GFR
Sbjct: 241 ATGFR 245


>gi|329889243|ref|ZP_08267586.1| ftsJ-like methyltransferase family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844544|gb|EGF94108.1| ftsJ-like methyltransferase family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 240

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 145/225 (64%), Gaps = 8/225 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MV+ P  G+++ R + QK+K    +  SS+ W+ R ++D +  RA+ EGWR+R+A+KL++
Sbjct: 17  MVRLPTGGTAAGRKVGQKIKTADKKTLSSQAWIKRQLSDEWSDRARAEGWRSRAAFKLME 76

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K ++++   R++DLG++PG W QVA      +     V  +D+L +EPI G    + 
Sbjct: 77  IDDKFRLIKRGSRVIDLGAAPGGWVQVAL-----DRGAAAVAGVDLLMIEPIPGATLIQA 131

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D    + +  AIGG PDLVLSDMA+ T+GHR+ DHL+ ++L E A  FA+  L  GG
Sbjct: 132 DFTDPGVDQQMLDAIGGPPDLVLSDMAHNTVGHRQTDHLKIIALIEIAADFAIRTLRPGG 191

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +F+ K FQGG    +L  L++ F+ V +VKP +SR  S E+FL+A
Sbjct: 192 NFVSKNFQGGDAGGVLTRLREEFETVKYVKPESSRKGSAEVFLVA 236


>gi|89071362|ref|ZP_01158495.1| cell division protein ftsJ [Oceanicola granulosus HTCC2516]
 gi|89043139|gb|EAR49383.1| cell division protein ftsJ [Oceanicola granulosus HTCC2516]
          Length = 199

 Score =  184 bits (468), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 116/169 (68%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           +++++++L+   RIVDLG++PG W QVA   TGS A + RVV ID L +EP+ G      
Sbjct: 1   MDDRYKLLKPGHRIVDLGAAPGGWCQVAVDRTGSTAADVRVVGIDYLTVEPVAGATILLM 60

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DFLD  + + + + +G  PD+VLSD+A PT GHR  DH+RTM LC+ A  FA+  L  GG
Sbjct: 61  DFLDDAAPDKLMETLGEAPDIVLSDLAAPTTGHRPTDHIRTMHLCDVAADFAIRTLKPGG 120

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FL KTFQGGT  ++L LLK+HF  V HVKP ASR  SVE+++LAK F+
Sbjct: 121 HFLAKTFQGGTERELLTLLKRHFVSVHHVKPPASREGSVELYILAKSFK 169


>gi|114327810|ref|YP_744967.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|122327225|sp|Q0BT08|RLME_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114315984|gb|ABI62044.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 230

 Score =  184 bits (467), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 136/223 (60%), Gaps = 7/223 (3%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G   +  + +  + RS   +S+ WL R +NDPYV  A+ +GWR+R+A+KL+++++K  
Sbjct: 9   PTGPRGKVVMLKTARKRSV--ASQRWLTRQLNDPYVAAAKAQGWRSRAAFKLIELDDKFG 66

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           ++    R++DLG++PG W+QVA +          VV +D+L ++P+ G    + DF D D
Sbjct: 67  LISKGSRVIDLGAAPGGWTQVAMK-----RGAAVVVGVDLLPVDPVPGATLIQGDFNDDD 121

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               +   +GG  DLV+SDMA  T GH   DH+R ++L E A  FA + L  GG F+ K 
Sbjct: 122 MPARLSSLMGGKADLVMSDMAPNTTGHAATDHMRIIALTELALHFAFDALAPGGAFVAKV 181

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG+   +L  +K+ F  V H KP +SR ES E++++AKGFR
Sbjct: 182 FQGGSEKQLLEPMKQRFASVRHAKPASSRKESSELYVVAKGFR 224


>gi|258542575|ref|YP_003188008.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633653|dbj|BAH99628.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636712|dbj|BAI02681.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639765|dbj|BAI05727.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642821|dbj|BAI08776.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645876|dbj|BAI11824.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648929|dbj|BAI14870.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651916|dbj|BAI17850.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654973|dbj|BAI20900.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 263

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 137/215 (63%), Gaps = 8/215 (3%)

Query: 15  QKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           Q V  R+ +G   + + WL+R +NDPYVQ A  +GWR+R+A+KL++++++  +++   RI
Sbjct: 45  QSVSLRTARGRTTAQQRWLSRQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIRPGMRI 104

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG++PG W+QV  +   S     +VV +D+L +EP+ G +  + DF D +    +   
Sbjct: 105 VDLGAAPGGWTQVLVKRGAS-----QVVGVDLLPVEPVAGAEIIEGDFTDPEMDARLISM 159

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +GG  DLV+SDMA  T GH   DH+R + L E A  FA ++L  GG F+ K FQGG+   
Sbjct: 160 LGGKADLVVSDMAPNTTGHAPTDHVRIIGLAEEALHFAFDILAEGGGFVAKVFQGGSEKA 219

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  +K+ F +V H KP ASR +S E++++A GFR
Sbjct: 220 MLNTMKQAFTQVRHAKPPASRKDSSELYVVATGFR 254


>gi|329115331|ref|ZP_08244085.1| Ribosomal RNA large subunit methyltransferase E [Acetobacter
           pomorum DM001]
 gi|326695310|gb|EGE46997.1| Ribosomal RNA large subunit methyltransferase E [Acetobacter
           pomorum DM001]
          Length = 263

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 136/215 (63%), Gaps = 8/215 (3%)

Query: 15  QKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           Q V  R+ +G   + + WL+R +NDPYVQ A  +GWR+R+A+KL++++++  +++   RI
Sbjct: 45  QSVSLRTARGRTTAQQRWLSRQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIRPGMRI 104

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG++PG W+QV  +         +VV +D+L +EP+ G +  + DF D +    +   
Sbjct: 105 VDLGAAPGGWTQVLVK-----RGAAQVVGVDLLPVEPVTGAEIIEGDFTDPEMDARLISM 159

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +GG  DLV+SDMA  T GH   DH+R + L E A  FA ++L  GG F+ K FQGG+   
Sbjct: 160 LGGKADLVVSDMAPNTTGHAPTDHVRIIGLAEEALHFAFDILAEGGGFVAKVFQGGSEKA 219

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  +K+ F +V H KP ASR +S E++++A GFR
Sbjct: 220 MLNTMKQAFTQVRHAKPPASRKDSSELYVVATGFR 254


>gi|296112663|ref|YP_003626601.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           RH4]
 gi|295920357|gb|ADG60708.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           RH4]
 gi|326560921|gb|EGE11286.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           7169]
 gi|326563843|gb|EGE14094.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           46P47B1]
 gi|326566515|gb|EGE16661.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           12P80B1]
 gi|326566854|gb|EGE16993.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           103P14B1]
 gi|326569819|gb|EGE19869.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           BC8]
 gi|326571269|gb|EGE21291.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           BC1]
 gi|326571575|gb|EGE21590.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           BC7]
 gi|326575145|gb|EGE25073.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           CO72]
 gi|326576769|gb|EGE26676.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           101P30B1]
 gi|326577555|gb|EGE27432.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           O35E]
          Length = 210

 Score =  181 bits (459), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/211 (44%), Positives = 133/211 (63%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++KN+    SSR W+  HI+D YVQ+AQ EG+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRIKNKKLSKSSRAWMKEHIDDFYVQKAQKEGYRARAAYKLLEINEKTGLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA ++ G       ++A DIL M+ +  V F + DF +   +  I   +
Sbjct: 61  DLGSAPGSWSQVAGQLVGDAGT---LIASDILPMDTLENVIFIQGDFREEAVFNQIMNEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           GG   D+VLSDMA  T G   +D  R M LCE A  FAL++L +GG  ++K FQG  + +
Sbjct: 118 GGRAVDVVLSDMAPNTSGMAAVDQPRMMYLCELAVDFALKVLPVGGALIMKVFQGEGSQE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   ++K F K+  +KP ASR  S EMF +A
Sbjct: 178 LRAQMQKQFSKIKSIKPAASRPRSKEMFWVA 208


>gi|58584834|ref|YP_198407.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|75497746|sp|Q5GS59|RLME_WOLTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58419150|gb|AAW71165.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 216

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 141/217 (64%), Gaps = 13/217 (5%)

Query: 13  LTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           L  K + ++ +G   SS  WL+RH+ND YVQ+   + +R+RSAYKL++I+ K ++LQ+ +
Sbjct: 2   LAIKTRVKTAKGRKLSSTRWLHRHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQ 61

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +IVDLG+SPG WSQVA++         +VVAIDI  +  I GVK+ ++D  +L++   +R
Sbjct: 62  KIVDLGASPGGWSQVASQ------KGVKVVAIDIKPVNTISGVKYIQYDINELET---LR 112

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           +       D++LSDMA  + G + +DH+R M LCEAA  FA   LN GG F+VK FQG +
Sbjct: 113 ERFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQGES 172

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             D    LKK F+ V + KP +SR+ES EM+L+  GF
Sbjct: 173 DKDFYNELKKMFKIVKYFKPKSSRSESTEMYLVGLGF 209


>gi|89054472|ref|YP_509923.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Jannaschia sp. CCS1]
 gi|122498740|sp|Q28QW4|RLME_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88864021|gb|ABD54898.1| 23S rRNA Um-2552 2'-O-methyltransferase [Jannaschia sp. CCS1]
          Length = 237

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 144/232 (62%), Gaps = 6/232 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           MVK      +R L  KVK  R  + SS  WL R +NDPYV  A+ +G+R R+AYK++ ++
Sbjct: 1   MVKKTSGRGQRDLKVKVKTARGRKLSSTRWLERQLNDPYVAAARRDGYRGRAAYKIIDLD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-----RVVAIDILDMEPILGVKF 114
           +K++ L    R+VDLG +PG W QVA +   +    +     R++ +D+ +MEPI G + 
Sbjct: 61  DKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGEKSGKAVGRIIGLDLQEMEPIAGCEL 120

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            + DF++ D+   ++  +GG  D+V+SDMA    GH++ DH+R M+LCEAA   A ++L 
Sbjct: 121 HQLDFMEDDADLKVKDWLGGRADVVMSDMAASASGHKQTDHMRIMALCEAAAELAFDVLE 180

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K   GG    +  LLK+ F+KV +VKP ASRA+S E F++A GFR
Sbjct: 181 PGGTFVAKVLAGGAEGTLQRLLKQRFKKVANVKPGASRADSSEKFVVATGFR 232


>gi|34499253|ref|NP_903468.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
 gi|81654487|sp|Q7NRI3|RLME_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|34105104|gb|AAQ61460.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
          Length = 205

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL  H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 6   SSNNWLQEHVNDQYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSTPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AARI G      +V A+DILDM+P+ GV F + DF +        Q + G   DLV+SDM
Sbjct: 66  AARIVGEKG---KVFALDILDMDPVPGVDFIQGDFREEAVLREFEQLLDGRALDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  R+  LCE A  FA + L  GG FLVK FQG      L  +++ F +V
Sbjct: 123 APNMSGMSAIDQARSFLLCELALEFARDHLKPGGHFLVKVFQGSDFQPYLKAMRELFDEV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++LL KG R
Sbjct: 183 VTRKPKASRDRSSEIYLLGKGRR 205


>gi|226951533|ref|ZP_03821997.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter sp. ATCC 27244]
 gi|226837725|gb|EEH70108.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter sp. ATCC 27244]
          Length = 216

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 137/213 (64%), Gaps = 4/213 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +VDLG
Sbjct: 4   RITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLG 63

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PGSWSQ+A ++ GSN     V+A DIL+M+ +  V F + DF + D +E +   + G 
Sbjct: 64  AAPGSWSQIAGKLVGSNG---LVIASDILEMDALPDVTFLQGDFREEDVFEKLLNILNGR 120

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++   
Sbjct: 121 QVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRK 180

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 181 QVVDSFDVLKTAKPAASRARSKEVFLIGQGRKK 213


>gi|325265685|ref|ZP_08132374.1| ribosomal RNA large subunit methyltransferase J [Kingella
           denitrificans ATCC 33394]
 gi|324982816|gb|EGC18439.1| ribosomal RNA large subunit methyltransferase J [Kingella
           denitrificans ATCC 33394]
          Length = 213

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W++ H+NDPYVQRAQ +G+RAR+AYKLL+INEK ++++S   + DLGS+PGSWSQV
Sbjct: 14  SSPAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKSGTLLADLGSAPGSWSQV 73

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G +    +V A+DIL ME I GV F + DF + +        +G  P DLV+ DM
Sbjct: 74  AAKLVGPSG---QVFALDILPMERIDGVDFIQGDFREDEVLRQFENLLGNRPLDLVICDM 130

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA   L  GG FL+K FQG    + L  ++  FQ V
Sbjct: 131 APNMSGNAVTDQARSYYLCELALDFARNHLKPGGSFLIKVFQGAGYQEYLAEMRSLFQTV 190

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 191 QTRKPDASRNRSSEIYLLGKNKR 213


>gi|330504835|ref|YP_004381704.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
           NK-01]
 gi|328919121|gb|AEB59952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
           NK-01]
          Length = 207

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 130/203 (64%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL+M+ I  V F + DF D   +  + +AIG NP DLV+SDM
Sbjct: 66  TSRVIG---DKGRLIASDILEMDAIPDVTFIQGDFTDDAVFTRLLEAIGENPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +     +++ F KV
Sbjct: 123 APNMSGVRTADQARAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDAYHKQVRETFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|146308631|ref|YP_001189096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
           ymp]
 gi|189040321|sp|A4XYE8|RLME_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|145576832|gb|ABP86364.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas mendocina ymp]
          Length = 207

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL+M+ I  V F + DF D   +  I +AIG NP DLV+SDM
Sbjct: 66  TSRVIG---DKGRLIASDILEMDSIPDVTFIQGDFTDDAVFARILEAIGENPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +     ++  F KV
Sbjct: 123 APNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDTYHRQVRDSFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|226941815|ref|YP_002796889.1| FtsJ [Laribacter hongkongensis HLHK9]
 gi|226716742|gb|ACO75880.1| FtsJ [Laribacter hongkongensis HLHK9]
          Length = 205

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 129/206 (62%), Gaps = 10/206 (4%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WLN H++D +V  AQ EG+R+R+AYKLL+I++K ++L+    + DLGS+PGSWSQV
Sbjct: 6   TSAAWLNEHVHDHWVHMAQKEGYRSRAAYKLLEIHDKDKLLRPGMTVADLGSAPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFIRQAIGGNP-DLVL 140
           AA I G   ++ RV A+D+L+M  I GV F + DF +   LD +E +   + G P DLV+
Sbjct: 66  AAGIVG---DSGRVFALDLLEMAAIPGVDFIQGDFREDAVLDQFETL---LAGRPLDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID  R   LCE A  FA   L  GG FLVK FQG   ND L  ++  F
Sbjct: 120 SDMAPNLSGMASIDQARAAYLCELALDFARSHLKPGGAFLVKVFQGSEFNDYLAAMRSGF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            +V+  KP ASR  S E++LL KG R
Sbjct: 180 TQVLSRKPKASRDRSAEIYLLGKGLR 205


>gi|294651175|ref|ZP_06728507.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822928|gb|EFF81799.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 216

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 137/213 (64%), Gaps = 4/213 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +VDLG
Sbjct: 4   RITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLG 63

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PGSWSQ+A ++ GSN     V+A DIL+M+ +  V F + DF + + +E +   + G 
Sbjct: 64  AAPGSWSQIAGKLVGSNG---LVIASDILEMDALPDVTFLQGDFREEEVFEKLLNILNGR 120

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++   
Sbjct: 121 QVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRK 180

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 181 QVVDSFDVLKTAKPAASRARSKEVFLIGQGRKK 213


>gi|332970372|gb|EGK09364.1| ribosomal RNA large subunit methyltransferase J [Kingella kingae
           ATCC 23330]
          Length = 213

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W++ H+NDPYVQRAQ +G+RAR+AYKLL+INEK +++++   + DLGS+PGSWSQ+
Sbjct: 14  SSSAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKNGTALADLGSAPGSWSQI 73

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G      +V A+DIL M+ + GV F + DF +          +G  P DLV+ DM
Sbjct: 74  AAKLVGKEG---KVFALDILPMDALDGVDFIQGDFREESVLAQFENLLGNRPLDLVICDM 130

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+  +D  R+  LCE A  FA   L  GG+FLVK FQG    + +  +K  F  V
Sbjct: 131 APNMSGNAVMDQARSFYLCELALDFAQNHLKTGGNFLVKVFQGSGYQEYMAAMKTVFATV 190

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 191 QTRKPDASRNRSSEIYLLGKNKR 213


>gi|262371957|ref|ZP_06065236.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           junii SH205]
 gi|262311982|gb|EEY93067.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           junii SH205]
          Length = 216

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GSN     V+A DIL M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSNG---LVIASDILPMDALPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFIVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPEASRARSKEVFLIGQGRKK 213


>gi|50085896|ref|YP_047406.1| cell division protein [Acinetobacter sp. ADP1]
 gi|81392452|sp|Q6F8N1|RLME_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49531872|emb|CAG69584.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter sp. ADP1]
          Length = 216

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYRLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      V+A DIL M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVIASDILAMDTLPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRTVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPDGQFVVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTVKPAASRARSKEVFLIGQGRKK 213


>gi|262278061|ref|ZP_06055846.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258412|gb|EEY77145.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           calcoaceticus RUH2202]
          Length = 216

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 136/216 (62%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRVWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      VVA DIL M+ +  V F + DF + D +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVVASDILPMDALPDVTFLQGDFREEDVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGTGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPAASRARSKEVFLIGQGRKK 213


>gi|299769010|ref|YP_003731036.1| FtsJ-like methyltransferase family protein [Acinetobacter sp. DR1]
 gi|298699098|gb|ADI89663.1| FtsJ-like methyltransferase family protein [Acinetobacter sp. DR1]
          Length = 216

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 136/216 (62%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      V+A DIL M+ +  V F + DF + D +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVIASDILPMDALPDVSFLQGDFREEDVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G  +VK FQG   ++
Sbjct: 118 NGRQVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQLVVKVFQGAGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTVKPAASRARSKEVFLVGQGRKK 213


>gi|311696506|gb|ADP99379.1| ribosomal RNA large subunit methyltransferase J [marine bacterium
           HP15]
          Length = 206

 Score =  171 bits (434), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 132/203 (65%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H+NDP+V++AQ++G+R+R++YKLL+IN+K +++  N  +VDLGS+PG WSQV
Sbjct: 6   SSNRWLEEHVNDPFVKQAQVDGYRSRASYKLLEINKKDRLIHPNMVVVDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G   +  RV+A DIL M+ I GV F + DF + D +E I   +G +P D+V+SDM
Sbjct: 66  AAKLVG---HKGRVIASDILPMDAIAGVDFIQGDFTENDVFESIMATLGDDPVDVVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   +M L E A   A ++L   G FL K FQG   ++ L  ++  F KV
Sbjct: 123 APNISGVTVADQASSMYLVELALDMASQVLKPKGSFLAKVFQGEGYDEYLKSVRAVFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP +SR+ S E+++L KGF+
Sbjct: 183 VVRKPDSSRSRSREVYILGKGFK 205


>gi|226946314|ref|YP_002801387.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
           vinelandii DJ]
 gi|259494558|sp|C1DFL6|RLME_AZOVD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226721241|gb|ACO80412.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
           vinelandii DJ]
          Length = 207

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSHRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL M+ I  V F + DF D   +  + +AIG  P DLV+SDM
Sbjct: 66  TSRLIG---DRGRLIASDILPMDSIPDVTFIQGDFTDDAVFALLLEAIGEQPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +  D  R M LCE A   A  +L  GGDFL+K FQG   +  L  +++ F KV
Sbjct: 123 APNMSGVKAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYLRQVREGFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|331007339|ref|ZP_08330535.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC1989]
 gi|330418855|gb|EGG93325.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC1989]
          Length = 206

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  D YVQ++Q +G+R+R+ YKLL++N+K ++++ N  ++DLGS+PG WSQV
Sbjct: 6   SSKGWLEEHFKDKYVQQSQQDGYRSRACYKLLELNKKDKLIKKNMTVIDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           AA + G N     V+A DIL M+ I GV+F + DF +   +E I  A+ G   DLV+SDM
Sbjct: 66  AAELVGDNGT---VIASDILPMDGIAGVQFVQGDFTEDSVFEEIMNAMQGFKADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  ++D  R M L E A   A+  L +GG F+ K FQG   + +L   +K+F +V
Sbjct: 123 APNMSGMAEVDQPRAMYLVELALDMAVNTLEVGGGFVAKVFQGEGFDALLAETRKNFTRV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASRA S E++ +A GF+
Sbjct: 183 VTRKPDASRARSREVYWVATGFK 205


>gi|91775135|ref|YP_544891.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacillus
           flagellatus KT]
 gi|123380563|sp|Q1H387|RLME_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91709122|gb|ABE49050.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methylobacillus
           flagellatus KT]
          Length = 207

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H+ND +V+RAQ +G+RAR+AYKLL+I++K Q+++    IVDLGS+PGSWSQV
Sbjct: 6   TSKAWLQEHVNDEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGSWSQV 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           A  R+ G      RV+A+DIL+M PI GV+F + DF + +    + +++ G P DLV++D
Sbjct: 66  AVQRLAGQG----RVIALDILEMPPIPGVEFIQGDFREEEILLVLEKSLNGKPVDLVIAD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R   L E A  F+ E L  GG+FLVK F G   ++I+  ++  F+K
Sbjct: 122 MAPNISGISDVDQARAAYLVELALEFSREWLKPGGNFLVKVFVGSGFDEIVMAMRDSFEK 181

Query: 203 VIHVKPVASRAESVEMFLLA 222
           V+  KP ASR  S E++LL 
Sbjct: 182 VVTRKPKASRDRSSEVYLLG 201


>gi|225025120|ref|ZP_03714312.1| hypothetical protein EIKCOROL_02012 [Eikenella corrodens ATCC
           23834]
 gi|224942081|gb|EEG23290.1| hypothetical protein EIKCOROL_02012 [Eikenella corrodens ATCC
           23834]
          Length = 207

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WLN H+NDPYV +AQ +G+RAR+AYKLL+INEK +++++   + DLGS+PGSWSQV
Sbjct: 8   SSKSWLNEHVNDPYVHQAQKDGYRARAAYKLLEINEKDKLIKNGTVLADLGSAPGSWSQV 67

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A ++ G+     RV A+DIL MEPI GV F + DF + +  E +   + G   DLV+ D+
Sbjct: 68  AVKLAGAQG---RVFALDILPMEPIAGVSFIQGDFRENEVLEELENLLEGRALDLVICDI 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA E L  GG+ LVK FQG    + +  ++  F +V
Sbjct: 125 APNMSGNAVTDQARSYVLCELALDFAAEHLKTGGNMLVKVFQGAGFQEYMQAMRGVFAQV 184

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR+ S E++LL +  R
Sbjct: 185 QVRKPKASRSRSSEVYLLGRNKR 207


>gi|224823864|ref|ZP_03696973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Lutiella nitroferrum
           2002]
 gi|224604319|gb|EEG10493.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Lutiella nitroferrum
           2002]
          Length = 205

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS DWL  H++D YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 6   SSNDWLREHVHDHYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSAPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AAR+ G   +  +V A+DIL M PI  V+F + DF + +  +     +GG   DLV+SDM
Sbjct: 66  AARLVG---DKGKVYALDILPMNPIADVEFIQGDFREQEVLDQFVALLGGRELDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  R+  LCE A  F  + L  GG FLVK FQG      L  +++ F +V
Sbjct: 123 APNISGMSAIDQARSFHLCELALEFVRDHLKPGGSFLVKVFQGSDFQPYLKSMRELFDEV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++LL KG R
Sbjct: 183 VSRKPKASRDRSTEIYLLGKGRR 205


>gi|255318895|ref|ZP_05360121.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SK82]
 gi|262378850|ref|ZP_06072007.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SH164]
 gi|255304151|gb|EET83342.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SK82]
 gi|262300135|gb|EEY88047.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SH164]
          Length = 216

 Score =  171 bits (433), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   V+A DIL M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DKGLVIASDILPMDALADVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTVKPAASRARSKEVFLIGQGRKK 213


>gi|329120415|ref|ZP_08249081.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327462099|gb|EGF08427.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 228

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H+ND YV +AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQ 
Sbjct: 29  SSKAWLREHVNDHYVHQAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQA 88

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G++    +V A+DIL MEP+ GV F + DF + D      + +GG   DLV+ DM
Sbjct: 89  AAKLAGASG---KVFALDILPMEPVDGVSFVQGDFREADVLARFEELLGGRALDLVICDM 145

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    GH   D  +++ LC+ A  FA   L  GG FLVK FQG    +    +++ F  V
Sbjct: 146 APNMSGHSVTDQAKSLCLCQLALDFARCRLKPGGSFLVKAFQGAGYPEFTAQMRETFATV 205

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E +LL K  R
Sbjct: 206 QTRKPDASRGRSSETYLLGKNKR 228


>gi|296391579|ref|ZP_06881054.1| cell division protein FtsJ [Pseudomonas aeruginosa PAb1]
          Length = 207

 Score =  171 bits (432), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+SDM
Sbjct: 66  TSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F KV
Sbjct: 123 APNMSGVRAADQPRAMYLCELALDLARRVLRPGGDFLIKIFQGEGFDQYHKQAREMFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|71066294|ref|YP_265021.1| 23S rRNA methylase, heat shock protein [Psychrobacter arcticus
           273-4]
 gi|83305666|sp|Q4FQX1|RLME_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71039279|gb|AAZ19587.1| 23S rRNA methylase, heat shock protein [Psychrobacter arcticus
           273-4]
          Length = 210

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  +++N+    SS  W+  HI+D YVQ+AQ +G+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRIENKKLSKSSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA ++ G       ++A DIL M+ +  V F + DF + + ++ I   +
Sbjct: 61  DLGSAPGSWSQVAGQLVGEKGI---LIASDILPMDTLPDVTFIQGDFREPEVFDHIMAEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T G+  ID  R M LCE A  FAL  L  GG  ++K FQG  T +
Sbjct: 118 GDRQVDVVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEGGALIMKVFQGEGTQE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   ++  F K+  +KP ASR  S EMF +A
Sbjct: 178 LRKQMQADFSKIRSIKPGASRPRSKEMFWIA 208


>gi|261400135|ref|ZP_05986260.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           lactamica ATCC 23970]
 gi|269210130|gb|EEZ76585.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           lactamica ATCC 23970]
          Length = 206

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL MEPI GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSG---AVFALDILPMEPIGGVSFIQGDFRENDVLAQFEGLLNNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|107103849|ref|ZP_01367767.1| hypothetical protein PaerPA_01004920 [Pseudomonas aeruginosa PACS2]
          Length = 207

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   ++ R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+SDM
Sbjct: 66  TSRVIG---DHGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F KV
Sbjct: 123 APNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|15599946|ref|NP_253440.1| cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
 gi|116052899|ref|YP_793216.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893847|ref|YP_002442716.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
 gi|313109733|ref|ZP_07795673.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
 gi|12230965|sp|P95454|RLME_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122257090|sp|Q02FS0|RLME_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705300|sp|B7V1G4|RLME_PSEA8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|9951015|gb|AAG08138.1|AE004889_1 cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
 gi|115588120|gb|ABJ14135.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218774075|emb|CAW29891.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
 gi|310882175|gb|EFQ40769.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
          Length = 207

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+SDM
Sbjct: 66  TSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F KV
Sbjct: 123 APNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|152985989|ref|YP_001350794.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
 gi|189040320|sp|A6VCK9|RLME_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150961147|gb|ABR83172.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
          Length = 207

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+SDM
Sbjct: 66  TSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGEHPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F KV
Sbjct: 123 APNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|254238512|ref|ZP_04931835.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
 gi|254244346|ref|ZP_04937668.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
 gi|126170443|gb|EAZ55954.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
 gi|126197724|gb|EAZ61787.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
          Length = 207

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+SDM
Sbjct: 66  TSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F KV
Sbjct: 123 APNMSGVRASDQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP++SR  S E +LLA+GFR
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFR 205


>gi|194098119|ref|YP_002001167.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
 gi|239998575|ref|ZP_04718499.1| putative cell division protein [Neisseria gonorrhoeae 35/02]
 gi|240080282|ref|ZP_04724825.1| putative cell division protein [Neisseria gonorrhoeae FA19]
 gi|240115234|ref|ZP_04729296.1| putative cell division protein [Neisseria gonorrhoeae PID18]
 gi|240123075|ref|ZP_04736031.1| putative cell division protein [Neisseria gonorrhoeae PID332]
 gi|240125327|ref|ZP_04738213.1| putative cell division protein [Neisseria gonorrhoeae SK-92-679]
 gi|240127779|ref|ZP_04740440.1| putative cell division protein [Neisseria gonorrhoeae SK-93-1035]
 gi|254493296|ref|ZP_05106467.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
 gi|260440948|ref|ZP_05794764.1| putative cell division protein [Neisseria gonorrhoeae DGI2]
 gi|268594434|ref|ZP_06128601.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae 35/02]
 gi|268596430|ref|ZP_06130597.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae FA19]
 gi|268600914|ref|ZP_06135081.1| cell division protein [Neisseria gonorrhoeae PID18]
 gi|268681701|ref|ZP_06148563.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
 gi|268683928|ref|ZP_06150790.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686171|ref|ZP_06153033.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044276|ref|ZP_06569985.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae DGI2]
 gi|226703876|sp|B4RK82|RLME_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|193933409|gb|ACF29233.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512336|gb|EEH61681.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
 gi|268547823|gb|EEZ43241.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae 35/02]
 gi|268550218|gb|EEZ45237.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae FA19]
 gi|268585045|gb|EEZ49721.1| cell division protein [Neisseria gonorrhoeae PID18]
 gi|268621985|gb|EEZ54385.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
 gi|268624212|gb|EEZ56612.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626455|gb|EEZ58855.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011170|gb|EFE03166.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae DGI2]
 gi|317163849|gb|ADV07390.1| putative cell division protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 206

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ HIND YV  AQ +G+RAR+AYKLL+INEK +I++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHINDHYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSGT---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|59800827|ref|YP_207539.1| hypothetical protein NGO0383 [Neisseria gonorrhoeae FA 1090]
 gi|240013700|ref|ZP_04720613.1| hypothetical protein NgonD_03460 [Neisseria gonorrhoeae DGI18]
 gi|240016140|ref|ZP_04722680.1| hypothetical protein NgonFA_03058 [Neisseria gonorrhoeae FA6140]
 gi|240117521|ref|ZP_04731583.1| hypothetical protein NgonPID_03526 [Neisseria gonorrhoeae PID1]
 gi|240120769|ref|ZP_04733731.1| hypothetical protein NgonPI_03133 [Neisseria gonorrhoeae PID24-1]
 gi|268603220|ref|ZP_06137387.1| cell division protein [Neisseria gonorrhoeae PID1]
 gi|293399468|ref|ZP_06643621.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae F62]
 gi|75356299|sp|Q5F9L0|RLME_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|59717722|gb|AAW89127.1| putative methyltranferase involved in cell division [Neisseria
           gonorrhoeae FA 1090]
 gi|268587351|gb|EEZ52027.1| cell division protein [Neisseria gonorrhoeae PID1]
 gi|291610037|gb|EFF39159.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae F62]
          Length = 206

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ HIND YV  AQ +G+RAR+AYKLL+INEK +I++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHINDQYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSG---AVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|169632637|ref|YP_001706373.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii SDF]
 gi|169794969|ref|YP_001712762.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii AYE]
 gi|184159245|ref|YP_001847584.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213157620|ref|YP_002320418.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii AB0057]
 gi|215482520|ref|YP_002324708.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239503386|ref|ZP_04662696.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB900]
 gi|260549221|ref|ZP_05823441.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
           RUH2624]
 gi|260556451|ref|ZP_05828669.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii ATCC 19606]
 gi|301346065|ref|ZP_07226806.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB056]
 gi|301511493|ref|ZP_07236730.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB058]
 gi|301595416|ref|ZP_07240424.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB059]
 gi|332855128|ref|ZP_08435711.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013150]
 gi|332868236|ref|ZP_08438078.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013113]
 gi|332876154|ref|ZP_08443936.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6014059]
 gi|158513670|sp|A3M851|RLME_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703271|sp|B7GY18|RLME_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703272|sp|B7I636|RLME_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703273|sp|B2HXD3|RLME_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703274|sp|B0VSM4|RLME_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703275|sp|B0VEE9|RLME_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|169147896|emb|CAM85759.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii AYE]
 gi|169151429|emb|CAP00164.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii]
 gi|183210839|gb|ACC58237.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
 gi|193078152|gb|ABO13095.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|213056780|gb|ACJ41682.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii AB0057]
 gi|213986569|gb|ACJ56868.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260407627|gb|EEX01100.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
           RUH2624]
 gi|260409710|gb|EEX03010.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii ATCC 19606]
 gi|322509159|gb|ADX04613.1| Ribosomal RNA large subunit methyltransferase [Acinetobacter
           baumannii 1656-2]
 gi|323519187|gb|ADX93568.1| 23S rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|325123186|gb|ADY82709.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
 gi|332727631|gb|EGJ59050.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013150]
 gi|332733497|gb|EGJ64667.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013113]
 gi|332735652|gb|EGJ66697.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6014059]
          Length = 216

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 135/216 (62%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      V+A DIL M+ +  V F + DF +   +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVIASDILPMDALPDVTFLQGDFREEAVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPAASRARSKEVFLVGQGRKK 213


>gi|308448693|ref|XP_003087724.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
 gi|308253263|gb|EFO97215.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
          Length = 207

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 136/214 (63%), Gaps = 12/214 (5%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EKH++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKHKMIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   V+A DIL+M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DKGLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G FLVK FQG   ++
Sbjct: 118 NGRTVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFANKVLGPKGQFLVKVFQGTGFDE 177

Query: 192 ILCLLKKHFQKVIHV----KPVASRAESVEMFLL 221
                +KHF  +  V    KP ASRA S E+FL+
Sbjct: 178 ----FRKHFVDIFDVLKTAKPAASRARSKEVFLI 207


>gi|239996921|ref|ZP_04717445.1| 23S rRNA methyltransferase J [Alteromonas macleodii ATCC 27126]
          Length = 209

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 131/204 (64%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ WL  H+ND YVQ+A  EGWR+R+ YKL +I +K ++++    +VDLG++PG WSQ
Sbjct: 8   ASSKRWLQEHVNDHYVQKANKEGWRSRAIYKLEEIQKKDKLIKPGMTLVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           +AA++ G   +N +V+A DIL M+PI+GV F + DF +    + +   IGGN  D+VLSD
Sbjct: 68  LAAQLVG---DNGQVIACDILPMDPIVGVDFLQGDFREDAVLDALLNRIGGNTVDIVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R+M LCE A     ++L  GG F++K FQG    + +  LK+ F  
Sbjct: 125 MAPNLAGNASVDQSRSMYLCELALDMCHQVLKPGGSFVIKVFQGEGFVEFMNALKQSFTT 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           +   KP +SR+ S E++L+A G++
Sbjct: 185 IKTRKPDSSRSRSREVYLVACGYK 208


>gi|294787781|ref|ZP_06753025.1| ribosomal RNA large subunit methyltransferase J [Simonsiella
           muelleri ATCC 29453]
 gi|294484074|gb|EFG31757.1| ribosomal RNA large subunit methyltransferase J [Simonsiella
           muelleri ATCC 29453]
          Length = 195

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 122/198 (61%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +N H+NDPYVQRAQ +G+RAR+AYKLL+INEK +I++ N  + DLGS+PGSWSQVA ++ 
Sbjct: 1   MNEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKIIKPNTVLADLGSAPGSWSQVAIKLV 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
           G      +V A+DIL ME I GV+F + DF + D        +   P DLV+ DMA    
Sbjct: 61  GKQG---KVFALDILPMEHIDGVQFIQGDFREADVLAQFESLLENRPLDLVICDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +D  R+  LCE A  F+   L  GG FLVK FQG    + L  +++ F  V   KP
Sbjct: 118 GNAVMDQARSYYLCELALDFSQNHLKTGGCFLVKVFQGSGYQEYLTAMRETFTVVQTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR  S E++LL K  R
Sbjct: 178 DASRNRSSEIYLLGKNKR 195


>gi|121634592|ref|YP_974837.1| putative cell division protein [Neisseria meningitidis FAM18]
 gi|158513144|sp|A1KT57|RLME_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120866298|emb|CAM10039.1| putative cell division protein [Neisseria meningitidis FAM18]
          Length = 206

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSG---AVFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREFFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|240112494|ref|ZP_04726984.1| putative cell division protein [Neisseria gonorrhoeae MS11]
 gi|268598561|ref|ZP_06132728.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
 gi|268582692|gb|EEZ47368.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
          Length = 206

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ HIND YV  AQ +G+RAR+ YKLL+INEK +I++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHINDHYVHMAQKDGYRARATYKLLEINEKDKIIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSGT---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|120553329|ref|YP_957680.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter aquaeolei
           VT8]
 gi|143460489|sp|A1TXM4|RLME_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120323178|gb|ABM17493.1| 23S rRNA Um-2552 2'-O-methyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 207

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 131/203 (64%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H+NDP+V++AQ +G+R+R++YKLL+IN K ++++    +VDLGS+PG WSQV
Sbjct: 6   SSNRWLEEHVNDPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDM 143
           AA++ G   +  RVVA DIL M+PI GV+F + DF + + ++ I   + G   D+V+SDM
Sbjct: 66  AAKLVG---HKGRVVASDILPMDPIAGVEFIQGDFTEQEVFDQIMAILDGARADVVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   +M L E A   A ++L   G F+ K F G   ++ +  +++ F KV
Sbjct: 123 APNISGVNAADQAASMYLVELALDMACQVLKPKGSFVAKVFHGEGYDEYVKTVRESFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP +SRA S E++L+AKGFR
Sbjct: 183 VIRKPDSSRARSREVYLVAKGFR 205


>gi|87119799|ref|ZP_01075696.1| cell division protein FtsJ [Marinomonas sp. MED121]
 gi|86165275|gb|EAQ66543.1| cell division protein FtsJ [Marinomonas sp. MED121]
          Length = 196

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 133/198 (67%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H +D YV+R+Q +G+R+R++YKL++IN+K ++L+S  ++VDLG++PG WSQ+A R+ 
Sbjct: 1   MKEHFDDVYVKRSQQDGYRSRASYKLIEINDKDKLLKSGMKVVDLGAAPGGWSQIAGRLI 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
           G   +  RVVA DIL+M P+ GV F + DF + D ++ I +AIG  + DLV+SDMA    
Sbjct: 61  G---DKGRVVASDILEMAPLPGVTFVQGDFTEDDVYQEILKAIGDEHADLVISDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +D  ++M L E A   A ++L  GG+FLVK FQG   ++ L  ++  F  V+  KP
Sbjct: 118 GNSAVDQPQSMYLVELALDMASQVLRPGGNFLVKVFQGEGFDEYLKTMRGMFTSVVTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            +SRA S E++LL + F+
Sbjct: 178 ESSRARSREVYLLGRQFK 195


>gi|119477411|ref|ZP_01617602.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2143]
 gi|119449337|gb|EAW30576.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2143]
          Length = 207

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 129/204 (63%), Gaps = 4/204 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +D YVQRAQ EG+R+R+ YKLL++NEK +++++   ++DLGS+PG WSQV
Sbjct: 7   TSKGWLKEHFDDSYVQRAQREGYRSRACYKLLELNEKDKLIKAGMTVIDLGSAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA + G   +  RV+A DIL M+ + GV F + DF D   ++ I + + G   DLV+SDM
Sbjct: 67  AAELVG---DKGRVIASDILKMDNLAGVDFIQGDFTDQPVFDSIMEMLDGKEVDLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  ++M L E A   A ++L  GG+F+ K FQG   + +L  ++  F  V
Sbjct: 124 APNMSGMAAIDQPQSMYLVELALDMARQVLRPGGNFVAKVFQGEGFDQLLQDMRISFNSV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP ASRA S E++ L +GF++
Sbjct: 184 QSRKPAASRARSREVYQLGRGFKR 207


>gi|325131968|gb|EGC54667.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M6190]
 gi|325137799|gb|EGC60374.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis ES14902]
          Length = 206

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSG---AVFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|15676697|ref|NP_273841.1| cell division protein FtsJ [Neisseria meningitidis MC58]
 gi|161869743|ref|YP_001598910.1| cell division protein [Neisseria meningitidis 053442]
 gi|218767917|ref|YP_002342429.1| putative cell division protein [Neisseria meningitidis Z2491]
 gi|304387890|ref|ZP_07370064.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis ATCC 13091]
 gi|81542244|sp|Q9JQX5|RLME_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81707224|sp|Q7DDL2|RLME_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040316|sp|A9M3N1|RLME_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7226032|gb|AAF41212.1| cell division protein FtsJ [Neisseria meningitidis MC58]
 gi|121051925|emb|CAM08231.1| putative cell division protein [Neisseria meningitidis Z2491]
 gi|161595296|gb|ABX72956.1| cell division protein [Neisseria meningitidis 053442]
 gi|261392834|emb|CAX50415.1| ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
           methyltransferase; cell division protein FtsJ)
           [Neisseria meningitidis 8013]
 gi|304338155|gb|EFM04291.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis ATCC 13091]
 gi|308388985|gb|ADO31305.1| putative cell division protein [Neisseria meningitidis alpha710]
 gi|316983790|gb|EFV62771.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
           H44/76]
 gi|319410165|emb|CBY90501.1| ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
           methyltransferase; cell division protein FtsJ)
           [Neisseria meningitidis WUE 2594]
 gi|325127924|gb|EGC50827.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis N1568]
 gi|325129969|gb|EGC52768.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis OX99.30304]
 gi|325134056|gb|EGC56711.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M13399]
 gi|325135979|gb|EGC58589.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M0579]
 gi|325144164|gb|EGC66471.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M01-240013]
 gi|325198017|gb|ADY93473.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis G2136]
 gi|325200517|gb|ADY95972.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis H44/76]
 gi|325202406|gb|ADY97860.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M01-240149]
 gi|325206360|gb|ADZ01813.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M04-240196]
 gi|325207842|gb|ADZ03294.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis NZ-05/33]
          Length = 206

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSG---AVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|326797289|ref|YP_004315109.1| ribosomal RNA large subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
 gi|326548053|gb|ADZ93273.1| Ribosomal RNA large subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
          Length = 206

 Score =  167 bits (423), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 133/203 (65%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+ H+NDPYV++AQ++G+R+R++YKLL++N+K ++++    ++DLGS+PG WSQ+
Sbjct: 6   SSNRWLDEHVNDPYVKQAQVDGYRSRASYKLLELNDKDKLIKPGNLVMDLGSAPGGWSQI 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A+++ G   N  +V+A DIL M+ + GV+F + DF +   ++ I  A+ G P D+V+SDM
Sbjct: 66  ASKLVG---NKGKVIASDILPMDSLAGVEFIQGDFTEQSVFDEIMVAVNGAPVDVVVSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   ++ L E A   A ++L   G F VK F G   +  +  ++KHFQ V
Sbjct: 123 APNLSGIASSDQASSIYLVELALDMATQVLKPKGSFAVKVFHGEGYDAFVKEVRKHFQTV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP +SRA S E++L+ KGF+
Sbjct: 183 VVRKPDSSRARSREVYLVGKGFK 205


>gi|93006845|ref|YP_581282.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter
           cryohalolentis K5]
 gi|122414928|sp|Q1Q955|RLME_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|92394523|gb|ABE75798.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter
           cryohalolentis K5]
          Length = 210

 Score =  167 bits (423), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 129/211 (61%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  +++N+    SS  W+  HI+D YVQ+AQ +G+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRIENKKLSKSSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA  + G       ++A DIL M+ +  V F + DF + + ++ I   +
Sbjct: 61  DLGSAPGSWSQVAGHLVGEKGI---LIASDILPMDTLPDVTFIQGDFREPEVFDRIMAEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T G+  ID  R M LCE A  FAL  L  GG  ++K FQG  T +
Sbjct: 118 GDRQVDVVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEGGALIMKVFQGEGTQE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   ++  F K+  +KP ASR  S E+F +A
Sbjct: 178 LRKQMQADFSKIRSIKPGASRPRSKEIFWIA 208


>gi|313668721|ref|YP_004049005.1| cell division protein [Neisseria lactamica ST-640]
 gi|309379377|emb|CBX21944.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006183|emb|CBN87645.1| putative cell division protein [Neisseria lactamica 020-06]
          Length = 206

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TG++     V A+DIL ME + GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGTSG---AVFALDILPMEAVNGVSFIQGDFRENDVLAQFEGLLNNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|262376626|ref|ZP_06069854.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           lwoffii SH145]
 gi|262308336|gb|EEY89471.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           lwoffii SH145]
          Length = 216

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 139/216 (64%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSRDW+  H++DPYV++AQ +G+RAR+AYKLL++ EK++I++    +V
Sbjct: 1   MATRITNQKLSKSSRDWMREHLDDPYVKKAQKDGYRARAAYKLLEMQEKYKIIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   ++A DIL M+ +  V F + DF + + ++ + + +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DKGLLIASDILPMDALPDVTFLQGDFREEEVFQQLLEIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G++ +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 DGRIVDVVISDMAPNTSGNKAVDQPRQIYLCELALDFANKVLGPKGQFVVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP+ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTSKPLASRARSKEVFLIGQGRKK 213


>gi|261378830|ref|ZP_05983403.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
           ATCC 14685]
 gi|269144809|gb|EEZ71227.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
           ATCC 14685]
          Length = 206

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G +     V A+DIL ME + GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLAGPSG---AVFALDILPMEAVNGVSFIQGDFRENDVLAQFETLLNNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R++ LCE A  FA + L  GG FLVK FQG    + +  ++K F  V
Sbjct: 124 APNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMRKVFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|329893942|ref|ZP_08269977.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC3088]
 gi|328923397|gb|EGG30714.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC3088]
          Length = 208

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 128/205 (62%), Gaps = 4/205 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           + SS+ WL  H +D YVQRAQ EG+R+R+ YKL+++NEK ++L+    +VDLGS+PG WS
Sbjct: 5   KSSSKAWLKEHRDDVYVQRAQKEGYRSRACYKLIELNEKDRLLRPGMTVVDLGSAPGGWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           QVAA I G      RV+A DIL M+ +  V F + DF +   ++ + +AIG  P DLV+S
Sbjct: 65  QVAAGIVGVKG---RVIATDILPMDTLEDVDFIQGDFTEEAVFDALLEAIGDEPVDLVMS 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D  R M L E A   A  +L   G F+ K FQG   +++   L++ +Q
Sbjct: 122 DMAPNMSGMTAVDQPRAMYLVELAVDMASRVLAPKGAFVAKVFQGEGFDELFRSLREQYQ 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V+  KP ASR  S E++++AKGF+
Sbjct: 182 TVLTRKPDASRPRSREVYIVAKGFK 206


>gi|254804677|ref|YP_003082898.1| ribosomal RNA large subunit methyltransferase j [Neisseria
           meningitidis alpha14]
 gi|254668219|emb|CBA04997.1| ribosomal RNA large subunit methyltransferase j [Neisseria
           meningitidis alpha14]
 gi|254671945|emb|CBA04325.1| cell division protein FtsJ [Neisseria meningitidis alpha275]
 gi|325203884|gb|ADY99337.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M01-240355]
          Length = 206

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++TGS+     V A+DIL ME I GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLTGSSG---AVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|294669674|ref|ZP_06734741.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308587|gb|EFE49830.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 248

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WLN H+ND YV +AQ +G+RAR+AYKLL+INEK +++Q    + DLGS+PGSWSQV
Sbjct: 49  SSKAWLNEHVNDHYVHQAQKDGYRARAAYKLLEINEKDRLIQPGTVLADLGSAPGSWSQV 108

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           AA + G       V A+DIL MEPI GV F + DF + +        +G    DLV+ DM
Sbjct: 109 AAELAGEKGA---VFALDILPMEPIAGVSFIQGDFREDEVLAQFESLLGDRLLDLVICDM 165

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    GH   D  +++ LC+ A  FA   L   G FLVK FQG    + L  ++  F  V
Sbjct: 166 APNMSGHAVTDQAKSLYLCKLALDFARNHLKTNGHFLVKVFQGAGYTEFLAEMRAAFSSV 225

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL +  R
Sbjct: 226 QTRKPGASRNRSSEIYLLGRNKR 248


>gi|298368448|ref|ZP_06979766.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282451|gb|EFI23938.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 206

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKRGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G   ++ +V A+DIL M+ I GV F + DF + D        + G P DLV+ DM
Sbjct: 67  AAKLVG---DSGKVFALDILPMDEIEGVSFIQGDFREDDVLARFESLLAGRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA   L  GG+FLVK FQG    +    ++  F  V
Sbjct: 124 APNMSGNAVTDQARSYYLCELALDFAANHLKTGGNFLVKVFQGAGFQEYTAAMRAVFSTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL +  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGRNKR 206


>gi|302879458|ref|YP_003848022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
           capsiferriformans ES-2]
 gi|302582247|gb|ADL56258.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
           capsiferriformans ES-2]
          Length = 206

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  HINDP+VQ+AQ +G+R+R+AYKL++INEK  +++    IVDLG++PG W QV
Sbjct: 6   TSKQWMREHINDPFVQQAQKDGYRSRAAYKLIEINEKDHLIKPGMVIVDLGATPGGWCQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A  I G      +V+A+D+L +EP+ GV+F + DF D    + + +++ G P  LV+SDM
Sbjct: 66  AGAIMGETG---KVIALDLLPLEPLRGVEFIQGDFRDEAVLKKLEESLQGKPVGLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R++ L E A  FA + L   G FLVK FQG      + L++  F +V
Sbjct: 123 APNFSGVSAVDQDRSIYLAELAMEFAFDHLTRDGSFLVKVFQGTGFEAYMKLMRTKFTRV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
           +  KP ASR  S E++LL  G
Sbjct: 183 VARKPKASRDRSSEVYLLGTG 203


>gi|293609978|ref|ZP_06692280.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828430|gb|EFF86793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 207

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 130/204 (63%), Gaps = 4/204 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +VDLG++PGSWSQ+
Sbjct: 4   SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 63

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A ++ GS      V+A DIL M+ +  V F + DF +   +E +   + G   D+V+SDM
Sbjct: 64  AGKLVGSKG---LVIASDILPMDALPDVTFLQGDFREEAVFEKLLNILNGRQVDIVISDM 120

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++    +   F  +
Sbjct: 121 APNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFDVL 180

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP ASRA S E+FL+ +G +K
Sbjct: 181 KTAKPAASRARSKEVFLVGQGRKK 204


>gi|289207887|ref|YP_003459953.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           K90mix]
 gi|288943518|gb|ADC71217.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           K90mix]
          Length = 208

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DPYVQRAQ EG+R R+ YKL +I+E+ ++L+   R+VDLG++PG W+Q 
Sbjct: 7   SSQRWLKEHFDDPYVQRAQQEGYRGRAVYKLQEIDERDRLLKPGMRVVDLGAAPGGWTQY 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           AA+  G       +VA DIL M+P+ G      DF +    + I +A+ G   DLVLSDM
Sbjct: 67  AAQKIGRKGG---LVASDILPMDPVPGATIITGDFREDAVLQAILEALDGQRADLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  R++ LCE A   A ++LN  G  LVK FQG  ++  L  +++ F+KV
Sbjct: 124 APNLTGTDAIDQPRSIHLCELALELACDVLNPRGAMLVKLFQGEGSDAYLAEVRRRFEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E+++LA+G R
Sbjct: 184 QVRKPQASRPRSREVYVLARGPR 206


>gi|262369449|ref|ZP_06062777.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           johnsonii SH046]
 gi|262315517|gb|EEY96556.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           johnsonii SH046]
          Length = 216

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++D +V++AQ EG+RAR+AYKLL+I EK+ I++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDHFVKKAQKEGYRARAAYKLLEIQEKYNIIRPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   VVA DIL+M+ +  V F + DF + + ++ +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DRGLVVASDILEMDALPDVTFLQGDFREQEVFDKLLNIL 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G++ +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 DGRKVDVVISDMAPNTSGNKAVDQPRQIYLCELAIDFATKVLGPNGQFVVKVFQGTGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +  +F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDNFDVLKTVKPAASRARSKEVFLVGQGRKK 213


>gi|257454690|ref|ZP_05619946.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
           aerosaccus SK60]
 gi|257448000|gb|EEV22987.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
           aerosaccus SK60]
          Length = 210

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 132/211 (62%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  HI+D YV+ AQ +G+RAR+AYKLL+INEK Q+++    +V
Sbjct: 1   MATRITNKKLSKSSRAWMKEHIDDHYVKLAQRDGYRARAAYKLLEINEKLQLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA ++ G   +  +++A DIL M+ +  V F + DF +   ++ I   +
Sbjct: 61  DLGSAPGSWSQVAGKLVG---DTGKLIASDILPMDTLENVTFIQGDFREQAVFDNIMAEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                ++VLSDMA  T G   +D  R + LCE A  FA ++L  GG  ++K FQG  ++ 
Sbjct: 118 ADKKVEVVLSDMAPNTSGFSAVDQPRMIYLCELAMDFAEQVLPEGGTLVIKVFQGEGSDA 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   +++ F KV  +KP ASRA S EM+ +A
Sbjct: 178 LRKNMQQRFSKVRSIKPAASRARSKEMYWIA 208


>gi|332977760|gb|EGK14520.1| ribosomal RNA large subunit methyltransferase J [Psychrobacter sp.
           1501(2011)]
          Length = 210

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 130/211 (61%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N++   SS+ W+  H++D YVQ AQ EG+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRITNKTLSKSSKAWMKEHLDDHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA R+ G   +   ++A DIL M+ +  V F + DF + + ++ +   +
Sbjct: 61  DLGSAPGSWSQVAGRLVG---DEGILIASDILPMDALENVTFIQGDFREEEVFDKLMGEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T GH  +D  R + LCE A  FAL +L  GG  ++K FQG     
Sbjct: 118 GDRQVDVVLSDMAPNTSGHTAVDQPRMIYLCELAVDFALRVLPKGGSLVMKMFQGEGEQQ 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   L+  F KV  +KP ASR  S E+F +A
Sbjct: 178 LRQQLQSQFSKVRTIKPAASRPRSKEVFWVA 208


>gi|104780020|ref|YP_606518.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
           entomophila L48]
 gi|143461104|sp|Q1IF51|RLME_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|95109007|emb|CAK13703.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
           [Pseudomonas entomophila L48]
          Length = 208

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 7   SSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF   +  + I QA+G  + DLV+SDM
Sbjct: 67  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTQDEVLQQILQAVGDSHVDLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F KV
Sbjct: 124 APNMSGTPAVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLKDVRSKFDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL KGF+
Sbjct: 184 QMRKPSSSRDRSREQYLLGKGFK 206


>gi|77456998|ref|YP_346503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas fluorescens
           Pf0-1]
 gi|123606009|sp|Q3KI92|RLME_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77381001|gb|ABA72514.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 209

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 130/203 (64%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WL RH+NDPYV++AQ +G+R+R++YKLL+I EK+++++    +VDLG++PG WSQV
Sbjct: 6   TSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +      I +A+G +  DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  ++D  + M LCE A   A  +L  GG+F++K FQG   +  L   +K F K+
Sbjct: 123 APNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDTYLKDARKKFDKI 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
             +KP +SR  S E ++LA G+R
Sbjct: 183 QMIKPDSSRGSSREQYMLAWGYR 205


>gi|238021385|ref|ZP_04601811.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
 gi|237868365|gb|EEP69371.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
          Length = 206

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 123/200 (61%), Gaps = 4/200 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+ H+NDPYV+RAQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQ+
Sbjct: 7   SSPAWLHEHVNDPYVKRAQKDGYRARAAYKLLEINEKDKLIKQGTVLADLGSAPGSWSQI 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDM 143
           AA++ G      +V A+DIL M+ + GV F + DF +     EF R       DLV+ DM
Sbjct: 67  AAKLVGKTG---KVFALDILPMDALDGVDFIQGDFREEAVLAEFERLLDNRALDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+  ID  R+  LCE A  FA   L  GG FLVK FQG    + +  +++ F  V
Sbjct: 124 APNMSGNDTIDQARSFYLCELALDFARGHLKTGGAFLVKVFQGSGYQEYMAAMREVFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAK 223
              KP ASR  S E++LL K
Sbjct: 184 QTRKPDASRNRSSEIYLLGK 203


>gi|88797615|ref|ZP_01113204.1| cell division protein FtsJ [Reinekea sp. MED297]
 gi|88779787|gb|EAR10973.1| cell division protein FtsJ [Reinekea sp. MED297]
          Length = 206

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 129/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+DWL  H +DP+V +A+ +G+R+R++YKLL++ EK ++++    +VDLGS+PG WSQV
Sbjct: 6   NSKDWLKEHFDDPFVHKAKQDGYRSRASYKLLELCEKDRLIRPGMMVVDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AAR+ G   +  RVVA DIL+M+ +  V+F + DF D   ++ +   IG  P DLV+SDM
Sbjct: 66  AARMVG---DQGRVVASDILEMDAVPDVEFIQGDFTDEAVYQALLDCIGDRPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+  ID    M L E A   A  +L  GG F+ K F G   ++ +  +++ + KV
Sbjct: 123 APNMSGNAVIDQPAAMYLVELALDMAQSILRPGGAFVAKLFHGAGFDEYVKTVRQQYTKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASRA S E +++A GF+
Sbjct: 183 VMRKPEASRARSRETYIVATGFK 205


>gi|296313876|ref|ZP_06863817.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           polysaccharea ATCC 43768]
 gi|296839605|gb|EFH23543.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           polysaccharea ATCC 43768]
          Length = 206

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G +     V A+DIL ME + GV F + DF + D        +   P DLV+ DM
Sbjct: 67  AAKLAGPSG---AVFALDILPMEAVNGVSFIQGDFRENDVLAQFETLLNNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R++ LCE A  FA + L  GG FLVK FQG    + +  ++  F  V
Sbjct: 124 APNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMRGIFGTV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPEASRNRSSEIYLLGKNKR 206


>gi|148652346|ref|YP_001279439.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter sp.
           PRwf-1]
 gi|189040324|sp|A5WCU8|RLME_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|148571430|gb|ABQ93489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter sp.
           PRwf-1]
          Length = 210

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 128/211 (60%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SS+ W+  H++D YVQ AQ EG+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRITNKGLSKSSKAWMKEHLDDHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA R+ G   +   ++A DIL M+ +  V F + DF +   ++ +   +
Sbjct: 61  DLGSAPGSWSQVAGRLVG---DEGILIASDILPMDALENVTFIQGDFREEAVFDRLMSEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T GH  +D  R + LCE A  FAL +L  GG  ++K FQG     
Sbjct: 118 GDRQVDVVLSDMAPNTSGHTAVDQPRMIYLCELAVDFALRVLPKGGSLVMKVFQGEGEQQ 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   L+  F KV  +KP ASR  S E+F +A
Sbjct: 178 LRQQLQSQFSKVRTIKPAASRPRSKEVFWVA 208


>gi|99034839|ref|ZP_01314753.1| hypothetical protein Wendoof_01000429 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 192

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 128/193 (66%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG WSQVA++  G+N 
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQ-KGAN- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
               VVA+DI  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDIKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|217970150|ref|YP_002355384.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
 gi|217507477|gb|ACK54488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
          Length = 207

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 128/204 (62%), Gaps = 4/204 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +SR W++ H+NDP+VQRAQ EG+RAR+A+KLL+I+E+  +L+    +VDLG++PGSW Q+
Sbjct: 6   TSRAWVHDHVNDPWVQRAQAEGYRARAAFKLLEIDERDHLLRPGAVVVDLGAAPGSWCQL 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A +  G      R+ A+D+L MEP+ GV+F   DF +    E +   +GG + D+VLSDM
Sbjct: 66  AVKRCGPKG---RIFALDLLPMEPVAGVEFLLGDFTEDAVLEELEARLGGASVDVVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R++ LCE A  FA+  L  GG F+VK FQG    +    ++  F  V
Sbjct: 123 APNLSGVATVDQARSVHLCELALDFAVRHLKPGGQFVVKVFQGEGFMEYRKQMEAAFVSV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP ASR  S E++L+ +G R+
Sbjct: 183 QVRKPKASRDRSAEVYLVGRGPRR 206


>gi|330807476|ref|YP_004351938.1| ribosomal RNA large subunit methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375584|gb|AEA66934.1| Ribosomal RNA large subunit methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 210

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WL  H NDP+V+ AQ +G+R+R++YKLL+I E+ ++++    ++DLG++PG WSQV
Sbjct: 6   TSLKWLQEHFNDPFVKMAQKDGYRSRASYKLLEIQERDRLIRPGMSVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G       ++A DIL+M+ I  V F + DF +      I +A+G N  DLV+SDM
Sbjct: 66  TSRLIGGQGT---LIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGKNEVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R+M LCE A   A  +L  GGDFL+K FQG   ++    ++K F+KV
Sbjct: 123 APNMSGLASVDMPRSMFLCELALDLATRVLKPGGDFLIKVFQGEGFDEYHKSVRKQFEKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL +GFR
Sbjct: 183 TTRKPKSSRDRSREQYLLGRGFR 205


>gi|152995050|ref|YP_001339885.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
 gi|150835974|gb|ABR69950.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
          Length = 196

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 126/198 (63%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H +DPYV+++Q +G+R+R++YKL++IN+K ++ +   R+VDLG++PG WSQVAA++ 
Sbjct: 1   MKEHFDDPYVKKSQQDGYRSRASYKLIEINDKDKLFKPAMRVVDLGAAPGGWSQVAAKLV 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
           G +     +VA DIL+M P+ GV F + DF + + +E I   IG    DLV+SDMA    
Sbjct: 61  GDHGT---IVASDILEMAPLPGVSFVQGDFTEQEVYEAILAEIGDKKADLVISDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   D  + M L E A   A ++L  GG+FLVK FQG    + L  ++  F  V+  KP
Sbjct: 118 GNSSSDQPQAMYLVELALDMAAQVLRPGGNFLVKVFQGEGFEEYLKTMRAQFDSVVTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            ASRA S E++LL + ++
Sbjct: 178 DASRARSREVYLLGRQYK 195


>gi|170719899|ref|YP_001747587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
 gi|226705301|sp|B1J262|RLME_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|169757902|gb|ACA71218.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
          Length = 208

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 7   SSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF   +  + I  A+G  + DLV+SDM
Sbjct: 67  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTQDEVLQQILDAVGDSHVDLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  ++D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F KV
Sbjct: 124 APNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLKDVRTKFDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL KGF+
Sbjct: 184 QMRKPSSSRDRSREQYLLGKGFK 206


>gi|42519983|ref|NP_965898.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81652913|sp|Q73IS9|RLME_WOLPM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|42409720|gb|AAS13832.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 192

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 128/193 (66%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG WSQVA++  G+N 
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQ-KGAN- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
               VVA+DI  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDIKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|163857845|ref|YP_001632143.1| ribosomal RNA large subunit methyltransferase j [Bordetella petrii
           DSM 12804]
 gi|226703282|sp|A9HYV0|RLME_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|163261573|emb|CAP43875.1| ribosomal RNA large subunit methyltransferase j [Bordetella petrii]
          Length = 211

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 130/204 (63%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKMAQQKGYRARAAFKLIEILDTEKLMRRGDIVVDLGSAPGSWSQVA 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G     + R++A+D+L MEP+ GV+F + DF D    + +++ +GG P  LV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRDEAVLQQLQEMVGGQPVSLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  FA   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGVADSARIQHVCELALDFACNHLKPDGALIVKAFHGSGFSQIVQSFKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|114321125|ref|YP_742808.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311297|sp|Q0A769|RLME_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114227519|gb|ABI57318.1| 23S rRNA Um-2552 2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 209

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ H +D +VQ+AQ  G+R+R+A+KLL+I EK ++++    +VDLG++PG W QVAA +
Sbjct: 13  WLDEHHSDHWVQQAQKAGYRSRAAFKLLEIQEKDRLIRPGMTVVDLGAAPGGWCQVAAEL 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G   +   V A+DIL ME + GV   + DF +    + + QA+ G P DLVLSDMA   
Sbjct: 73  VG---DRGAVFALDILPMEALPGVHVIQGDFTEEAPLQALLQALEGRPVDLVLSDMAPNL 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G R +D  R M L E A  FA ++L  GGDFL K F G   +D    L++ F KVI  K
Sbjct: 130 SGVRVVDQPRAMYLAELALDFAGQVLQPGGDFLTKVFHGEGLDDYRRDLQRQFSKVITRK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S E +LLA+GF
Sbjct: 190 PRASRARSRESYLLARGF 207


>gi|325276157|ref|ZP_08141962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
 gi|324098694|gb|EGB96735.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
          Length = 208

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 7   SSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    + I  A+G  + DLV+SDM
Sbjct: 67  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAVLQQILDAVGDSHVDLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  ++D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F KV
Sbjct: 124 APNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLKDVRTKFDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL KGF+
Sbjct: 184 QMRKPSSSRDRSREQYLLGKGFK 206


>gi|304310499|ref|YP_003810097.1| Cell division protein FtsJ [gamma proteobacterium HdN1]
 gi|301796232|emb|CBL44440.1| Cell division protein FtsJ [gamma proteobacterium HdN1]
          Length = 206

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 4/202 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +DPYV++AQ +G+R+R+AYKLL+I EK +IL+    ++DLG++PG WSQV
Sbjct: 6   SSSRWLREHFDDPYVKKAQQDGYRSRAAYKLLEIQEKDRILKQGMTVLDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AAR  G   +   V+A D L+M+P+ GV F + DF + + +  + Q  G    DLV+SDM
Sbjct: 66  AARYVGDAGH---VIASDRLEMDPLYGVDFLQGDFCEEEVFAKLLQMTGNRGIDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+R +D  R M L E A   A  +L  GG  LVK FQG   + +   +  HF+++
Sbjct: 123 APNMSGNRAVDQPRAMYLVELALDMATRVLKPGGSLLVKVFQGEGFDSLRKDMHTHFRQL 182

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP ASR+ S E + LAK +
Sbjct: 183 QTRKPDASRSRSAETYWLAKDY 204


>gi|160872297|ref|ZP_02062429.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
           grylli]
 gi|159121096|gb|EDP46434.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
           grylli]
          Length = 209

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 126/204 (61%), Gaps = 4/204 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           + SS+ WLN H  DPYV+RA+ EG+R+RSAYKLL+I EK ++++    IVDLG++PG WS
Sbjct: 5   KSSSQRWLNEHFKDPYVKRAKKEGFRSRSAYKLLEIQEKTKLIKPGMVIVDLGAAPGGWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           Q+A+R+ G+     +V A+DIL ME +  V+F + DF +    + + Q I   P DLV+S
Sbjct: 65  QIASRLVGTTG---KVYALDILPMETLTPVEFLQGDFREESVIKQLLQRIQSKPIDLVIS 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G R +D  R + L E A  FA ++L   G F+VK FQG      L  L+  F 
Sbjct: 122 DMAPNFSGIRSVDQPRAIFLAELALDFAKKVLKPKGYFVVKAFQGKGFEAFLKELRSLFA 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP ASR  S E++L+A G+
Sbjct: 182 NVTIRKPSASRGRSTEVYLVAIGY 205


>gi|297539174|ref|YP_003674943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera sp. 301]
 gi|297258521|gb|ADI30366.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera sp. 301]
          Length = 206

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 129/202 (63%), Gaps = 6/202 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W++ HIND +V+RAQ EG+RAR+AYKL +I++K ++++    IVDLGS+PGSWSQV
Sbjct: 6   SSKAWMHEHINDEFVKRAQKEGYRARAAYKLTEIDDKDKLIKPGMTIVDLGSTPGSWSQV 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           A  R+ G      R++A+D+L+MEPI GV+F + DF +    E + +++ G   DLV++D
Sbjct: 66  AVQRLKGQG----RIIALDLLEMEPIKGVEFIQGDFREETILEILEKSLNGKQVDLVIAD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D      L E A  F+ E L   G+FLVK F G   +DI+  ++  F K
Sbjct: 122 MAPNMSGITIVDQAGAAYLTELALEFSKEWLKPSGNFLVKVFIGEGFDDIVKNMRTIFDK 181

Query: 203 VIHVKPVASRAESVEMFLLAKG 224
           V+  KP ASR  S E++LL  G
Sbjct: 182 VVTRKPKASRGRSSEVYLLGLG 203


>gi|33596681|ref|NP_884324.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           parapertussis 12822]
 gi|33600444|ref|NP_888004.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           bronchiseptica RB50]
 gi|81427145|sp|Q7W8R6|RLME_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81431686|sp|Q7WMD3|RLME_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33568043|emb|CAE31956.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           bronchiseptica RB50]
 gi|33573382|emb|CAE37366.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           parapertussis]
          Length = 210

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 130/204 (63%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KLL+I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKLMRRGDIVVDLGSAPGSWSQVA 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G   A + R++A+D+L MEP+ GV+F + DF +    E + + + G P DLV+SD
Sbjct: 67  RERLAGPGGAVDGRIIALDLLPMEPVAGVEFIQGDFREEAVLEQLARMVEGQPVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  FA   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGVADSARIQHVCELALEFACAHLKPNGALIVKAFHGSGFSQIVQSYKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|33592218|ref|NP_879862.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis Tohama I]
 gi|81578758|sp|Q7VZ56|RLME_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33571863|emb|CAE41377.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis Tohama I]
 gi|332381635|gb|AEE66482.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis CS]
          Length = 210

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 130/204 (63%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KLL+I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKLMRRGDVVVDLGSAPGSWSQVA 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G     + R++A+D+L MEP+ GV+F + DF + +  E + + + G P DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFREEEVLEQLARMVDGQPVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  FA   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGVADSARIQHVCELALEFACAHLKPNGALIVKAFHGSGFSQIVQSYKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|293606999|ref|ZP_06689343.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
           piechaudii ATCC 43553]
 gi|292814596|gb|EFF73733.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
           piechaudii ATCC 43553]
          Length = 210

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 129/204 (63%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++++    ++DLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLIEILDTEKLMRRGDLVIDLGSAPGSWSQVA 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G     + R++A+D+L MEP+ GV+F + DF D D  + +   +G    DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRDDDVLKQLEDMVGSRAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  F+   L   G  +VK F G   + I+   K+HF++
Sbjct: 127 MAPNLSGVGSADSARIQHVCELAMEFSRAHLKPNGALIVKAFHGSGFSQIVQTFKQHFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|167035711|ref|YP_001670942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
 gi|189040323|sp|B0KHY6|RLME_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|166862199|gb|ABZ00607.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
          Length = 208

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 7   SSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF   +  + I +A+G  + DLV+SDM
Sbjct: 67  TSRLIGGQG---RLIASDILEMDSIADVTFIQGDFTHDEVLQRILEAVGDSHVDLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F KV
Sbjct: 124 APNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLKDVRSKFDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL +GF+
Sbjct: 184 QMRKPSSSRDRSREQYLLGRGFK 206


>gi|291415281|ref|XP_002723882.1| PREDICTED: FtsJ homolog 2 [Oryctolagus cuniculus]
          Length = 740

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 93/226 (41%), Positives = 135/226 (59%), Gaps = 9/226 (3%)

Query: 10  RRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           RRG  Q    R  SC G+   WL RH+ DP+V+ A+ E +R RSA+KLL+++ KH+IL+ 
Sbjct: 13  RRGPVQAAGGRRESCSGAEHRWLQRHLRDPFVKAARAESYRCRSAFKLLEMDRKHRILRP 72

Query: 68  NRRIVDLGSSPGSWSQVAA-RITGSNANNTR----VVAIDILDMEPILGVKFF-KFDFLD 121
             R++D G++PGSWSQVA  R+  +  + +     V+ +D+L + P+ G  F    D +D
Sbjct: 73  GLRVLDCGAAPGSWSQVAVQRVNAAGTDPSSPVGFVLGVDVLHVFPLEGATFLCPADVMD 132

Query: 122 LDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
             +W  IR+ + GG  D+VLSDMA    G R +DH R +SLC A    A ++L  GG  L
Sbjct: 133 PGAWPRIRELLPGGVADVVLSDMAPNATGIRALDHDRLISLCLALVDLAPDLLQPGGTLL 192

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            KT+ G  ++ +   L++ F  V  VKP ASR ES E++LLA   R
Sbjct: 193 CKTWAGSQSHRLQSRLREEFLSVRAVKPEASRKESAEVYLLATQHR 238


>gi|82701616|ref|YP_411182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosospira multiformis
           ATCC 25196]
 gi|123545045|sp|Q2YBT1|RLME_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|82409681|gb|ABB73790.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 206

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 126/204 (61%), Gaps = 6/204 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+ND +V++A+ EG+R+R+AYKL++I E+  + +    +VDLG++PG WSQV
Sbjct: 6   TSKAWMKEHVNDFFVRQAKKEGYRSRAAYKLMEIAERDHLFKPGMTVVDLGAAPGGWSQV 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           AA ++ G      R VA+DIL+M PI GV F + DF +      +++ +   P DLV+ D
Sbjct: 66  AAEKLKGKG----RAVALDILEMAPISGVTFIQGDFREASVLAELKEQLKDLPVDLVICD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           M+    G R ID  R M L E A  F  E LN GG+FLVK FQG   ++    ++  F +
Sbjct: 122 MSPNITGIRVIDQTRGMHLAELALEFCTEQLNSGGNFLVKVFQGSGFDEFFRAMRATFHR 181

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP+ASR  S E++LL  G R
Sbjct: 182 VVTRKPLASRGRSSEIYLLGLGKR 205


>gi|221134032|ref|ZP_03560337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola sp. HTCC2999]
          Length = 206

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 127/202 (62%), Gaps = 4/202 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ W+  H+NDPYV++AQ++G+R+R++YKL++INEK Q+++    ++DLGS+PG WSQV 
Sbjct: 7   SKKWMEDHLNDPYVKKAQVDGYRSRASYKLIEINEKDQLVRPGNIVMDLGSAPGGWSQVL 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
           A + G   +  RV+A DIL M+ I+GV F + DF D   +  I + +G +  D V+SDMA
Sbjct: 67  APMVG---DAGRVIASDILPMDSIVGVSFLQGDFTDEAVYNAILKELGDDRVDTVVSDMA 123

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G+   D   ++ L E A   A  +L  GG F  K FQG    + +  +++ F KVI
Sbjct: 124 PNLSGNNTTDQYSSIYLVELALDMARNVLKPGGGFCAKVFQGVGYEEYVKEVRQSFSKVI 183

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E++++ KGF+
Sbjct: 184 IRKPAASRPRSREVYVVGKGFK 205


>gi|26991402|ref|NP_746827.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida
           KT2440]
 gi|148549787|ref|YP_001269889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida F1]
 gi|81439657|sp|Q88DV0|RLME_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040322|sp|A5W995|RLME_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|24986472|gb|AAN70291.1|AE016670_1 ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
           KT2440]
 gi|148513845|gb|ABQ80705.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida F1]
 gi|313500628|gb|ADR61994.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas putida
           BIRD-1]
          Length = 207

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 7   SSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF   +  + I +A+G  + DLV+SDM
Sbjct: 67  TSRLIGGQG---RLIASDILEMDSIADVTFIQGDFTHDEVLQRILEAVGDSHVDLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F KV
Sbjct: 124 APNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLKDVRSKFDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL +GF+
Sbjct: 184 QMRKPSSSRDRSREQYLLGRGFK 206


>gi|126664481|ref|ZP_01735465.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
 gi|126630807|gb|EBA01421.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
          Length = 206

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H+NDP+V++AQ++G+R+RS+YKLL+IN K +++Q    ++DLGS+PG WSQV
Sbjct: 6   SSNRWLEEHVNDPFVKKAQMDGYRSRSSYKLLEINAKDKLIQPTMTVMDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDM 143
           A  + G   +  RV+A DIL M+ + GV+F + DF +   +E I   +     D+V+SDM
Sbjct: 66  ATDLVG---HKGRVIASDILPMDAVAGVEFIQGDFTENAVFEEIMAVLRDAKVDVVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   +M L E A   A ++L   G F+ K F GG  +  +  +++ F KV
Sbjct: 123 APNISGVNAADQAASMYLIELALDMASQVLKPKGSFVAKVFHGGGYDGYVKAVREQFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP +SRA S E++L+ KGFR
Sbjct: 183 VVRKPDSSRARSREVYLVGKGFR 205


>gi|317405975|gb|EFV86253.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
           xylosoxidans C54]
          Length = 210

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 130/204 (63%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++L+    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKMAQQKGYRARAAFKLIEILDTEKLLRRGDLVVDLGSAPGSWSQVA 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G     + R++A+D+L MEP+ GV+F + DF + D  + +   +G    DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDMLPMEPVAGVEFIQGDFREDDILKQLEDMVGSRAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  F+L  L   G  +VK F G   + I+   K+HF++
Sbjct: 127 MAPNLSGVGIADAARIQHVCELAMEFSLAHLKPNGALIVKAFHGTGFSQIVESYKQHFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|220934156|ref|YP_002513055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254809560|sp|B8GNX9|RLME_THISH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|219995466|gb|ACL72068.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 207

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV+RAQ EG+R+R+ YKL +I E+ ++L+    +VDLG++PG W+Q 
Sbjct: 6   SSHRWLKEHFDDEYVKRAQQEGYRSRAVYKLQEIQERDRLLRQGMTVVDLGAAPGGWTQY 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           AA + G +    RVVA DIL M+P+ GV   + DF + +  E +   +G G  DLV+SDM
Sbjct: 66  AAGLVGKHG---RVVASDILPMDPLPGVTIVEGDFREAEVLERLLAVLGEGGADLVMSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A   A  +L  GGDFLVK FQG   ++ + +L+  + KV
Sbjct: 123 APNMSGMDAVDQPRAMYLAELAAELARTVLKPGGDFLVKLFQGAEFDEYVRMLRTEYDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              KP ASR  S E++ +A+G
Sbjct: 183 SIRKPKASRPRSREVYAVARG 203


>gi|241758799|ref|ZP_04756912.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           flavescens SK114]
 gi|241321007|gb|EER57220.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           flavescens SK114]
          Length = 206

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+ DM
Sbjct: 67  AAKLVGKTG---AVFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    +++ F  V
Sbjct: 124 APNMSGNAVTDQARSFYLCELALDFAFQHLKTGGSFLVKVFQGAGYQEYTAAMREIFASV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPDASRNRSSEIYLLGKNKR 206


>gi|225677266|ref|ZP_03788249.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590686|gb|EEH11930.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 192

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 125/193 (64%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG WSQVA++      
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQ------ 54

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            +  VVA+D+  M  I GV+F + D ++    E +R+       D++LSDMA  + G + 
Sbjct: 55  KDANVVALDVKPMNAINGVEFIQCDIIN--ELEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|119897677|ref|YP_932890.1| ribosomal RNA large subunit methyltransferase J [Azoarcus sp. BH72]
 gi|143459390|sp|A1K598|RLME_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119670090|emb|CAL94003.1| ribosomal RNA large subunit methyltransferase j [Azoarcus sp. BH72]
          Length = 205

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W++ H+ND YVQRA  EG+RAR+AYKL++I+E+ ++L+  R +VDLG++PGSW QV
Sbjct: 6   TSKAWMHEHLNDTYVQRANAEGYRARAAYKLMEIDERDRLLRPGRVVVDLGAAPGSWCQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDM 143
           A +  GS+    RV+A+DIL M+P+ GV F + DF  D    E   +  G   DLVLSDM
Sbjct: 66  ARQRVGSDG---RVLALDILPMDPVPGVDFLQGDFTEDAVLAELESRLAGAAVDLVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R++ LCE A  FA   L  GG FLVK FQG         + + F  V
Sbjct: 123 APNLSGVATVDQARSIYLCELALDFARRHLKPGGQFLVKVFQGEGFMGFRKAMDEVFLSV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL    R
Sbjct: 183 QVRKPKASRDRSAEVYLLGVDLR 205


>gi|254281755|ref|ZP_04956723.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR51-B]
 gi|219677958|gb|EED34307.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR51-B]
          Length = 206

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 123/205 (60%), Gaps = 4/205 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           + SSR WL  H  DPYVQRAQ EG+R+R+ YKLL++NE+ ++++    ++DLG++PG WS
Sbjct: 5   KSSSRAWLKEHREDPYVQRAQKEGYRSRACYKLLELNERDRLIRPGMTVLDLGAAPGGWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLS 141
           QVAA + G+     RVVA DIL M+ + GV F + DF +   ++  + +     P LV+S
Sbjct: 65  QVAANLVGAKG---RVVASDILPMDSLAGVTFLQGDFTEEAIYQKLLAEFELAPPQLVMS 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D  R M+L E A   A+ +L  GG F+ K F G     +L   +  F 
Sbjct: 122 DMAPNLSGMTAVDQPRAMALVELALDLAVTLLPPGGAFVAKVFHGEGFEPLLKACRGQFD 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +V+  KP ASR  S E++L+A G R
Sbjct: 182 RVLTRKPTASRPRSREVYLVATGKR 206


>gi|254516625|ref|ZP_05128684.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR5-3]
 gi|219675048|gb|EED31415.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR5-3]
          Length = 212

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 130/209 (62%), Gaps = 7/209 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           VK RS   SS+ WL  H  DPYVQ+AQ +G+R+R+ YKLL++ E+ ++++    I+DLGS
Sbjct: 2   VKKRS---SSKAWLREHREDPYVQQAQRDGYRSRACYKLLELQERERLIRPGMTILDLGS 58

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG WSQVAA + G   ++ +V+A DIL M+ I GV F + DF +   +E I   + G P
Sbjct: 59  APGGWSQVAAALVG---DHGQVIASDILPMDSIAGVDFVEGDFTENAVFERILTTLNGKP 115

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G   +D  +++ L E A   A  +L  GG F+ K FQG   +++   
Sbjct: 116 ADLVISDMAPNMSGVSAVDQPKSIYLVELALDMACRVLAPGGVFVTKVFQGEGFDELFKA 175

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            ++ F KV+  KP ASR  S E++L+A+G
Sbjct: 176 TREQFDKVLTRKPTASRPRSREVYLVARG 204


>gi|319942668|ref|ZP_08016975.1| ribosomal RNA large subunit methyltransferase E [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803751|gb|EFW00686.1| ribosomal RNA large subunit methyltransferase E [Sutterella
           wadsworthensis 3_1_45B]
          Length = 217

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 131/205 (63%), Gaps = 3/205 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S+R W+ RHINDP+V+R++ EG+RARS YKL++++EK  +L+    +VDLGS+PGSW+QV
Sbjct: 10  SNRAWIERHINDPFVKRSRAEGYRARSVYKLIELDEKEHLLKPGSTVVDLGSAPGSWTQV 69

Query: 85  A-ARITGSNAN-NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
              R+ G + +   R++A+DIL M+PI  V F + DF + +  + + + + G+  D+VLS
Sbjct: 70  VRERLAGPDGSVRGRIIAMDILPMDPIDDVYFLQGDFREQEVADKLAEILNGDKVDVVLS 129

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R++ L E A  F LE L   G F+ K FQG   +  +  LK+ F+
Sbjct: 130 DMAPNLSGIAAADAARSLLLNELALEFCLEHLAPNGVFVTKAFQGSGYSQYVESLKRVFK 189

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           KV   KP ASR  S E++L+++G +
Sbjct: 190 KVAAKKPEASRDTSAEVYLVSRGLK 214


>gi|121998550|ref|YP_001003337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhodospira halophila
           SL1]
 gi|143460291|sp|A1WXX3|RLME_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|121589955|gb|ABM62535.1| 23S rRNA Um-2552 2'-O-methyltransferase [Halorhodospira halophila
           SL1]
          Length = 212

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 128/212 (60%), Gaps = 6/212 (2%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           T + + R C   +R   +RH +DP+V+RA+ EGWR+R+A KL  I+++  + +  + +VD
Sbjct: 3   TCRRRRRGCNSQAR--RSRHESDPFVRRARAEGWRSRAALKLEAIDQRDGLFRPGQVVVD 60

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQ+ A   GS     RVVAID+L+M+P+ GV F   DF   +    + +A+ 
Sbjct: 61  LGAAPGGWSQLVAPKVGSAG---RVVAIDLLEMDPLPGVTFLHADFSTDEGLRAVERALE 117

Query: 134 GNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G P D+VLSDMA    GH  +D    M L E A  FA + L+  GDFLVK F G   +  
Sbjct: 118 GRPVDIVLSDMAPNLTGHNAVDQPAAMGLAELAADFAGQFLHKNGDFLVKVFHGEGFDAF 177

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
              L + F +V+  KP ASR+ S E++LLA+G
Sbjct: 178 RGDLTRRFSRVLSRKPDASRSGSREVYLLARG 209


>gi|70734330|ref|YP_257970.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           fluorescens Pf-5]
 gi|83305665|sp|Q4KIG3|RLME_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|68348629|gb|AAY96235.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           fluorescens Pf-5]
          Length = 209

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H NDP+V+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +      I +A+G +  DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSEVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   ++    +++ F+KV
Sbjct: 123 APNMSGLAAVDMPRAMFLCELALDLAGRVLRPGGDFLIKIFQGEGFDEYHKSVRQMFEKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL +GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLGRGFR 205


>gi|261380964|ref|ZP_05985537.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
           NJ9703]
 gi|284796223|gb|EFC51570.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
           NJ9703]
          Length = 206

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+ DM
Sbjct: 67  AAKLVGKTG---AVFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    +++ F  V
Sbjct: 124 APNMSGNAVTDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYTAAMREIFASV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPDASRNRSSEIYLLGKNKR 206


>gi|312963090|ref|ZP_07777575.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
           fluorescens WH6]
 gi|311282601|gb|EFQ61197.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
           fluorescens WH6]
          Length = 216

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WL  H NDPYV++AQ +G+R+R++YKLL++ +K ++ +    ++DLG++PG WSQV
Sbjct: 6   TSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A+R+ G      R++A DIL+M+ I  V F   DF        I +A+G +  DLV+SDM
Sbjct: 66  ASRLIGGQG---RLIASDILEMDSIPDVTFVHGDFTQDAVLAQILEAVGNSQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFLVK FQG   ++    ++K F KV
Sbjct: 123 APNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHKNIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPDSSRDRSREQYLLARGFR 205


>gi|88606902|ref|YP_505099.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
           phagocytophilum HZ]
 gi|123495326|sp|Q2GKK2|RLME_ANAPZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88597965|gb|ABD43435.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
           phagocytophilum HZ]
          Length = 247

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 2/203 (0%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS +W+ R +ND YV  A+ EG+R+RSAYKL++IN+K +ILQ  R ++DLGSSPG W+QV
Sbjct: 45  SSTNWIRRQVNDQYVSLAKKEGYRSRSAYKLIEINDKFKILQRGRFVLDLGSSPGGWAQV 104

Query: 85  AARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
           A++ T   ++    VVA+DI  M+ I  V F + D +D D      +  G   D+VLSDM
Sbjct: 105 ASKNTAIIDSTEPTVVAVDIQSMKDIHNVSFVQCD-IDSDHDLLNEKLSGRKFDVVLSDM 163

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A  + GHR++DH   ++LCE A   ALE LN  G F+ K   G    +    +  HF  V
Sbjct: 164 APKSCGHRQVDHANIINLCELARDIALEYLNPNGSFVTKLLHGEYEQEFRRSIMTHFGVV 223

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
            + KP +SR +S E++L+A  F+
Sbjct: 224 SYFKPKSSRKDSSEIYLVALKFK 246


>gi|225629924|ref|YP_002726715.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia sp. wRi]
 gi|225591905|gb|ACN94924.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia sp. wRi]
          Length = 192

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 127/193 (65%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG W QVA++  G+N 
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVASQ-KGAN- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
               VVA+D+  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDVKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|307546735|ref|YP_003899214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas elongata DSM
           2581]
 gi|307218759|emb|CBV44029.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas elongata DSM
           2581]
          Length = 225

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 4/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+  H +D YVQ++  +G+R+R++YKLL ++EK ++L+    ++DLG++PG WSQVAA  
Sbjct: 29  WMKEHFDDRYVQQSWQDGYRSRASYKLLALDEKDRLLRPGMTVIDLGAAPGGWSQVAAEK 88

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G   +  RV+A DIL+M+ + GV F + DF +    E I   IG  P DLV+SDMA   
Sbjct: 89  VG---DEGRVIASDILEMDALAGVDFVQGDFTEDSVLEEILARIGDRPVDLVMSDMAPNM 145

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID  + M L E A   A + L+ GG FL K FQG   +  L  L+  F++V+  K
Sbjct: 146 SGMAAIDQPQAMYLVELALDLARQTLSPGGVFLAKVFQGEGFDAYLKELRAGFKRVVTRK 205

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASRA S E++LLA+GFR
Sbjct: 206 PEASRARSREVYLLAEGFR 224


>gi|121607215|ref|YP_995022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
           eiseniae EF01-2]
 gi|143462104|sp|A1WEE7|RLME_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|121551855|gb|ABM56004.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
           eiseniae EF01-2]
          Length = 242

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 128/213 (60%), Gaps = 5/213 (2%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK RS +  ++ WL++H+NDPYVQRA+ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KVKTRS-KKVNKAWLDQHVNDPYVQRARKEGYRARAAYKLREIDEQLGLIRPGYTVVDLG 60

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG+WSQ   R     A    ++A+DIL MEP+ GV     DF   D  + + QA+ G 
Sbjct: 61  ATPGAWSQYLRR---RMAAEGAIIALDILPMEPLEGVTCLHGDFRAPDVQQRLEQALAGR 117

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G    D  R   L E A  F+   L   G  LVK F G   +D+  
Sbjct: 118 VVDVVVSDMAPNLSGIACADAARMADLVELAVAFSCRHLKPDGALLVKLFHGSGYSDLAA 177

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L K+ F +V+ +KP ASR +S E FLL +G +K
Sbjct: 178 LFKQTFLRVVPLKPKASRDKSSETFLLGRGLKK 210


>gi|221066109|ref|ZP_03542214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           KF-1]
 gi|264679344|ref|YP_003279251.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           CNB-2]
 gi|299532303|ref|ZP_07045696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           S44]
 gi|220711132|gb|EED66500.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           KF-1]
 gi|262209857|gb|ACY33955.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           CNB-2]
 gi|298719711|gb|EFI60675.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           S44]
          Length = 220

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 134/218 (61%), Gaps = 7/218 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K +S +  +++WL+ HINDPYV+ AQ +G+RAR+AYKL +I+E  +++Q    +VDLG
Sbjct: 2   KTKTKSKK-VNKNWLHDHINDPYVKAAQKDGYRARAAYKLKEIDESLKLIQPGHTVVDLG 60

Query: 76  SSPGSWSQ-VAARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
            +PG+WSQ V  R++ S A     N R++++D+L MEPI GV + + DF +      + +
Sbjct: 61  CAPGAWSQYVRRRLSPSGAAVGELNGRIISLDLLPMEPIEGVHYIQGDFREEAVLAQLEE 120

Query: 131 AIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+GG   D+V+SDMA    GH   D  R   L E A  FA+  +   G  +VK F G   
Sbjct: 121 AMGGGKADVVVSDMAPNLSGHGATDGARVAVLIEMAVDFAINNMKPEGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           N+++ L K+ F+ V  +KP ASR  S E+FL+  G ++
Sbjct: 181 NELVDLFKQTFKVVKPIKPKASRDRSAEIFLVGMGLKQ 218


>gi|118594568|ref|ZP_01551915.1| cell division protein FtsJ [Methylophilales bacterium HTCC2181]
 gi|118440346|gb|EAV46973.1| cell division protein FtsJ [Methylophilales bacterium HTCC2181]
          Length = 205

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 124/200 (62%), Gaps = 4/200 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+N H++DPYV +A++ G+R+R+A+KLL+ NEK   L     +VDLGS+PGSWSQV
Sbjct: 6   TSKSWMNEHVSDPYVHKAKIAGYRSRAAFKLLEANEKFNFLTKKMNVVDLGSAPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +++TG N N   + A+D+L+M PI  V+F K DF + +  + + + +G    DLV+SDM
Sbjct: 66  ISQMTGCNGN---IFALDLLEMVPIKNVEFLKGDFREQEMLDSLEKKLGKTSLDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +  D    + L E A  F+ + L   G FLVK+F G   +  +   +KHF+KV
Sbjct: 123 APNISGIKTSDQAGIIHLNELALQFSTDWLKPNGCFLVKSFVGAEFDGFVAETRKHFEKV 182

Query: 204 IHVKPVASRAESVEMFLLAK 223
              KP +SR  S E+F+  +
Sbjct: 183 TTFKPASSRDRSSEIFVFGR 202


>gi|330888666|gb|EGH21327.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 216

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGCDVYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|237798555|ref|ZP_04587016.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|330958057|gb|EGH58317.1| FtsJ cell division protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
 gi|331021408|gb|EGI01465.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 216

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK +I++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|158514184|sp|A4VNP3|RLME_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|327481681|gb|AEA84991.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 4166]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SSR WL+ H+NDP+V+RAQ +G R+RS+YKL+++NEK ++++    ++DLGS+PG WSQV
Sbjct: 6   SSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A  I G      RV+A DIL M  +  V F + DF +   ++ I   + G  PDL++SD+
Sbjct: 66  AGGIVGEKG---RVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDMLDGRQPDLIVSDI 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   +M L E       ++L  GG+++VK FQG  +++ L  ++  F+KV
Sbjct: 123 APNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLKDVRSSFEKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++L+AKGF+
Sbjct: 183 VIRKPEASRPRSREVYLVAKGFK 205


>gi|146283283|ref|YP_001173436.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
 gi|145571488|gb|ABP80594.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
          Length = 211

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SSR WL+ H+NDP+V+RAQ +G R+RS+YKL+++NEK ++++    ++DLGS+PG WSQV
Sbjct: 11  SSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQV 70

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A  I G      RV+A DIL M  +  V F + DF +   ++ I   + G  PDL++SD+
Sbjct: 71  AGGIVGEKG---RVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDMLDGRQPDLIVSDI 127

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   +M L E       ++L  GG+++VK FQG  +++ L  ++  F+KV
Sbjct: 128 APNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLKDVRSSFEKV 187

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++L+AKGF+
Sbjct: 188 VIRKPEASRPRSREVYLVAKGFK 210


>gi|225075313|ref|ZP_03718512.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
           NRL30031/H210]
 gi|224953488|gb|EEG34697.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
           NRL30031/H210]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+ DM
Sbjct: 67  AAKLVGKTG---AVFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    + + F  V
Sbjct: 124 APNMSGNAVTDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYTATMHEIFASV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPDASRNRSSEIYLLGKNKR 206


>gi|28871632|ref|NP_794251.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213966655|ref|ZP_03394806.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
 gi|301383165|ref|ZP_07231583.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063400|ref|ZP_07254941.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato K40]
 gi|302133773|ref|ZP_07259763.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|81729678|sp|Q87WP7|RLME_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|28854884|gb|AAO57946.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213928505|gb|EEB62049.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
 gi|330877241|gb|EGH11390.1| FtsJ cell division protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016640|gb|EGH96696.1| FtsJ cell division protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 216

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK +I++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|88705677|ref|ZP_01103387.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
           litoralis KT71]
 gi|88700190|gb|EAQ97299.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
           litoralis KT71]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DPYVQ+AQ +G+R+R+ YKLL++ E+  I++    ++DLGS+PG WSQV
Sbjct: 7   SSKAWLREHRDDPYVQQAQRDGYRSRACYKLLELQERDNIIRPGMTVLDLGSAPGGWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           AA + G      +V+A DIL M+PI GV F + DF +   +E I   +G  + DLV+SDM
Sbjct: 67  AAELVGKRG---QVIASDILPMDPIDGVNFVQGDFTEDQVFEQILAEMGDKSADLVISDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  +++ L E A   A  +L  GG F+ K FQG   +++    ++ F KV
Sbjct: 124 APNMSGVSAVDQPKSIYLVELALDMATRVLVPGGAFITKVFQGEGFDELFRATREQFDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++L+A+G R
Sbjct: 184 LTRKPSASRPRSREVYLVARGRR 206


>gi|21231165|ref|NP_637082.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768827|ref|YP_243589.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112804|gb|AAM41006.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574159|gb|AAY49569.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 212

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DP+V++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 9   SSQRWLKEHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQ 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G++    RVVA+DIL+M P+ GV+F   DF +          +G  P DLVLSDM
Sbjct: 69  VRKSMGASG---RVVALDILEMPPLAGVEFLHGDFREQAVLSEFEAMLGDVPVDLVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L +GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 126 APNKSGMDAVDQPRMMHLAELAMEFADTHLKVGGAFLIKLFQGVGSDDYIRELRRRYEKV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E+++L +G R
Sbjct: 186 TIRKPAASRKRSAEVYVLGQGKR 208


>gi|188991942|ref|YP_001903952.1| Cell division protein FtsJ [Xanthomonas campestris pv. campestris
           str. B100]
 gi|83305668|sp|Q4UTQ4|RLME_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305669|sp|Q8P9Y1|RLME_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705321|sp|B0RTZ3|RLME_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|167733702|emb|CAP51907.1| Cell division protein FtsJ [Xanthomonas campestris pv. campestris]
          Length = 210

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DP+V++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQ 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G++    RVVA+DIL+M P+ GV+F   DF +          +G  P DLVLSDM
Sbjct: 67  VRKSMGASG---RVVALDILEMPPLAGVEFLHGDFREQAVLSEFEAMLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L +GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADTHLKVGGAFLIKLFQGVGSDDYIRELRRRYEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E+++L +G R
Sbjct: 184 TIRKPAASRKRSAEVYVLGQGKR 206


>gi|255020638|ref|ZP_05292700.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
 gi|254969874|gb|EET27374.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
          Length = 207

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DP+VQRA  EG+R+R++YKLL+I EK  +L+  +R++DLG++PG W+QV
Sbjct: 6   SSKQWLREHFQDPFVQRAAREGYRSRASYKLLEIQEKDGLLRRGQRVLDLGAAPGGWTQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA I GS     R+VA+D L M+P+ G    + D  D       R A     DL+LSDMA
Sbjct: 66  AAAIVGSEG---RIVAVDRLAMDPVPGALVIQGDIYDEAVIAQCRAAFPEGVDLILSDMA 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G    D  R ++LCE A   A E L  GG  L+K F G    ++   L+  F++++
Sbjct: 123 PNLSGIASADQARAVALCELALDLAREWLVPGGKLLMKVFMGAGAQELRRELQGSFRRIV 182

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASRA S E + LA  +R
Sbjct: 183 VRKPEASRARSAEQYWLALDYR 204


>gi|330721347|gb|EGG99422.1| Cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [gamma proteobacterium IMCC2047]
          Length = 207

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+ H ND YV+++Q +G+R+R++YKLL++ +K ++ +    ++DLGS+PG WSQV
Sbjct: 6   SSGRWLDEHFNDQYVKKSQQDGYRSRASYKLLELQDKDKLFKPGMSVLDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A  + G   +  RVVA DIL MEPI G  F + DF +++ ++ I   +G +  DLV+SDM
Sbjct: 66  AVELVG---DKGRVVASDILPMEPIAGADFVEGDFTEMEVYDQILNVLGEDKVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  + M L E A   A ++L  GG  + K F G   +++L   +  F+KV
Sbjct: 123 APNMSGVSAVDQPKAMYLVELAVDMADQILKPGGALIAKVFHGDGFDELLKTTRSKFKKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASRA S E +L+AK F+
Sbjct: 183 QIRKPDASRARSKEQYLVAKDFK 205


>gi|330963967|gb|EGH64227.1| FtsJ cell division protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 216

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKVIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|229592644|ref|YP_002874763.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|259494568|sp|C3K267|RLME_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|229364510|emb|CAY52363.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 216

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WL  H NDPYV++AQ +G+R+R++YKLL+I +K ++++    ++DLG++PG WSQV
Sbjct: 6   TSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F   DF        I +A+G +  DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFVHGDFTQDTVLAQILEAVGNSQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFLVK FQG   ++    ++K F KV
Sbjct: 123 APNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHKNIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LL +GFR
Sbjct: 183 QTRKPDSSRDRSREQYLLCRGFR 205


>gi|71734802|ref|YP_276319.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257482269|ref|ZP_05636310.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289624594|ref|ZP_06457548.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646953|ref|ZP_06478296.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|83305664|sp|Q48E69|RLME_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71555355|gb|AAZ34566.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322536|gb|EFW78629.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329995|gb|EFW85982.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868238|gb|EGH02947.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330987047|gb|EGH85150.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 216

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|78485156|ref|YP_391081.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomicrospira crunogena
           XCL-2]
 gi|123555692|sp|Q31HG6|RLME_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|78363442|gb|ABB41407.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomicrospira crunogena
           XCL-2]
          Length = 206

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV +A+ +GWR+R+ YKL +I+EK Q+      ++DLG++PG WSQ 
Sbjct: 6   SSAGWLKEHFDDYYVNKAKQDGWRSRAIYKLQEIDEKDQLFSKGMTVIDLGAAPGGWSQW 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
               TG   +  RV A+DIL +EP  GV F + DF + D ++ +  A+ G   DLV+SDM
Sbjct: 66  TTHQTG---DEGRVFALDILPVEPFAGVTFIQGDFQEDDVYQSLLDALDGREVDLVMSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++ +D  R M L E     A ++L   GD L+K FQG   + +L  L++ +QKV
Sbjct: 123 APNMTGNKGVDIPRAMYLVELCVDLADQVLKPNGDLLMKVFQGEGYDQLLKSLREKYQKV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
           +  KP ASR  S E++LLA+G
Sbjct: 183 LTRKPKASRPRSKEIYLLARG 203


>gi|298488448|ref|ZP_07006479.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157073|gb|EFH98162.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 216

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|89095222|ref|ZP_01168145.1| cell division protein FtsJ [Oceanospirillum sp. MED92]
 gi|89080519|gb|EAR59768.1| cell division protein FtsJ [Oceanospirillum sp. MED92]
          Length = 206

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV++++  G+R+R+++KL++++EK ++ Q    +VDLG++PG WSQ+
Sbjct: 6   SSERWLKEHFDDHYVKKSKELGYRSRASFKLIELDEKDKLFQPGMTVVDLGAAPGGWSQI 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA   G   ++ RVVA DIL M+ + GV+F + DF + +    I +A+G  P DLV+SDM
Sbjct: 66  AAERVG---DHGRVVASDILPMDSMAGVEFVQGDFTEEEVLNRILKALGDEPADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D    M L E A   A E+L  GG+F+ K FQG   +  L  ++  F KV
Sbjct: 123 APNMSGMSAVDQPAAMYLVELALDMAREVLKPGGNFVAKVFQGEGFDQYLKDMRTSFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP +SRA S E++LL KGF+
Sbjct: 183 VTRKPDSSRARSREVYLLGKGFK 205


>gi|66047415|ref|YP_237256.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae B728a]
 gi|289676016|ref|ZP_06496906.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae FF5]
 gi|302185424|ref|ZP_07262097.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae 642]
 gi|75500697|sp|Q4ZNQ4|RLME_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|63258122|gb|AAY39218.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae B728a]
 gi|330895314|gb|EGH27652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330969643|gb|EGH69709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 216

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|187477433|ref|YP_785457.1| ribosomal RNA large subunit methyltransferase j [Bordetella avium
           197N]
 gi|123513953|sp|Q2KVR5|RLME_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115422019|emb|CAJ48541.1| ribosomal RNA large subunit methyltransferase j [Bordetella avium
           197N]
          Length = 219

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 129/204 (63%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I E  ++L+    +VDLGS+PGSWSQV 
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLIEILEVEKLLKKGDVVVDLGSAPGSWSQVV 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G     + R++A+D+L MEPI GV+FF+ DF D +    + + +G +  DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPIAGVEFFQGDFRDDEVLHELERRVGNHAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +C+ A  F+   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGVADSARIQHVCDLALEFSCAHLKPNGVLIVKAFHGSGFSQIVQSFKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|319638318|ref|ZP_07993081.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           C102]
 gi|317400591|gb|EFV81249.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           C102]
          Length = 206

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+ DM
Sbjct: 67  AAKLVGKTG---AVFALDILPMDAIDGVSFIQGDFREDAVLEQFEALLDNRPLDLVICDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    + + F  V
Sbjct: 124 APNMSGNAVTDQARSFYLCELALDFASQHLKPGGSFLVKVFQGAGYQEYTAAMSEIFASV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL K  R
Sbjct: 184 QTRKPDASRNRSSEIYLLGKNKR 206


>gi|330875231|gb|EGH09380.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 216

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 4/202 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV 
Sbjct: 7   SHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVT 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
           +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDMA
Sbjct: 67  SRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVISDMA 123

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV 
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQ 183

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S E +LLA+GFR
Sbjct: 184 MRKPSSSRDRSREQYLLARGFR 205


>gi|160900358|ref|YP_001565940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
           SPH-1]
 gi|226703294|sp|A9BML0|RLME_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160365942|gb|ABX37555.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
           SPH-1]
          Length = 217

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 6/214 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ WLN H+NDPYV+ AQ +G+RAR+AYKL +I+E+ ++++    +VDLGS+P
Sbjct: 4   NTKSKKVNKAWLNSHVNDPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTP 63

Query: 79  GSWSQVAARI-----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQ   R          A N R++++D+L MEPI GV+F   DF +      +++A+G
Sbjct: 64  GAWSQYVRRCLSPEGAAVGALNGRIISLDLLPMEPIEGVQFILGDFREEPVLAQLQEALG 123

Query: 134 GN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   D+V+SDMA    G+   D  R   L E A  F++  +   G  +VK F GG  +D+
Sbjct: 124 GGKADVVVSDMAPNLSGNGTTDAARIALLVELAVDFSIHHMKPEGALVVKLFHGGAYDDL 183

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + L ++ F+ V  +KP +SR +S E FL+  G +
Sbjct: 184 VALFRQTFKVVKPIKPKSSRDKSSETFLVGMGLK 217


>gi|71083352|ref|YP_266071.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762218|ref|ZP_01264183.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|83305663|sp|Q4FMX1|RLME_PELUB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71062465|gb|AAZ21468.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718020|gb|EAS84670.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 203

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 4/201 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S++W+N+   D YV+++Q++G+RARSAYKL++I+EK +I ++   ++DLG+SPGSWSQ  
Sbjct: 7   SKNWINKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYI 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           +R   S     R+V+ID+  ME I      K DF DL+S E I+       D+V+SDMA 
Sbjct: 67  SRTVKSG----RLVSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFKSKVDVVVSDMAV 122

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G + ID + T  L   A  F+ EML   G F+ K F G + N+I+ L KK F++V  
Sbjct: 123 NTTGIKDIDAIYTGELAMEAMNFSKEMLVKEGRFVSKIFLGSSFNEIVALGKKLFKEVKV 182

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR ES E F++ K  R
Sbjct: 183 FKPKSSRKESKESFIICKILR 203


>gi|325924512|ref|ZP_08186031.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325545007|gb|EGD16342.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 210

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+ N  +VDLG++PG W Q 
Sbjct: 7   SSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPNMVVVDLGAAPGGWCQQ 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             R  G   +  RV+A+DIL+M P+ GV+F   DF +          +G  P DLVLSDM
Sbjct: 67  VRRSLG---DTGRVLALDILEMPPLAGVEFLHGDFREQAVLSEFEAMLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADTHLKTGGAFLIKLFQGVGSDDYIRELRRRYEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 TIRKPAASRKRSPEVYALGQGKR 206


>gi|218461485|ref|ZP_03501576.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli Kim 5]
          Length = 126

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 95/123 (77%), Gaps = 2/123 (1%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  RRI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKYHILRGARRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLD 121
           FLD
Sbjct: 121 FLD 123


>gi|53803869|ref|YP_114286.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
           capsulatus str. Bath]
 gi|81681781|sp|Q607B2|RLME_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|53757630|gb|AAU91921.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
           capsulatus str. Bath]
          Length = 210

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV+ AQ +G+R+R+ +KL++++E  ++      ++DLG++PG WSQ 
Sbjct: 7   SSGRWLAEHFSDEYVRLAQEKGYRSRAVFKLMELDEHDRLFAPGTTVIDLGAAPGGWSQY 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AAR  G++    RV+A+D+L MEP+ GV   + DFLD   +  + +AIGG   D+VLSDM
Sbjct: 67  AARRVGASG---RVLALDMLPMEPLPGVTVVQGDFLDDAVFHAMLEAIGGRRVDVVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+R +D  R+M L E A   A  +L   G F+VK FQG    + +   +K F  V
Sbjct: 124 APNMSGNRNVDQPRSMYLAELAFDLAERVLGPKGSFVVKLFQGEGFQEYVARARKAFGSV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASRA S E++L+ KG+R
Sbjct: 184 GMRKPKASRARSAEIYLVGKGYR 206


>gi|296193362|ref|XP_002744485.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
           [Callithrix jacchus]
          Length = 246

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 133/216 (61%), Gaps = 9/216 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G+
Sbjct: 24  CKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPGLRVLDCGA 81

Query: 77  SPGSWSQVAAR---ITGSNANNTR--VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQ 130
           +PG+WSQVA R    TG++ ++    V+ +D+L + P+ G  F    D  D  + + I +
Sbjct: 82  APGAWSQVAVRKVNATGTDLSSPVGFVLGVDLLHILPLEGATFLCPADVTDPRTSQRILE 141

Query: 131 AI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            + GG  D++LSDMA    G R +DH R +SLC +      ++L+ GG FL KT+ G  +
Sbjct: 142 LLPGGRADVILSDMAPNATGVRDLDHDRLISLCLSLLGMTPDILHPGGTFLCKTWAGSQS 201

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +   L + FQ V  +KP ASR ES EM+ LA  +
Sbjct: 202 RQLQSRLTEEFQSVRIIKPEASRKESSEMYFLATQY 237


>gi|149755358|ref|XP_001492181.1| PREDICTED: similar to FtsJ homolog 2 [Equus caballus]
          Length = 264

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 128/211 (60%), Gaps = 7/211 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G++PG+WSQ
Sbjct: 47  GAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQ 106

Query: 84  VA-----ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNP 136
           VA     A  T   A    V+ +D+L + P+ G  F    D  D  +++ IR+ + GG  
Sbjct: 107 VAVQRVNAAGTDPGAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFQRIRELLPGGRA 166

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D++LSDMA    G R +DH R +SLC +    A + L  GG FL KT+ G  ++ +   L
Sbjct: 167 DVILSDMAPNATGIRGLDHDRLISLCLSLLDLAPDTLCPGGTFLCKTWAGSQSHRLQKRL 226

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            + FQ    VKP ASR ES E++ LA  +R+
Sbjct: 227 TEEFQNTKTVKPEASRKESSEVYFLATQYRR 257


>gi|257095284|ref|YP_003168925.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047808|gb|ACV36996.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 206

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/210 (44%), Positives = 124/210 (59%), Gaps = 8/210 (3%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           NRS   SS  WL  H++D YVQRA+ EG+R+R+AYKL+ I++   +L+S   IVDLG+SP
Sbjct: 2   NRSA--SSNRWLREHVSDAYVQRARAEGYRSRAAYKLMAIDDTDHLLRSGDVIVDLGASP 59

Query: 79  GSWSQVAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQVAA R+ G      RV+A+D+L+MEP+  V F + DF + D    +   + G   
Sbjct: 60  GGWSQVAARRLQGGG----RVIAVDLLEMEPLRDVTFLQGDFREPDVIGRLETILAGKKV 115

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            LVLSDM+    G    D  R M L E    FA + L   G FLVK FQG   +D L  +
Sbjct: 116 GLVLSDMSPNISGIAVCDQARGMHLAELGLEFACKWLKPEGAFLVKVFQGHGFDDFLAAM 175

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K F+ V   KP ASR  S E++LL K  +
Sbjct: 176 RKAFKSVASRKPDASRDRSPEIYLLGKTLK 205


>gi|190571015|ref|YP_001975373.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019536|ref|ZP_03335342.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190357287|emb|CAQ54715.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212994958|gb|EEB55600.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 192

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 124/193 (64%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++I++K ++LQ  ++I+DLG+ PG WSQVA++   S  
Sbjct: 1   MNDQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASKKGAS-- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
               V+A+DI  +  I GV+  + D +     E +R+    +  D++LSDMA  + G + 
Sbjct: 59  ----VIAVDIKPINAISGVECIQCDIIS--ELEILREKFKDHKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   LN  G F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLNHDGKFVVKIFQGESDKDFCNELKKMFKTVRYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|126642713|ref|YP_001085697.1| cell division protein [Acinetobacter baumannii ATCC 17978]
          Length = 199

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +VDLG++PGSWSQ+A ++ 
Sbjct: 1   MREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLV 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
           GS      V+A DIL M+ +  V F + DF +   +E +   + G   D+V+SDMA  T 
Sbjct: 61  GSKG---LVIASDILPMDALPDVTFLQGDFREEAVFEKLLNILNGRQVDIVISDMAPNTS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++    +   F  +   KP
Sbjct: 118 GNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFDVLKTAKP 177

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASRA S E+FL+ +G +K
Sbjct: 178 AASRARSKEVFLVGQGRKK 196


>gi|319763183|ref|YP_004127120.1| ribosomal RNA methyltransferase rrmj/ftsj [Alicycliphilus
           denitrificans BC]
 gi|330825246|ref|YP_004388549.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
           denitrificans K601]
 gi|317117744|gb|ADV00233.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
           denitrificans BC]
 gi|329310618|gb|AEB85033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
           denitrificans K601]
          Length = 220

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 131/217 (60%), Gaps = 7/217 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK +S +  ++ WLN H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KVKTKSKK-VNKAWLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQFGLIKPGHVVVDLG 60

Query: 76  SSPGSWSQ-VAARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           SSPG+WSQ V  R++   A     +  ++++DIL MEPI GV F + DF D +    ++Q
Sbjct: 61  SSPGAWSQYVRRRLSPGGAAMGQLDGTIISLDILPMEPIEGVTFLQGDFRDEEVLARLQQ 120

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G P D+V+SDMA    G   +D +R   L E A  FA+  L   G  +VK F G   
Sbjct: 121 AVQGRPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPDGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++ L K  F+ V  VKP ASR +S E FL+  G +
Sbjct: 181 TQLVQLFKDTFRVVKPVKPKASRDKSSETFLVGIGLK 217


>gi|90022366|ref|YP_528193.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Saccharophagus degradans
           2-40]
 gi|123276498|sp|Q21H48|RLME_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|89951966|gb|ABD81981.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Saccharophagus degradans
           2-40]
          Length = 206

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H ND YV+ +Q +G+R+R++YKL+++N+K ++++S + +VDLG++PG WSQV
Sbjct: 6   SSGRWLQEHFNDQYVKDSQKDGYRSRASYKLIELNDKDKLIKSGQTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDM 143
           AA+I G   +  RVVA DIL M+ + GV F + DF  +    + +        DLV+SDM
Sbjct: 66  AAQIVG---DGGRVVASDILPMDSLAGVDFVQGDFTEEAVLEQLLELLGEAKADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  ++M L E A   A   L IGG F  K FQG   ++++   ++ FQKV
Sbjct: 123 APNMSGIADVDQPKSMYLVELALDMAKTTLKIGGSFACKVFQGEGFDELVLACRECFQKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++++AKG++
Sbjct: 183 LVRKPSASRPRSREVYIVAKGYK 205


>gi|21242480|ref|NP_642062.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|78047320|ref|YP_363495.1| cell division protein FtsJ [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|294626637|ref|ZP_06705234.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665640|ref|ZP_06730917.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|325928791|ref|ZP_08189960.1| 23S rRNA Um-2552 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
 gi|81803099|sp|Q8PLQ8|RLME_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123585340|sp|Q3BUR8|RLME_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|21107928|gb|AAM36598.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|78035750|emb|CAJ23441.1| cell division protein FtsJ [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|292599057|gb|EFF43197.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604586|gb|EFF47960.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|325540872|gb|EGD12445.1| 23S rRNA Um-2552 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
          Length = 210

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQ- 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLVLSDM
Sbjct: 66  --QVRKSMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 TIRKPAASRKRSPEVYALGQGKR 206


>gi|94499454|ref|ZP_01305991.1| 23S rRNA methylase [Oceanobacter sp. RED65]
 gi|94428208|gb|EAT13181.1| 23S rRNA methylase [Oceanobacter sp. RED65]
          Length = 206

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WLN H+ND YV+RAQ +G+R+R++YKLL++ EK ++++     +DLGS+PG WSQV
Sbjct: 6   SSKQWLNEHVNDVYVKRAQNDGYRSRASYKLLELIEKDKLVRPGMVTMDLGSAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            A I G   +  RV+A DIL M+ + GV F + DF + + ++ I   +   P DLV+SDM
Sbjct: 66  LAPIVG---DKGRVIASDILPMDAMAGVDFIQGDFTEDEVFDEIMAKLDNAPVDLVVSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D   +M L E A   A ++L   G F+ K FQG    + L  ++  F KV
Sbjct: 123 APNISGVNAADQASSMYLVELALDMARQVLKQNGSFVAKVFQGAGYEEYLKDVRSSFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++++AKGF+
Sbjct: 183 LIRKPDASRPRSREVYVVAKGFK 205


>gi|120611284|ref|YP_970962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax citrulli
           AAC00-1]
 gi|143459163|sp|A1TQF0|RLME_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120589748|gb|ABM33188.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax citrulli
           AAC00-1]
          Length = 218

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 6/215 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E   +++  + +VDLGS+P
Sbjct: 4   NTKSKKVNKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAP 63

Query: 79  GSWSQVAAR---ITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQ   R     G+ A   N  ++A+DIL MEPI GV F + DF + D    +++A+ 
Sbjct: 64  GAWSQYLRRRMAPAGAAAGQLNGTLIALDILPMEPIEGVTFLQGDFREEDVLARLQEAVQ 123

Query: 134 GNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
             P D+V+SDMA    G   +D +R   L E A  FA + L   G  +VK F G     +
Sbjct: 124 ARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAQQHLKPDGALVVKLFHGSGYAQL 183

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + L K+HF+ V  +KP ASR +S E FL+  G RK
Sbjct: 184 VQLFKEHFRTVKPMKPKASRDKSSETFLVGMGLRK 218


>gi|253997068|ref|YP_003049132.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
           JLW8]
 gi|253983747|gb|ACT48605.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
           JLW8]
          Length = 206

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+NDPYV+ AQ +G+RAR+AYKL++I++K +I++    +VDLGS+PGSWSQV
Sbjct: 6   TSKAWMQEHLNDPYVKLAQKDGYRARAAYKLMEIDDKDKIIKPGMTVVDLGSAPGSWSQV 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSD 142
              R+ G      +V+A+DIL+M PI GV F + DF +    + + Q +     DLV++D
Sbjct: 66  TVQRLKGQG----KVIALDILEMTPISGVTFIQGDFREDAVLKLLEQTLNNLQVDLVIAD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G + +D      L E A  F+ + L   G+FLVK F G    +IL  +++ F K
Sbjct: 122 MAPNISGVKDVDQAGAAYLTELALEFSKDWLKPNGNFLVKVFIGAGFEEILQSMRQMFTK 181

Query: 203 VIHVKPVASRAESVEMFLLAKG 224
           V+  KP ASR  S E++LL  G
Sbjct: 182 VVTRKPKASRDRSSEVYLLGIG 203


>gi|311108149|ref|YP_003981002.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762838|gb|ADP18287.1| FtsJ-like methyltransferase family protein [Achromobacter
           xylosoxidans A8]
          Length = 210

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 128/204 (62%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLIEILDTEKLMRRGDLVVDLGSAPGSWSQVA 66

Query: 86  -ARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
             R+ G     + R++A+D+L MEP+ GV+F + DF D +  + +   +G    DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRDDEVLKQLEDMVGSRAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  F+   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGIADSARIQHVCELAMEFSCAHLKPNGVLIVKAFHGSGFSQIVESFKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|289662669|ref|ZP_06484250.1| cell division protein FtsJ [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669632|ref|ZP_06490707.1| cell division protein FtsJ [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 210

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQ- 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLVLSDM
Sbjct: 66  --QVRKSMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEALLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 TIRKPAASRKRSPEVYALGQGKR 206


>gi|73541859|ref|YP_296379.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia eutropha
           JMP134]
 gi|83305667|sp|Q46Z98|RLME_CUPPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|72119272|gb|AAZ61535.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia eutropha
           JMP134]
          Length = 225

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 124/219 (56%), Gaps = 13/219 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            K +S    ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ +++Q  + IVDLG+
Sbjct: 2   AKGKSKNKFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIQPGQVIVDLGA 61

Query: 77  SPGSWSQVA-------ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +PGSWSQ A        R TG   +   VVAIDIL MEP+  V F + DF + D +  + 
Sbjct: 62  APGSWSQYARNKLAASPRATGGKPDGA-VVAIDILPMEPVADVTFIQGDFREEDVFRQLE 120

Query: 130 QAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           + +     G   DLVLSDMA    G    D  R   LC+ A  FA   L   G  LVK F
Sbjct: 121 EVVMAASGGAKIDLVLSDMAPNLSGVASADSARIEYLCDLALDFAQTHLKPDGALLVKCF 180

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            G   + I+   K+ F+ V   KP ASR +S E F+L +
Sbjct: 181 HGSGYSQIVEKFKRQFKVVAPRKPKASRDKSSETFILGR 219


>gi|237748683|ref|ZP_04579163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes OXCC13]
 gi|229380045|gb|EEO30136.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes OXCC13]
          Length = 215

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           ++ W+  H++DP+V+ AQ EG+RAR+AYKL++I+E   +++  + IVDLGS+PGSWSQ  
Sbjct: 7   NKSWMKNHLDDPFVKMAQKEGYRARAAYKLIEIDEDAHLIKPGQVIVDLGSTPGSWSQYV 66

Query: 86  AR---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLS 141
            R    +G+N  N  V+ +D+L MEPI GV FF+ DF +    + +   + G   DLVLS
Sbjct: 67  VRKLGSSGANQLNGTVIGLDLLPMEPIEGVHFFQGDFREESVLQELENLLQGRKADLVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   L E A  FA   L   G  LVK F G + NDIL   ++ F 
Sbjct: 127 DMAPNLSGIASADAARVEYLMELALDFAQAHLKPSGALLVKCFNGSSYNDILKNFRETFV 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP ASR  S E+FLL +  R
Sbjct: 187 TVTPKKPKASRDYSSEIFLLGRQLR 211


>gi|319786408|ref|YP_004145883.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464920|gb|ADV26652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 227

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H +DPYV++AQ EG R+R+AYKL ++ E+ ++L+    +VDLG++PG WSQ   + 
Sbjct: 28  WLREHFSDPYVKKAQAEGLRSRAAYKLEELLERDRLLKPGMAVVDLGAAPGGWSQYVRQA 87

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G   ++ RV+A+DIL+M P+ GV+F   DF + D    +   + G P DLVLSDMA   
Sbjct: 88  LG---DSGRVIALDILEMPPLAGVEFLHGDFREDDVLSQLESLLDGQPVDLVLSDMAPNM 144

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  R M L E A  FA   L  GG FL+K FQG   ++ +  L++ ++KV   K
Sbjct: 145 SGVDAVDQPRAMYLAELAMEFADNHLRPGGAFLIKLFQGVGFDEYVRQLRRRYEKVAIRK 204

Query: 208 PVASRAESVEMFLLAKG 224
           P ASR  S E++ L +G
Sbjct: 205 PAASRKRSPEVYALGQG 221


>gi|330981082|gb|EGH79185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 204

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 124/202 (61%), Gaps = 4/202 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           ++ +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV
Sbjct: 6   TNHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SR  S E +LLA+GF
Sbjct: 183 QMRKPSSSRDRSREQYLLARGF 204


>gi|332283363|ref|YP_004415274.1| ribosomal RNA large subunit methyltransferase j [Pusillimonas sp.
           T7-7]
 gi|330427316|gb|AEC18650.1| ribosomal RNA large subunit methyltransferase j [Pusillimonas sp.
           T7-7]
          Length = 211

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 3/201 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+ +HINDPYV+ AQ +G+RAR+A+KL +I +  +++Q    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWVMQHINDPYVKMAQQKGYRARAAFKLTEILDAEKLMQPGDIVVDLGSAPGSWSQVA 66

Query: 86  -ARITGSNA-NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
             R+ G+    + R++A+D+L MEPI GV+F + DF +    E ++  +G    DLV+SD
Sbjct: 67  RERLAGAGGVVDGRIIALDMLPMEPIAGVEFIQGDFREDIMLEQLKNLLGDAQVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +C+ A  FA + L   G  +VK F G   + I+   K+ F +
Sbjct: 127 MAPNLSGVSSADSARIQHVCDLALDFACQHLKPEGALIVKAFHGSGFSQIVESFKRCFLR 186

Query: 203 VIHVKPVASRAESVEMFLLAK 223
           V+  KP ASR +S E FL+A+
Sbjct: 187 VVERKPKASRDKSSETFLVAR 207


>gi|258544935|ref|ZP_05705169.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
           hominis ATCC 15826]
 gi|258519855|gb|EEV88714.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
           hominis ATCC 15826]
          Length = 208

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 123/204 (60%), Gaps = 4/204 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H ND YVQ+AQ EG+R+R+ YKL++I EK ++++    +V+LG++PG WSQ 
Sbjct: 6   TSQRWLKEHFNDIYVQKAQQEGYRSRAVYKLMEIQEKDRLIRPGMVVVELGAAPGGWSQY 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            A+  G      R++A+DIL M+ +  V F   DF +    + +   +G +  +LV+SDM
Sbjct: 66  VAQCLGGRG---RMIALDILPMDALPDVTFILGDFREQAVLDALYAELGDSAVNLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A  T G R +D  ++M L E A  FA   L  GGDFL K F G   + +L  LK  F  V
Sbjct: 123 APNTSGVRSVDQAKSMYLVELALDFAQSRLAAGGDFLTKIFHGPGFDTLLRSLKSQFLTV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP ASRA S E +LLA+GF++
Sbjct: 183 QTRKPEASRARSQETYLLARGFKR 206


>gi|84624459|ref|YP_451831.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575911|ref|YP_001912840.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|83305670|sp|Q5GYL7|RLME_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123521583|sp|Q2P1M0|RLME_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705322|sp|B2SUB8|RLME_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84368399|dbj|BAE69557.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520363|gb|ACD58308.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 210

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++A+ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQ- 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLVLSDM
Sbjct: 66  --QVRKSMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 TIRKPAASRKRSPEVYALGQGKR 206


>gi|254522154|ref|ZP_05134209.1| ribosomal RNA large subunit methyltransferase J [Stenotrophomonas
           sp. SKA14]
 gi|219719745|gb|EED38270.1| ribosomal RNA large subunit methyltransferase J [Stenotrophomonas
           sp. SKA14]
          Length = 210

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DP+V++AQ EG R+R+AYKL ++ E+ ++L+ +  +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             R  G   +  RV+A+DILDM P+ GV+F   DF +          +G  P DLVLSDM
Sbjct: 67  VRRQIG---DTGRVLALDILDMPPLAGVEFLHGDFREETVLSQFEAMLGDQPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG   +D +  +++ + KV
Sbjct: 124 APNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVREMRRRYDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 SIRKPEASRKRSPEVYALGQGKR 206


>gi|330950314|gb|EGH50574.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae Cit
           7]
          Length = 216

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++ G WSQV
Sbjct: 6   TSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAARGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+SDM
Sbjct: 66  TSRLIGGQG---RLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F KV
Sbjct: 123 APNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E +LLA+GFR
Sbjct: 183 QMRKPSSSRDRSREQYLLARGFR 205


>gi|149927097|ref|ZP_01915355.1| ribosomal RNA large subunit methyltransferase j [Limnobacter sp.
           MED105]
 gi|149824318|gb|EDM83538.1| ribosomal RNA large subunit methyltransferase j [Limnobacter sp.
           MED105]
          Length = 211

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV--AARITG 90
           HINDPYV+ A   G+RAR+A+KL +I E   +L+   ++VDLGS+PGSWSQV   A +  
Sbjct: 15  HINDPYVKMATNAGYRARAAFKLKEIAEPEGLLKPGIKVVDLGSAPGSWSQVLREALVGP 74

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
               N R++A+D+L MEPI GV+F + DF D    E + Q +GG   DLV+SDMA    G
Sbjct: 75  GGVINGRIIALDLLPMEPIAGVEFIQGDFRDEAVLEDLNQRLGGEKLDLVVSDMAPNLSG 134

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D  R   +CE A  FAL  L   G  +VK F G + ++I+  +K+ F+ V   KP 
Sbjct: 135 VAAADSARIEHVCELAIDFALNHLKPNGALIVKIFHGSSYSNIVHQMKQVFKSVSPRKPK 194

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR  S E FLL KG +
Sbjct: 195 ASRDRSRETFLLCKGLK 211


>gi|319778416|ref|YP_004129329.1| Cell division protein FtsJ [Taylorella equigenitalis MCE9]
 gi|317108440|gb|ADU91186.1| Cell division protein FtsJ [Taylorella equigenitalis MCE9]
          Length = 210

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 126/203 (62%), Gaps = 2/203 (0%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S++W+++HINDPYV+ AQ +G+RAR+A+KL++I +  +++     IVDLGSSPGSWSQVA
Sbjct: 7   SKNWIHQHINDPYVKLAQQKGYRARAAFKLIEILDAEKLMHRGDIIVDLGSSPGSWSQVA 66

Query: 86  -ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
             R+  +   + R++A+D+L ME I GV+F + DF D    + + + +G    DLV+SDM
Sbjct: 67  RERLLKNGVIDGRIIALDLLPMEHIEGVEFIQGDFRDETILKALEEKVGFQQVDLVISDM 126

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D  R   + E A  FA   L   G  +VK F G   + ++ L KK+F +V
Sbjct: 127 APNLSGISSADSARIQHVVELAVEFATNHLKPQGALIVKAFHGSGFSQLIELFKKNFVRV 186

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           + +KP ASR +S E F++ K  +
Sbjct: 187 VEIKPKASRDKSSETFIVGKKLK 209


>gi|166712463|ref|ZP_02243670.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 210

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++A+ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQ- 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  +  RVVA+DILDM  + GV+F   DF +          +G  P DLVLSDM
Sbjct: 66  --QVRKSMGDRGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 TIRKPAASRKRSPEVYALGQGKR 206


>gi|194365244|ref|YP_002027854.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Stenotrophomonas
           maltophilia R551-3]
 gi|226705317|sp|B4SRA0|RLME_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|194348048|gb|ACF51171.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Stenotrophomonas
           maltophilia R551-3]
          Length = 210

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DP+V++AQ EG R+R+AYKL ++ E+ ++L+ +  +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             R  G   +  RV+A+DILDM P+ GV+F   DF +          +G  P DLVLSDM
Sbjct: 67  VRRQIG---DTGRVLALDILDMPPLAGVEFLHGDFREETVLSQFEAMLGDQPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG   +D +  +++ + KV
Sbjct: 124 APNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRRYDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 SIRKPEASRKRSPEVYALGQGKR 206


>gi|58582573|ref|YP_201589.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427167|gb|AAW76204.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 224

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++A+ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 21  SSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQ- 79

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLVLSDM
Sbjct: 80  --QVRKSMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDM 137

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ ++KV
Sbjct: 138 APNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKV 197

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 198 TIRKPAASRKRSPEVYALGQGKR 220


>gi|83747764|ref|ZP_00944798.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
           UW551]
 gi|83725536|gb|EAP72680.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
           UW551]
          Length = 279

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 17/237 (7%)

Query: 3   KPPGSS--SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           KP  S+   RRG     KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E
Sbjct: 44  KPAASAMFRRRGANSMAKNKFNQ----SWLHDHINDPYVKLAQREGYRARAAYKLKEIDE 99

Query: 61  KHQILQSNRRIVDLGSSPGSWSQ-VAARITGS-NANNTR----VVAIDILDMEPILGVKF 114
           + ++++  + IVDLG++PGSWSQ V  ++  S  A + R    +VAIDIL MEP+  V F
Sbjct: 100 QDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVAF 159

Query: 115 FKFDFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            + DF +   ++ +   +     GG  DLVLSDMA    G    D  R   + E A  FA
Sbjct: 160 IQGDFREEAVFQQLEAIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA 219

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              L   G  L+K F G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 220 QAHLKPEGALLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 276


>gi|190573711|ref|YP_001971556.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
 gi|226705318|sp|B2FKA1|RLME_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|190011633|emb|CAQ45252.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
          Length = 210

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DP+V++AQ EG R+R+AYKL ++ E+ ++L+ +  +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             R  G   +  RV+A+DILDM P+ GV+F   DF +          +G  P DLVLSDM
Sbjct: 67  VRRQIG---DTGRVLALDILDMPPLAGVEFLHGDFREEAVLSQFEAMLGDQPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG   +D +  +++ + KV
Sbjct: 124 APNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRRYDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 SIRKPEASRKRSPEVYALGQGKR 206


>gi|91788714|ref|YP_549666.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas sp. JS666]
 gi|123059751|sp|Q129M4|RLME_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91697939|gb|ABE44768.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas sp. JS666]
          Length = 247

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/212 (40%), Positives = 126/212 (59%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E   +++    +VDLGS+PG+WSQ  
Sbjct: 27  NKAWLHDHINDPYVKLAQKEGYRARAAYKLKEIDETLGLIKPGDCVVDLGSTPGAWSQYV 86

Query: 86  AR---ITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP---- 136
            R    TG+ A   N R++ +D+L MEPI GV F + DF + +  + + QA+  +     
Sbjct: 87  RRKLSPTGAAAGELNGRIIGLDMLPMEPIEGVAFIQGDFREPEVLQKLEQALATDKGQVK 146

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R + L E A  FA   +   G  +VK F G   ++++ L
Sbjct: 147 VDLVISDMAPNLSGIESADAARIVHLVELAVEFAQNRMKPDGTLVVKLFHGSGYDELVKL 206

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +  F+ V  +KP ASR+ S E FL+ KG +K
Sbjct: 207 FRATFKVVKPMKPKASRSNSSETFLVGKGLKK 238


>gi|326317394|ref|YP_004235066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374230|gb|ADX46499.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 218

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 6/215 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E   +++  + +VDLGS+P
Sbjct: 4   NTKSKKVNKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAP 63

Query: 79  GSWSQ-----VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQ     +A     +   N  ++A+DIL MEPI GV F + DF + D    +++ + 
Sbjct: 64  GAWSQYLRRRMAPAGAATGQLNGTLIALDILPMEPIEGVTFLQGDFREEDVLARLQETVQ 123

Query: 134 GNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G P D+V+SDMA    G   +D +R   L E A  FA + L   G  +VK F G     +
Sbjct: 124 GRPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAQQHLKPDGALVVKLFHGSGYTQL 183

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + L K++F+ V  +KP ASR +S E FL+  G RK
Sbjct: 184 VQLFKENFRTVKPMKPKASRDKSSETFLVGMGLRK 218


>gi|328675584|gb|AEB28259.1| Cell division protein ftsJ / Ribosomal RNA large subunit
           methyltransferase J [Francisella cf. novicida 3523]
          Length = 206

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   D+++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFCSDDTYQKLNTLVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L++  F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANMNLNKNGSFVAKVFQGEGSDEYLKLVRDSFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A GF+
Sbjct: 183 IQFKPKSSRAKSREFYVIATGFK 205


>gi|13386002|ref|NP_080786.1| putative ribosomal RNA methyltransferase 2 [Mus musculus]
 gi|81880352|sp|Q9CPY0|RRMJ2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase 2; AltName:
           Full=Protein ftsJ homolog 2; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase
 gi|12844585|dbj|BAB26420.1| unnamed protein product [Mus musculus]
 gi|12856472|dbj|BAB30680.1| unnamed protein product [Mus musculus]
 gi|26346843|dbj|BAC37070.1| unnamed protein product [Mus musculus]
 gi|40555804|gb|AAH64776.1| FtsJ homolog 2 (E. coli) [Mus musculus]
 gi|74219034|dbj|BAE26662.1| unnamed protein product [Mus musculus]
 gi|148687177|gb|EDL19124.1| FtsJ homolog 2 (E. coli) [Mus musculus]
          Length = 246

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 134/224 (59%), Gaps = 7/224 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T     R   G+   WL RH+ DP+V+ A++E +R RSA+KLL++NEKHQIL+   
Sbjct: 15  RRLHTAVCHYRGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGL 74

Query: 70  RIVDLGSSPGSWSQVAA-RITGSNANNTR----VVAIDILDMEPILGVKFF-KFDFLDLD 123
           R++D G++PG+WSQVA  R+  + A+++     V+ +D+L + P+ G  F    D  D  
Sbjct: 75  RVLDCGAAPGAWSQVAVQRVNATGADSSSPVGFVLGVDLLHIFPLAGATFLCPADVTDPR 134

Query: 124 SWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +++ I + +     D++LSDMA    G R +DH + +SLC      A+++L+ GG  L K
Sbjct: 135 TFQKILELLPSRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           T+ G  ++ +   L + FQ    VKP ASR ES E++LLA  +R
Sbjct: 195 TWAGSKSHLLQKRLTQEFQSTRVVKPEASRKESSEVYLLATQYR 238


>gi|332259367|ref|XP_003278759.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
           [Nomascus leucogenys]
          Length = 423

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 19/235 (8%)

Query: 5   PGSSSRRG----------LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           PG SSR G          +  + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+K
Sbjct: 182 PGRSSRGGGRPQRQWFHTVGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFK 239

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPI 109
           LL++NE+HQIL+   R++D G++PG+WSQVA +   +   +       V+ +D+L + P+
Sbjct: 240 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL 299

Query: 110 LGVKFF-KFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
            G  F    D  D  + + I + + GG  D++LSDMA    G R +DH R +SLC     
Sbjct: 300 EGATFLCPADVTDPRTSQRILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLS 359

Query: 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
              ++L  GG FL KT+ G  +  +   L + FQ V  +KP ASR ES E++ LA
Sbjct: 360 VTPDILQPGGTFLCKTWAGSLSRRLQRRLTEEFQNVRIMKPEASRKESSEVYFLA 414


>gi|92115197|ref|YP_575125.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Chromohalobacter
           salexigens DSM 3043]
 gi|122419130|sp|Q1QSY2|RLME_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91798287|gb|ABE60426.1| 23S rRNA Um-2552 2'-O-methyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 210

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 122/198 (61%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H +D YVQR+  +G+R+R++YKLL+++ K  +L+    ++DLG++PG WSQ+AA  
Sbjct: 14  WLKEHFDDRYVQRSWQDGYRSRASYKLLELDAKDALLKPGMTVIDLGAAPGGWSQIAADK 73

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPT 147
            G       V+A DIL+M+ + GV F + DF +++  E I  A+ G   DLV+SDMA   
Sbjct: 74  VGDKGC---VIASDILEMDALAGVTFVQGDFTEMEVLEQILVALEGRRVDLVMSDMAPNM 130

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID  + M L E A   A + L+ GG FL K FQG   +  L  L+  F+KV+  K
Sbjct: 131 SGMAAIDQPQAMYLVELALDLARQTLSPGGRFLAKVFQGEGFDAYLKELRGSFRKVVTRK 190

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S E++LLA+GF
Sbjct: 191 PEASRARSREVYLLAEGF 208


>gi|325916042|ref|ZP_08178332.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537718|gb|EGD09424.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 210

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG WSQ 
Sbjct: 7   SSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQ- 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  ++ RV+A+DILDM  + GV F   DF +          +G  P DLVLSDM
Sbjct: 66  --QVRKSMGDSGRVLALDILDMPALAGVDFLHGDFREQAVLSQFEAMLGDVPVDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ + KV
Sbjct: 124 APNKSGMDAVDQPRMMHLAELAMEFADTHLKTGGAFLIKLFQGVGSDDYIRELRRRYDKV 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 184 TIRKPAASRKRSPEVYALGQGKR 206


>gi|241667177|ref|ZP_04754755.1| ribosomal RNA large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254875729|ref|ZP_05248439.1| ribosomal large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254841750|gb|EET20164.1| ribosomal large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 206

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +++ W+  H +D YV +A   G+R+R+++K+L+I +K+ + + N  IVDLG++PG WS+ 
Sbjct: 6   TTKKWIQDHTSDYYVLQANKLGYRSRASFKILEIQDKYNLFKQNMFIVDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G   NN +++A+D+L+M PI GV+F + DF   +++E + Q I     D V+SDM
Sbjct: 66  VVKFIG---NNGKLIALDLLEMAPIAGVEFIQGDFSSDETYERLNQLINDKKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  R++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQARSIYLLELALDFATTNLNRNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR +S E +++A GF+
Sbjct: 183 TQFKPKSSRPKSREFYVVATGFK 205


>gi|297679750|ref|XP_002817683.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like isoform
           1 [Pongo abelii]
 gi|297679752|ref|XP_002817684.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like isoform
           2 [Pongo abelii]
          Length = 246

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 128/217 (58%), Gaps = 9/217 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G
Sbjct: 23  RCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCG 80

Query: 76  SSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIR 129
           ++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I 
Sbjct: 81  AAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRIL 140

Query: 130 QAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + + GG  D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ G  
Sbjct: 141 EVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 200

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 201 SRQLQRRLTEEFQNVRIIKPEASRRESSEVYFLATQY 237


>gi|254448851|ref|ZP_05062307.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium HTCC5015]
 gi|198261541|gb|EDY85830.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium HTCC5015]
          Length = 206

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 114/203 (56%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV RAQ EG+R+R+ YKL +I++K ++  S +R++DLG++PG WSQ 
Sbjct: 6   SSQRWLKEHFDDIYVARAQQEGFRSRAVYKLQEIDQKAKLFHSGQRVIDLGAAPGGWSQY 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            A   G       VVA DIL+MEPI  V F   DF +      I    GG P DLV+SDM
Sbjct: 66  VADAVGDKGT---VVASDILEMEPIPNVDFVCGDFREEVVLNKILDQFGGEPADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  R M L E A   A + L  GG F+ K FQG  ++  +  LK  F  V
Sbjct: 123 APNMSGMDAIDQPRAMYLVELALDLARQTLRPGGGFVCKLFQGEGSDVFIAELKSSFNSV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++   KGF+
Sbjct: 183 AVRKPKASRPRSREVYAQCKGFK 205


>gi|207723995|ref|YP_002254393.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum MolK2]
 gi|207742905|ref|YP_002259297.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum IPO1609]
 gi|206589203|emb|CAQ36165.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum MolK2]
 gi|206594300|emb|CAQ61227.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum IPO1609]
          Length = 230

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 15/228 (6%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RRG     KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  +
Sbjct: 4   RRGANSMAKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQ 59

Query: 70  RIVDLGSSPGSWSQ-VAARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLD 123
            IVDLG++PGSWSQ V  ++  S  A + R    +VAIDIL MEP+  V F + DF +  
Sbjct: 60  VIVDLGAAPGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVAFIQGDFREEA 119

Query: 124 SWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
            ++ +   +     GG  DLVLSDMA    G    D  R   + E A  FA   L   G 
Sbjct: 120 VFQQLEAIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGA 179

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L+K F G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 180 LLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 227


>gi|253999580|ref|YP_003051643.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. SIP3-4]
 gi|253986259|gb|ACT51116.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. SIP3-4]
          Length = 207

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 128/201 (63%), Gaps = 8/201 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+ND +V+RAQ +G+RAR+AYKL++I++K Q+++    IVDLG++PGSWSQV
Sbjct: 6   TSKGWMQEHVNDEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGSWSQV 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNP-DLVLS 141
           A  R+ G      R++A+D+L+M  I GV F + DF + D+  F + + +   P DLV++
Sbjct: 66  AVQRLKGQG----RIIALDLLEMAAIPGVDFIQGDFRE-DAVLFQLEEKLNNRPIDLVIA 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D      L E A  F+L+ L  GG+FLVK F G   ++I+  ++  F 
Sbjct: 121 DMAPNISGISSVDQANAAYLTELALEFSLKWLKPGGNFLVKVFIGSGFDEIMKTMRLGFD 180

Query: 202 KVIHVKPVASRAESVEMFLLA 222
           KV+  KP ASR  S E++LL 
Sbjct: 181 KVVTRKPKASRDRSSEVYLLG 201


>gi|198424725|ref|XP_002124852.1| PREDICTED: similar to cell division protein ftsj [Ciona
           intestinalis]
          Length = 273

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
           ++++R ++DP+V+   LEG+R RSAYKL+ I EKH +L+   ++VDLG++PGSWSQVAA 
Sbjct: 65  EYVSRQLSDPFVKMRHLEGYRCRSAYKLMDIVEKHDLLKPGMKVVDLGAAPGSWSQVAAE 124

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDM 143
              +  ++  V+A+D+L   P+ GV     DF   ++ + I+  +G       D+VL D 
Sbjct: 125 RVINKDDDGLVIAVDLLKFPPLDGVTQITGDFTKKETQDEIKALLGTEENRFVDIVLCDA 184

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +  DHL  + +  AAT F L+ML   G+FL K   G  T  I   L  HF  V
Sbjct: 185 APSASGFKNKDHLAIVQIIAAATNFTLKMLANHGNFLFKILDGTETMKIKKFLSLHFMSV 244

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
             +KP ASR+ES E F+L K + +
Sbjct: 245 ASLKPKASRSESAEHFILCKNYNR 268


>gi|121594725|ref|YP_986621.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. JS42]
 gi|120606805|gb|ABM42545.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax sp. JS42]
          Length = 237

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 135/229 (58%), Gaps = 7/229 (3%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           P    R  L+ K + +S +  ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E+  +
Sbjct: 8   PDPGRRTDLSMKAQTKSKK-VNKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGL 66

Query: 65  LQSNRRIVDLGSSPGSWSQ-VAARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDF 119
           ++    +VDLGSSPG+WSQ V  R++   A     N  ++A+DIL MEPI GV F + DF
Sbjct: 67  IKPGHVVVDLGSSPGAWSQYVRRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDF 126

Query: 120 LDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
            + +    +++A+   P D+V+SDMA    G   +D +R   L E A  FA+  L   G 
Sbjct: 127 REEEVLAGLQEAVQARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGA 186

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +VK F G   + ++ L K  F+ V  +KP ASR +S E FL+  G ++
Sbjct: 187 LVVKLFHGSGYSQLVQLFKDTFRVVKPMKPKASRDKSSETFLVGMGLKR 235


>gi|15836699|ref|NP_297387.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|71275932|ref|ZP_00652215.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Dixon]
 gi|71900018|ref|ZP_00682163.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
 gi|170729314|ref|YP_001774747.1| cell division protein [Xylella fastidiosa M12]
 gi|81548421|sp|Q9PH52|RLME_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705325|sp|B0U1F2|RLME_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|9104872|gb|AAF82907.1|AE003863_9 cell division protein [Xylella fastidiosa 9a5c]
 gi|71163309|gb|EAO13028.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Dixon]
 gi|71730228|gb|EAO32314.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
 gi|167964107|gb|ACA11117.1| cell division protein [Xylella fastidiosa M12]
          Length = 213

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DP+V++AQ EG R+R+AYKL +I ++ +IL+ N  ++DLG++PG WSQ 
Sbjct: 6   SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPGGWSQ- 64

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +I     +  RV+A+DI+ M P++G++F + DF D      +   + G P DLVLSDM
Sbjct: 65  --QIRKQMGDRGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQPVDLVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   +  GG FL+K F G  ++D +  L+  ++KV
Sbjct: 123 APNKSGMDAMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDDYIRQLRHRYKKV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              KP+ASR  S E+++L  G
Sbjct: 183 AIRKPLASRKRSPEVYILGDG 203


>gi|110833182|ref|YP_692041.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
           borkumensis SK2]
 gi|123345833|sp|Q0VSS9|RLME_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110646293|emb|CAL15769.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
           borkumensis SK2]
          Length = 208

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H NDP+V +AQ +G+R+R+++KLL++NEK ++ +    ++DLG++PG WSQV
Sbjct: 9   TSKAWLKEHFNDPWVAKAQEQGYRSRASFKLLEMNEKDRLFRPGMAVLDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           A ++ G       V+A DIL M+ +  V F + DF +   +E I  A+G    DLV+SDM
Sbjct: 69  AGQLIGGRGT---VIASDILAMDALPDVTFIEGDFREEVIYEQILMALGDQRADLVMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+  +D  R M L E A   A  +L   G FLVK FQG    D    L+  F++V
Sbjct: 126 APNMSGNSAVDQPRAMYLAELALDMAERVLEPDGVFLVKVFQGEGFEDYRKALQSRFKRV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASRA S E++ L  G +
Sbjct: 186 VSRKPAASRARSTEVYQLGFGLK 208


>gi|328697206|ref|XP_001950144.2| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
           [Acyrthosiphon pisum]
          Length = 234

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 124/209 (59%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R   DPYV++A+++ +R RSA+KLLQ++++  IL+    ++D+G++PGSWSQV
Sbjct: 21  SSKEWLLRQKTDPYVEKAKIKSYRCRSAFKLLQMDDRFSILKPGLCVIDIGAAPGSWSQV 80

Query: 85  AARITGSNANNTRV-----VAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           AA    SNA N+ +     + ID+  M PI GV      DF    +W+ I++ +   P D
Sbjct: 81  AASRINSNATNSEIPTGLLIGIDLQQMYPIEGVTLLGNSDFTSPKTWQKIKELLNNRPID 140

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA    G + +DH   + L  +   FA+   N+G   L+K   G     I   L 
Sbjct: 141 VVLSDMAPNASGVKHLDHDLIIKLAYSVVKFAVLNSNVGATCLIKILDGNQNAKIENTLI 200

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +  V  VKP ASR++S E +LLA+GF+
Sbjct: 201 KFYSNVKFVKPEASRSDSAEKYLLARGFK 229


>gi|114611931|ref|XP_518934.2| PREDICTED: hypothetical protein LOC463224 [Pan troglodytes]
 gi|332864346|ref|XP_003318261.1| PREDICTED: hypothetical protein LOC463224 [Pan troglodytes]
          Length = 246

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 127/216 (58%), Gaps = 9/216 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G+
Sbjct: 24  CKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGA 81

Query: 77  SPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQ 130
           +PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I +
Sbjct: 82  APGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILE 141

Query: 131 AI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            + GG  D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ G  +
Sbjct: 142 VLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQS 201

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 202 RRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 237


>gi|192359469|ref|YP_001983134.1| ribosomal RNA large subunit J [Cellvibrio japonicus Ueda107]
 gi|226703290|sp|B3PLQ4|RLME_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|190685634|gb|ACE83312.1| ribosomal RNA large subunit J [Cellvibrio japonicus Ueda107]
          Length = 211

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 124/202 (61%), Gaps = 4/202 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV+++  +G+R R++YKLL++N+K ++++    +VDLG++PG WSQV
Sbjct: 6   SSNRWLEEHFSDQYVKKSHADGYRTRASYKLLELNDKDRLIRPGMLVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A +  G++    RVVA DIL M+ + GV+F + DF D   +  I  AIG  P DLV+SDM
Sbjct: 66  AGQQVGTHG---RVVASDILPMDTLEGVEFIQGDFTDDSVFNQILLAIGDTPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  + M L E A   A  +L   G+F+ K F G   +  L  LK  F+KV
Sbjct: 123 APNMSGINAVDQPQAMYLVELALDMAKRVLKPQGNFVAKVFHGEGYDQYLKDLKGCFEKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
           +  KP ASR+ S E++++ KGF
Sbjct: 183 VIRKPDASRSRSREVYVVGKGF 204


>gi|60417326|emb|CAI51686.1| putative ribosomal RNA methyltransferase 2 [Nyctotherus ovalis]
          Length = 202

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 1/201 (0%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +SR W+ RH+ D +V+ ++   +R+R+A+KL+ I+ KH +++   R+V++GS+PGSW+QV
Sbjct: 2   ASRQWMRRHVRDTFVKASRQMNYRSRAAFKLIDIDSKHGLMKPGMRVVEIGSAPGSWTQV 61

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
             R   S + +  VVA+D+L M+P+ G  F +   L   + E I +A+GG    LV SD 
Sbjct: 62  IVRQVRSTSASPTVVAVDVLKMKPVSGAVFVEGSILARKTHEEIERALGGEKAGLVCSDA 121

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A   +G    D   T+ L  A    A++ L  GG+FL+K  QG    ++   +K+HF  +
Sbjct: 122 APEFVGEGDADQEATIQLNYAVLNSAVKYLKNGGNFLMKVMQGWIEKEMKVEIKRHFDSL 181

Query: 204 IHVKPVASRAESVEMFLLAKG 224
            +VKP ASRA+S E+++LAKG
Sbjct: 182 SYVKPPASRADSREIYILAKG 202


>gi|332993370|gb|AEF03425.1| 23S rRNA methyltransferase J [Alteromonas sp. SN2]
          Length = 209

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H ND YVQ+AQ +G R+R+ +KL +I +K +++     +VDLG++PG WSQ+
Sbjct: 9   SSKRWLTEHFNDHYVQKAQKQGKRSRAFFKLEEIQQKDKLISKGNTVVDLGAAPGGWSQL 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A+ +     +N +V+A DIL M+ I+GV F + DF D      +   IGGN  D+VLSDM
Sbjct: 69  ASELV---RDNGQVIACDILPMDSIVGVDFLQGDFRDEAVLNALLNRIGGNTVDIVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+  +D   +M LCE A     ++L  GG F++K FQG   +  L  L+  F  +
Sbjct: 126 APNLSGNAAVDQAGSMYLCELALDMCHQVLKPGGGFMIKVFQGEGFDTFLRALRDSFTTI 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR+ S E++L+A G++
Sbjct: 186 KTRKPDSSRSRSREVYLVALGYK 208


>gi|300795838|ref|NP_001178187.1| putative ribosomal RNA methyltransferase 2 [Bos taurus]
 gi|297490658|ref|XP_002698278.1| PREDICTED: FtsJ homolog 2-like [Bos taurus]
 gi|296473105|gb|DAA15220.1| FtsJ homolog 2-like [Bos taurus]
          Length = 244

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 130/214 (60%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +S  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G++PG
Sbjct: 25  KSRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPGLRVLDCGAAPG 84

Query: 80  SWSQVAA-RITGSNANNTR----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI- 132
           +WSQVA  R+  +  + +     V+ +D+L + P+ G  F    D  D  ++  I++ + 
Sbjct: 85  AWSQVAVQRVNAAGTDPSAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFRKIQELLP 144

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  D++LSDMA    G R +DH R +SLC +      ++L+  G FL KT+ G  +  +
Sbjct: 145 GGRADVILSDMAPNATGIRSLDHDRLISLCLSLLDMVPDVLHPRGTFLCKTWAGSQSQRL 204

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              L + FQ    VKP ASR ES E++LLA  +R
Sbjct: 205 QKRLTQEFQNTRTVKPEASRKESSEVYLLATQYR 238


>gi|161830541|ref|YP_001597195.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 331]
 gi|189040687|sp|A9N8M5|RLME_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|161762408|gb|ABX78050.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 331]
          Length = 212

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 128/205 (62%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H  DPYV+RA+ EG+ +R+AYKLL+I++K+++ + +  ++DLG++PG WSQVA
Sbjct: 4   SKRWLEEHAKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFI--RQAIGGNPDLVL 140
             + G       V+AID+L M+ +L V F + DF +    +  E I  ++ + G  DLV+
Sbjct: 64  KDLVGPKG---VVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTGQVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G + +D  R++ L E A   A ++L  GG FLVK FQG   +  L  L+ +F
Sbjct: 121 SDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V  +KP ASR+ S E+++LA  F
Sbjct: 181 NQVKFLKPSASRSRSSEIYILAGEF 205


>gi|300691218|ref|YP_003752213.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
 gi|299078278|emb|CBJ50926.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
          Length = 221

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 127/212 (59%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GG 134
             ++  S  A + R    +VAIDIL MEP+  V F + DF +   ++ + + +     GG
Sbjct: 67  RNKLADSPRAKDGRIDGAIVAIDILPMEPVSDVTFIQGDFREEAVYQQLEKIVLDTTGGG 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FAL  L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFALAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|222110672|ref|YP_002552936.1| ribosomal RNA methyltransferase rrmj/ftsj [Acidovorax ebreus TPSY]
 gi|221730116|gb|ACM32936.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax ebreus TPSY]
          Length = 220

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 6/208 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLGSSPG+WSQ V
Sbjct: 11  NKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYV 70

Query: 85  AARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
             R++   A     N  ++A+DIL MEPI GV F + DF + +    +++A+ G P D+V
Sbjct: 71  RRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLARLQEAVQGRPVDVV 130

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D +R   L E A  FA+  L   G  +VK F G   + ++ L K  
Sbjct: 131 VSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDT 190

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F+ V  +KP ASR +S E FL+  G ++
Sbjct: 191 FRVVKPMKPKASRDKSSETFLVGMGLKR 218


>gi|89255843|ref|YP_513205.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica LVS]
 gi|115314330|ref|YP_763053.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156501823|ref|YP_001427888.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167010065|ref|ZP_02274996.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367205|ref|ZP_04983235.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica 257]
 gi|290954398|ref|ZP_06559019.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312175|ref|ZP_06802980.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122325637|sp|Q0BNB8|RLME_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122501138|sp|Q2A4Z7|RLME_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040692|sp|A7NAC9|RLME_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|89143674|emb|CAJ78873.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129229|gb|ABI82416.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253025|gb|EBA52119.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica 257]
 gi|156252426|gb|ABU60932.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 206

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG+SPG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGASPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 183 IQFKPKSSRAKSREFYVIATEFK 205


>gi|254482484|ref|ZP_05095723.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2148]
 gi|214037175|gb|EEB77843.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2148]
          Length = 208

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 4/205 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           + SS+ WL  H +D +VQ+A+ +G+R+R+ YKLL++ +K  +++    +VDLGS+PG WS
Sbjct: 5   KSSSKAWLKEHHDDLFVQQAKRDGYRSRACYKLLELQDKDHLMKPGMTVVDLGSAPGGWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           QV+A + G   +  RVVA DIL M+ +  V+F + DF +   +E I QAI G   DLV+S
Sbjct: 65  QVSADLVG---HKGRVVASDILHMDNLADVEFIQGDFTEDAVFERILQAIDGESVDLVVS 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D   +M L E A   A  +L+ GG F+ K FQG   +++    +  F 
Sbjct: 122 DMAPNMSGVAAVDQPGSMYLVELALDMARRVLSPGGSFVTKVFQGEGFDELFRDTRDSFD 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           KV+  KP ASR  S E++L+A GF+
Sbjct: 182 KVLTRKPKASRPRSREVYLVASGFK 206


>gi|72110328|ref|XP_787303.1| PREDICTED: similar to cell division protein ftsj
           [Strongylocentrotus purpuratus]
 gi|115931468|ref|XP_001187092.1| PREDICTED: similar to cell division protein ftsj
           [Strongylocentrotus purpuratus]
          Length = 243

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/238 (39%), Positives = 141/238 (59%), Gaps = 13/238 (5%)

Query: 1   MVKPPGSSSRRGLTQK----VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M  P  S    G+ +K    +KN+S   SS+ W+NRH+NDP+V++A+ + +RARSAYKLL
Sbjct: 1   MFSPTRSLHLSGVLRKKKPGLKNKS--HSSQQWINRHVNDPFVKQARADSYRARSAYKLL 58

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILG 111
           +I+ ++++L+    ++D G++PGSW+QVA   T S   N       V+A+D+L M+PI G
Sbjct: 59  EIDSRYRLLKPGNTVIDCGAAPGSWTQVAVERTNSALQNPAKPRGIVIAVDLLHMQPIEG 118

Query: 112 -VKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            +   + DF D    E I   +     D VLSDMA    G   +DH + ++L   A  FA
Sbjct: 119 AIMLGQSDFTDPAVQERILGHLDKRLSDAVLSDMAPNATGIHAMDHEQIIALARTAMGFA 178

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            ++L   G FLVK + G  T  +   L + F+ V  ++P ASR ES E+FLLA+GF++
Sbjct: 179 TKVLCENGHFLVKLWDGHDTGLLKRDLVESFRSVKILRPEASRKESSEIFLLAQGFKR 236


>gi|58698158|ref|ZP_00373080.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535308|gb|EAL59385.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 187

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 123/188 (65%), Gaps = 9/188 (4%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           +Q+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG W QVA++  G+N     V
Sbjct: 1   MQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVASQ-KGAN-----V 54

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + +DH+R
Sbjct: 55  VALDVKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCGLKSLDHIR 112

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
            M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR+ES E
Sbjct: 113 IMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSRSESTE 172

Query: 218 MFLLAKGF 225
           M+L++ GF
Sbjct: 173 MYLVSLGF 180


>gi|29654650|ref|NP_820342.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
 gi|154707305|ref|YP_001424788.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|212212272|ref|YP_002303208.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuG_Q212]
 gi|81628790|sp|Q83BY4|RLME_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040686|sp|A9KGE6|RLME_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703292|sp|B6IZD5|RLME_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|29541918|gb|AAO90856.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
 gi|154356591|gb|ABS78053.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|212010682|gb|ACJ18063.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 212

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 128/205 (62%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H  DPYV+RA+ EG+ +R+AYKLL+I++K+++ + +  ++DLG++PG WSQVA
Sbjct: 4   SKRWLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFI--RQAIGGNPDLVL 140
             + G       V+AID+L M+ +L V F + DF +    +  E I  ++ + G  DLV+
Sbjct: 64  KDLVGPKG---VVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTGQVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G + +D  R++ L E A   A ++L  GG FLVK FQG   +  L  L+ +F
Sbjct: 121 SDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V  +KP ASR+ S E+++LA  F
Sbjct: 181 NQVKFLKPSASRSRSSEIYILAGEF 205


>gi|114562160|ref|YP_749673.1| 23S rRNA methyltransferase J [Shewanella frigidimarina NCIMB 400]
 gi|122300525|sp|Q086I0|RLME_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114333453|gb|ABI70835.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella frigidimarina
           NCIMB 400]
          Length = 209

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 124/204 (60%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL +I EK  +++    +VDLG++PG WSQ
Sbjct: 8   ASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDHLIKQGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           VAA++TG   +  +V+A DIL M+PI+GV F + DF +    + + + +G +  D+VLSD
Sbjct: 68  VAAKLTG---DKGKVIACDILPMDPIVGVDFLQGDFREDKVLQALLERVGQDKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   +D +  +K+ F+ 
Sbjct: 125 MAPNMSGSGAVDQPRAMYLVELALDMCHQVLTPNGCFAVKVFQGEGFDDYIKTVKQAFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|325982670|ref|YP_004295072.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas sp. AL212]
 gi|325532189|gb|ADZ26910.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas sp. AL212]
          Length = 205

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+ND +V++A+ EG+R+R+AYKLL+I EK QIL+    +VDLG++PGSWSQV
Sbjct: 6   TSKAWMKEHVNDFFVKQAKKEGYRSRAAYKLLEITEKDQILKPGLTVVDLGAAPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A+   G      +V+A+DIL+M P+ GV+F + DF +  +   +++ +G +  DLV+SDM
Sbjct: 66  ASHKIGRGG---KVIAVDILEMAPLPGVEFIQGDFREEYAIVELKKHLGNDQLDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G    D  R+M L E A  FALE LN GG+FLVK FQG   +  L  ++  F+ V
Sbjct: 123 SPNMSGIVISDQARSMYLAELALAFALEQLNYGGNFLVKVFQGRDFDQFLFDMRAGFKNV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
           I  KP ASR  S E++LL  G
Sbjct: 183 IIRKPKASRDRSNELYLLGLG 203


>gi|254491856|ref|ZP_05105035.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
           thiooxidans DMS010]
 gi|224463334|gb|EEF79604.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
           thiooxydans DMS010]
          Length = 205

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 125/211 (59%), Gaps = 8/211 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            K++S QG    WL  H +D YV++AQ EG R+R+ +KL +I++K ++L+    +VDLG+
Sbjct: 2   AKSKSSQG----WLKEHFDDQYVKKAQKEGHRSRATFKLDEIDQKDKLLRPGMSVVDLGA 57

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG WS  A R  G +     VVA+DIL M P+ GV F + DF + +  + + + + G  
Sbjct: 58  APGGWSDYAFRKVGDSGT---VVALDILPMTPLTGVHFIEGDFREDEVLDELNKVLNGRE 114

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLVLSDMA    G   ID   +M L E A  FA+  L+  G FLVK FQG   +  L  
Sbjct: 115 IDLVLSDMAPNMSGVGSIDQPASMYLVELALDFAVNNLSKQGCFLVKVFQGEGFDAYLKQ 174

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV+  KP ASRA S E++LL KG +
Sbjct: 175 MRDSFNKVVTRKPGASRARSREVYLLGKGLK 205


>gi|309782468|ref|ZP_07677192.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
           5_7_47FAA]
 gi|308918805|gb|EFP64478.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
           5_7_47FAA]
          Length = 221

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSW----EFIRQAIGGN 135
             ++  S  A + R    +VAIDIL ME I  V F + DF + D +    E + +A GG 
Sbjct: 67  RNKLAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDDVFRQLEEIVLEATGGG 126

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FA+  L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFKIVAPRKPKASRDKSSETFLLGRQLK 218


>gi|89365951|gb|AAI14515.1| FtsJ homolog 2 (E. coli) [Homo sapiens]
          Length = 246

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 128/217 (58%), Gaps = 9/217 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+ + R++D G
Sbjct: 23  RCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPSLRVLDCG 80

Query: 76  SSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIR 129
           ++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I 
Sbjct: 81  AAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRIL 140

Query: 130 QAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + + G   D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ G  
Sbjct: 141 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 200

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 201 SRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 237


>gi|119504342|ref|ZP_01626422.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
           proteobacterium HTCC2080]
 gi|119459850|gb|EAW40945.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
           proteobacterium HTCC2080]
          Length = 208

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/211 (39%), Positives = 125/211 (59%), Gaps = 7/211 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           VK RS   SSR WL  H  D YVQRA  EG+R+R+ YKL +IN++ ++++    ++DLG+
Sbjct: 2   VKKRS---SSRAWLKEHREDLYVQRAVKEGYRSRACYKLKEINDRDRVIKPGMTVLDLGA 58

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG WSQVA  + G+     RV+A DIL M+ +  V+F   DF +   +E +   +G + 
Sbjct: 59  APGGWSQVAVEMVGARG---RVIASDILPMDSLADVEFILGDFTEEAVFEALLNLLGESA 115

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R+M L E A   A + L  GG  + K FQG     ++  
Sbjct: 116 VDVVLSDMAPNMSGVSAVDQPRSMYLVELALDLATQTLEKGGTLVSKVFQGEGFEAVMST 175

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +++F +V+  KP ASR  S E++L+A GF+
Sbjct: 176 ARQNFDRVLTRKPEASRPRSREVYLVASGFK 206


>gi|54112769|gb|AAV29018.1| NT02FT0627 [synthetic construct]
          Length = 206

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 2   SIGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATEFK 205


>gi|30248542|ref|NP_840612.1| FtsJ cell division protein [Nitrosomonas europaea ATCC 19718]
 gi|81436182|sp|Q820A2|RLME_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|30138428|emb|CAD84438.1| FtsJ cell division protein [Nitrosomonas europaea ATCC 19718]
          Length = 206

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 116/199 (58%), Gaps = 4/199 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +SR W+  HIND +V++A  EG+R+R+AYKL +I E   +      +VDLG+ PGSWSQV
Sbjct: 6   TSRAWIKAHINDNFVRKANHEGYRSRAAYKLREIAEHDALFVPGMTVVDLGAVPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           A    G      +V A+D+LDM+P+ G+ F + DF + +    +  A+GG   DLV+SDM
Sbjct: 66  ALESVGPTG---KVFALDMLDMQPLPGMTFIQGDFRENEVLAMLEAALGGKRADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G R  D  + M L E A  F  E LN G +FLVK FQG        +++  F KV
Sbjct: 123 SPNLTGIRVSDQAQGMYLAELALIFCREHLNPGKNFLVKVFQGSDFEAFRQMMQTDFSKV 182

Query: 204 IHVKPVASRAESVEMFLLA 222
           +  KP ASR  S E++LL 
Sbjct: 183 VIRKPKASRDRSKELYLLG 201


>gi|301631567|ref|XP_002944869.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Xenopus
           (Silurana) tropicalis]
          Length = 246

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 8/227 (3%)

Query: 9   SRRGLTQKVK-NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           SRR L      ++S   + + WL R + DPYV+ AQ   +R RSA+KLL+I+ KH ILQ 
Sbjct: 17  SRRSLHVTCALDKSRTAAEQRWLARQMKDPYVREAQTHNYRCRSAFKLLEIDNKHHILQP 76

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLD 121
              ++D G++PG+WSQVA     S   ++      VV +D+L++ P+ G  F    D  D
Sbjct: 77  GHHVIDCGAAPGAWSQVAVEKVNSLGRDSAASAGFVVGVDLLNIAPLDGAVFLSNSDITD 136

Query: 122 LDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
            D+ + I   +  G  D++LSDMA    G R +DH R +++C +    +  +L  GG FL
Sbjct: 137 FDTQKKIISVLPSGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSERVLLSGGTFL 196

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K + G   N +   L++ FQ V  VKP ASR ES E++LLAK  R+
Sbjct: 197 CKVWDGSEINLVRDRLRQRFQDVRTVKPKASRMESAEVYLLAKLHRQ 243


>gi|90652009|gb|AAI14565.1| FTSJ2 protein [Homo sapiens]
          Length = 240

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 127/217 (58%), Gaps = 9/217 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G
Sbjct: 17  RCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCG 74

Query: 76  SSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIR 129
           ++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I 
Sbjct: 75  AAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRIL 134

Query: 130 QAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + + G   D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ G  
Sbjct: 135 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 194

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 195 SRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 231


>gi|330813886|ref|YP_004358125.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486981|gb|AEA81386.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 208

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 125/207 (60%), Gaps = 5/207 (2%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +K + ++   SS+ WL R +NDP V  A+ + +R+R+ +K L+INEKHQ L++N  I+DL
Sbjct: 2   KKFQKKNLSHSSKLWLTRQLNDPLVAEAKKQNYRSRAIFKFLEINEKHQFLKNNLNIIDL 61

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIG 133
           G++PGSWSQ  ++I     N    +A+D+LD +PI   K  K DF  D    + +    G
Sbjct: 62  GAAPGSWSQHTSKINKDGVN----IALDLLDTKPINNCKIIKGDFTSDEVQNKLVNLLEG 117

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D+VLSD+A  + G+R +D +R+  +      F+L+ L   G  L+KTF G    +++
Sbjct: 118 KKFDIVLSDIAENSTGNRSLDSMRSNIITVEVMKFSLKHLKKNGKILIKTFSGVGNEEVV 177

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFL 220
            + KK+F K I +KP +SR +S E++L
Sbjct: 178 DMAKKNFSKHIFIKPKSSRKDSKELYL 204


>gi|167626618|ref|YP_001677118.1| ribosomal RNA large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189040691|sp|B0TZQ8|RLME_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|167596619|gb|ABZ86617.1| ribosomal RNA large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 206

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +++ W+  H +D YV +A   G+R+R+++K+++I +K+ + + N  I+DLG++PG WS+ 
Sbjct: 6   TTKKWIQDHTSDYYVLQANKLGYRSRASFKIIEIQDKYNLFKQNMFIIDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G   NN +++A+D+L+M PI GV+F + +F   +++E + Q I     D V+SDM
Sbjct: 66  VVKFIG---NNGKLIALDLLEMAPIAGVEFIQGNFSSDETYERLNQLINDKKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  R++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQARSIHLLELALDFATTNLNRNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR +S E +++A GF+
Sbjct: 183 TQFKPKSSRPKSREFYVVATGFK 205


>gi|241663317|ref|YP_002981677.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
 gi|240865344|gb|ACS63005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
          Length = 221

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSW----EFIRQAIGGN 135
             ++  S  A + R    +VAIDIL ME I  V F + DF + D +    E + +A GG 
Sbjct: 67  RNKLAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDDVFRQLEEIVLEATGGG 126

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FA+  L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFRIVAPRKPKASRDKSSETFLLGRQLK 218


>gi|56708013|ref|YP_169909.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670484|ref|YP_667041.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134302197|ref|YP_001122166.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931311|ref|YP_001891295.1| 23S rRNA methylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|208780502|ref|ZP_03247842.1| ribosomal RNA large subunit methyltransferase J [Francisella
           novicida FTG]
 gi|224457094|ref|ZP_03665567.1| 23S rRNA methylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254368671|ref|ZP_04984685.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica FSC022]
 gi|254370496|ref|ZP_04986501.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874812|ref|ZP_05247522.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597551|sp|Q5NGD3|RLME_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123359494|sp|Q14HT5|RLME_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513855|sp|A4IYP4|RLME_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703306|sp|B2SF85|RLME_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56604505|emb|CAG45545.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320817|emb|CAL08928.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134049974|gb|ABO47045.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568739|gb|EDN34393.1| hypothetical protein FTBG_00272 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|157121586|gb|EDO65763.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica FSC022]
 gi|187712220|gb|ACD30517.1| 23S rRNA methylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|208743648|gb|EDZ89952.1| ribosomal RNA large subunit methyltransferase J [Francisella
           novicida FTG]
 gi|254840811|gb|EET19247.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 206

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 183 IQFKPKSSRAKSREFYVIATEFK 205


>gi|118602395|ref|YP_903610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|143461559|sp|A1AW32|RLME_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|118567334|gb|ABL02139.1| 23S rRNA Um-2552 2'-O-methyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 207

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 4/205 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           +GSS  W++ HIND +V++AQ  G+R+RS YKL+++  K + ++   +++DLG++PG WS
Sbjct: 4   KGSSGRWMSEHINDEFVKKAQKSGYRSRSVYKLIEVINKDKFIKLGDKVLDLGAAPGGWS 63

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLS 141
           QVA +I G +    +V+A DILD++PI GV F + DF     +E  +   +    D+VLS
Sbjct: 64  QVAIKIVGKSG---QVIASDILDIKPIDGVDFLRGDFTKDSVYETLLDITMSKKVDVVLS 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   ID  ++M LCE A   A++ L   G F VK FQG   N+ + L +  F 
Sbjct: 121 DMAPNMSGQSSIDIPKSMYLCELALDMAIKTLTPLGYFFVKVFQGNGFNEFVKLCRSSFS 180

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP AS+  S E++LL    +
Sbjct: 181 FVTIRKPKASKLRSKEVYLLTSKLK 205


>gi|7019377|ref|NP_037525.1| putative ribosomal RNA methyltransferase 2 [Homo sapiens]
 gi|9910866|sp|Q9UI43|RRMJ2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase 2; AltName:
           Full=Protein ftsJ homolog 2; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase
 gi|6652820|gb|AAF22488.1|AF093415_1 cell division protein FtsJ [Homo sapiens]
 gi|119607629|gb|EAW87223.1| hCG17134, isoform CRA_b [Homo sapiens]
 gi|119607630|gb|EAW87224.1| hCG17134, isoform CRA_b [Homo sapiens]
          Length = 246

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 127/217 (58%), Gaps = 9/217 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G
Sbjct: 23  RCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCG 80

Query: 76  SSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIR 129
           ++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I 
Sbjct: 81  AAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRIL 140

Query: 130 QAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + + G   D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ G  
Sbjct: 141 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 200

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 201 SRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 237


>gi|282159201|gb|ADA78592.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 206

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTFVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 183 IQFKPKSSRAKSREFYVIATEFK 205


>gi|254373876|ref|ZP_04989358.1| ribosomal large subunit methyltransferase J [Francisella novicida
           GA99-3548]
 gi|151571596|gb|EDN37250.1| ribosomal large subunit methyltransferase J [Francisella novicida
           GA99-3548]
          Length = 206

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 183 IQFKPKSSRAKSREFYVVATEFK 205


>gi|146329213|ref|YP_001210115.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|158513305|sp|A5EXB6|RLME_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146232683|gb|ABQ13661.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 210

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D +V +A+ EG+R+R+ YKL +I EK +I++ N  +V+LG++PG WSQ 
Sbjct: 6   SSGRWLKEHHSDVFVLKAREEGFRSRAVYKLKEIQEKDRIIRPNMTVVELGAAPGGWSQY 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN-PDLVLSD 142
            A I        R++A+DIL M+ +  V F + DF +      +   IG GN  DLV+SD
Sbjct: 66  VAGILNGRG---RMIALDILPMDALPDVHFIQGDFREETVLNALYDIIGEGNYVDLVISD 122

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA  T G + +D  R+M L E A  FA E L  GGDFL K F G   + +   LK  F  
Sbjct: 123 MAPNTSGIKSVDQARSMHLVELAADFAQERLVAGGDFLCKVFHGAGFDALFQHLKTQFST 182

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V+  KP ASRA S E +LLA+GF
Sbjct: 183 VLTRKPQASRARSQETYLLARGF 205


>gi|303256870|ref|ZP_07342884.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
           bacterium 1_1_47]
 gi|330998881|ref|ZP_08322608.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
           excrementihominis YIT 11859]
 gi|302860361|gb|EFL83438.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
           bacterium 1_1_47]
 gi|329576095|gb|EGG57614.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
           excrementihominis YIT 11859]
          Length = 214

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 124/201 (61%), Gaps = 3/201 (1%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAAR 87
           W+ RH+ DP+V+++  EG+RARS YKL++I++K +I++    +VDLG++PGSW+Q V  R
Sbjct: 14  WIKRHLTDPFVKKSVQEGYRARSVYKLMEIDDKDKIIKPGMSVVDLGAAPGSWTQIVKER 73

Query: 88  ITGSNAN-NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAY 145
           +T  +   + +V+A+DIL MEPI GV F + DF + +  + +   + G   D+VLSDMA 
Sbjct: 74  LTDKDGKIDGKVIAMDILPMEPIEGVHFLQGDFREQEVADKLTDLLEGEKVDVVLSDMAP 133

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G    D  R + L E A  FA E L   G F+ K FQG   +  +   KK F+KV  
Sbjct: 134 NLSGVAAADAARCLLLNELALDFAKENLKKNGSFVCKVFQGSGYSQYVEACKKTFRKVSV 193

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP ASR+ S E++++A+  +
Sbjct: 194 RKPEASRSSSAEVYIVARDLK 214


>gi|156549827|ref|XP_001607570.1| PREDICTED: similar to GA11008-PA, partial [Nasonia vitripennis]
          Length = 230

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 124/209 (59%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+R   DPYV++A+ E +R RSA+KLL+IN KH+IL     +VD G++PGSW+QV
Sbjct: 14  SSQQWLSRQFKDPYVEKARQENYRCRSAFKLLEINRKHRILSPGLHVVDCGAAPGSWTQV 73

Query: 85  AARITGSNANNT-----RVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN-PD 137
           A ++T S+         +V+AID L + PI G   +   DF   D+   ++ A+GG   +
Sbjct: 74  ATQLTNSHGKMLGEQVGKVIAIDKLPIHPIEGATVYGNLDFTTEDAQNILKAALGGKFVE 133

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G R +DH   + L   A  FA+E+    G F+VK + G     +   L 
Sbjct: 134 VVMSDMAPNASGVRDLDHENIIKLAYMAFKFAIEVSCYEGTFIVKVWDGHKCPKLEEDLA 193

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F+ V   +P A+R ES E F++A+GF+
Sbjct: 194 RFFRNVKIARPQATRDESSEKFIIARGFK 222


>gi|156084518|ref|XP_001609742.1| ribosomal RNA large subunit methyltransferase J protein [Babesia
           bovis T2Bo]
 gi|154796994|gb|EDO06174.1| ribosomal RNA large subunit methyltransferase J protein, putative
           [Babesia bovis]
          Length = 237

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 124/211 (58%), Gaps = 2/211 (0%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KV+N +   S+ +W+ R I D Y ++AQ++ +R+R+AYKL ++++++ + + N+ IV+LG
Sbjct: 5   KVRNPATTHSA-EWIRRQITDHYTKKAQVDQYRSRAAYKLQELDDRYLLFRKNQIIVELG 63

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GG 134
             PG W+QV    + + A+N++V+ ID L M+ I    F K D  D  +   +  A+ G 
Sbjct: 64  CYPGGWAQVCLERSLTGASNSKVIGIDRLHMDHIANYDFIKGDINDQSTQAQLFSALQGA 123

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSD+A    G ++ DHL +  LC  A      ++ + G F+VK F GG  N+   
Sbjct: 124 KADLVLSDLAPSCTGIKQDDHLNSTELCMQAAALMERIIAVNGSFVVKIFMGGQLNNYRT 183

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F  V   KP ASR+ES EM+ + KGF
Sbjct: 184 YLQSQFNTVHSAKPQASRSESREMYFVCKGF 214


>gi|62263595|gb|AAX78175.1| unknown protein [synthetic construct]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG WS+ 
Sbjct: 32  STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQ 91

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 92  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCVISDM 148

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 149 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 208

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 209 IQFKPKSSRAKSREFYVIATEFK 231


>gi|71899230|ref|ZP_00681392.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
 gi|71730963|gb|EAO33032.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
          Length = 213

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DP+V++AQ EG R+R+AYKL +I ++ +IL+ N  +VDLG++PG WSQ 
Sbjct: 6   SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVVDLGAAPGGWSQ- 64

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +I     ++ RV+A+DI+ M P++G++F + DF D      +   + G P DLVLSDM
Sbjct: 65  --QIRKQMGDSGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQPVDLVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   +  GG FL+K F G  ++  +  L+  ++KV
Sbjct: 123 APNKSGIDVMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDGYIRQLRHRYKKV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              KP+ASR  S E+++L  G
Sbjct: 183 AIRKPLASRKRSPEVYILGDG 203


>gi|299066492|emb|CBJ37682.1| 23S rRNA methyltransferase [Ralstonia solanacearum CMR15]
          Length = 221

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 125/212 (58%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GG 134
             ++  S  A + R    +VAIDIL MEP+  V F + DF +   ++ +   +     GG
Sbjct: 67  RNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQELEAIVLDATGGG 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FA   L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|17546244|ref|NP_519646.1| ribosomal RNA large subunit methyltransferase J [Ralstonia
           solanacearum GMI1000]
 gi|81505141|sp|Q8XZ79|RLME_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|17428541|emb|CAD15227.1| probable ribosomal rna large subunit methyltransferase j (cell
           division protein ftsj) [Ralstonia solanacearum GMI1000]
          Length = 221

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 125/212 (58%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GG 134
             ++  S  A + R    +VAIDIL MEP+  V F + DF +   ++ +   +     GG
Sbjct: 67  RNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQQLETIVLDATGGG 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FA   L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|118497045|ref|YP_898095.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. novicida U112]
 gi|194324280|ref|ZP_03058054.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. novicida FTE]
 gi|143460128|sp|A0Q526|RLME_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|118422951|gb|ABK89341.1| 23S rRNA methylase [Francisella novicida U112]
 gi|194321727|gb|EDX19211.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. novicida FTE]
 gi|328676509|gb|AEB27379.1| Cell division protein ftsJ / Ribosomal RNA large subunit
           methyltransferase J [Francisella cf. novicida Fx1]
          Length = 206

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I  K+Q+ + N  +VDLG++PG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQNKYQLFKPNMFVVDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 183 IQFKPKSSRAKSREFYVIATEFK 205


>gi|307174434|gb|EFN64935.1| Putative ribosomal RNA methyltransferase CG11447 [Camponotus
           floridanus]
          Length = 246

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R I DPYV++A+ E +R RSA+KLLQINEK++I      ++D G++PGSW+QV
Sbjct: 34  SSQLWLMRQIRDPYVEKAKQENYRCRSAFKLLQINEKYKIFCPGLTVIDCGAAPGSWTQV 93

Query: 85  AARITGSNANNT----RVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPDL 138
           A  +T S+A +     +V AID L   P+ G       DF    + E +   + G   D+
Sbjct: 94  ATNLTNSHAKSQGPIGKVYAIDKLPFFPVEGATVLGNMDFTITKTQETLLALLQGKKADV 153

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VLSDMA    G R IDH   + L  AA  FAL++  I G  ++K + GG + ++   L +
Sbjct: 154 VLSDMAPNASGIRAIDHDNIILLAYAALKFALQITKIHGTLVIKVWDGGKSQELEQNLLR 213

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  V  VKP A+R ES E F LA+GF+
Sbjct: 214 FYNNVKIVKPDATRDESTEKFFLARGFK 241


>gi|237745683|ref|ZP_04576163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes HOxBLS]
 gi|229377034|gb|EEO27125.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes HOxBLS]
          Length = 215

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           ++ W+  H++DP+V+ AQ EG+RAR+ YKL +I+E  ++++  + IVDLG +PGSWSQ  
Sbjct: 7   NKSWMRNHLDDPFVKLAQKEGYRARAVYKLSEIDENAKLVRPGQVIVDLGCAPGSWSQYI 66

Query: 86  ARITGSNAN---NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           AR  G       N  +V +DIL MEP+ GV F + DF +      +   + G   DLVLS
Sbjct: 67  ARKLGGQGGHPVNGTIVGLDILPMEPVEGVHFLQGDFREESVLHELEALLEGRQVDLVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   L + A  FA   L   G  LVK F G T N+IL   ++ F 
Sbjct: 127 DMAPNLSGIASADAARVEYLMDLALEFAQAHLKPSGSLLVKCFNGSTYNEILKKFRETFV 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V  VKP ASR  S EMFLL +  R
Sbjct: 187 TVTPVKPKASRNYSSEMFLLGRQLR 211


>gi|254372405|ref|ZP_04987895.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570133|gb|EDN35787.1| ribosomal large subunit methyltransferase J [Francisella novicida
           GA99-3549]
          Length = 206

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  ++DLG++PG WS+ 
Sbjct: 6   STKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVIDLGAAPGGWSEQ 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V+SDM
Sbjct: 66  VIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ F KV
Sbjct: 123 APNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRESFNKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP +SRA+S E +++A  F+
Sbjct: 183 IQFKPKSSRAKSREFYVVATEFK 205


>gi|83644093|ref|YP_432528.1| 23S rRNA methylase [Hahella chejuensis KCTC 2396]
 gi|123534482|sp|Q2SMM1|RLME_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83632136|gb|ABC28103.1| 23S rRNA methylase [Hahella chejuensis KCTC 2396]
          Length = 206

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 124/203 (61%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WLN H +D YV++++ +G+R+R++YKL++++ + ++L+    ++DLG++PG WSQV
Sbjct: 6   SSSRWLNEHHSDVYVKKSKEDGFRSRASYKLIELDRQDKLLRPGMTVIDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            A + G   +  +VVA D+L M+ I GV FF+ DF + +  + I   +   P DLV+SDM
Sbjct: 66  VADVVG---DQGKVVACDLLSMDSIAGVTFFQGDFTEDEMLDAILNEVNSRPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G + +D  + M L E A   A  +L   G F+ K FQG   + IL   +  F  V
Sbjct: 123 APNMSGMKSVDIPKAMYLVELALDLACRVLKKNGCFVAKVFQGEGFDQILQESRGRFSSV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASRA S E++L+AKGFR
Sbjct: 183 NIRKPDASRARSREIYLVAKGFR 205


>gi|143459181|sp|A1W8H0|RLME_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 220

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 126/208 (60%), Gaps = 6/208 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLGSSPG+WSQ V
Sbjct: 11  NKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYV 70

Query: 85  AARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
             R++   A     N  ++A+DIL MEPI GV F + DF + +    +++A+   P D+V
Sbjct: 71  RRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLAGLQEAVQARPVDVV 130

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D +R   L E A  FA+  L   G  +VK F G   + ++ L K  
Sbjct: 131 VSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDT 190

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F+ V  +KP ASR +S E FL+  G ++
Sbjct: 191 FRVVKPMKPKASRDKSSETFLVGMGLKR 218


>gi|153209329|ref|ZP_01947348.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           'MSU Goat Q177']
 gi|165924044|ref|ZP_02219876.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 334]
 gi|212218759|ref|YP_002305546.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuK_Q154]
 gi|226703291|sp|B6J802|RLME_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120575400|gb|EAX32024.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           'MSU Goat Q177']
 gi|165916503|gb|EDR35107.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 334]
 gi|212013021|gb|ACJ20401.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 212

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 128/205 (62%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H  DPYV+RA+ EG+ +R+AYKLL+I++K+++ + +  ++DLG++PG WSQVA
Sbjct: 4   SKRWLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFI--RQAIGGNPDLVL 140
             + G       V+AID+L ++ +L V F + DF +    +  E I  ++ + G  DLV+
Sbjct: 64  KDLVGPKG---VVIAIDLLPIQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTGQVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G + +D  R++ L E A   A ++L  GG FLVK FQG   +  L  L+ +F
Sbjct: 121 SDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V  +KP ASR+ S E+++LA  F
Sbjct: 181 NQVKFLKPSASRSRSSEIYILAGEF 205


>gi|28198008|ref|NP_778322.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182680634|ref|YP_001828794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa M23]
 gi|81439222|sp|Q87F66|RLME_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705324|sp|B2I696|RLME_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|28056068|gb|AAO27971.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182630744|gb|ACB91520.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa M23]
 gi|307579093|gb|ADN63062.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 213

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +DP+V++AQ EG R+R+AYKL +I ++ +IL+ N  ++DLG++PG WSQ 
Sbjct: 6   SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPGGWSQ- 64

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             +I     ++ RV+A+DI+ M P++G++F + DF D      +   + G P DLVLSDM
Sbjct: 65  --QIRKQMGDSGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQPVDLVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   +  GG FL+K F G  ++  +  L+  ++KV
Sbjct: 123 APNKSGIDVMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDGYIRQLRHRYKKV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              KP+ASR  S E+++L  G
Sbjct: 183 AIRKPLASRKRSPEVYILGDG 203


>gi|285017954|ref|YP_003375665.1| cell division protein ftsj (rrna (uridine) methyltransferase
           activity ) [Xanthomonas albilineans GPE PC73]
 gi|283473172|emb|CBA15678.1| probable cell division protein ftsj (rrna (uridine)
           methyltransferase activity ) [Xanthomonas albilineans]
          Length = 219

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  DP+V++AQ EG R+R+AYKL ++ ++ ++L+ +  +VDLG++PG WSQ 
Sbjct: 16  SSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPDMVVVDLGAAPGGWSQ- 74

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
             ++  S  +  RV+A+DIL+M P+ GV+F   DF +      +   +G    DLVLSDM
Sbjct: 75  --QVRKSMGDRGRVLALDILEMPPLAGVEFLHGDFREEAVLSQLEAMLGETAVDLVLSDM 132

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  FA   L   G FL+K FQG   +D +  +++ ++KV
Sbjct: 133 APNKSGMDAVDQPRMMHLAELAMAFADSHLKPNGVFLIKLFQGVGFDDYIRAMRRRYEKV 192

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++ L +G R
Sbjct: 193 TIRKPAASRKRSPEVYALGQGKR 215


>gi|126334424|ref|XP_001379067.1| PREDICTED: similar to cell division protein FtsJ [Monodelphis
           domestica]
          Length = 301

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 127/215 (59%), Gaps = 7/215 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           ++R    +   WL RH+ DP+V+ A++E +R RSA+KLL+INEKHQI     R++D G++
Sbjct: 78  RHRGKTATEHLWLTRHLKDPFVKAAKVENYRCRSAFKLLEINEKHQIFHPGLRVLDCGAA 137

Query: 78  PGSWSQVA-----ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQA 131
           PG+WSQVA     A  T  N++   V+ +D+L + P+ G  F    D  D  +++ I++ 
Sbjct: 138 PGAWSQVAVQKVNAAGTDPNSSVGFVLGVDLLHIFPLEGAIFLCPADVTDSRTFDKIQEQ 197

Query: 132 IGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           + G   D++LSDMA    G R++DH   +S+C +   F   +L  GG FL K + G   +
Sbjct: 198 LPGQKADVILSDMAPNATGIRELDHQNLISMCLSLLNFTSSILLPGGTFLCKFWDGSQRH 257

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +   L+K FQ V  +KP ASR ES E + LAK +
Sbjct: 258 LLQNRLEKEFQNVRTIKPKASRKESSETYFLAKSY 292


>gi|71279764|ref|YP_270127.1| 23S rRNA methyltransferase J [Colwellia psychrerythraea 34H]
 gi|83305657|sp|Q47YJ3|RLME_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71145504|gb|AAZ25977.1| ribosomal RNA large subunit methyltransferase J [Colwellia
           psychrerythraea 34H]
          Length = 209

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 126/209 (60%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+  + SS+ WL+ H +D YV++AQ  G R+R+ +KL +IN K ++++   ++VDLG++P
Sbjct: 3   NKKHKASSQRWLDEHFDDEYVKKAQRLGLRSRAVFKLEEINIKDRLIKPGMKVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WS+ A ++ G   +  +VVA DIL M+ I+GV F + DF + +  + +   I G N D
Sbjct: 63  GGWSEYAVKVVG---DKGQVVACDILPMDAIVGVDFLEGDFREEEVLDALLTRINGKNID 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G+   D  R+M L E A     ++L   G F+VK FQG    D +   +
Sbjct: 120 VVMSDMAANMTGNESADSARSMYLVELALDMCSQVLKPNGAFVVKVFQGAGFEDYMKATR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP +SRA S E++L+A G++
Sbjct: 180 AVFKAVKTRKPESSRARSREVYLVATGYK 208


>gi|254427497|ref|ZP_05041204.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
           DG881]
 gi|196193666|gb|EDX88625.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
           DG881]
          Length = 208

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H NDP+V +AQ +G+R+R+++KLL+++EK ++ +    ++DLG++PG WSQV
Sbjct: 9   TSKAWLKEHFNDPWVAKAQEQGYRSRASFKLLEMHEKDRLFRPGMTVLDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A ++ G       V+A DIL M+ +  V F + DF +   +E I  ++G    DLV+SDM
Sbjct: 69  AGQLIGGKGT---VIASDILAMDALPDVTFIEGDFREDAIYEQILASLGDRRADLVMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G+  +D  R M L E A   A  +L   G FLVK FQG    D    L+  F++V
Sbjct: 126 APNMSGNSAVDQPRAMYLAELALDMAERVLEPDGLFLVKVFQGEGFEDYRKALQSRFKRV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASRA S E++ L  G +
Sbjct: 186 VSRKPAASRARSTEVYQLGFGLK 208


>gi|301791140|ref|XP_002930562.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
           [Ailuropoda melanoleuca]
          Length = 246

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T    ++   G+   WL RH+ DP+V+ A++E +R RSA+KLL+++E+H IL+   
Sbjct: 15  RRFHTAGSHSKGRTGAEHLWLTRHLKDPFVKAAKMESYRCRSAFKLLEVDERHGILRPGL 74

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLD 123
           R++D G++PG+WSQVA +   +   + R     V+ +D+L + P+ G  F    D  D  
Sbjct: 75  RVLDCGAAPGAWSQVAVQRVNAAGTDPRAPVGFVLGVDLLHISPLEGATFLCPADVTDPR 134

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + I++ + GG  D++LSDMA    G R +DH R + LC +    A  +L+ GG FL K
Sbjct: 135 TLQRIQELLPGGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDTAPHVLHPGGTFLCK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            + G  +      L   FQ    VKP ASR ES E++LLA  +++
Sbjct: 195 MWAGSQSLAYQKRLTGQFQNTRTVKPRASRKESSEVYLLATQYQR 239


>gi|332027855|gb|EGI67913.1| Putative ribosomal RNA methyltransferase [Acromyrmex echinatior]
          Length = 246

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R + DPYV++A+ E +R RSA+KLL+INE+ +IL     +VD G++PGSW+QV
Sbjct: 34  SSQLWLERQLRDPYVEKAKQEKYRCRSAFKLLEINERFKILSPGLTVVDCGAAPGSWTQV 93

Query: 85  AARITGSNANNT----RVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-DL 138
           A  +T +         RV A+D L   P+ G       DF ++ + E + + + G+  D+
Sbjct: 94  ATNLTNAGGKKEGPVGRVYAVDKLPFYPVEGATVLGNMDFTNIKTQETLSKLLQGDKVDV 153

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VLSDMA    G R+IDH   M L  AA  FAL++  +   F+VK + GG T      L K
Sbjct: 154 VLSDMAPNASGVREIDHDNIMLLAYAALRFALQISKVQSTFVVKIWDGGKTQQFEQNLLK 213

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  V  ++P A+R ES E F LA+ F+
Sbjct: 214 FYNSVRAIRPDATRDESTETFFLARRFK 241


>gi|149909287|ref|ZP_01897943.1| ribosomal RNA large subunit methyltransferase J [Moritella sp.
           PE36]
 gi|149807604|gb|EDM67552.1| ribosomal RNA large subunit methyltransferase J [Moritella sp.
           PE36]
          Length = 214

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 125/216 (57%), Gaps = 5/216 (2%)

Query: 13  LTQKVKNRSCQ-GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           +T   K +S Q GSS++WL  H ND YV+ A+ +G R+R+ +KL +I  K ++LQ    I
Sbjct: 1   MTPTPKKKSTQKGSSKNWLLEHHNDKYVKDAKKQGLRSRATFKLEEIQAKDKLLQPGMNI 60

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG++PG WSQ A +  G   +  RV+A DIL M+PI GV F + DF D      +   
Sbjct: 61  VDLGAAPGGWSQFAVKHLG---DKGRVIACDILPMDPIAGVDFLQGDFRDEKVLSALLAK 117

Query: 132 IG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +G G  D+V+SDMA    G+  +D   +M L E A     E+L   G F+VK FQG    
Sbjct: 118 VGDGKIDVVVSDMAPNMSGNIGVDQPASMYLVELALEMCREVLKPNGSFVVKVFQGEGFE 177

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +  ++  F  V   KP +SRA S E+F++AKG++
Sbjct: 178 QYMKDVRSMFNVVKTRKPDSSRARSREVFIVAKGYK 213


>gi|113969362|ref|YP_733155.1| 23S rRNA methyltransferase J [Shewanella sp. MR-4]
 gi|117919471|ref|YP_868663.1| 23S rRNA methyltransferase J [Shewanella sp. ANA-3]
 gi|123325253|sp|Q0HLG9|RLME_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143461679|sp|A0KTY8|RLME_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|113884046|gb|ABI38098.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. MR-4]
 gi|117611803|gb|ABK47257.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. ANA-3]
          Length = 209

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL ++ EK Q+++    +VDLG++PG WSQ
Sbjct: 8   ASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDQLIRPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           +A ++TG   +  +V+A DIL M+PI+GV F + DF +    E +   +G +  D+VLSD
Sbjct: 68  IAVKLTG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K  F+ 
Sbjct: 125 MAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKDAFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|146182230|ref|XP_001024178.2| FtsJ-like methyltransferase family protein [Tetrahymena
           thermophila]
 gi|146143910|gb|EAS03933.2| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
           SB210]
          Length = 604

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 120/206 (58%), Gaps = 1/206 (0%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ W+  H+ D YV++AQ + +R+R++YKL++I E+++I +  +++++LGS+PG 
Sbjct: 33  SKTKSSKMWMQEHVTDEYVKKAQKDNYRSRASYKLIEIQERYKIFKQGQKVLELGSAPGG 92

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           W+QVA   T SN     V+AID   M+P+ G  F++ D  D  +  +I +     P D+V
Sbjct: 93  WTQVAVEFTKSNEKKPTVLAIDRDFMDPVQGAVFYQGDINDKKTQVYIPEFFKLEPVDIV 152

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    DHL    L         + L IGG  ++KT  G    D+  + K +
Sbjct: 153 ISDMAPNFSGDLDQDHLLIQDLNNMTIDVCTKNLKIGGTVVMKTLNGTLEKDVFRMYKIY 212

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F++ + VKP ASRA S E++ L KG+
Sbjct: 213 FKEFLRVKPRASRARSSELYYLGKGY 238


>gi|109065839|ref|XP_001086161.1| PREDICTED: putative ribosomal RNA methyltransferase 2 isoform 2
           [Macaca mulatta]
          Length = 246

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 128/218 (58%), Gaps = 9/218 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           + KNR+  G+   WL RH+ DP+V+ A++  +R RSA+KLL++NE+HQIL+   R++D G
Sbjct: 23  RCKNRT--GAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCG 80

Query: 76  SSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIR 129
           ++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I 
Sbjct: 81  AAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRIL 140

Query: 130 QAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + + GG  D++LSDMA    G R +DH R +SLC        ++L   G FL KT+ G  
Sbjct: 141 EVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQ 200

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ +   L + FQ V  +KP ASR ES E++ LA  ++
Sbjct: 201 SHRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQ 238


>gi|187929109|ref|YP_001899596.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
 gi|226705302|sp|B2UGQ0|RLME_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|187725999|gb|ACD27164.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
          Length = 221

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 126/212 (59%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GG 134
             ++  S  A + R    +VAIDIL ME I  V F + DF + + +  + + +     GG
Sbjct: 67  RNKLAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDEVFRQLEEIVLEVSGGG 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FA+  L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFKIVAPRKPKASRDKSSETFLLGRQLK 218


>gi|270158120|ref|ZP_06186777.1| putative ribosomal RNA large subunit methyltransferase J
           [Legionella longbeachae D-4968]
 gi|289163615|ref|YP_003453753.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella longbeachae NSW150]
 gi|269990145|gb|EEZ96399.1| putative ribosomal RNA large subunit methyltransferase J
           [Legionella longbeachae D-4968]
 gi|288856788|emb|CBJ10599.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella longbeachae NSW150]
          Length = 206

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 126/206 (61%), Gaps = 12/206 (5%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ- 83
           SS+ WL  H +D YV++AQ EG+R+R+ YKL ++++K  +L+    +VDLG++PG W+Q 
Sbjct: 6   SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEVDDKESLLKPGMTVVDLGAAPGGWTQY 65

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLV 139
           V+ ++ G      R++A+DIL M+ +  V F   DF +    E +++ I   P    DL+
Sbjct: 66  VSEQLKGCG----RIIALDILPMDALPDVDFILGDFRE---EEVLQKLINLIPERSVDLL 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G + ID  R M L E A  FA +ML  GG  L+K F G   +D++   +  
Sbjct: 119 LSDMAPNMSGSKAIDIPRAMYLVELAFDFAEKMLKPGGAMLIKVFHGSGFDDLVKQARIS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP+ASRA S E +LLAKG+
Sbjct: 179 FEKVVIRKPMASRARSKETYLLAKGY 204


>gi|296080816|ref|NP_001171683.1| FtsJ homolog 2 [Sus scrofa]
 gi|197281890|gb|ACH57152.1| FtsJ-like protein 2 [Sus scrofa]
          Length = 245

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 127/205 (61%), Gaps = 7/205 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-R 87
           WL RH+ DP+V+ +++E +R RSA+KLL++NE+H+IL+   R++D G++PG+WSQVA  R
Sbjct: 34  WLARHLKDPFVKASKVESYRCRSAFKLLEMNERHRILRPGLRVLDCGAAPGAWSQVAVQR 93

Query: 88  ITGSNANNTR----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPDLVLS 141
           +  +  + T     V+ +D+L + P+ G  F    D  D  +++ IR  + GG  D++LS
Sbjct: 94  VNAAGTDATAPVGFVLGVDLLHILPLEGATFLCPADVTDPRTFQRIRDLLPGGKADVILS 153

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G R +DH R +SLC +    A ++L+  G FL K + G  ++ +   L + FQ
Sbjct: 154 DMAPNATGIRGLDHDRLISLCLSLLDMAPDVLHPRGAFLCKIWAGSQSHRLQKRLTEAFQ 213

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
               VKP ASR ES E++LLA  ++
Sbjct: 214 NTRTVKPAASRKESSELYLLATRYQ 238


>gi|94311127|ref|YP_584337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Cupriavidus
           metallidurans CH34]
 gi|143461257|sp|Q1LLA8|RLME_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|93354979|gb|ABF09068.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 221

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 122/209 (58%), Gaps = 11/209 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+++ +++Q  + IVDLG++PGSWSQ A
Sbjct: 7   NQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGSWSQYA 66

Query: 86  ARITGSN--ANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GG 134
                ++  A + R    VVAIDIL MEP+  V F + DF + + +  + Q +     G 
Sbjct: 67  RNKLAASPRAKDGRIDGAVVAIDILPMEPVADVTFIQGDFREEEVFRQLEQVVLDASGGS 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+ 
Sbjct: 127 RIDLVISDMAPNLSGVASADAARIEYLCDLALDFAQAHLKPEGSLLVKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAK 223
             K+ F+ V   KP ASR +S E F+L +
Sbjct: 187 KFKRQFKVVASRKPKASRDKSSETFILGR 215


>gi|54295625|ref|YP_128040.1| ribosomal RNA large subunit methyltransferase (cell division
           protein FtsJ) [Legionella pneumophila str. Lens]
 gi|81367654|sp|Q5WT13|RLME_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|53755457|emb|CAH16953.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella pneumophila str. Lens]
 gi|307611667|emb|CBX01358.1| ribosomal RNA large subunit methyltransferase [Legionella
           pneumophila 130b]
          Length = 206

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG+SPG W+Q 
Sbjct: 6   SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGASPGGWTQY 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSD 142
           A+ ++ GS     R+VA+DIL M+ +  V+F   DF + +   E I        DL+LSD
Sbjct: 66  ASEKMKGSG----RLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLLLSD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  F+K
Sbjct: 122 MAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARASFEK 181

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V+  KP ASR+ S E +LLAKG+
Sbjct: 182 VVIRKPSASRSRSKETYLLAKGY 204


>gi|241763937|ref|ZP_04761979.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
           2AN]
 gi|241366760|gb|EER61201.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
           2AN]
          Length = 220

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 7/217 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK +S +  ++ WLN H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KVKTQS-KKVNKAWLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGFTVVDLG 60

Query: 76  SSPGSWSQ-VAARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           S+PG+WSQ V  R++ + A     N  ++A+DIL MEP+ GV F   DF + +    + +
Sbjct: 61  STPGAWSQYVRRRLSPAGAAAGQLNGAIIALDILPMEPVEGVTFLHGDFREPEVLARLEE 120

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G   D+V+SDMA    G    D  R   L E A  FA   L   G  +VK F G   
Sbjct: 121 ALQGRTVDVVVSDMAPNLSGIESADAARIAHLVELAVDFACHHLKPEGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +++ L K+ F+ V  +KP ASR +S E FL+  G +
Sbjct: 181 GELVALFKRTFKTVKPLKPKASRDKSSETFLVGIGLK 217


>gi|281349747|gb|EFB25331.1| hypothetical protein PANDA_021048 [Ailuropoda melanoleuca]
          Length = 235

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T    ++   G+   WL RH+ DP+V+ A++E +R RSA+KLL+++E+H IL+   
Sbjct: 13  RRFHTAGSHSKGRTGAEHLWLTRHLKDPFVKAAKMESYRCRSAFKLLEVDERHGILRPGL 72

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLD 123
           R++D G++PG+WSQVA +   +   + R     V+ +D+L + P+ G  F    D  D  
Sbjct: 73  RVLDCGAAPGAWSQVAVQRVNAAGTDPRAPVGFVLGVDLLHISPLEGATFLCPADVTDPR 132

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + I++ + GG  D++LSDMA    G R +DH R + LC +    A  +L+ GG FL K
Sbjct: 133 TLQRIQELLPGGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDTAPHVLHPGGTFLCK 192

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            + G  +      L   FQ    VKP ASR ES E++LLA  +
Sbjct: 193 MWAGSQSLAYQKRLTGQFQNTRTVKPRASRKESSEVYLLATQY 235


>gi|291232361|ref|XP_002736125.1| PREDICTED: AGAP004177-PA-like [Saccoglossus kowalevskii]
          Length = 239

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 3/205 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL+R +NDPYV+RAQ+  +RARSA+KL++I++K+ IL+    ++D G++PG+W+QV
Sbjct: 34  SSQEWLSRQLNDPYVKRAQMGNYRARSAFKLIEIDDKYAILRPGSVVIDCGAAPGAWTQV 93

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE--FIRQAIGGNPDLVLSD 142
                 +     +V+++D+   +PI G          L+S +     Q      D+++SD
Sbjct: 94  TVERINAEGKG-QVISVDLKYFQPINGAVIIDQSDFTLESTQKLIFEQMQKNQADVIISD 152

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +DH   M LC+AA  FA ++L   G FL K ++GG +      L K F+ 
Sbjct: 153 MAPNASGMHAMDHENIMVLCQAAFGFAKQVLRNNGIFLCKLWEGGQSGKFKKDLAKTFKT 212

Query: 203 VIHVKPVASRAESVEMFLLAKGFRK 227
           V  VKP +SR +S EMF LA+GF +
Sbjct: 213 VKIVKPDSSRKDSAEMFFLARGFHR 237


>gi|300703813|ref|YP_003745415.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299071476|emb|CBJ42798.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
          Length = 221

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 124/212 (58%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYV 66

Query: 85  AARITGS-NANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GG 134
             ++  S  A + R    +VAIDIL MEP+  V F + DF +   +  +   +     GG
Sbjct: 67  RNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREEAVFRQLEAIVLDATGGG 126

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R   + E A  FA   L   G  L+K F G   + I+ 
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSGYSQIVE 186

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 187 MFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|295677139|ref|YP_003605663.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1002]
 gi|295436982|gb|ADG16152.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1002]
          Length = 220

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA-AR 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A  +
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69

Query: 88  ITGSNANNTR--------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
           + G +  N          ++A+DIL MEP+  V F + DF +      + + +G    DL
Sbjct: 70  LAGGSQRNAEREGGIDGTIIALDILPMEPVADVHFIQGDFREDSVLVQLEELVGARQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVAIADAARIEHLCDLALEFAQSHLKPDGALLVKCFHGSGYSQIVEKFKR 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  ++
Sbjct: 190 QFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|124266460|ref|YP_001020464.1| putative ribosomal RNA large subunit methyltransferase J
           [Methylibium petroleiphilum PM1]
 gi|158512857|sp|A2SF90|RLME_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|124259235|gb|ABM94229.1| putative ribosomal RNA large subunit methyltransferase J
           [Methylibium petroleiphilum PM1]
          Length = 224

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 12/222 (5%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK +S +  ++ WLN HINDPYV+ AQ EG+RAR+AYKL +I+E   +++  + +VDLG
Sbjct: 2   KVKTKS-KKVNKAWLNDHINDPYVKLAQKEGYRARAAYKLKEIDEALGLIKPGQVVVDLG 60

Query: 76  SSPGSWSQVAAR----------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           ++PG+WSQ   R             + A N R++A+D+LD EPI GV+F + DF D    
Sbjct: 61  AAPGAWSQYLRRRFAPKEAGTGGAAAGALNGRIIALDLLDFEPIEGVQFIQGDFHDEAVL 120

Query: 126 EFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
             +  AIGG   D+V+SDMA    G    D  R   L E A  FA   L+  G  + K F
Sbjct: 121 AELSAAIGGRGVDVVVSDMAPNLSGIASSDSARIALLVELAVEFAETHLHPHGALVCKVF 180

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            G   + ++ L KK F+ V  +KP ASR +S E FL+  G +
Sbjct: 181 HGSGHSQLVELFKKRFRVVKPIKPKASRDKSSETFLVGIGLK 222


>gi|291613528|ref|YP_003523685.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
           lithotrophicus ES-1]
 gi|291583640|gb|ADE11298.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
           lithotrophicus ES-1]
          Length = 206

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+NDPYVQ+AQ +G+R+R+AYKLL+I+E+  +++    +VDLG++PG W QV
Sbjct: 6   TSKQWMREHVNDPYVQQAQKDGYRSRAAYKLLEIDERDHLIKPGMVVVDLGATPGGWCQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            A   G+N    R++A+D+L + P+  V+F + DF +      + + + G    LV+SDM
Sbjct: 66  VANRLGANG---RIIALDLLPLNPLPRVEFIQGDFREDSVLAQLEEKLEGRQIGLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D  R M L E A  FA+E L  GG FLVK FQG    D L L++ +F KV
Sbjct: 123 APNISGVSSADQARAMHLAELALDFAVEHLAPGGSFLVKVFQGVGFEDYLKLMRSNFAKV 182

Query: 204 IHVKPVASRAESVEMFLLAKG 224
           +  KP ASR  S E +L+  G
Sbjct: 183 VARKPKASRDRSSEQYLVGLG 203


>gi|307824614|ref|ZP_07654838.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacter
           tundripaludum SV96]
 gi|307734268|gb|EFO05121.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacter
           tundripaludum SV96]
          Length = 205

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H  D YV+ AQ +G+R+R+ +KL +I +K Q+++    I+DLG++PG WSQ 
Sbjct: 6   SSSRWMQEHFEDEYVKMAQAQGYRSRAVFKLKEIQDKDQLIKPGMNIIDLGAAPGGWSQF 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A +I G      +++A+DIL M+P+ GV F + DF +    + +   + G P +LV+SDM
Sbjct: 66  ARQIVG---KKDKIIALDILAMDPLEGVDFIQGDFREQAVLDQLYAVLDGAPINLVMSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G++ +D  R++ L E A   A  +L   G FLVK F G    D    +++ F KV
Sbjct: 123 APNMSGNKGVDQPRSIYLGELALETAKTVLAKDGVFLVKLFHGAGFEDFHKEVQQSFTKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           I  KP ASR  S E+++LAKGF+
Sbjct: 183 IIRKPKASRPRSNEVYILAKGFK 205


>gi|332530812|ref|ZP_08406738.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
           ATCC 19624]
 gi|332039724|gb|EGI76124.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
           ATCC 19624]
          Length = 219

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 117/207 (56%), Gaps = 6/207 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-- 83
           ++ WLN H+NDPYV+ AQ EG+RAR+AYKL +I+E  ++++  + IVDLG +PG+WSQ  
Sbjct: 11  NKAWLNDHVNDPYVKLAQKEGYRARAAYKLKEIDETLRLVKPGQVIVDLGCAPGAWSQYL 70

Query: 84  ---VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
              +A +       N  V+ +D+L MEPI GV++ + DF +      +   + G P DLV
Sbjct: 71  RRRLAPQGAAVGELNGSVIGLDLLPMEPIEGVQYIQGDFREAAVLAQLEALLQGRPVDLV 130

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R   L   A  F    L   G  + K F G   N++L L K +
Sbjct: 131 VSDMAPNLSGVASVDTARVEELVALAIDFCNAHLKPSGTLVAKVFHGSGYNELLALFKNN 190

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+ V  +KP ASR  S E FL+  G +
Sbjct: 191 FKTVKPLKPKASRDRSSETFLIGSGLK 217


>gi|296136184|ref|YP_003643426.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
           K12]
 gi|295796306|gb|ADG31096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
           K12]
          Length = 216

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 121/206 (58%), Gaps = 6/206 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H+NDPYV+ AQ EG+RAR+AYKL +I+E   +L+  + +VDLGS+PGSWSQ A
Sbjct: 10  SKAWLQDHLNDPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGSTPGSWSQYA 69

Query: 86  A-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFIRQAIGGNPDLVLS 141
             R+    A    ++A+D+L MEP+  V+F   DF +   ++  E + +  G   D+VLS
Sbjct: 70  RNRLMRGGAVQGTILALDLLPMEPVPDVRFLLGDFREEAVVNQLEALLE--GRKVDVVLS 127

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   L E A  FA   L   G  ++KTF G   + I+   K  FQ
Sbjct: 128 DMAPNLTGIPSADAARIEHLSELALDFAQRWLQPQGAMVIKTFHGSYYSQIVKAFKLVFQ 187

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
           +V  VKP ASR +S E F+LA+  +K
Sbjct: 188 QVKAVKPRASRDKSAETFILARTLKK 213


>gi|198284444|ref|YP_002220765.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665397|ref|YP_002427111.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226703276|sp|B7J8G6|RLME_ACIF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703277|sp|B5ENR5|RLME_ACIF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|198248965|gb|ACH84558.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517610|gb|ACK78196.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 219

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 3/202 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H  DP+VQRA  EG+R+R++YKLL+I +K  +++   R++D+G++PG W+QV
Sbjct: 6   SSEKWLKEHFKDPFVQRAMKEGYRSRASYKLLEIQQKDHLIRPGMRVLDVGAAPGGWTQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA + G      R+VA+D L M+P+        D  D       ++A+ G  DL++SDMA
Sbjct: 66  AAPLIG---RKGRLVAVDRLAMDPVADATVICGDVYDDAILAACQEALPGGADLIMSDMA 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D  R + L E A   A   L  GG  L+K F G    ++   L++ F+K++
Sbjct: 123 PNMSGIASVDQARAIDLAELALDMAHRWLVPGGALLIKVFMGSGAEELRRALRRDFKKIV 182

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASRA S E + LA  F+
Sbjct: 183 VRKPEASRARSTEQYWLALDFQ 204


>gi|134094399|ref|YP_001099474.1| ribosomal RNA large subunit methyltransferase J [Herminiimonas
           arsenicoxydans]
 gi|158513564|sp|A4G4B0|RLME_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|133738302|emb|CAL61347.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA
           methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 214

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 122/205 (59%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           +++WL+ HINDPYV+ AQ EG+RAR+ YKL +I+E  ++++  + IVDLG +PGSWSQ V
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDESEKLIKPGQIIVDLGCTPGSWSQYV 66

Query: 85  AARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
             +++GS     N  ++ +D+L+MEPI  V + + DF + +  E +   + G   DLVLS
Sbjct: 67  RNKLSGSVGGGINGIIIGLDMLEMEPIADVHYIQGDFREQNVLEQLEVVLAGRKVDLVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R M + E A  FA   +   G  LVK F G   NDI+   +  F+
Sbjct: 127 DMAPNLSGIAVADAARMMDIIELAIDFAQHHMKPSGSLLVKCFNGSGFNDIVEKFRHEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP ASR +S E+FLL K  +
Sbjct: 187 TVTQKKPKASRDKSSEIFLLGKTLK 211


>gi|71906582|ref|YP_284169.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Dechloromonas aromatica
           RCB]
 gi|83305658|sp|Q47HI2|RLME_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71846203|gb|AAZ45699.1| 23S rRNA Um-2552 2'-O-methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 205

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  HIND YVQ A+ EGWR+R+A+KL+++++K ++L+    +VDLG++PG WSQV
Sbjct: 6   TSKAWMREHINDTYVQLARKEGWRSRAAFKLMEMDDKDKLLKHGEVVVDLGATPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A +  G   +   V A+D+L+MEPI GV F + DF + +  + + + +G     LV+SDM
Sbjct: 66  AVKRVG---DGGLVFALDLLEMEPIHGVHFIQGDFREDEVLQQLEEQLGERRVGLVMSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E    F+   L   G FLVK FQG      L  +++ F+ V
Sbjct: 123 APNMSGVPLVDQARIMHLAELGLEFSRVHLKPEGAFLVKVFQGTDYETFLKQMRETFKTV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++LL +  R
Sbjct: 183 AVRKPDASRDRSPELYLLGRTLR 205


>gi|189040698|sp|A5IHX0|RLME_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 206

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG W+Q 
Sbjct: 6   SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQY 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSD 142
           A+ ++ GS     R+VA+DIL M+ +  V+F   DF + +   E I        DL+LSD
Sbjct: 66  ASEKMKGSG----RLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLLLSD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  F+K
Sbjct: 122 MAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARASFEK 181

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V+  KP ASR+ S E +LLAKG+
Sbjct: 182 VVIRKPSASRSRSKETYLLAKGY 204


>gi|296108439|ref|YP_003620140.1| cell division protein methyltransferase FtsJ [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295650341|gb|ADG26188.1| cell division protein methyltransferase FtsJ [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 206

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG W+Q 
Sbjct: 6   SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQY 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSD 142
           A+ ++ GS     R+VA+DIL M+ +  V+F   DF + +   E I        DL+LSD
Sbjct: 66  ASEKMKGSG----RLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLLLSD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  F+K
Sbjct: 122 MAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARASFEK 181

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V+  KP ASR+ S E +LLAKG+
Sbjct: 182 VVIRKPSASRSRSKETYLLAKGY 204


>gi|256823582|ref|YP_003147545.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Kangiella koreensis DSM
           16069]
 gi|256797121|gb|ACV27777.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Kangiella koreensis DSM
           16069]
          Length = 206

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +DPYV+++Q +G+R+R+ YKL ++++K+++L     +VDLG++PG WSQ 
Sbjct: 6   SSHRWMREHFDDPYVKKSQKDGYRSRAVYKLEELDQKYKLLGKGVTVVDLGAAPGGWSQY 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
            A   GS     ++ A+DIL+M+P+  V F + DF +      +   IG +  DLVLSDM
Sbjct: 66  VAYKMGSQG---KIFALDILEMDPLPDVDFIQGDFREEAVLNQLLDKIGKHKADLVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M LCE A   A  +L  GG+++VK FQG   +D +   ++ F KV
Sbjct: 123 APNMSGVDAVDQPRGMYLCELALELAQTVLAKGGNYVVKVFQGEGFDDYIRQCREVFDKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++++  G++
Sbjct: 183 LIRKPDASRGRSREVYVVGIGYK 205


>gi|157128998|ref|XP_001655238.1| cell division protein ftsj [Aedes aegypti]
 gi|108872397|gb|EAT36622.1| cell division protein ftsj [Aedes aegypti]
          Length = 239

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 126/208 (60%), Gaps = 7/208 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+R +NDPYV++A++  +R RSA+KLL+I++K+ I++    ++D G+SPGSWSQ+
Sbjct: 27  SSQQWLSRQLNDPYVEKAKMLNYRCRSAFKLLEIDQKYNIIKPGHTVIDCGASPGSWSQI 86

Query: 85  AAR---ITGSNANNTR--VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGG-NPD 137
           A +    +GS     R  V+ +D+L + PI         DF+  +S + IR  +G    D
Sbjct: 87  AVQQSNASGSQPGKPRGMVIGVDLLQIYPIEHATMLGNTDFMKQESQDKIRALLGERRVD 146

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D    ++LC +   FA+ M +     LVK +  G    +   ++
Sbjct: 147 CVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLVKVWDNGEVPLLEKNMQ 206

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K++Q+V  +KP ASR++S E F+LA+GF
Sbjct: 207 KYYQQVKRIKPRASRSDSAENFILARGF 234


>gi|157820165|ref|NP_001100595.1| putative ribosomal RNA methyltransferase 2 [Rattus norvegicus]
 gi|149035019|gb|EDL89739.1| rCG42633 [Rattus norvegicus]
          Length = 246

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 7/223 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T     +   G+   WL RH+ DP+V+ A+ E +R RSA+KLL++NEKH IL+   
Sbjct: 15  RRLHTAVCHYKGRTGAEHLWLMRHLKDPFVKAAKAESYRCRSAFKLLEMNEKHHILRPGL 74

Query: 70  RIVDLGSSPGSWSQVAAR---ITGSNANNTR--VVAIDILDMEPILGVKFF-KFDFLDLD 123
           R++D G++PG+WSQVA +    TG+++++    V+ +D+L M P+ G  F    D  D  
Sbjct: 75  RVLDCGAAPGAWSQVAVQSVNATGADSSSPMGFVLGVDLLHMFPLAGATFLCPADVTDPR 134

Query: 124 SWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +++ I + +     D++LSDMA    G R +DH R +SLC      A+++L+ GG  L K
Sbjct: 135 TFQRILELLPRRRADVILSDMAPNATGIRDLDHDRLISLCLTLVDMAVDILHPGGTLLCK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           T+ G  ++ +   L + F+    VKP ASR ES E++LLA  +
Sbjct: 195 TWAGSKSHLLQKRLAQEFRSTRVVKPEASRKESAEVYLLATQY 237


>gi|119713379|gb|ABL97442.1| 23S rRNA methylase [uncultured marine bacterium EB80_69G07]
          Length = 203

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 128/201 (63%), Gaps = 4/201 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S++W+N+   D YV++++++G+RARSAYKL++I+EK ++ +    ++D+G++PGSWSQ A
Sbjct: 7   SKNWINKQRRDTYVRQSKVDGYRARSAYKLIEIDEKFKVFKGGISVIDIGAAPGSWSQYA 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           +++      N  +++ID+  ME I      + DF + +    I++ +    D+V+SDMA 
Sbjct: 67  SKVV----KNGTIISIDLKKMEKIKNTIQIEGDFTEPNIQAKIKKNLHNPIDVVMSDMAV 122

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G + +D ++T  LC+ A  F+ ++++  G F+ K F G + N+I+ L KK F++V  
Sbjct: 123 NTTGIKDVDAIQTGELCKEAMIFSKDVISEKGIFIAKIFMGRSFNEIVALGKKIFREVKV 182

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR +S E F++ K  R
Sbjct: 183 FKPNSSRKDSKESFIICKNLR 203


>gi|113868416|ref|YP_726905.1| 23S rRNA methylase [Ralstonia eutropha H16]
 gi|122946743|sp|Q0K8Y4|RLME_CUPNH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|113527192|emb|CAJ93537.1| 23S rRNA methylase [Ralstonia eutropha H16]
          Length = 221

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 120/212 (56%), Gaps = 23/212 (10%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA--- 85
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNK 69

Query: 86  ---------ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW----EFIRQAI 132
                     RI G+      VVAID+L MEP+  V F + DF +   +      +  A 
Sbjct: 70  LADSPRAKDGRIDGA------VVAIDLLPMEPVADVTFIQGDFREESVFRELESVVLDAS 123

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           GGN  DLVLSDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + 
Sbjct: 124 GGNKIDLVLSDMAPNLSGVAFADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSGYSQ 183

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           I+   K+HF+ V   KP ASR +S E F+L +
Sbjct: 184 IVEKFKRHFKVVAKRKPKASRDKSSETFILGR 215


>gi|116754447|ref|YP_843565.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosaeta thermophila
           PT]
 gi|121694084|sp|A0B8A1|RLME_METTP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|116665898|gb|ABK14925.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanosaeta thermophila
           PT]
          Length = 255

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 5/194 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y ++A+ EG+RARSAYKL QIN+K  I++   R+VDLG++PG W QVA  ++
Sbjct: 1   MARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVARELS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           G       VV +D+  +EP+ G+   + D    ++ E I  A+GG  D+V+SD A    G
Sbjct: 61  GGI-----VVGVDLERIEPLEGIVTIQGDITKEETLEQIAAALGGQADVVISDAAPNLSG 115

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +DH R++ L  AA   A  +L  GG FLVK FQG   ND L  +K+ F  V    P 
Sbjct: 116 IWDVDHARSIDLSRAALRIAKRLLRPGGSFLVKVFQGDMFNDYLEEVKREFSSVHAYTPP 175

Query: 210 ASRAESVEMFLLAK 223
           ASR ES E++++ K
Sbjct: 176 ASRKESAEIYVIGK 189


>gi|313201615|ref|YP_004040273.1| ribosomal RNA methyltransferase rrmj/ftsj [Methylovorus sp. MP688]
 gi|312440931|gb|ADQ85037.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. MP688]
          Length = 197

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 121/195 (62%), Gaps = 6/195 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RI 88
           +  H+ND +V+RAQ +G+RAR+AYKL++I++K Q+++    IVDLG++PGSWSQVA  R+
Sbjct: 1   MQEHVNDEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGSWSQVAVQRL 60

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G      R++A+D+L+M  I GV F + DF +      + + +   P DLV++DMA   
Sbjct: 61  KGQG----RIIALDLLEMAAIPGVDFIQGDFREDAVLLQLEEKLNNRPIDLVIADMAPNI 116

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L E A  F+L+ L  GG+FLVK F G   ++I+  ++  F KV+  K
Sbjct: 117 SGISSVDQANAAYLTELALEFSLKWLKPGGNFLVKVFIGSGFDEIMKTMRLGFDKVVTRK 176

Query: 208 PVASRAESVEMFLLA 222
           P ASR  S E++LL 
Sbjct: 177 PKASRDRSSEVYLLG 191


>gi|255067624|ref|ZP_05319479.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
           ATCC 29256]
 gi|255048098|gb|EET43562.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
           ATCC 29256]
          Length = 184

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 4/186 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQVAA++ G   N+ RV A+
Sbjct: 2   AQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NSGRVFAL 58

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
           DIL M+ I GV F + DF + +        +   P DLV+ DMA    G+   D  R+  
Sbjct: 59  DILPMDEIEGVSFIQGDFREDEVLAQFETLLDARPLDLVICDMAPNMSGNAVTDQARSFY 118

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LCE A  FA+  L  GG FLVK FQG    + +  +++ F  V   KP ASR  S E++L
Sbjct: 119 LCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIYL 178

Query: 221 LAKGFR 226
           L K  R
Sbjct: 179 LGKNKR 184


>gi|54298779|ref|YP_125148.1| ribosomal RNA large subunit methyltransferase (cell division
           protein FtsJ) [Legionella pneumophila str. Paris]
 gi|81369695|sp|Q5X1A0|RLME_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305660|sp|Q5ZRT1|RLME_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|53752564|emb|CAH13996.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella pneumophila str. Paris]
          Length = 206

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG W+Q 
Sbjct: 6   SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQY 65

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSD 142
           A+ ++ GS     R+VA+DIL M+ +  V+F   DF + +   E I        DL+LSD
Sbjct: 66  ASEKMRGSG----RLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLLLSD 121

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  F+K
Sbjct: 122 MAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARASFEK 181

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V+  KP ASR+ S E +LLAKG+
Sbjct: 182 VVIRKPSASRSRSKETYLLAKGY 204


>gi|209517186|ref|ZP_03266031.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
 gi|209502322|gb|EEA02333.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
          Length = 220

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 120/209 (57%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
             +G+  N  R       ++A+DIL MEP+  V F + DF +      + + +G    DL
Sbjct: 70  LASGAQRNAEREGGIDGTIIALDILPMEPVADVHFIQGDFREDSVLVQLEELVGARQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVAIADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKR 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  ++
Sbjct: 190 QFKVVGARKPKASRDKSSETFILGKHLKR 218


>gi|288575930|ref|ZP_05977888.2| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           ATCC 25996]
 gi|288566590|gb|EFC88150.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           ATCC 25996]
          Length = 184

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 4/186 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQVAA++ G   N+ RV A+
Sbjct: 2   AQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NSGRVFAL 58

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
           DIL M+ I GV F + DF + D        +   P DLV+ DMA    G+   D  R+  
Sbjct: 59  DILPMDEIEGVSFIQGDFRENDVLAQFETLLDDRPLDLVICDMAPNMSGNAVTDQARSFY 118

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LCE A  FA+  L  GG FLVK FQG    + +  +++ F  V   KP ASR  S E++L
Sbjct: 119 LCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMAAMREIFGIVQTRKPEASRNRSSEIYL 178

Query: 221 LAKGFR 226
           L K  R
Sbjct: 179 LGKNKR 184


>gi|163750817|ref|ZP_02158052.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           benthica KT99]
 gi|161329512|gb|EDQ00506.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           benthica KT99]
          Length = 209

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV+ AQ  G R+R+A+KL +I EK ++++    +VDLG++PG WSQV
Sbjct: 9   SSSRWLQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDKLIRPGMTVVDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G G  D+VLSDM
Sbjct: 69  AVKLVG---DRGKVIACDILAMDPIVGVDFLQGDFREEKVLDALLTRVGDGKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  R M L E A     +++   G F VK FQG    + +  ++  F+KV
Sbjct: 126 APNMSGSGGIDQPRAMYLVELALDMCHQVMAPNGCFAVKVFQGEGFEEYMKSVRAAFKKV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++L+A G++
Sbjct: 186 KTRKPDSSRARSREVYLVATGYK 208


>gi|290996969|ref|XP_002681054.1| predicted protein [Naegleria gruberi]
 gi|284094677|gb|EFC48310.1| predicted protein [Naegleria gruberi]
          Length = 239

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 129/210 (61%), Gaps = 11/210 (5%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK-HQILQSNRRIVDLGSSPGSWSQ 83
           SS  WL+R   D +V++A+ +G+R+R+A+KLL+I+EK  + L+ ++ I+DLG++PGSWSQ
Sbjct: 32  SSGRWLDRQRRDTFVKQAKAQGYRSRAAFKLLEIDEKWGKFLEKSKVIIDLGAAPGSWSQ 91

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL-----DSWEFIRQAI--GGNP 136
           VAA    S     +++ IDILDMEP+          + L     DS   +R  +  G   
Sbjct: 92  VAAEKMKSGG---KLITIDILDMEPLKSPPNKNLQIIQLKGKFEDSIPQLRSYLNEGEFA 148

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D +LSDMA  T G + +DH R + LC  +  FA E+L  GG  L+K F G     +   L
Sbjct: 149 DCLLSDMAPNTSGVKSLDHNRIIFLCNTSIDFAFEVLKPGGCMLMKIFSGPEDATLKNDL 208

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K++F+ V  VKP +SR+ES E+++LA+GF+
Sbjct: 209 KQYFENVNFVKPASSRSESSEVYVLAEGFK 238


>gi|323144908|ref|ZP_08079471.1| ribosomal RNA large subunit methyltransferase J [Succinatimonas
           hippei YIT 12066]
 gi|322415306|gb|EFY06077.1| ribosomal RNA large subunit methyltransferase J [Succinatimonas
           hippei YIT 12066]
          Length = 228

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 3/207 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R    S   WL  H +DPYV+ A   G R+R+++KL ++ ++ +++++   +VDLG++PG
Sbjct: 4   RKRTASQTRWLKEHFSDPYVKEAHKRGLRSRASFKLEELQQRDRLIKAGNIVVDLGAAPG 63

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
            WS+ A +  G      +V+A DIL + PI  V F + DF D   +  +   IG   D+V
Sbjct: 64  GWSEFAVKCVGEKG---KVIACDILPIRPIRNVTFLQGDFRDEAVFLKLYSMIGVGADVV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A   A  +L IGG F+VK F G  + + L  L+K 
Sbjct: 121 LSDMAPNMSGTTAIDQPRAMLLSELALDMARRVLRIGGSFVVKVFTGSGSQEYLAELRKD 180

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASR  S E++++A GF+
Sbjct: 181 FSTVKVRKPDASRDRSREVYMVATGFK 207


>gi|78065909|ref|YP_368678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. 383]
 gi|123568833|sp|Q39HN2|RLME_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77966654|gb|ABB08034.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 220

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
              G   +  R       +VA+DIL MEPI  V F + DF + +    + + + G + DL
Sbjct: 70  LAQGKKRDTEREGGIDGTIVALDILPMEPIADVHFLQGDFREDEVLHQLEEVLEGRDVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQ 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L +  ++
Sbjct: 190 QFKTVAPRKPKASRDKSSETFILGRHLKR 218


>gi|254252702|ref|ZP_04946020.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
 gi|124895311|gb|EAY69191.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
          Length = 220

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 119/209 (56%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
              G   +  R       +VA+D+L MEPI  V F + DF + D    +   + G P DL
Sbjct: 70  LAQGKRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDDVLHQLEDVLEGRPVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQ 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L +  ++
Sbjct: 190 QFKVVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|307730492|ref|YP_003907716.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1003]
 gi|307585027|gb|ADN58425.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1003]
          Length = 220

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 117/209 (55%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69

Query: 89  TGSNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
               A          +  ++A+DIL MEP+  V F + DF +      + + +G    DL
Sbjct: 70  LAKGAQRDAEREGGIDGTIIALDILPMEPVADVHFIQGDFREDSVLSQLEEIVGERQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFKR 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  +K
Sbjct: 190 QFKVVAARKPKASRDKSSETFILGKHLKK 218


>gi|254787193|ref|YP_003074622.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
           turnerae T7901]
 gi|237683719|gb|ACR10983.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
           turnerae T7901]
          Length = 206

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV+ +Q +G+R+R++YKL++++ K ++ +    +VDLG++PG WSQV
Sbjct: 6   SSHRWLREHFSDQYVKASQKDGYRSRASYKLIELDNKDKLFRPGMTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           A +  G   +  +V+A DIL M+ I GV F + DF +    E +  A+ G   DLV+SDM
Sbjct: 66  AVQQIG---DKGQVIASDILPMDSIAGVTFIQGDFTEESVLEELLGAMDGERADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  ++M L E A   A ++L  GG F+ K F G   +D        F K 
Sbjct: 123 APNMSGVTAVDQPKSMYLVELALDMAKQVLKPGGTFVCKVFHGEGFDDFFKDCNASFSKA 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASRA S E++L+AKG++
Sbjct: 183 VTRKPDASRARSREVYLVAKGYK 205


>gi|88658179|ref|YP_507347.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           chaffeensis str. Arkansas]
 gi|123493402|sp|Q2GGT6|RLME_EHRCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88599636|gb|ABD45105.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 212

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 8/206 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+R +NDPYV  A+ +G+R+R+ +KL++++ K  I +  + ++DLGSSPG WSQ 
Sbjct: 2   SSTRWLHRQLNDPYVSLAKKQGYRSRATFKLIEMDSKFSIFKKGQYVLDLGSSPGGWSQF 61

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDF---LDLDSWEFIRQAIGGNPDLVLS 141
           AA+    N NN  V A+DI +M+ I  V F + D    ++L S +F  +      D++LS
Sbjct: 62  AAQRVSHN-NNNPVFAVDIQNMDAIPNVIFIQCDIINDIELLSDKFHNKKF----DVILS 116

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G++++DH   ++LCE +    +      G F+ K  QG    +    +K +FQ
Sbjct: 117 DMAPKACGNKQVDHANIINLCEISLDIVVRFTRENGVFITKILQGEYEKEFYQSMKTYFQ 176

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
            V + KP ASR +S EM+L+  GF+K
Sbjct: 177 SVKYFKPKASRKDSSEMYLVGLGFKK 202


>gi|148361109|ref|YP_001252316.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila str. Corby]
 gi|148282882|gb|ABQ56970.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila str. Corby]
          Length = 233

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG W+Q 
Sbjct: 33  SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQY 92

Query: 85  AA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSD 142
           A+ ++ GS     R+VA+DIL M+ +  V+F   DF + +   E I        DL+LSD
Sbjct: 93  ASEKMKGSG----RLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLLLSD 148

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  F+K
Sbjct: 149 MAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARASFEK 208

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V+  KP ASR+ S E +LLAKG+
Sbjct: 209 VVIRKPSASRSRSKETYLLAKGY 231


>gi|52842994|ref|YP_096793.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52630105|gb|AAU28846.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 247

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 130/215 (60%), Gaps = 8/215 (3%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           L+  V NR+   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +V
Sbjct: 37  LSLFVMNRT--KSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVV 94

Query: 73  DLGSSPGSWSQVAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQ 130
           DLG++PG W+Q A+ ++ GS     R+VA+DIL M+ +  V+F   DF + +   E I  
Sbjct: 95  DLGAAPGGWTQYASEKMRGSG----RLVALDILPMDALPNVEFILGDFREDNVLQELINL 150

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 DL+LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   +
Sbjct: 151 IPQRTLDLLLSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFD 210

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +++   +  F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 211 ELVKQARASFEKVVIRKPSASRSRSKETYLLAKGY 245


>gi|107022371|ref|YP_620698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           AU 1054]
 gi|116689318|ref|YP_834941.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           HI2424]
 gi|170732617|ref|YP_001764564.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           MC0-3]
 gi|206559643|ref|YP_002230404.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia cenocepacia J2315]
 gi|254245761|ref|ZP_04939082.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           PC184]
 gi|123371703|sp|Q1BXD0|RLME_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459622|sp|A0K6C1|RLME_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703285|sp|B1JZE9|RLME_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703286|sp|B4E5F3|RLME_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|105892560|gb|ABF75725.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647407|gb|ABK08048.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|124870537|gb|EAY62253.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           PC184]
 gi|169815859|gb|ACA90442.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           MC0-3]
 gi|198035681|emb|CAR51568.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 118/208 (56%), Gaps = 10/208 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
              G   +  R       +VA+DIL MEPI  V F + DF + D    + + + G   DL
Sbjct: 70  LAQGKKRDAEREGGIDGTIVALDILPMEPIADVHFLQGDFREDDVLHQLEEVLEGRAVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQ 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ V   KP ASR +S E F+L +  +
Sbjct: 190 QFKVVAPRKPKASRDKSSETFILGRQLK 217


>gi|24372779|ref|NP_716821.1| 23S rRNA methyltransferase J [Shewanella oneidensis MR-1]
 gi|81462880|sp|Q8EHM3|RLME_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|24346860|gb|AAN54266.1|AE015563_6 ribosomal RNA large subunit methyltransferase J [Shewanella
           oneidensis MR-1]
          Length = 209

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL ++ +K Q+++    +VDLG++PG WSQ
Sbjct: 8   ASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           VA ++ G   +  +V+A DIL M+PI+GV F + DF +    E +   +G +  D+VLSD
Sbjct: 68  VAVKLVG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ 
Sbjct: 125 MAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKEAFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|194290076|ref|YP_002005983.1| ribosomal RNA large subunit methyltransferase j [Cupriavidus
           taiwanensis LMG 19424]
 gi|226703293|sp|B3R1S2|RLME_CUPTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|193223911|emb|CAQ69920.1| Ribosomal RNA large subunit methyltransferase J [Cupriavidus
           taiwanensis LMG 19424]
          Length = 221

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/212 (42%), Positives = 119/212 (56%), Gaps = 23/212 (10%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA--- 85
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNK 69

Query: 86  ---------ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW----EFIRQAI 132
                     RI G+      VVAID+L MEP+  V F + DF +   +      +  A 
Sbjct: 70  LADSPRARDGRIDGA------VVAIDLLPMEPVADVTFIQGDFREESVFRELESVVLDAS 123

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           GGN  DLVLSDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + 
Sbjct: 124 GGNKIDLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSGYSQ 183

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           I+   K+ F+ V   KP ASR +S E F+L +
Sbjct: 184 IVEKFKRQFKVVAKRKPKASRDKSSETFILGR 215


>gi|114046589|ref|YP_737139.1| 23S rRNA methyltransferase J [Shewanella sp. MR-7]
 gi|122944866|sp|Q0HXS3|RLME_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|113888031|gb|ABI42082.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. MR-7]
          Length = 209

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL ++ +K Q+++    +VDLG++PG WSQ
Sbjct: 8   ASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           VA ++ G   +  +V+A DIL M+PI+GV F + DF +    E +   +G +  D+VLSD
Sbjct: 68  VAVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ 
Sbjct: 125 MAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKEAFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|114330999|ref|YP_747221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas eutropha
           C91]
 gi|122314099|sp|Q0AHC6|RLME_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114308013|gb|ABI59256.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosomonas eutropha C91]
          Length = 206

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +SR W+  HIND +V++A  EG+R+R+AYKL +I E+  +      +VDLG+SPGSWSQV
Sbjct: 6   TSRAWIKAHINDNFVRKANHEGYRSRAAYKLQEIAERDALFSPGMTVVDLGASPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           A    G      +V A+D+LDM+ + G  F + DF +      + + + G   DLV+SDM
Sbjct: 66  ALESVGPTG---KVFALDMLDMQSLPGATFIQGDFRENGVLAALEKVLDGKRADLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G R  D    M L E A  F  E LN G +FLVK FQG        L++  F KV
Sbjct: 123 SPNLTGIRVSDQAHGMYLAELALMFCREHLNPGENFLVKVFQGSDFEAFRQLMQADFAKV 182

Query: 204 IHVKPVASRAESVEMFLL 221
           +  KP ASR  S E++LL
Sbjct: 183 VIRKPKASRDRSKELYLL 200


>gi|167562362|ref|ZP_02355278.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           oklahomensis EO147]
 gi|167574341|ref|ZP_02367215.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           oklahomensis C6786]
          Length = 220

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       ++A+D+L MEPI  V F + DF + D    
Sbjct: 58  APGSWSQYARNKLAQGKRRDTVREGGIDGTIIALDMLPMEPIADVHFIQGDFREDDVLGQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G P DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEELLAGRPVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKHQFKMVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|120597892|ref|YP_962466.1| 23S rRNA methyltransferase J [Shewanella sp. W3-18-1]
 gi|146293936|ref|YP_001184360.1| 23S rRNA methyltransferase J [Shewanella putrefaciens CN-32]
 gi|143461753|sp|A1RGW7|RLME_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040339|sp|A4Y9C8|RLME_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120557985|gb|ABM23912.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. W3-18-1]
 gi|145565626|gb|ABP76561.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
           CN-32]
 gi|319427313|gb|ADV55387.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
           200]
          Length = 209

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL ++ +K Q+++    +VDLG++PG WSQ
Sbjct: 8   ASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           VA ++ G   +  +V+A DIL M+PI+GV F + DF +    E +   +G +  D+VLSD
Sbjct: 68  VAVKLVG---DRGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ 
Sbjct: 125 MAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKEAFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|119471556|ref|ZP_01613970.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
 gi|119445499|gb|EAW26785.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
          Length = 209

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 124/211 (58%), Gaps = 8/211 (3%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL ++  + ++L+    +VDLG++P
Sbjct: 3   NKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFIRQAIGGN 135
           GSWSQ  A   G   +  +VVA DIL M+ + GV F + DF +   LD+   +++  G N
Sbjct: 63  GSWSQYLAEKVG---DKGQVVACDILPMDSLAGVDFLQGDFREEAVLDA--LLKRIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQYLQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASRA S E++++A G++
Sbjct: 178 VRNSFKAVKIRKPDASRARSREVYIVATGYK 208


>gi|91792359|ref|YP_562010.1| 23S rRNA methyltransferase J [Shewanella denitrificans OS217]
 gi|123357037|sp|Q12QI9|RLME_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91714361|gb|ABE54287.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella denitrificans
           OS217]
          Length = 209

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL +I +K  +++    +VDLG++PG WSQ
Sbjct: 8   ASSARWMQEHFDDHYVKLAQKRGLRSRAAFKLEEIQQKDHLIRQGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
           VA ++ G   +N +V+A DIL M+PI+GV F + DF + +    +   +G +  D+VLSD
Sbjct: 68  VAVKLAG---DNGKVIACDILPMDPIVGVDFLQGDFREENVLNALLDRVGEDKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ 
Sbjct: 125 MAPNMSGSDGVDQPRAMYLVELALEMCHQVLAPNGCFAVKVFQGEGFDEYIKSVKQAFKT 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|239815604|ref|YP_002944514.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
           S110]
 gi|259494572|sp|C5CKU4|RLME_VARPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|239802181|gb|ACS19248.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
           S110]
          Length = 222

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 125/220 (56%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           ++ K K++     ++ WL+ HINDPYV+ A  EG+RAR+AYKL +I+E   +++  + +V
Sbjct: 1   MSTKAKSKKV---NKAWLHDHINDPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVV 57

Query: 73  DLGSSPGSWSQVAAR---ITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLGS+PG+WSQ   R     G+ A   N  ++A+DIL MEPI GV F + DF + +  E 
Sbjct: 58  DLGSTPGAWSQYLRRRMSPEGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQ 117

Query: 128 IRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   L E A  FA   L   G  + K F G
Sbjct: 118 VLGVLAGRKADLVVSDMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              ++++ L K +F+ V   KP ASR +S E FL+  G +
Sbjct: 178 SGYDELVKLFKANFRTVKPFKPKASRDKSSETFLVGMGLK 217


>gi|148225294|ref|NP_001089803.1| FtsJ homolog 2 [Xenopus laevis]
 gi|76779644|gb|AAI06596.1| MGC131369 protein [Xenopus laevis]
          Length = 246

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 123/217 (56%), Gaps = 9/217 (4%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           KNR+   + + WL R + DPY++ AQ   +R RSA+KLL+I+ KH IL     ++D G++
Sbjct: 29  KNRT--AAEQKWLARQMKDPYIKEAQAHNYRCRSAFKLLEIDSKHHILHPGHHVIDCGAA 86

Query: 78  PGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQA 131
           PG+WSQVA     S   ++      VV +D+L++ P+ G  F    D  D D+   I   
Sbjct: 87  PGAWSQVAVEKVNSLGRDSAARAGFVVGVDLLNITPLDGAVFLSNSDITDSDTQRKIISV 146

Query: 132 I-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +  G  D++LSDMA    G R +DH R +++C +    +  +L  GG FL K + G   +
Sbjct: 147 LPSGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSQRVLLPGGTFLCKVWDGSEIS 206

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +   L++ FQ V  VKP ASR ES E++LLAK  ++
Sbjct: 207 LVRDRLRQRFQDVRTVKPKASRMESAEIYLLAKMHKQ 243


>gi|121605506|ref|YP_982835.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas
           naphthalenivorans CJ2]
 gi|143460978|sp|A1VQI6|RLME_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120594475|gb|ABM37914.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 245

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 12/226 (5%)

Query: 13  LTQKVKNRSCQGS--SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           +T+ V     +G   ++ WL+ HINDPYV++A+ EG+RAR+A+KL +++E   +++    
Sbjct: 15  VTKVVAKGDAKGKKVNKAWLHDHINDPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDC 74

Query: 71  IVDLGSSPGSWSQVAAR---ITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +VDLGS+PG+WSQ   R    TG+   A N R++ +D+L MEPI GV F + DF + +  
Sbjct: 75  VVDLGSTPGAWSQYVRRKLSPTGAAVGALNGRIIGLDLLPMEPIEGVVFIQGDFREPEVL 134

Query: 126 EFIRQAIGGNP-----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
             + QA+         DLV+SDMA    G    D  R   L E A  FA   +   G  +
Sbjct: 135 AKLEQALSTEKGPVKVDLVISDMAPNLSGIESADAARIAHLVELAVEFAQTRMKPDGALV 194

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           VK F G   +D++ L +  F+ V  +KP ASR  S E FL+ +G +
Sbjct: 195 VKLFHGSGYDDLVKLFQASFKVVKRMKPKASRPNSSETFLVGRGLK 240


>gi|294340419|emb|CAZ88800.1| putative Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) (Cell division protein ftsJ)
           [Thiomonas sp. 3As]
          Length = 216

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 120/206 (58%), Gaps = 6/206 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H+NDPYV+ AQ EG+RAR+AYKL +I+E   +L+  + +VDLGS+PGSWSQ A
Sbjct: 10  SKAWLQDHLNDPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGSTPGSWSQYA 69

Query: 86  A-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFIRQAIGGNPDLVLS 141
             R+    A    ++++D+L MEP+  V F   DF +   ++  E + +  G   D+VLS
Sbjct: 70  RNRLMRGGAVQGTILSLDLLPMEPVPDVHFLLGDFREEAVVNQLEALLE--GRKVDVVLS 127

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   L E A  FA   L   G  ++KTF G   + I+   K  FQ
Sbjct: 128 DMAPNLTGIPSADAARIEHLSELALDFAQRWLQPQGAMVIKTFHGSYYSQIVKAFKLVFQ 187

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
           +V  VKP ASR +S E F+LA+  +K
Sbjct: 188 QVKAVKPQASRDKSAETFILARTLKK 213


>gi|319793960|ref|YP_004155600.1| ribosomal RNA methyltransferase rrmj/ftsj [Variovorax paradoxus
           EPS]
 gi|315596423|gb|ADU37489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
           EPS]
          Length = 222

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 126/220 (57%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           ++ K K++     ++ WL+ HINDPYV+ A  EG+RAR+AYKL +I+E   +++  + +V
Sbjct: 1   MSTKAKSKKV---NKAWLHDHINDPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVV 57

Query: 73  DLGSSPGSWSQ-VAARITGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLGS+PG+WSQ +  R++   A     N  ++A+D+L MEPI GV F + DF +++  E 
Sbjct: 58  DLGSTPGAWSQYLRRRMSPEGAAIGTLNGTIIALDMLAMEPIEGVTFIQGDFREVELLEQ 117

Query: 128 IRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   L E A  FA   L   G  + K F G
Sbjct: 118 VLGVLAGRKADLVVSDMAPNISGIHSADGARIAHLIELAVDFAQHHLKPEGALVAKLFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G  ++ + L K  F+ V   KP ASR +S E FL+  G +
Sbjct: 178 GGYDESVKLFKASFRTVKPFKPKASRDKSAETFLVGMGLK 217


>gi|170697951|ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
 gi|170137117|gb|EDT05362.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
          Length = 220

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
              G   +  R       ++A+D+L MEPI  V F + DF + D    + + + G   DL
Sbjct: 70  LAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLEEVLEGRAVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQ 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L +  ++
Sbjct: 190 QFKVVAPRKPKASRDKSSETFILGRQLKQ 218


>gi|195450132|ref|XP_002072378.1| GK22358 [Drosophila willistoni]
 gi|194168463|gb|EDW83364.1| GK22358 [Drosophila willistoni]
          Length = 249

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 123/209 (58%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R ++DPYV++A +  +R RSA+KLL+I++K+ ++Q    ++D G++PGSW+QV
Sbjct: 39  SSQEWLTRQLSDPYVEKAHMMNYRCRSAFKLLEIDDKYHLMQPGYTVIDCGAAPGSWTQV 98

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           A   T +N    +     V++ID+L    + G V +   DF    + + +++++ G   +
Sbjct: 99  AVERTNANGKQEKKPLGSVISIDLLHFHAVPGAVIYGGMDFTSAVAQQRLKESLAGRRVN 158

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +   + 
Sbjct: 159 CVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSGPDANLVVKVWDNGDVPKLEKTML 218

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +H++KV  VKP ASR +S E FL+A+GFR
Sbjct: 219 QHYEKVKRVKPRASRGDSAEHFLVARGFR 247


>gi|134295359|ref|YP_001119094.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
           vietnamiensis G4]
 gi|189040696|sp|A4JDA6|RLME_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|134138516|gb|ABO54259.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 220

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 10/208 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
              G   +  R       ++A+D+L MEPI  V F + DF + D    +   + G P DL
Sbjct: 70  LAQGKQRDAQREGGIDGTIIALDLLPMEPIADVHFLQGDFREDDVLHQLEGVLEGRPVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVASADAARIEHICDLALEFAQNHLKPEGALLVKCFHGSGYSQIVEKFKQ 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ V   KP ASR +S E F+L +  +
Sbjct: 190 QFKVVAPRKPKASRDKSSETFILGRQLK 217


>gi|74317150|ref|YP_314890.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
 gi|123612003|sp|Q3SJR5|RLME_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|74056645|gb|AAZ97085.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
          Length = 220

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 7/212 (3%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + QK K R+  GS+  W++ H+ D YV++AQ +G+R+R+AYKLL+I+ +  +L     +V
Sbjct: 1   MAQKPK-RTKSGSA--WMHEHVTDAYVKKAQQDGFRSRAAYKLLEIDSRDHLLHPGMTVV 57

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSW QVA +         RV+AID+L + P+ GV+  + DF   D+  ++   +
Sbjct: 58  DLGAAPGSWCQVAVQ---KMKRQGRVLAIDLLPVAPLPGVEALQGDFTAPDTLAWLENTL 114

Query: 133 -GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                DLVLSDMA    G    D  R   LCE A  FA+  L   G FLVK FQG    D
Sbjct: 115 QAARVDLVLSDMAPNMSGVMLRDQARHYELCELALDFAVNWLKPDGAFLVKVFQGSGFED 174

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
               +++ F +V+  KP ASR  S E++LL +
Sbjct: 175 FRNAMRRAFDQVVIRKPDASRDRSSEVYLLGR 206


>gi|115351226|ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           AMMD]
 gi|122323529|sp|Q0BGJ2|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115281214|gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
          Length = 220

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q    +WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQ----NWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       ++A+D+L MEPI  V F + DF + D    
Sbjct: 58  TPGSWSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G
Sbjct: 118 LEDVLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K+ F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLKQ 218


>gi|157376529|ref|YP_001475129.1| 23S rRNA methyltransferase J [Shewanella sediminis HAW-EB3]
 gi|189040340|sp|A8FYS8|RLME_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157318903|gb|ABV38001.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sediminis
           HAW-EB3]
          Length = 209

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +D YV+ AQ  G+R+R+A+K+ +I EK ++++    +VDLG++PG WSQV
Sbjct: 9   SSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +N +V+A DIL M+PI+GV F + DF +    + +   +G    D+VLSDM
Sbjct: 69  AVKLAG---DNGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F VK FQG    + +  +++ F+ V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEYMKSVREAFKTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++L+A G++
Sbjct: 186 KTRKPDSSRARSREVYLVATGYK 208


>gi|114778047|ref|ZP_01452947.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551653|gb|EAU54206.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Mariprofundus ferrooxydans PV-1]
          Length = 220

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 6/216 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRI 71
           + Q+ K+++ + +S  W  RH NDP+V+RAQ EG R+R+A+KL +I ++H + +  N  +
Sbjct: 1   MAQQSKSKAARKTSA-WFQRHSNDPHVKRAQKEGKRSRAAFKLTEILDEHGLKISKNAVV 59

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG +PGSWS   AR  G       V+ ID+L ++ I GV   + DF   D    + +A
Sbjct: 60  VDLGCAPGSWSVELARRVGPGGI---VIGIDLLPLDGITGVTLIQGDFDSPDGQAALAEA 116

Query: 132 IGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           + G   DLV+SDMA    G + +D +R + L E    FA + L  GGD L+KTF G   +
Sbjct: 117 LQGRMVDLVVSDMAPEMAGDKLVDQMRMIGLNEMTLHFARQYLRPGGDILMKTFMGEGYD 176

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                L   F+K+ ++KP ASR  S E FLL + F+
Sbjct: 177 AFRKELGLSFKKIKNIKPAASRKTSSEFFLLGREFK 212


>gi|328783221|ref|XP_003250253.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
           [Apis mellifera]
          Length = 251

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 6/208 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R I DPYV+ A+ E +R RSAYKLL+INE+ +IL+  + ++D G++PGSW+QV
Sbjct: 34  SSQLWLTRQIEDPYVELAKRENYRCRSAYKLLEINERFKILEPGKIVIDCGAAPGSWTQV 93

Query: 85  AARITGSNANNTR----VVAIDILDMEPILGVKFFK-FDFLDLDSWEFIRQAIGGNP-DL 138
           A ++T +NA        V+ ID   + PI G       DF+   S   I   + G   ++
Sbjct: 94  AVKLTNANAKQKSAIGTVLGIDKQPIYPIEGATLLSGMDFMAATSQNKILNILNGRKVNV 153

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
            LSDMA    G R +DH   M L  +A  FAL++++I G F+ K + G  +  +   L +
Sbjct: 154 FLSDMAPNASGIRDLDHENIMKLVYSALKFALQIIHINGIFVCKLWDGKKSLQLEKDLTR 213

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ V +++P A+R ES E FL+A+ F+
Sbjct: 214 FFKYVKNIRPKATRDESTEKFLIAREFK 241


>gi|315127241|ref|YP_004069244.1| 23S rRNA methyltransferase J [Pseudoalteromonas sp. SM9913]
 gi|315015755|gb|ADT69093.1| 23S rRNA methyltransferase J [Pseudoalteromonas sp. SM9913]
          Length = 209

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 8/211 (3%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL +I  K ++L+    +VDLG++P
Sbjct: 3   NKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEIQNKDKLLRPAMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFIRQAIGGN 135
           GSWSQ  A   G   +  +VVA DIL M+ + GV F + DF +   LD+   +++  G N
Sbjct: 63  GSWSQYLAEKVG---DKGQVVACDILPMDSLAGVDFLQGDFREEAVLDA--LLKRIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQYLQD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASR  S E++++A G++
Sbjct: 178 VRNSFKAVKIRKPDASRPRSREVYIVATGYK 208


>gi|322794006|gb|EFZ17244.1| hypothetical protein SINV_09000 [Solenopsis invicta]
          Length = 246

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R + DPYV++A+ E +R RSA+KLL+INE+ +I      +VD G++PGSW+QV
Sbjct: 34  SSQLWLARQLRDPYVEKAKQEKYRCRSAFKLLEINERFKIFSPGLTVVDCGAAPGSWTQV 93

Query: 85  AARITGSNANNT----RVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-DL 138
           A  +T ++        RV AID L   P+ G       DF    + E + + + G+  D+
Sbjct: 94  ATNLTNAHGKKKGRIGRVYAIDKLPFYPVEGATVLGNMDFTSPKTQETLIELLQGDKVDV 153

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VLSDMA    G +++DH   + L  AA  FAL++  I G  ++K + GG        L K
Sbjct: 154 VLSDMAPNATGMKEMDHDNIILLAYAALRFALQISKINGTLVIKVWDGGKAQQFEQNLSK 213

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  +  ++P A+R ES E F LA+GF+
Sbjct: 214 FYNSIKIIRPDATRDESTEKFFLARGFK 241


>gi|172060240|ref|YP_001807892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MC40-6]
 gi|226703284|sp|B1YMW2|RLME_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|171992757|gb|ACB63676.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MC40-6]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 118/209 (56%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
              G   +  R       ++A+D+L MEPI  V F + DF + D    +   + G   DL
Sbjct: 70  LAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLEDVLEGRAVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQ 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L +  ++
Sbjct: 190 QFKVVAPRKPKASRDKSSETFILGRQLKQ 218


>gi|237811778|ref|YP_002896229.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei MSHR346]
 gi|237504609|gb|ACQ96927.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei MSHR346]
          Length = 252

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 127/231 (54%), Gaps = 14/231 (6%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S+ ++ L +  KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++
Sbjct: 24  SNRQQSLHRMAKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIR 79

Query: 67  SNRRIVDLGSSPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKF 117
             + IVDLG++PGSWSQ A      G   +  R       ++A+D+L MEP+  V F + 
Sbjct: 80  PGQVIVDLGAAPGSWSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQG 139

Query: 118 DFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           DF +      + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   
Sbjct: 140 DFREESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPD 199

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G  LVK F G   + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 200 GALLVKCFHGSGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 250


>gi|195112102|ref|XP_002000615.1| GI22429 [Drosophila mojavensis]
 gi|193917209|gb|EDW16076.1| GI22429 [Drosophila mojavensis]
          Length = 254

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 124/213 (58%), Gaps = 15/213 (7%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+DWL R + DPYV++A++  +R RSA+KLL++++K++IL+    ++D G++PGSW+QV
Sbjct: 39  SSQDWLTRQLADPYVEKARMLNFRCRSAFKLLEMDDKYKILKPGDVVLDCGAAPGSWTQV 98

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           AA  T +N    R     V +ID+L    + G   F   DF    + + +R+++ G   +
Sbjct: 99  AAERTNANGKTERMPRGAVYSIDLLHFHAVPGATIFGGMDFTSPLAQQRLRESLAGRSVN 158

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT----NDIL 193
            VLSDMA    G R +D     +LC     FAL M     + +VK +  G       DIL
Sbjct: 159 CVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKIWDNGDVPKLERDIL 218

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           C    +++KV  VKP ASR +S E FLLA+GF+
Sbjct: 219 C----YYEKVKRVKPRASRGDSAEHFLLARGFK 247


>gi|56460084|ref|YP_155365.1| 23S rRNA methyltransferase J [Idiomarina loihiensis L2TR]
 gi|81362904|sp|Q5QXK8|RLME_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56179094|gb|AAV81816.1| 23S rRNA methylase [Idiomarina loihiensis L2TR]
          Length = 208

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS+ WL  H +D +VQ+AQ +G R+R+ +KL +I ++ ++++  + +VDLG++
Sbjct: 3   KKRSV--SSQRWLKEHFDDQFVQKAQKKGLRSRAVFKLEEIQKRDKLIKKGQTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NP 136
           PG WSQ  A     +    +++A DIL M+PI GV F + DF +    E + + IGG N 
Sbjct: 61  PGGWSQYVADYFNGDG---QIIACDILAMDPIAGVDFLQGDFREESVLEALLERIGGKNV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G+  +D  R+M L E A     ++L  GG F VK FQG      L  +
Sbjct: 118 DVVLSDMAPNMSGNGTVDQARSMYLVELALDMCHQVLKPGGSFAVKVFQGQGFESFLKDV 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP +SRA S E++L+A  ++
Sbjct: 178 RAAFNDVKTRKPESSRARSREVYLVATDYK 207


>gi|117926296|ref|YP_866913.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetococcus sp. MC-1]
 gi|143460465|sp|A0LC14|RLME_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|117610052|gb|ABK45507.1| 23S rRNA Um-2552 2'-O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 214

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/211 (39%), Positives = 123/211 (58%), Gaps = 13/211 (6%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-------ILQSNRRIVDLGSS 77
           SS+ WL  H NDPYVQ+A+ EG+R+R+AYKL+++ E  +       ++     +V+LG++
Sbjct: 7   SSKRWLREHHNDPYVQQARREGYRSRAAYKLMELQEVVKEDGKSLLLIPVGANVVELGAA 66

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGN 135
           PG W+QVA ++ G   +   VV ID+L M+P+ G +    DFLD D+     Q +   G 
Sbjct: 67  PGGWTQVAVKLAGVEGS---VVGIDLLAMDPVPGAEILVGDFLD-DAMLAQLQGLLHEGR 122

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G +  D LR  +L EAA  F  E L  GG+F VK F G   +D++  
Sbjct: 123 VDVVLSDMAPNMCGVKSADQLRGEALAEAAFQFVEENLKTGGNFAVKLFNGPGFHDMVKQ 182

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  F  V  VKP +SR+ S E +L+  GF+
Sbjct: 183 ARAMFTVVKVVKPDSSRSRSPEHYLVGMGFK 213


>gi|294142068|ref|YP_003558046.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           violacea DSS12]
 gi|293328537|dbj|BAJ03268.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           violacea DSS12]
          Length = 209

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV+ AQ  G R+R+A+KL +I EK ++++    +VDLG++PG WSQV
Sbjct: 9   SSSRWLQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDKLIRPGMTVVDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G G  D+VLSDM
Sbjct: 69  AVKLAG---DRGKVIACDILAMDPIVGVDFLQGDFREEKVLDALLTRVGDGKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     +++   G F VK FQG    + +  ++  F+ V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVMAPNGCFAVKVFQGEGFEEYMKSVRAAFKTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++L+A G++
Sbjct: 186 KTRKPDSSRARSREVYLVATGYK 208


>gi|76808881|ref|YP_333018.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
           pseudomallei 1710b]
 gi|121599034|ref|YP_992622.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei SAVP1]
 gi|217423678|ref|ZP_03455179.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 576]
 gi|238563619|ref|ZP_00438573.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei GB8 horse 4]
 gi|242315402|ref|ZP_04814418.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106b]
 gi|251767842|ref|ZP_02268580.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei PRL-20]
 gi|254199450|ref|ZP_04905816.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei FMH]
 gi|76578334|gb|ABA47809.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
           pseudomallei 1710b]
 gi|121227844|gb|ABM50362.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei SAVP1]
 gi|147749046|gb|EDK56120.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei FMH]
 gi|217393536|gb|EEC33557.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 576]
 gi|238520335|gb|EEP83796.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei GB8 horse 4]
 gi|242138641|gb|EES25043.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106b]
 gi|243061551|gb|EES43737.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei PRL-20]
          Length = 252

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 127/231 (54%), Gaps = 14/231 (6%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S+ ++ L +  KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++
Sbjct: 24  SNRQQSLHRMAKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIR 79

Query: 67  SNRRIVDLGSSPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKF 117
             + IVDLG++PGSWSQ A      G   +  R       ++A+D+L MEP+  V F + 
Sbjct: 80  PGQVIVDLGAAPGSWSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQG 139

Query: 118 DFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           DF +      + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   
Sbjct: 140 DFREESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPD 199

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G  LVK F G   + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 200 GALLVKCFHGSGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 250


>gi|167836218|ref|ZP_02463101.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           thailandensis MSMB43]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      GS  +  R       +VA+D+L MEPI  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGSRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREESVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|323526825|ref|YP_004228978.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1001]
 gi|323383827|gb|ADX55918.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1001]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 117/209 (55%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69

Query: 89  TGSNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
               A          +  ++A+DIL M+P+  V F + DF +      + + +G    DL
Sbjct: 70  LAKGAQRDAEREGGIDGTIIALDILPMDPVADVHFIQGDFREDSVLVQLEELVGERQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFKR 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  +K
Sbjct: 190 QFKVVAARKPKASRDKSSETFILGKHLKK 218


>gi|170030475|ref|XP_001843114.1| ribosomal RNA large subunit methyltransferase J [Culex
           quinquefasciatus]
 gi|167867355|gb|EDS30738.1| ribosomal RNA large subunit methyltransferase J [Culex
           quinquefasciatus]
          Length = 239

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 125/210 (59%), Gaps = 11/210 (5%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R +NDP+V+RA++  +R RSA+KLL+I++K+ I++    ++D G++PGSWSQ+
Sbjct: 27  SSQEWLTRQLNDPFVERAKMANYRCRSAFKLLEIDQKYNIIKPGFTVIDCGAAPGSWSQI 86

Query: 85  AARITGSNANNT-------RVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNP 136
           A  +  SNA+          V+ +D+L + PI         DF   +S + IR  +G   
Sbjct: 87  A--VKQSNADGAAPGKPKGTVIGVDLLQIYPIAHATTLGNTDFTRTESQDKIRSLLGEKR 144

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D VLSDMA    G R +D    ++LC +   FA+ M +     L+K +  G    +   
Sbjct: 145 IDCVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLMKVWDNGEVPALEKN 204

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +++++Q+V  +KP ASRA+S E F+LA+GF
Sbjct: 205 IQRYYQQVKRIKPRASRADSAENFVLARGF 234


>gi|332535916|ref|ZP_08411626.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034703|gb|EGI71252.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 209

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 121/209 (57%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL ++  + ++L+    +VDLG++P
Sbjct: 3   NKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           GSWSQ  A   G   +  +V+A DIL M+ + GV F + DF +      + + I G N D
Sbjct: 63  GSWSQYLAEKVG---DKGQVIACDILPMDSLAGVDFLQGDFREEAVLNALLKRIDGKNVD 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  ++
Sbjct: 120 VVLSDMAPNMSGNNSVDQAGSMYLVELALDMCSQVLKKNGAFIVKVFQGEGFDQYLQDVR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP ASRA S E++++A G++
Sbjct: 180 NSFKAVKIRKPDASRARSREVYIVATGYK 208


>gi|91784538|ref|YP_559744.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia xenovorans LB400]
 gi|122970262|sp|Q13W47|RLME_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91688492|gb|ABE31692.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 220

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ +++++ + IVDLGS+PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRAGQVIVDLGSTPGSWSQYARNK 69

Query: 89  TGSNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
               A          +  ++A+D+L MEPI  V F + DF +      + + +G    DL
Sbjct: 70  LAKGAQRDAEREGGIDGTIIALDLLPMEPIADVHFIQGDFREDSVIAQLEELVGERQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFKR 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  ++
Sbjct: 190 QFRVVAARKPKASRDKSSETFILGKHLKR 218


>gi|145589197|ref|YP_001155794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189040319|sp|A4SXL6|RLME_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|145047603|gb|ABP34230.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 14/215 (6%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           ++ WL  H+ DPYV+ AQ EG+RAR+ YKL +I+E+  ++++   IVDLGS+PGSWSQ V
Sbjct: 7   NKSWLQDHLTDPYVKMAQKEGYRARAVYKLSEIDEQDHLIKAGMTIVDLGSAPGSWSQYV 66

Query: 85  AARITGSNANNTR---------VVAIDILDMEPILGVKFFKFDFLD---LDSWE-FIRQA 131
             R+T    +N +         ++AIDIL ME I  V F + DF +   L + E  + ++
Sbjct: 67  RNRLTELGKSNPKIESGKPDGQIIAIDILPMEDIADVSFIQGDFREEEGLAALEALLPKS 126

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
             G  DLVLSDMA    G    D  R   L E A  FA   L   G  L+K F G   + 
Sbjct: 127 AEGKVDLVLSDMAPNLSGVGVADSARMAFLAEIALDFATAHLKPEGALLIKCFNGSGYSQ 186

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           I+   KK F+ V   KP ASRA+S E+FLL K  +
Sbjct: 187 IVESFKKVFKTVASRKPKASRAKSSEIFLLGKNLK 221


>gi|212634066|ref|YP_002310591.1| 23S rRNA methyltransferase J [Shewanella piezotolerans WP3]
 gi|226705314|sp|B8CKG5|RLME_SHEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|212555550|gb|ACJ28004.1| Ribosomal RNA large subunit methyltransferase J [Shewanella
           piezotolerans WP3]
          Length = 209

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +D YV+ AQ  G+R+R+A+K+ +I EK ++++    +VDLG++PG WSQV
Sbjct: 9   SSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G    D+VLSDM
Sbjct: 69  AVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKAVKEAFKTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E++L+A G++
Sbjct: 186 KTRKPDSSRPRSREVYLVATGYK 208


>gi|170727902|ref|YP_001761928.1| 23S rRNA methyltransferase J [Shewanella woodyi ATCC 51908]
 gi|226705315|sp|B1KRR8|RLME_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|169813249|gb|ACA87833.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella woodyi ATCC
           51908]
          Length = 209

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +D YV+ AQ  G+R+R+A+K+ +I EK ++++    +VDLG++PG WSQV
Sbjct: 9   SSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +N +V+A DIL M+PI+GV F + DF +    + +   +G    D+VLSDM
Sbjct: 69  AVKLAG---DNGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F VK FQG    + +  +++ F+ V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEYMKSVREAFKTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E++L+A G++
Sbjct: 186 KTRKPDSSRPRSREVYLVATGYK 208


>gi|77359818|ref|YP_339393.1| 23S rRNA methyltransferase J [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123587311|sp|Q3IE64|RLME_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|76874729|emb|CAI85950.1| ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) (Cell division protein ftsJ)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 209

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 121/209 (57%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL ++  + ++L+    +VDLG++P
Sbjct: 3   NKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQSRDKLLRPAMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           GSWSQ  A   G   +  +V+A DIL M+ + GV F + DF +      + + I G N D
Sbjct: 63  GSWSQYLAEKVG---DKGQVIACDILPMDSLAGVDFLQGDFREEAVLSALLKRIDGKNVD 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  ++
Sbjct: 120 VVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQFLQDVR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP ASRA S E++++A G++
Sbjct: 180 NSFKTVKIRKPDASRARSREVYIVATGYK 208


>gi|170695458|ref|ZP_02886603.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia graminis
           C4D1M]
 gi|170139649|gb|EDT07832.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia graminis
           C4D1M]
          Length = 220

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGS+PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSTPGSWSQYARNK 69

Query: 88  -ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
              GS  +  R       ++A+D+L MEP+  V F + DF +      + + +G    DL
Sbjct: 70  LAKGSQRDAERQGGIDGTIIALDLLPMEPVADVHFIQGDFREEAVLGQLEELVGERQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+   K+
Sbjct: 130 VISDMAPNLSGVALADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFKR 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  ++
Sbjct: 190 QFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|167587473|ref|ZP_02379861.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ubonensis
           Bu]
          Length = 220

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 122/220 (55%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQ----HWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G P DLV+SDMA    G    D  R   +C+ A  F+   L   G  LVK F G
Sbjct: 118 LEAVLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFSQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKIVAPRKPKASRDKSSETFILGRHLK 217


>gi|119774090|ref|YP_926830.1| 23S rRNA methyltransferase J [Shewanella amazonensis SB2B]
 gi|143461617|sp|A1S454|RLME_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119766590|gb|ABL99160.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           amazonensis SB2B]
          Length = 209

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  W+  H +D YV+ AQ  G R+R+A+KL ++ EK  +++    +VDLG++
Sbjct: 4   KKRSA--SSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDHLIKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +      + + +G    
Sbjct: 62  PGGWSQVAVKLVG---DRGKVIACDILPMDPIVGVDFLQGDFREDAVLNALLERVGDEKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +
Sbjct: 119 DVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+ V   KP +SRA S E++L+A G++
Sbjct: 179 REAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|296158196|ref|ZP_06841028.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. Ch1-1]
 gi|295891532|gb|EFG71318.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ +++++ + IVDLGS+PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRAGQVIVDLGSTPGSWSQYARNK 69

Query: 89  TGSNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
               A          +  ++A+D+L MEPI  V F + DF +      + + +G    DL
Sbjct: 70  LAKGAQRDAEREGGIDGTIIALDLLPMEPIADVHFIQGDFREDSVIAQLEELVGERQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+   K 
Sbjct: 130 VISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFKH 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  ++
Sbjct: 190 QFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|195395790|ref|XP_002056517.1| GJ10992 [Drosophila virilis]
 gi|194143226|gb|EDW59629.1| GJ10992 [Drosophila virilis]
          Length = 254

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 124/213 (58%), Gaps = 15/213 (7%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+DWL R + DPYV++A++  +R RSA+KLL++++K++IL+    ++D G++PGSW+QV
Sbjct: 39  SSQDWLIRQLADPYVEKARMLNFRCRSAFKLLEMDDKYKILKPGDVVLDCGAAPGSWTQV 98

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           AA  T +N    R     V +ID+L    + G   F   DF    + + +R+++ G   +
Sbjct: 99  AAERTNANGKVERAPRGAVYSIDLLHFHAVPGATIFGGMDFTTPLAQQRLRESLAGRQVN 158

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT----NDIL 193
            VLSDMA    G R +D     +LC     FAL M     + +VK +  G       DIL
Sbjct: 159 CVLSDMAPNATGVRMLDQESITNLCYEVLKFALAMSAPQANLVVKIWDNGDVPKLERDIL 218

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           C    H++KV  VKP ASR +S E FLLA+G++
Sbjct: 219 C----HYEKVKRVKPRASRGDSAEHFLLARGYK 247


>gi|56478166|ref|YP_159755.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
 gi|81356990|sp|Q5P1G0|RLME_AROAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56314209|emb|CAI08854.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
          Length = 207

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+NDPYVQRA+ EG+R+R+A+KL++++++ ++++S   +VDLG++PGSWSQV
Sbjct: 6   TSKAWMQEHVNDPYVQRAKSEGYRSRAAFKLIELDDRDRLMRSGMVVVDLGAAPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A R  G      RV A+D+L ++P+ GV+F + DF +      +   +GG P D+VLSDM
Sbjct: 66  ALRRVGREG---RVFALDLLPLDPLGGVEFIQGDFQEEPVLAELESRLGGLPVDVVLSDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D  R++ L E A  FA   L  GG F+VK FQG    +      KHF  +
Sbjct: 123 APNMSGIDTTDQARSIYLGELALEFAGHHLKPGGGFVVKVFQGQGFMEYRNEAAKHFHAL 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR  S E++L+  G+R
Sbjct: 183 HVRKPKASRDRSAEVYLVGVGYR 205


>gi|167625067|ref|YP_001675361.1| 23S rRNA methyltransferase J [Shewanella halifaxensis HAW-EB4]
 gi|189040337|sp|B0TQB0|RLME_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|167355089|gb|ABZ77702.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella halifaxensis
           HAW-EB4]
          Length = 209

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +D YV+ AQ  G R+R+A+K+ +I EK ++++    +VDLG++PG WSQV
Sbjct: 9   SSSRWMQEHFDDHYVKLAQKRGLRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPGGWSQV 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G    D+VLSDM
Sbjct: 69  AVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKAVKEAFKTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E++L+A G++
Sbjct: 186 KTRKPDSSRPRSREVYLVATGYK 208


>gi|331011490|gb|EGH91546.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 195

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV +R+ G      R++A 
Sbjct: 2   AQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIGGQG---RLIAS 58

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
           DIL+M+ I  V F + DF +    E I +A+G    DLV+SDMA    G   +D  R M 
Sbjct: 59  DILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAMF 118

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LCE A   A  +L  GGDFL+K FQG   +     ++K F KV   KP +SR  S E +L
Sbjct: 119 LCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQYL 178

Query: 221 LAKGFR 226
           LA+GFR
Sbjct: 179 LARGFR 184


>gi|152979916|ref|YP_001353928.1| 23S rRNA methylase [Janthinobacterium sp. Marseille]
 gi|189040693|sp|A6T081|RLME_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|151279993|gb|ABR88403.1| 23S rRNA methylase [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 122/205 (59%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           +++WL+ HINDPYV+ AQ EG+RAR+ YKL +I+E  ++++  + IVDLG++PGSWSQ V
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDETEKLIKPGQIIVDLGATPGSWSQYV 66

Query: 85  AARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
             +++GS     N  ++ +D+L MEPI  V F + DF + +  E + Q + G   DLV+S
Sbjct: 67  RNKLSGSVGGGINGTIIGLDMLPMEPIADVHFIQGDFREQEVLEQLEQVLQGRKVDLVIS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R + L + A  F    +   G  LVK F G   + I+   +  F+
Sbjct: 127 DMAPNLSGIAVADAARMIDLIDLAIDFTQHHMKPSGSLLVKCFNGSGYSYIVEKFRDEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V+  KP ASR +S E+FLL K  +
Sbjct: 187 TVVQKKPKASRDKSSEIFLLGKTLK 211


>gi|68074943|ref|XP_679388.1| ribosomal RNA methyltransferase [Plasmodium berghei strain ANKA]
 gi|56500124|emb|CAH98004.1| ribosomal RNA methyltransferase, putative [Plasmodium berghei]
          Length = 253

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 126/211 (59%), Gaps = 4/211 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+ N+    SS+ W+ R I D YV +A+ E +R+R+A+KL++++ K+  L+ N+ I+D+G
Sbjct: 23  KIYNKKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDIG 81

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           S PGSW QV    T +  N   ++AID   M+P+  V F K +    +  + +++ +   
Sbjct: 82  SYPGSWCQVILERTKNYTN--EIIAIDKKIMDPLPNVHFIKAEIGKDNVDDQLKEVLKDK 139

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D++LSD A   IG++  DHL +  L  + T F  + +NIGG ++VK + G  TN++  
Sbjct: 140 KIDIILSDAAVACIGNKIDDHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTNNLKT 199

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            LK  FQ V   KP ASR+ES E++L+ + F
Sbjct: 200 YLKTIFQYVNTAKPKASRSESREIYLVCRNF 230


>gi|145298036|ref|YP_001140877.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|158514048|sp|A4SJQ7|RLME_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|142850808|gb|ABO89129.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 209

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV++AQ  G R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ 
Sbjct: 9   SSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLRTGMTVVDLGAAPGGWSQF 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A    G   +N RV+A DIL M+PI GV F + DF +      +   +G +  D+V+SDM
Sbjct: 69  AVEQVG---DNGRVIACDILPMDPIAGVDFLQGDFREETVLGALLDRVGPDKVDVVMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +++D  R M L E A     ++L   G F+VK FQG   +  L  ++K F  V
Sbjct: 126 APNMSGTQQVDQARAMYLIELALDMCNQVLRTNGSFVVKVFQGEGFDAYLNEIRKLFSAV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++++A GF+
Sbjct: 186 KIRKPDSSRARSREVYIVATGFK 208


>gi|325524578|gb|EGD02605.1| ribosomal RNA large subunit methyltransferase E [Burkholderia sp.
           TJI49]
          Length = 220

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 121/220 (55%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IV LG+
Sbjct: 2   AKNRFNQ----HWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVALGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G P DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEDVLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217


>gi|330937938|gb|EGH41725.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 195

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV +R+ G      R++A 
Sbjct: 2   AQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIGGQG---RLIAS 58

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
           DIL+M+ I  V F + DF +    E I +A+G    DLV+SDMA    G   +D  R M 
Sbjct: 59  DILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAMF 118

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LCE A   A  +L  GGDFL+K FQG   +     ++K F KV   KP +SR  S E +L
Sbjct: 119 LCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQYL 178

Query: 221 LAKGFR 226
           LA+GFR
Sbjct: 179 LARGFR 184


>gi|221201968|ref|ZP_03575004.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2M]
 gi|221204902|ref|ZP_03577919.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2]
 gi|221213879|ref|ZP_03586852.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD1]
 gi|221166056|gb|EED98529.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD1]
 gi|221175759|gb|EEE08189.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2]
 gi|221178051|gb|EEE10462.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2M]
          Length = 220

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 121/220 (55%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQ----HWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDTVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHR 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEAVLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217


>gi|312795597|ref|YP_004028519.1| 23S rRNA Um2552 2'-O-methyltransferase [Burkholderia rhizoxinica
           HKI 454]
 gi|312167372|emb|CBW74375.1| 23S rRNA Um2552 2'-O-methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 120/214 (56%), Gaps = 11/214 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ +G+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 12  AKNRFNQS----WLHDHINDPYVKLAQRDGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 67

Query: 77  SPGSWSQVAARITGSNAN------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ A     + ++      +  ++A+D+L MEPI  V F + DF D      +  
Sbjct: 68  APGSWSQYARNKLAAGSHRASGGIDGTIIALDMLPMEPIADVTFIQGDFRDDAVLAQLEA 127

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   
Sbjct: 128 AVEGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLTSQGALLVKCFHGSGY 187

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           + I+   K  F+ V   KP ASR +S E F+L +
Sbjct: 188 SQIVERFKHQFRSVAARKPKASRDKSSETFILGR 221


>gi|157962886|ref|YP_001502920.1| 23S rRNA methyltransferase J [Shewanella pealeana ATCC 700345]
 gi|189040338|sp|A8H748|RLME_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157847886|gb|ABV88385.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella pealeana ATCC
           700345]
          Length = 209

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +D YV+ +Q  G R+R+A+K+ +I EK ++++    +VDLG++PG WSQ+
Sbjct: 9   SSSRWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPGGWSQI 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G    D+VLSDM
Sbjct: 69  AVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K+ F+ V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKEAFKTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E++L+A G++
Sbjct: 186 KTRKPDSSRPRSREVYLVATGYK 208


>gi|126175447|ref|YP_001051596.1| 23S rRNA methyltransferase J [Shewanella baltica OS155]
 gi|153001798|ref|YP_001367479.1| 23S rRNA methyltransferase J [Shewanella baltica OS185]
 gi|160876531|ref|YP_001555847.1| 23S rRNA methyltransferase J [Shewanella baltica OS195]
 gi|217972307|ref|YP_002357058.1| 23S rRNA methyltransferase J [Shewanella baltica OS223]
 gi|304410273|ref|ZP_07391892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS183]
 gi|307302016|ref|ZP_07581774.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           BA175]
 gi|189040333|sp|A3D7L4|RLME_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040335|sp|A6WRH7|RLME_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040336|sp|A9KZX9|RLME_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809559|sp|B8E6M4|RLME_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|125998652|gb|ABN62727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS155]
 gi|151366416|gb|ABS09416.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS185]
 gi|160862053|gb|ABX50587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS195]
 gi|217497442|gb|ACK45635.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS223]
 gi|304351682|gb|EFM16081.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS183]
 gi|306914054|gb|EFN44475.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           BA175]
 gi|315268725|gb|ADT95578.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS678]
          Length = 209

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  W+  H +D YV+ AQ  G R+R+A+KL +I +K Q+++    +VDLG++PG WSQ
Sbjct: 8   ASSNRWMLEHFDDHYVKLAQKMGLRSRAAFKLEEIQQKDQLIRPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
           VA ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G    D+VLSD
Sbjct: 68  VAVKLAG---DRGKVIACDILPMDPIVGVDFLQGDFREDKVLQALLTRVGDAKVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K  F+ 
Sbjct: 125 MAPNMSGSDSVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKAVKAVFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKTRKPDSSRARSREVYLVATGYK 208


>gi|327282720|ref|XP_003226090.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Anolis
           carolinensis]
          Length = 241

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 123/210 (58%), Gaps = 7/210 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G+   WL RH +DPYV++A+   +R RSA+KL++I++KH IL+    +VD G++PG+W+Q
Sbjct: 29  GAEHRWLERHFSDPYVKKARQRSYRCRSAFKLIEIDDKHGILRPGLHVVDCGTAPGAWAQ 88

Query: 84  VAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI-GGNP 136
           VA +   +  ++       V+  D+L + P+ G  F    D  D  + + IR ++  G  
Sbjct: 89  VAVQRVNAEGSDPDTPVGFVLGFDLLHISPLEGAVFLPHSDLTDPSTRQKIRDSLPKGKA 148

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G R++DH R + LC +    A  +L+ GG  L K ++   +  +   L
Sbjct: 149 DVVLSDMAPNATGIRELDHDRLIRLCLSLLDLAPHILHPGGTLLCKFWESKESRLLQKRL 208

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            + F++V  +KP ASR ES EM+ LAK ++
Sbjct: 209 TQDFKEVKSIKPQASRKESAEMYYLAKLYK 238


>gi|148979038|ref|ZP_01815283.1| 23S rRNA methyltransferase J [Vibrionales bacterium SWAT-3]
 gi|145962011|gb|EDK27299.1| 23S rRNA methyltransferase J [Vibrionales bacterium SWAT-3]
          Length = 209

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L     +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLSPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   +N +++A D+L M+PI GV F + DF +    E + + I  N  D+V+SD
Sbjct: 68  YAAKIVG---DNGQIIACDLLPMDPIAGVSFLQGDFREDAVLEALLERIQPNMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  +++ F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLATDGSFVVKVFQGEGFDQYVKDVREMFKT 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKVRKPDSSRARSREVFIVATGYK 208


>gi|53718994|ref|YP_107980.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|53725546|ref|YP_102539.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 23344]
 gi|124383467|ref|YP_001026576.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10229]
 gi|126438553|ref|YP_001058524.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 668]
 gi|126450179|ref|YP_001080139.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10247]
 gi|126453006|ref|YP_001065784.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106a]
 gi|167719064|ref|ZP_02402300.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei DM98]
 gi|167738062|ref|ZP_02410836.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 14]
 gi|167815246|ref|ZP_02446926.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 91]
 gi|167845199|ref|ZP_02470707.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei B7210]
 gi|167893751|ref|ZP_02481153.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 7894]
 gi|167902199|ref|ZP_02489404.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910441|ref|ZP_02497532.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 112]
 gi|167918467|ref|ZP_02505558.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei BCC215]
 gi|254178317|ref|ZP_04884972.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 10399]
 gi|254180203|ref|ZP_04886802.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1655]
 gi|254188378|ref|ZP_04894889.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254198319|ref|ZP_04904741.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei S13]
 gi|254205763|ref|ZP_04912115.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei JHU]
 gi|254261558|ref|ZP_04952612.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1710a]
 gi|254358836|ref|ZP_04975109.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei 2002721280]
 gi|81379953|sp|Q63V86|RLME_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81605295|sp|Q62L80|RLME_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459671|sp|Q3JTT5|RLME_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513524|sp|A3NTW3|RLME_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040695|sp|A3N853|RLME_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040700|sp|A1V319|RLME_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044089|sp|A3MIQ3|RLME_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044090|sp|A2S3Q7|RLME_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|52209408|emb|CAH35353.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|52428969|gb|AAU49562.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 23344]
 gi|124291487|gb|ABN00756.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10229]
 gi|126218046|gb|ABN81552.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 668]
 gi|126226648|gb|ABN90188.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106a]
 gi|126243049|gb|ABO06142.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10247]
 gi|147753206|gb|EDK60271.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei JHU]
 gi|148027963|gb|EDK85984.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei 2002721280]
 gi|157936057|gb|EDO91727.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699356|gb|EDP89326.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 10399]
 gi|169655060|gb|EDS87753.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei S13]
 gi|184210743|gb|EDU07786.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1655]
 gi|254220247|gb|EET09631.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1710a]
          Length = 220

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       ++A+D+L MEP+  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|260220960|emb|CBA29048.1| Ribosomal RNA large subunit methyltransferase J [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 205

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 6/203 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARI 88
           ++ HINDPYV+ A  EG+RAR+AYKL +I+E   +++  + +VDLG +PG+WSQ +  R+
Sbjct: 1   MHDHINDPYVKLANKEGYRARAAYKLKEIDEALHLVKPGQLVVDLGCTPGAWSQYLRRRM 60

Query: 89  TGSNAN----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
           +   A     N  ++ +D+L MEPI GV F + DF ++++   +  A+GG   DLV+SDM
Sbjct: 61  SPQGAAVGEMNGTIIGLDLLPMEPIEGVTFIQGDFREVETLAKLEAALGGQKADLVVSDM 120

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D  R   L E A  FA   +   G  + K F GG+ N+++   K+ F  V
Sbjct: 121 APNLSGISSADAARVEYLVELAIEFAQNHMKPQGALVAKVFHGGSYNEVVQRFKQAFVTV 180

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
             +KP ASR  S E FL+  G +
Sbjct: 181 KPLKPKASRDRSSETFLIGLGLK 203


>gi|283836275|ref|ZP_06356016.1| ribosomal RNA large subunit methyltransferase J [Citrobacter
           youngae ATCC 29220]
 gi|291067638|gb|EFE05747.1| ribosomal RNA large subunit methyltransferase J [Citrobacter
           youngae ATCC 29220]
          Length = 209

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    IVDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G   N+ R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYAVTQIG---NSGRIIACDLLPMDPIVGVDFLQGDFRDELVLQALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRAMYLVELALGMARDVLAPGGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|187924839|ref|YP_001896481.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
           phytofirmans PsJN]
 gi|226703289|sp|B2SZR9|RLME_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|187716033|gb|ACD17257.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
           phytofirmans PsJN]
          Length = 220

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 115/209 (55%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGS PGSWSQ A   
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDRLIRPGQVIVDLGSVPGSWSQYARNK 69

Query: 89  TGSNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
               A          +  ++A+DIL MEPI  V F + DF +      + + +G    DL
Sbjct: 70  LAKGAQRDAEREGGIDGTIIALDILPMEPIADVTFIQGDFREDTVLGQLEELVGERQVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+   K 
Sbjct: 130 VISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKQDGALLVKCFHGSGYSQIVEKFKH 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L K  ++
Sbjct: 190 QFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|167582305|ref|ZP_02375179.1| FtsJ-like methyltransferase [Burkholderia thailandensis TXDOH]
          Length = 220

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       +VA+D+L MEPI  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGRRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREEAVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217


>gi|149539804|ref|XP_001516553.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 243

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 123/205 (60%), Gaps = 7/205 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+RH+ DP+V+  +   +R RSA+KLL+INEK QIL    R++D G++PG+WSQVA ++
Sbjct: 31  WLSRHLKDPFVKATRENNYRCRSAFKLLEINEKQQILSPGLRVLDCGAAPGAWSQVAIKM 90

Query: 89  TGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGG-NPDLVLS 141
             +   + +     V+ +D+L + P+ G  F    D  D    E I++ +     D++LS
Sbjct: 91  VNAAGTDPKSPIGFVLGVDLLHIFPLEGATFLCPADVTDSRIRERIQELLPERKADVILS 150

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G +++DH + +S+C +    +  +L  GG FL K + GG  + +   L++ FQ
Sbjct: 151 DMAPNATGIKELDHQKLISMCLSLLDLSSSILISGGTFLCKLWDGGQKHLLQSRLEQQFQ 210

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +V  +KP ASR ES EM+ LAK ++
Sbjct: 211 EVRIIKPQASRKESSEMYFLAKFYQ 235


>gi|161525194|ref|YP_001580206.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
           ATCC 17616]
 gi|189350067|ref|YP_001945695.1| cell division protein methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|226703287|sp|A9ACL8|RLME_BURM1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160342623|gb|ABX15709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
           ATCC 17616]
 gi|189334089|dbj|BAG43159.1| cell division protein methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 121/220 (55%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQ----HWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEAVLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217


>gi|156392658|ref|XP_001636165.1| predicted protein [Nematostella vectensis]
 gi|156223265|gb|EDO44102.1| predicted protein [Nematostella vectensis]
          Length = 210

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL RH+ DPYV++A  + +R RSAYKL+Q+++K+  L     ++D G+SPGSW+QV
Sbjct: 4   SSTRWLRRHLADPYVKKASEDNYRCRSAYKLIQLDDKYHFLLPGHVVIDCGASPGSWTQV 63

Query: 85  AAR--ITGSNANNTRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           A    I         VVAID+LD++ I G V   + DF    +   I   +     +++L
Sbjct: 64  AVERVIPNIGGEQGLVVAIDLLDIKAIPGAVIMGRCDFTHKATQTKILSLLPSFGVNVIL 123

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA  + G+  +DH   + LC++A  F  + L  GG FL K + G  T D + +LK+ F
Sbjct: 124 SDMAPNSSGNHSLDHEAILDLCDSAFEFGQKTLRPGGVFLCKLWDGRGTVDFMQMLKRSF 183

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFRK 227
           + V   KP ASR +S E+++ A GF K
Sbjct: 184 KLVKKCKPQASRKDSPEIYIYAAGFIK 210


>gi|148244491|ref|YP_001219185.1| cell division protein methyltransferase FtsJ [Candidatus
           Vesicomyosocius okutanii HA]
 gi|158514271|sp|A5CX75|RLME_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146326318|dbj|BAF61461.1| cell division protein methyltransferase FtsJ [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 210

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S + SSR W+  HIND +V+ A+  G+R+R+ YKL+++  K + ++   +++DLG++PGS
Sbjct: 2   SKKDSSRRWMREHINDKFVKNAKKAGYRSRAVYKLIEVINKEKFIKPGNKVIDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLV 139
           WSQ+A +  G +    +V+A DIL+++PI G+ F + DF +   +E  +   +    ++V
Sbjct: 62  WSQMAIKAVGKSG---QVIANDILNIKPIDGIDFLQGDFTENSVYEALLNLTMNQKVNVV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSD+A    G   +D  ++M LCE A   A++ L   G F VK FQG   +  +   + +
Sbjct: 119 LSDIAPNISGQPSVDIPKSMYLCELALDIAIKSLTPSGYFFVKVFQGDGFDMFVESCRTY 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASR  S E++LLA   +
Sbjct: 179 FSYVTIHKPKASRTRSKEVYLLANKLK 205


>gi|83718666|ref|YP_443289.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
 gi|167621275|ref|ZP_02389906.1| FtsJ-like methyltransferase [Burkholderia thailandensis Bt4]
 gi|257139525|ref|ZP_05587787.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
 gi|123536418|sp|Q2SUW0|RLME_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83652491|gb|ABC36554.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   +  R       ++A+D+L MEPI  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGRRRDAVREGGIDGTIIALDMLPMEPIADVHFIQGDFREETVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217


>gi|86148134|ref|ZP_01066433.1| cell division protein FtsJ [Vibrio sp. MED222]
 gi|218710452|ref|YP_002418073.1| 23S rRNA methyltransferase J [Vibrio splendidus LGP32]
 gi|254809562|sp|B7VJI4|RLME_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|85834051|gb|EAQ52210.1| cell division protein FtsJ [Vibrio sp. MED222]
 gi|218323471|emb|CAV19648.1| 23S rRNA methylase [Vibrio splendidus LGP32]
          Length = 209

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L     IVDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLTPGMTIVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   +N +++A D+L M+PI GV F + DF +    + + + I  N  D+V+SD
Sbjct: 68  YAAKIIG---DNGQIIACDLLPMDPIAGVSFLQGDFREEAVLDALLERIQPNMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  +++ F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLATNGSFVVKVFQGEGFDQYVKDVREMFKT 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKVRKPDSSRARSREVFIVATGYK 208


>gi|237730099|ref|ZP_04560580.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
 gi|226908705|gb|EEH94623.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
          Length = 209

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    IVDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G   N  R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYAVTQIG---NTGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRAMYLVELALGMARDVLAPGGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|186475643|ref|YP_001857113.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
           STM815]
 gi|226703288|sp|B2JFN9|RLME_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|184192102|gb|ACC70067.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
           STM815]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 123/209 (58%), Gaps = 10/209 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAAR 87
           WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ V  +
Sbjct: 10  WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYVRNK 69

Query: 88  IT-GSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           ++ G + +  R       ++A+D+L MEPI  V F + DF + +    + + +G  + DL
Sbjct: 70  LSQGKHRDAQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDNVLAQLEEVVGDRDVDL 129

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K 
Sbjct: 130 VISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKH 189

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR +S E F+L +  ++
Sbjct: 190 QFKTVAARKPKASRDKSSETFILGRHLKR 218


>gi|124512936|ref|XP_001349824.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|23615241|emb|CAD52231.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 288

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 24/237 (10%)

Query: 10  RRGLTQ---KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           +RG  +   KV N+    +SR W+ R I+D YV RA+ + +R+R+AYKL++++ K+  L+
Sbjct: 32  KRGYKEAAPKVFNKKSSHTSR-WIQRQISDRYVLRAKNDNYRSRAAYKLIELDNKYLFLK 90

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK---------- 116
            N+ I+D+G  PGSW QV    T +  N  +++ ID   M+PI  V F +          
Sbjct: 91  KNKIILDIGCYPGSWCQVILERTKNYKN--KIIGIDKKIMDPIPNVYFIQGEIGKDNMNN 148

Query: 117 ------FDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
                  D ++ +S ++  + I  +   D++LSD A P IG++  DHL +  L  + T F
Sbjct: 149 IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHF 208

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             + +NIGG ++VK + G  TN++   LK  FQ V   KP ASR ES E++L+ K F
Sbjct: 209 MEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNF 265


>gi|84387293|ref|ZP_00990314.1| cell division protein FtsJ [Vibrio splendidus 12B01]
 gi|84377940|gb|EAP94802.1| cell division protein FtsJ [Vibrio splendidus 12B01]
          Length = 209

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+  G+R+R+ +K+ +I  K ++L     IVDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKRGYRSRAYFKMEEIQTKDKLLTPGMTIVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   +N +++A D+L M+PI GV F + DF +    + + + I  N  D+V+SD
Sbjct: 68  YAAKIIG---DNGQIIACDLLPMDPIAGVSFLQGDFREEAVLDALLERIQPNMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  +++ F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLATNGSFVVKVFQGEGFDQYVKDVREMFKT 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKVRKPDSSRARSREVFIVATGYK 208


>gi|88608723|ref|YP_506429.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           sennetsu str. Miyayama]
 gi|123491814|sp|Q2GDL7|RLME_NEOSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88600892|gb|ABD46360.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           sennetsu str. Miyayama]
          Length = 213

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 5/204 (2%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
           C  SS  WL RH+NDP+V++A+ E +R+R+AYKLL+I+EK  +++    +++LGS+PG W
Sbjct: 11  CTASSSRWLYRHVNDPFVKKAKAEQYRSRAAYKLLEIDEKFNLIRKGFVVLELGSAPGGW 70

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           SQV A I        R++A+D+ DM+PI GV+  K D ++L   E      G   D+++S
Sbjct: 71  SQVIADILNGTG---RLIAVDLADMDPISGVEVVKLD-IELQRKELYEYISGVELDVIVS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN-DILCLLKKHF 200
           D+A    G R  D + ++ L E    +A   L   G  + K  +G       +  L+K F
Sbjct: 127 DLAPSASGSRVTDSISSIRLAELVLHYAKNSLKKFGTVVTKILRGSEDEYRFVNSLRKQF 186

Query: 201 QKVIHVKPVASRAESVEMFLLAKG 224
           +K+ + KP ASR  S E++L+  G
Sbjct: 187 KKIEYFKPDASRKASREIYLILLG 210


>gi|170717397|ref|YP_001784501.1| 23S rRNA methyltransferase J [Haemophilus somnus 2336]
 gi|168825526|gb|ACA30897.1| ribosomal RNA large subunit methyltransferase J [Haemophilus somnus
           2336]
          Length = 209

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 6/209 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFKHGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A R  G   +  RV+A DIL+M+PI+GV F + DF D +  + + + +G    
Sbjct: 62  PGGWSQYAVRQIG---DLGRVIACDILEMDPIVGVDFLQGDFRDENVLQALLERVGEKKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  +
Sbjct: 119 DVVMSDMAPNFSGMPAVDIPRAMYLVELALDMCKQVLATNGCFVVKVFQGEGFDDYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  F  V   KP ASR  S E++++A G+
Sbjct: 179 RSLFNTVKVRKPEASRGRSREVYIVAMGY 207


>gi|83316088|ref|XP_731073.1| cell division protein FtsJ [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490998|gb|EAA22638.1| FtsJ cell division protein, putative [Plasmodium yoelii yoelii]
          Length = 258

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 126/211 (59%), Gaps = 4/211 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+ N+    SS+ W+ R I D YV +A+ E +R+R+A+KL++++ K+  L+ N+ I+D+G
Sbjct: 28  KIYNKKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDIG 86

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           S PGSW QV    T +  N   ++AID   M+P+  V F K +    +  + +++ +   
Sbjct: 87  SYPGSWCQVILERTKNYTN--EIIAIDKKIMDPLPNVHFIKAEIGKDNVDDQLKEVLKDK 144

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D++LSD A   IG++  DHL +  L  + T F  + +NIGG ++VK + G  T+++  
Sbjct: 145 KIDIILSDAAVACIGNKIDDHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTDNLKT 204

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            LK  FQ V   KP ASR+ES E++L+ + F
Sbjct: 205 YLKTIFQYVNTAKPKASRSESREIYLVCRNF 235


>gi|270265052|ref|ZP_06193315.1| hypothetical protein SOD_k00880 [Serratia odorifera 4Rx13]
 gi|270040986|gb|EFA14087.1| hypothetical protein SOD_k00880 [Serratia odorifera 4Rx13]
          Length = 209

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G N    R++A DIL M+PI+GV F + DF D    + + + +G +   
Sbjct: 63  GGWSQYVVTQIGGNG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGESKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALGMCRDVLAPGGSFLVKVFQGDGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|312884009|ref|ZP_07743726.1| 23S rRNA methyltransferase J [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368467|gb|EFP96002.1| 23S rRNA methyltransferase J [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 209

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+ N  +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQNKDKLLKPNMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G      +++A D+L M+PI GV F + DF D    + + + I     D+V+SD
Sbjct: 68  FAAKIVGEKG---QIIACDLLPMDPISGVSFLQGDFRDEAVLDALLERISPEMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   ++ +  +++ F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDNFVKEVRELFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKVRKPDSSRARSREVFIVATGYK 208


>gi|226329691|ref|ZP_03805209.1| hypothetical protein PROPEN_03603 [Proteus penneri ATCC 35198]
 gi|225202877|gb|EEG85231.1| hypothetical protein PROPEN_03603 [Proteus penneri ATCC 35198]
          Length = 209

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G+R+R+ +KL +I +   I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ   +  GS     R++A D+L M+PI+GV F + DF D    + +   +G N   
Sbjct: 63  GGWSQYVVQKLGSKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGENKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPGGSFIVKVFQGEGFDEYLGQIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASR+ S E++++A G
Sbjct: 180 SLFTKVKVRKPDASRSRSREVYIVATG 206


>gi|84996593|ref|XP_953018.1| ribosomal RNA methyltransferase (FtsJ homologue) [Theileria
           annulata strain Ankara]
 gi|65304014|emb|CAI76393.1| ribosomal RNA methyltransferase (FtsJ homologue), putative
           [Theileria annulata]
          Length = 237

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 117/201 (58%), Gaps = 1/201 (0%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S +W+ R I D Y+ +  ++ +R+RSAYKL+++++K+ I + N+ +V+LG  PG W+QVA
Sbjct: 14  SSEWVRRQITDRYLIQKHIDNYRSRSAYKLIELDDKYFIFRKNQTVVELGCYPGGWAQVA 73

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
              T + A+++RV+ ID   ++PI    F K +  D ++   +   + G   D+VLSD+A
Sbjct: 74  LERTLTGASSSRVIGIDKTQIDPIPNYDFIKGEINDQETHNKLLTLLDGVKADVVLSDLA 133

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G +  DHL +  LC  A     +++ +GG F+VK F GG  +     L+  F +V 
Sbjct: 134 PNCTGIKMDDHLNSAELCLQAASLMEKIITVGGTFVVKMFMGGQLDRYKTYLRSLFSEVR 193

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP A R+ES EM+ + K F
Sbjct: 194 SAKPKACRSESKEMYFVCKNF 214


>gi|292493675|ref|YP_003529114.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus halophilus
           Nc4]
 gi|291582270|gb|ADE16727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus halophilus
           Nc4]
          Length = 212

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           +G S  WL  H  DPYV +A+ +G+R+R+ +KL +I+ + ++L+ +  +VDLG++PG WS
Sbjct: 5   KGHSARWLREHFRDPYVTKAKAQGYRSRAVFKLQEIDTRERLLRPSMVVVDLGAAPGGWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
           Q A    G+     +V+A+DIL M P  GV+F + DF + +    ++  + G   DLV+S
Sbjct: 65  QWAIEQVGAQG---QVIALDILPMVPPAGVQFIQGDFCEDNVLAELQNTLAGRVVDLVMS 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D  R + L E A  FA E L   G FL+KTFQG     +   +++ F 
Sbjct: 122 DMAPNMSGMAAVDQPRAIYLGELALAFAQEHLGPEGSFLLKTFQGEGFEALYEAIRQEFS 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
            V   KP ASR  S E++++A+  R+
Sbjct: 182 GVRIKKPSASRGRSREVYIVARRPRR 207


>gi|89900795|ref|YP_523266.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodoferax ferrireducens
           T118]
 gi|122479248|sp|Q21WW8|RLME_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|89345532|gb|ABD69735.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodoferax ferrireducens
           T118]
          Length = 224

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 116/212 (54%), Gaps = 11/212 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +R WLN H+ND YV+ A+LEG+RAR+AYKL +I+E   +++  + +VDLGS+PG+WSQ  
Sbjct: 11  NRAWLNDHVNDTYVKLAKLEGYRARAAYKLKEIDETLGLIKPGQLVVDLGSTPGAWSQYV 70

Query: 86  ARITGSNAN----------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG- 134
            R                 N  ++A+DIL MEP+ GV F + DF + D    +   + G 
Sbjct: 71  RRKMSPKTATGGGAAVGALNGTIIALDILPMEPVEGVVFLQGDFRESDVLLQLEAEMKGR 130

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSDMA    G    D  R  +L E A  FA   +   G  + K F G + + ++ 
Sbjct: 131 QADLVLSDMAPNLSGIDSADAARIENLVELALEFAQNHMKPEGALVAKVFHGASYDPLVK 190

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             K+ F  V  +KP ASR +S E FL+  G +
Sbjct: 191 RFKETFLLVKRIKPKASRDKSSETFLVGLGLK 222


>gi|153871222|ref|ZP_02000449.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Beggiatoa sp. PS]
 gi|152072314|gb|EDN69553.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Beggiatoa sp. PS]
          Length = 212

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 120/204 (58%), Gaps = 8/204 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +RDW   H N+ YV++A +EG+R+R+ YKL +I+ + ++ +    IVDLG++PG WSQ  
Sbjct: 9   TRDWHKEHSNNQYVKQANIEGYRSRAVYKLTEIDARDRLFRPGMTIVDLGAAPGGWSQWI 68

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD---LDSWEFIRQAIGGNPDLVLSD 142
           AR         ++ A+DIL ++P+  V F + DF +   LD+   +        DLV+SD
Sbjct: 69  AR---RFEKQVKLFALDILPIKPLPDVTFIQGDFREQTVLDT--LLNHLDKKKVDLVISD 123

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G + ID  R + L E A  FAL++L   G FL K FQG   +     LK HF++
Sbjct: 124 MAPNISGIKAIDQPRIIELAELARDFALDVLITNGHFLTKVFQGEDFDIFTKSLKSHFKQ 183

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR++S E+++LAK  +
Sbjct: 184 VVIRKPTASRSQSSEVYVLAKQLK 207


>gi|206577505|ref|YP_002236409.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae 342]
 gi|288933393|ref|YP_003437452.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           variicola At-22]
 gi|290511556|ref|ZP_06550925.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp.
           1_1_55]
 gi|226703308|sp|B5XSW2|RLME_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|206566563|gb|ACI08339.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae 342]
 gi|288888122|gb|ADC56440.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           variicola At-22]
 gi|289776549|gb|EFD84548.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp.
           1_1_55]
          Length = 209

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    IVDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G   N+ R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYAVTQIG---NSGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   + ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|268592832|ref|ZP_06127053.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rettgeri DSM 1131]
 gi|291311618|gb|EFE52071.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rettgeri DSM 1131]
          Length = 209

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 118/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQGDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G   +N RV+A D+L M+PI+GV F + DF D      + + +G     
Sbjct: 63  GGWSQYVVSQIG---HNGRVIACDLLPMDPIVGVDFLQGDFRDEAVLAALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A      +L  GG F+VK FQG   +D L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDDYLRDIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP +SRA S E++++A G +
Sbjct: 180 SLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|157368729|ref|YP_001476718.1| 23S rRNA methyltransferase J [Serratia proteamaculans 568]
 gi|189040332|sp|A8G900|RLME_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157320493|gb|ABV39590.1| ribosomal RNA large subunit methyltransferase J [Serratia
           proteamaculans 568]
          Length = 209

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V  +I GS     R++A DIL M+PI+GV F + DF D    + + + +G +  
Sbjct: 63  GGWSQYVVTQIGGSG----RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGESKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALGMCRDVLAPGGSFLVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|113460867|ref|YP_718934.1| 23S rRNA methyltransferase J [Haemophilus somnus 129PT]
 gi|122945233|sp|Q0I2R1|RLME_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|112822910|gb|ABI24999.1| 23S rRNA Um-2552 2'-O-methyltransferase [Haemophilus somnus 129PT]
          Length = 209

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 6/209 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFKHGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A R  G   +  RV+A DIL+M+PI+GV F + DF D +  + + + +G    
Sbjct: 62  PGGWSQYAIRQIG---DLGRVIACDILEMDPIVGVDFLQGDFRDENVLQALLERVGEKKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  +
Sbjct: 119 DVVMSDMAPNFSGMPAVDIPRAMYLVELALDMCKQVLATNGCFVVKVFQGEGFDDYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  F  V   KP ASR  S E++++A G+
Sbjct: 179 RSLFNTVKVRKPEASRGRSREVYIVAMGY 207


>gi|152979125|ref|YP_001344754.1| 23S rRNA methyltransferase J [Actinobacillus succinogenes 130Z]
 gi|226703280|sp|A6VPC2|RLME_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150840848|gb|ABR74819.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           succinogenes 130Z]
          Length = 208

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 119/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A    GS     R++A DIL+M+PI+GV F + DF D +    + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILEMDPIVGVDFLQGDFRDENVLAALLERVGESKVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLTANGSFVVKVFQGEGFDEYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP ASR  S E++++A G++
Sbjct: 179 SLFKVVKVRKPEASRGRSREVYIVAIGYK 207


>gi|330830896|ref|YP_004393848.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
           B565]
 gi|328806032|gb|AEB51231.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
           B565]
          Length = 209

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV++AQ  G R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ 
Sbjct: 9   SSTRWLKEHFDDQYVKKAQKMGLRSRAVFKIDEIQGKDRLLKHGMTVVDLGAAPGGWSQF 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A    G   ++ RV+A DIL M+PI GV F + DF +      + + +G +  D+V+SDM
Sbjct: 69  AVEQVG---DSGRVIACDILPMDPIAGVDFLQGDFREETVLGALLERVGPDKVDVVMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +++D  R M L E A     ++L   G F+VK FQG   +  L  ++K F  V
Sbjct: 126 APNMSGTQQVDQARAMYLVELALDMCNQVLRSDGSFVVKVFQGEGFDAYLNEIRKLFSAV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++++A GF+
Sbjct: 186 KIRKPDSSRARSREVYIVATGFK 208


>gi|198454814|ref|XP_001359736.2| GA11008 [Drosophila pseudoobscura pseudoobscura]
 gi|198132965|gb|EAL28888.2| GA11008 [Drosophila pseudoobscura pseudoobscura]
          Length = 249

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 12  GLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           G   K + R+ +G   SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL++ 
Sbjct: 20  GKYAKQQPRNLKGKSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYKILKTG 79

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDL 122
             ++D G++PGSW+QVA   T ++    R     V +ID+L    + G   +   DF   
Sbjct: 80  DAVLDCGAAPGSWTQVAVERTNAHGKMERAPVGAVFSIDLLHFHAVPGATIYGGMDFTTP 139

Query: 123 DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            S + +R+A+ G   + VLSDMA    G R +D     +LC     FAL M     + +V
Sbjct: 140 LSQQRLREALAGRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVV 199

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +  G    +   + K ++KV  VKP ASR +S E FL+A+G++
Sbjct: 200 KVWDNGDVPKLERNMLKFYEKVKRVKPRASRGDSAEHFLVARGYK 244


>gi|152972103|ref|YP_001337249.1| 23S rRNA methyltransferase J [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896686|ref|YP_002921431.1| 23S rRNA methyltransferase J [Klebsiella pneumoniae NTUH-K2044]
 gi|262042738|ref|ZP_06015892.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|329997734|ref|ZP_08302902.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp. MS
           92-3]
 gi|189040694|sp|A6TEJ8|RLME_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150956952|gb|ABR78982.1| 23S rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238549013|dbj|BAH65364.1| 23S rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039963|gb|EEW41080.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328538923|gb|EGF64982.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp. MS
           92-3]
          Length = 209

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G   N+ R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYAVTQIG---NSGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   + ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|212710001|ref|ZP_03318129.1| hypothetical protein PROVALCAL_01052 [Providencia alcalifaciens DSM
           30120]
 gi|212687410|gb|EEB46938.1| hypothetical protein PROVALCAL_01052 [Providencia alcalifaciens DSM
           30120]
          Length = 209

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 119/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ    + G   +N R++A D+L M+PI+GV F + DF D      + + +G     
Sbjct: 63  GGWSQY---VVGQIGHNGRIIACDLLPMDPIVGVDFLQGDFRDDAVLAALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A      +L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDEYLRDIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP +SRA S E++++A G +
Sbjct: 180 SLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|238026783|ref|YP_002911014.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia glumae
           BGR1]
 gi|237875977|gb|ACR28310.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia glumae
           BGR1]
          Length = 220

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G N +  R       +VA+D+L MEP+  V F + DF +      
Sbjct: 58  APGSWSQYARNKLALGKNRDAQREGGIDGMIVALDMLPMEPVADVHFIQGDFREDAVLHQ 117

Query: 128 IRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  F+   L   G  LVK F G
Sbjct: 118 LEALLDGRVVDLVISDMAPNLSGVASADAARIEHVCDLALEFSQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFRTVAPRKPKASRDKSSETFILGRHLK 217


>gi|253686966|ref|YP_003016156.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259494567|sp|C6DKI3|RLME_PECCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|251753544|gb|ACT11620.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 209

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G N    R++A DIL M+PI+GV F + DF D    + + + +G +   
Sbjct: 63  GGWSQYVVTQIGGNG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLAPGGSFLVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|88860503|ref|ZP_01135141.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           tunicata D2]
 gi|88817701|gb|EAR27518.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           tunicata D2]
          Length = 209

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 116/204 (56%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ WL  H +D YV  AQ  G R+R+ +KL ++  K ++++    +VDLG++PGSWSQ
Sbjct: 8   ASSKRWLMEHFDDHYVLEAQKRGLRSRAMFKLEELQTKDKLIKDGMTVVDLGAAPGSWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSD 142
             A +TG      +V+A DIL M+P+ GV+F + DF +      + + I G N D+VLSD
Sbjct: 68  YVAELTGFKG---KVIACDILPMDPLAGVEFLQGDFREESVLNALLERIDGKNVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    GH  +D   +M L E A     ++L   G F VK FQG      +  ++  F  
Sbjct: 125 MAPNMSGHLSVDQAGSMYLVELALDMCHQVLKKNGSFAVKVFQGEGFEQYVQDVRSCFTT 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++L+A G++
Sbjct: 185 VKIRKPDSSRARSREVYLVATGYK 208


>gi|197287223|ref|YP_002153095.1| 23S rRNA methyltransferase J [Proteus mirabilis HI4320]
 gi|227357082|ref|ZP_03841452.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Proteus mirabilis ATCC 29906]
 gi|226705299|sp|B4F2B2|RLME_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|194684710|emb|CAR46685.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Proteus mirabilis HI4320]
 gi|227162774|gb|EEI47737.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Proteus mirabilis ATCC 29906]
          Length = 209

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+A+ +G+R+R+ +KL +I +   I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAKKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ   +  G   N  R++A D+L M+PI+GV F + DF D    + +   +G N   
Sbjct: 63  GGWSQYVVQQLG---NKGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDNKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPGGSFIVKVFQGEGFDEYLGQIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASR+ S E++++A G
Sbjct: 180 SLFTKVKVRKPDASRSRSREVYIVATG 206


>gi|91089457|ref|XP_968154.1| PREDICTED: similar to cell division protein ftsj [Tribolium
           castaneum]
 gi|270012568|gb|EFA09016.1| hypothetical protein TcasGA2_TC006724 [Tribolium castaneum]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 124/210 (59%), Gaps = 7/210 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS +WL+R + DPYV++A++  +R RSA+KLL+I+++ +IL+    ++D G++PGSWSQ
Sbjct: 15  ASSHEWLSRQLTDPYVEKAKIMNYRCRSAFKLLEIDDRFKILRPGFVVIDCGAAPGSWSQ 74

Query: 84  VAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGG-NP 136
           VA R   S+ ++ +     V++ID   +  I G       DF D+ S E + + +GG   
Sbjct: 75  VAVRRVNSDGSDPKQAQGLVLSIDKQQIFAINGATILGNLDFTDVKSQEILVEVLGGKKA 134

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D V+SDMA    G +++D+   + LC +   FA++    G   +VK +Q G    +    
Sbjct: 135 DAVISDMAPNASGFKELDNENIIKLCYSVLRFAVQNSRAGACLVVKLWQCGQAKQLENDF 194

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K +  V +VKP +SR++S E+FLL + F+
Sbjct: 195 SKFYASVKYVKPNSSRSDSAEIFLLGRDFK 224


>gi|317046734|ref|YP_004114382.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. At-9b]
 gi|316948351|gb|ADU67826.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. At-9b]
          Length = 209

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQGDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ   ++ GS+    R++A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 62  PGGWSQYVVQLIGSSG---RIIACDLLPMDPIVGVDFLQGDFRDEAVLKTLLERVGDEKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|127513763|ref|YP_001094960.1| 23S rRNA methyltransferase J [Shewanella loihica PV-4]
 gi|158513475|sp|A3QGV3|RLME_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|126639058|gb|ABO24701.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella loihica PV-4]
          Length = 209

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 118/203 (58%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W+  H +D YV+ +Q  G R+R+A+K+ +I +K ++++    +VDLG++PG WSQ+
Sbjct: 9   SSTRWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQQKDKLIRPGMTVVDLGAAPGGWSQI 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
           A ++ G      +V+A DIL M+PI+GV F + DF +      + + +G    D+VLSDM
Sbjct: 69  AVKLAGETG---KVIACDILPMDPIVGVDFLQGDFREEKVLNALLERVGDAKVDVVLSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +++ F  V
Sbjct: 126 APNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVREAFTTV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S E++L+A G++
Sbjct: 186 KTRKPDSSRPRSREVYLVATGYK 208


>gi|227113766|ref|ZP_03827422.1| 23S rRNA methyltransferase J [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328603|ref|ZP_03832627.1| 23S rRNA methyltransferase J [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|261820120|ref|YP_003258226.1| 23S rRNA methyltransferase J [Pectobacterium wasabiae WPP163]
 gi|261604133|gb|ACX86619.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
           wasabiae WPP163]
          Length = 209

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G N    R++A DIL M+PI+GV F + DF D    + + + +G +   
Sbjct: 63  GGWSQYVVTQIGGNG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLAPGGSFLVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|163802296|ref|ZP_02196190.1| cell division protein FtsJ [Vibrio sp. AND4]
 gi|159173825|gb|EDP58639.1| cell division protein FtsJ [Vibrio sp. AND4]
          Length = 209

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+S   +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G +    +++A D+L M+PI GV F + DF D    + + + I  +  D+V+SD
Sbjct: 68  YAAKIIGEDG---QIIACDLLPMDPIAGVSFLQGDFRDEAVLDALLERIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKEVRDTFRV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVASGYK 208


>gi|300310714|ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073499|gb|ADJ62898.1| 23S rRNA methyltransferase (Cell division protein FtsJ) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 4/202 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           +++WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG +PGSW Q V
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYV 66

Query: 85  AARITGSN--ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLS 141
             ++ G+     +  ++ +DIL M+PI  V + + DF + +    +   + G   DLVLS
Sbjct: 67  RNKLAGAEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGRKADLVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   L + A  FA   +  GG  LVK F G   N+++   +  F+
Sbjct: 127 DMAPNLSGVAIADAARVEYLIDLAIDFAQLHMKPGGSLLVKCFNGTGYNELVHKFRAEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAK 223
            V+  KP ASR +S E+FLL K
Sbjct: 187 TVMSKKPKASRDKSSEIFLLGK 208


>gi|158291561|ref|XP_313065.3| AGAP004177-PA [Anopheles gambiae str. PEST]
 gi|157017606|gb|EAA08541.3| AGAP004177-PA [Anopheles gambiae str. PEST]
          Length = 248

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 7/208 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R + DPYV+RA++  +R RSA+KLL+I+ K+ +++    ++D G+SPGSW+Q+
Sbjct: 36  SSQEWLTRQLRDPYVERAKMMNYRCRSAFKLLEIDSKYGLVKPGHTVIDCGASPGSWTQI 95

Query: 85  AARITGSNAN-----NTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           A + + ++          VV +D+L + PI   + F   DFL  ++ + IR ++G    D
Sbjct: 96  AVKQSNADGGLPGKPKGMVVGVDLLQIYPIEHAILFGNSDFLRKETQDKIRASLGERRVD 155

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC A   FA+ M       L+K +  G    +   + 
Sbjct: 156 CVLSDMAPNASGIRALDQENITTLCYAVLRFAILMSTPNASLLMKVWDNGDVPKLEKSIL 215

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
           ++++ V  VKP ASR +S E F+LA+GF
Sbjct: 216 EYYKTVKRVKPRASRDDSAENFILARGF 243


>gi|332307115|ref|YP_004434966.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174444|gb|AEE23698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 209

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 119/210 (56%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           KN+  + S R WL  H +D YV +A+ +G R+R+ +KL +I  K  +++    +VDLG++
Sbjct: 3   KNKQSESSKR-WLKEHFDDKYVIQAKKQGLRSRAVFKLEEIQAKDSLIKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NP 136
           PG WSQ A +  G + +   V+A DIL M+P+LGV F   DF +    + +   IGG N 
Sbjct: 62  PGGWSQYAVKQVGESGH---VIACDILAMDPLLGVDFLMGDFREEAVLDTLLNKIGGKNV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+   D  ++M L E +     ++L   G + VK F G   +     +
Sbjct: 119 DVVMSDMAPNMTGNDTADQAKSMYLVELSLDMCRQVLKKNGSYTVKVFMGEGFDQFFHEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  F+ V   KP +SRA S E++L+A GF+
Sbjct: 179 KSAFKVVKTRKPDSSRARSREVYLVATGFK 208


>gi|312170896|emb|CBX79155.1| cell division protein [Erwinia amylovora ATCC BAA-2158]
          Length = 209

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKHGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      GS     RV+A DIL M+PI+GV F + DF D    + + + +G    
Sbjct: 62  PGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDTKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMTGTPAVDIPRSMYLCELALEMCRDVLAPGGSFLVKVFQGDGFEEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|254230590|ref|ZP_04923953.1| ribosomal RNA large subunit methyltransferase J [Vibrio sp. Ex25]
 gi|262393375|ref|YP_003285229.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio sp. Ex25]
 gi|269968318|ref|ZP_06182340.1| cell division protein FtsJ [Vibrio alginolyticus 40B]
 gi|151936891|gb|EDN55786.1| ribosomal RNA large subunit methyltransferase J [Vibrio sp. Ex25]
 gi|262336969|gb|ACY50764.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio sp. Ex25]
 gi|269827069|gb|EEZ81381.1| cell division protein FtsJ [Vibrio alginolyticus 40B]
          Length = 209

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   ++ +++A D+L M+PI GV F + DF D    E + + I  +  D+V+SD
Sbjct: 68  YAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLERIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKEVRDMFKA 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|261868123|ref|YP_003256045.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413455|gb|ACX82826.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSTRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ      G N    R++A D+L+M+PI+GV F + DF D +    + + +G G  
Sbjct: 62  PGGWSQYVVSQIGRNG---RIIACDLLEMDPIVGVDFLQGDFSDENVLNILLERVGEGKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 119 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQILANKGSFVVKVFQGEGFDEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G++
Sbjct: 179 RSLFSVVKVRKPEASRDRSREVYIVASGYK 208


>gi|56416831|ref|YP_153905.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222475196|ref|YP_002563612.1| cell division protein (ftsJ) [Anaplasma marginale str. Florida]
 gi|254995031|ref|ZP_05277221.1| cell division protein (ftsJ) [Anaplasma marginale str. Mississippi]
 gi|255003177|ref|ZP_05278141.1| cell division protein (ftsJ) [Anaplasma marginale str. Puerto Rico]
 gi|255004308|ref|ZP_05279109.1| cell division protein (ftsJ) [Anaplasma marginale str. Virginia]
 gi|269958781|ref|YP_003328569.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
           Israel]
 gi|81359063|sp|Q5PAN0|RLME_ANAMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809546|sp|B9KIP4|RLME_ANAMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56388063|gb|AAV86650.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222419333|gb|ACM49356.1| cell division protein (ftsJ) [Anaplasma marginale str. Florida]
 gi|269848611|gb|ACZ49255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
           Israel]
          Length = 201

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 4/186 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A+  G+R+RSAYKL+ I+ K ++LQ  R ++DLGS PG W+QVAA    +      VVA+
Sbjct: 3   AKKHGYRSRSAYKLIDIDCKFKLLQRGRYVLDLGSCPGGWAQVAAERV-AEGGKAHVVAV 61

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
           D+  ME I  V F + D     S E +R A+     D+VLSDMA  + GHR++DH   ++
Sbjct: 62  DMAPMERIPNVDFVQCDVEH--SPELLRAALQDRKFDVVLSDMAPKSCGHRQVDHANIIN 119

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LCE A   A+E L  GG F+ K  QG    +    L+ +F  V + KP +SR+ES E++L
Sbjct: 120 LCEMALDLAVEFLRSGGSFVTKILQGEYEQEFRRSLQYYFASVTYFKPKSSRSESSEIYL 179

Query: 221 LAKGFR 226
           +   F+
Sbjct: 180 VGTKFK 185


>gi|156975670|ref|YP_001446577.1| 23S rRNA methyltransferase J [Vibrio harveyi ATCC BAA-1116]
 gi|269961973|ref|ZP_06176328.1| cell division protein FtsJ [Vibrio harveyi 1DA3]
 gi|189040345|sp|A7MZH4|RLME_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|156527264|gb|ABU72350.1| hypothetical protein VIBHAR_03405 [Vibrio harveyi ATCC BAA-1116]
 gi|269833296|gb|EEZ87400.1| cell division protein FtsJ [Vibrio harveyi 1DA3]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+S   +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G      +++A D+L M+PI GV F + DF D    + + + I  +  D+V+SD
Sbjct: 68  YAAKIIGEEG---QIIACDLLPMDPIAGVSFLQGDFRDEAVLDALLERIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKEVRDMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|109897891|ref|YP_661146.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoalteromonas
           atlantica T6c]
 gi|123171407|sp|Q15VJ6|RLME_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|109700172|gb|ABG40092.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           KN+  + S R WL  H +D YV +A+ +G R+R+ +KL +I  K  +++    +VDLG++
Sbjct: 3   KNKQSESSKR-WLKEHFDDKYVIKAKKQGLRSRAVFKLEEIQAKDGLIKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NP 136
           PG WSQ A +  G N +   V+A DIL M+P+ GV F   DF +    + +   IGG N 
Sbjct: 62  PGGWSQYAVKQVGDNGH---VIACDILSMDPLPGVDFLMGDFREEAVLDALLNKIGGKNV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+   D  ++M L E +     ++L   G + VK F G   +     +
Sbjct: 119 DVVMSDMAPNMTGNDTADQAKSMYLVELSLDMCRQVLKKNGSYTVKVFMGEGFDQFFNEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  F+ V   KP +SRA S E++L+A GF+
Sbjct: 179 KNAFKVVKTRKPDSSRARSREVYLVATGFK 208


>gi|260913935|ref|ZP_05920409.1| ribosomal RNA large subunit methyltransferase J [Pasteurella
           dagmatis ATCC 43325]
 gi|260632022|gb|EEX50199.1| ribosomal RNA large subunit methyltransferase J [Pasteurella
           dagmatis ATCC 43325]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 119/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ      G   +  RV+A DIL+M+PI+GV F + DF D +    + + +G G  
Sbjct: 62  PGGWSQYVVSQIG---DKGRVIACDILEMDPIVGVDFLQGDFRDENVLATLLERVGEGKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 119 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLATKGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G++
Sbjct: 179 RSLFSVVKVRKPEASRDRSREVYIVATGYK 208


>gi|149375763|ref|ZP_01893531.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
           DG893]
 gi|149359888|gb|EDM48344.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
           DG893]
          Length = 206

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 122/203 (60%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  WL  H +D +V++++ +G+R+R++YKL++++ K ++ +  + +VDLG++PG WSQV
Sbjct: 6   TSDRWLKEHFDDVWVKKSREDGYRSRASYKLIELDNKDRLFRPGQTVVDLGAAPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A    G   +N  VVA DIL+M PI GV F + DF +    + +   +G    D+V+SDM
Sbjct: 66  AIERVG---DNGVVVASDILEMSPIAGVAFVQGDFTEQSVLDELLDLLGDRRADVVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D    M L E A   A ++L  GG F+ K FQG   + +L  ++K F  V
Sbjct: 123 APNMSGMAAVDIPNAMGLVELALDMAQQVLKPGGVFVAKVFQGEGFDALLAEMRKSFGTV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP +SRA S E++ + KGF+
Sbjct: 183 VSRKPDSSRARSREIYQVCKGFK 205


>gi|195157182|ref|XP_002019475.1| GL12202 [Drosophila persimilis]
 gi|194116066|gb|EDW38109.1| GL12202 [Drosophila persimilis]
          Length = 249

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 10/225 (4%)

Query: 12  GLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           G   K + R+ +G   SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL+  
Sbjct: 20  GKYAKQQPRNLKGKSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYKILKPG 79

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDL 122
             ++D G++PGSW+QVA   T ++    R     V +ID+L    + G   +   DF   
Sbjct: 80  DAVLDCGAAPGSWTQVAVERTNAHGKIERAPVGAVFSIDLLHFHAVPGATIYGGMDFTTP 139

Query: 123 DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            S + +R+A+ G   + VLSDMA    G R +D     +LC     FAL M     + +V
Sbjct: 140 LSQQRLREALAGRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVV 199

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +  G    +   + K ++KV  VKP ASR +S E FL+A+G++
Sbjct: 200 KVWDNGDVPKLERNMLKFYEKVKRVKPRASRGDSAEHFLVARGYK 244


>gi|293390043|ref|ZP_06634377.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950577|gb|EFE00696.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSTRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ      G N    R++A D+L+M+PI+GV F + DF D +    + + +G G  
Sbjct: 62  PGGWSQYVVSQIGRNG---RIIACDLLEMDPIVGVDFLQGDFRDENVLNILLERVGEGKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 119 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQILANKGSFVVKVFQGEGFDEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G++
Sbjct: 179 RSLFSIVKVRKPEASRDRSREVYIVASGYK 208


>gi|320540170|ref|ZP_08039825.1| 23S rRNA methyltransferase [Serratia symbiotica str. Tucson]
 gi|320029836|gb|EFW11860.1| 23S rRNA methyltransferase [Serratia symbiotica str. Tucson]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    IVDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTIVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V  +I G+     R+VA DIL ++PI+GV F + DF D    + + + +G +  
Sbjct: 63  GGWSQYVVTQIGGAG----RIVACDILPIDPIVGVDFLQGDFRDELVLKALLERVGESKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|91228945|ref|ZP_01262842.1| cell division protein FtsJ [Vibrio alginolyticus 12G01]
 gi|91187505|gb|EAS73840.1| cell division protein FtsJ [Vibrio alginolyticus 12G01]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 120/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   ++ +++A D+L M+PI GV F + DF D    E + + I  +  D+V+SD
Sbjct: 68  YAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLERIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLARNGSFVVKVFQGEGFDQYVKEVRDMFKA 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|300721530|ref|YP_003710805.1| 23 S rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297628022|emb|CBJ88571.1| 23 S rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
          Length = 209

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G   N+ RV+A D+L M+PI+GV F + DF D    + + + +G N   
Sbjct: 63  GGWSQYVVSQIG---NSGRVIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDNKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLIELALDMCRDVLAPGGSFIVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F K+   KP ASRA S E++++A G
Sbjct: 180 SLFAKIKIRKPEASRARSREVYIVATG 206


>gi|218506332|ref|ZP_03504210.1| cell division protein [Rhizobium etli Brasil 5]
          Length = 106

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 2/106 (1%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           +EK+ IL+  +RI+DLG++PGSWSQ+AA +TGS   + RV AID L
Sbjct: 61  DEKYHILRGAKRIIDLGAAPGSWSQIAANVTGSTDEDIRVAAIDFL 106


>gi|292486828|ref|YP_003529698.1| cell division protein [Erwinia amylovora CFBP1430]
 gi|292900773|ref|YP_003540142.1| ribosomal RNA large subunit methyltransferase J [Erwinia amylovora
           ATCC 49946]
 gi|291200621|emb|CBJ47753.1| ribosomal RNA large subunit methyltransferase J [Erwinia amylovora
           ATCC 49946]
 gi|291552245|emb|CBA19282.1| cell division protein [Erwinia amylovora CFBP1430]
          Length = 209

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKHGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      GS     RV+A DIL M+PI+GV F + DF D    + + + +G    
Sbjct: 62  PGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFRDELVLKALLEHVGDTKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMTGTPAVDIPRSMYLCELALEMCRDVLAPGGSFLVKVFQGDGFEEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|183600359|ref|ZP_02961852.1| hypothetical protein PROSTU_03922 [Providencia stuartii ATCC 25827]
 gi|188020150|gb|EDU58190.1| hypothetical protein PROSTU_03922 [Providencia stuartii ATCC 25827]
          Length = 209

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G   +N RV+A DIL M+PI+GV F + DF +      + + +G     
Sbjct: 63  GGWSQYVVSQIG---HNGRVIACDILPMDPIVGVDFLQGDFREEAVLAALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A      +L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDEYLRDIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP +SRA S E++++A G +
Sbjct: 180 SLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|254468491|ref|ZP_05081897.1| ribosomal RNA large subunit methyltransferase J [beta
           proteobacterium KB13]
 gi|207087301|gb|EDZ64584.1| ribosomal RNA large subunit methyltransferase J [beta
           proteobacterium KB13]
          Length = 205

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 119/199 (59%), Gaps = 4/199 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           + ++W+  H++D +V+RAQ +G+R+R+AYK +++N+K+ +++ N RIVDLGS+PGSWSQ 
Sbjct: 6   TKKNWIKEHLSDEFVKRAQKDGFRSRAAYKFIEMNDKYHLIRPNDRIVDLGSAPGSWSQA 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A+ +    +NN ++ AID+L M+ +    F + DF +L   + + + +     DLV+SDM
Sbjct: 66  ASSLI---SNNGKIFAIDLLPMDDVKNTTFIQGDFRELSILQKLEELLENTAVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +  D      L + +  FA + L   G F+VKTF G    + +  L+  F KV
Sbjct: 123 APNISGIKSRDQAMINDLNDLSLKFASDWLKPKGHFMVKTFMGSGFEEYVKKLRSLFNKV 182

Query: 204 IHVKPVASRAESVEMFLLA 222
              KP +SR  S E FL+ 
Sbjct: 183 KIEKPDSSRDRSAEFFLIG 201


>gi|317493619|ref|ZP_07952040.1| ribosomal RNA large subunit methyltransferase J [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918562|gb|EFV39900.1| ribosomal RNA large subunit methyltransferase J [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 208

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  W++ H +D YV +AQ +G R+R+ +KL +I    ++ +    +VDLG++
Sbjct: 3   KKRSA--SSNRWMHEHFSDKYVIQAQKKGLRSRAWFKLDEIQSTDKLFKPGMTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      G   N+ RV+A DIL M+PI+GV F + DF D    + +   +G +  
Sbjct: 61  PGGWSQYVVTQIG---NSGRVIACDILPMDPIVGVDFLQGDFRDELVLKALTDRVGEDKV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A   A ++L  GG FLVK FQG   ++ L  +
Sbjct: 118 QVVMSDMAPNMSGTPSVDIPRSMYLVELALEMAKDVLAPGGSFLVKVFQGEGFDEYLTQI 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 178 RSLFTKVKIRKPDASRARSREVYIVATG 205


>gi|237841293|ref|XP_002369944.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii ME49]
 gi|211967608|gb|EEB02804.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii ME49]
          Length = 342

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 2/211 (0%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           +++N++   +S +W+ R I D YV RAQ    R+R+A+KL Q+++     + N+ +VDLG
Sbjct: 110 RIRNKNSSHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDDFLFFRKNQVVVDLG 168

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-G 134
           + PG WSQVA     +     RV+A+D + M+P+    F +       + + + + +G  
Sbjct: 169 AYPGGWSQVALDRIRAGGGEGRVIAVDPVAMDPLPHHTFIQGSVGQAGTLQALLEELGES 228

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA   IG ++ DHL    LC  A+    ++L +GG F+ K F G  TN+   
Sbjct: 229 KADVVLSDMAPACIGVKQDDHLNCAELCLFASDLMEQVLKLGGTFVTKMFMGSETNNFKV 288

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F+KV   KP A R ES EM+ + + F
Sbjct: 289 YLRTRFKKVSSAKPRACRQESREMYFVCQHF 319


>gi|330816267|ref|YP_004359972.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
           BSR3]
 gi|327368660|gb|AEA60016.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
           BSR3]
          Length = 220

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+++ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDDQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR--ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A      G   ++ R       ++A+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKQRDSQREGGIDGIIIALDMLPMEPIADVHFIQGDFREDEVLRQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  F+   L   G  LVK F G
Sbjct: 118 LEDVLEGRAVDLVISDMAPNLSGVALADAARIEHVCDLALEFSQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFRTVAPRKPKASRDKSSETFILGRHLK 217


>gi|221504430|gb|EEE30103.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii VEG]
          Length = 342

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 2/211 (0%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           +++N++   +S +W+ R I D YV RAQ    R+R+A+KL Q+++     + N+ +VDLG
Sbjct: 110 RIRNKNSSHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDDFLFFRKNQVVVDLG 168

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-G 134
           + PG WSQVA     +     RV+A+D + M+P+    F +       + + + + +G  
Sbjct: 169 AYPGGWSQVALDRIRAGGGEGRVIAVDPVAMDPLPHHTFIQGSVGQAGTLQALLEELGES 228

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA   IG ++ DHL    LC  A+    ++L +GG F+ K F G  TN+   
Sbjct: 229 KADVVLSDMAPACIGVKQDDHLNCAELCLFASDLMEQVLKLGGTFVTKMFMGSETNNFKV 288

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F+KV   KP A R ES EM+ + + F
Sbjct: 289 YLRTRFKKVSSAKPRACRQESREMYFVCQHF 319


>gi|221480608|gb|EEE19062.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii GT1]
          Length = 342

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 2/211 (0%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           +++N++   +S +W+ R I D YV RAQ    R+R+A+KL Q+++     + N+ +VDLG
Sbjct: 110 RIRNKNSSHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDDFLFFRKNQVVVDLG 168

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-G 134
           + PG WSQVA     +     RV+A+D + M+P+    F +       + + + + +G  
Sbjct: 169 AYPGGWSQVALDRIRAGGGEGRVIAVDPVAMDPLPHHTFIQGSVGQAGTLQALLEELGES 228

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA   IG ++ DHL    LC  A+    ++L +GG F+ K F G  TN+   
Sbjct: 229 KADVVLSDMAPSCIGVKQDDHLNCAELCLFASDLMEQVLKLGGTFVTKMFMGSETNNFKV 288

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F+KV   KP A R ES EM+ + + F
Sbjct: 289 YLRTRFKKVSSAKPRACRQESREMYFVCQHF 319


>gi|307202661|gb|EFN81981.1| Putative ribosomal RNA methyltransferase CG11447 [Harpegnathos
           saltator]
          Length = 246

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL R + DPYV++A+ E +R RSA+KLL+I E+  I +  + +VD G++PGSW++V
Sbjct: 34  SSQQWLVRQLRDPYVEKAKQERYRCRSAFKLLEIQERFNIFKPGQVVVDCGAAPGSWTEV 93

Query: 85  AARITGSNANNT----RVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGN-PDL 138
           A     ++        +V A+D L   P+ G V     DF    + E +R+ +  +  D+
Sbjct: 94  AVNAINASGKKDGSVGKVFAVDKLPFYPVEGAVVLSGMDFTSASTQEELRKTMQDDKADV 153

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VLSDMA    G R+IDH   + L  +A  FAL+M    G F+VK + G  T  +   + +
Sbjct: 154 VLSDMAPNASGVREIDHDNIIMLAYSAMKFALQMNKPDGTFVVKIWDGRKTQQLEQDMLR 213

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            + +V  V+P A+R ES EMF LA+ F+
Sbjct: 214 FYNRVRIVRPNATRDESTEMFFLARDFK 241


>gi|319944197|ref|ZP_08018473.1| ribosomal RNA large subunit methyltransferase J [Lautropia
           mirabilis ATCC 51599]
 gi|319742492|gb|EFV94903.1| ribosomal RNA large subunit methyltransferase J [Lautropia
           mirabilis ATCC 51599]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 115/218 (52%), Gaps = 20/218 (9%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +R WL+ H+NDPYV+ AQ   +RAR+A+KL+ I+E+  +++    +VDLGS+PGSWSQV 
Sbjct: 10  NRAWLHDHLNDPYVKLAQRHHYRARAAFKLIGIDEQDHLIRPGMTVVDLGSAPGSWSQVV 69

Query: 86  -ARITGSNANNT------------------RVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
             R+   N                      R+VA+D+L MEPI  V + + DF + D  +
Sbjct: 70  RRRLAAPNLAEDVRKADDLRGEAPQVPIQGRIVALDLLPMEPIPDVNYLQGDFREQDVLD 129

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +   + GG  DLVLSDMA    G    D  R   L E +  FA   L   G  L+K F 
Sbjct: 130 RLEALLDGGKVDLVLSDMAPNLSGVGVADTARMQDLAELSVDFASRWLKPDGALLIKVFH 189

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           G   + ++ L K HF  V   KP ASR  S E +LL +
Sbjct: 190 GSGYSQLVRLFKDHFAVVQPRKPKASRDRSAETYLLGR 227


>gi|15602302|ref|NP_245374.1| 23S rRNA methyltransferase J [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81637177|sp|Q9CNJ3|RLME_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|12720691|gb|AAK02521.1| FtsJ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           PG WSQ V ++I G+     R++A DIL+M+PI+GV F + DF D      +   +G G 
Sbjct: 62  PGGWSQYVVSQIGGAG----RIIACDILEMDPIVGVDFLQGDFRDEKVLAALLARVGEGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLATKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRGRSREVYIVATGYK 208


>gi|229520927|ref|ZP_04410349.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TM 11079-80]
 gi|229342160|gb|EEO07156.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TM 11079-80]
          Length = 239

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG
Sbjct: 30  KMSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLG 89

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  +
Sbjct: 90  AAPGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPD 146

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D + 
Sbjct: 147 MVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVK 206

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 238


>gi|229505742|ref|ZP_04395252.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae BX 330286]
 gi|229509225|ref|ZP_04398710.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae B33]
 gi|229512898|ref|ZP_04402365.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TMA 21]
 gi|229519566|ref|ZP_04409009.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae RC9]
 gi|229525289|ref|ZP_04414694.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae bv. albensis VL426]
 gi|229530441|ref|ZP_04419829.1| cell division protein ftsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae 12129(1)]
 gi|229608853|ref|YP_002879501.1| 23S rRNA methyltransferase J [Vibrio cholerae MJ-1236]
 gi|229332214|gb|EEN97702.1| cell division protein ftsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae 12129(1)]
 gi|229338870|gb|EEO03887.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae bv. albensis VL426]
 gi|229344255|gb|EEO09230.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae RC9]
 gi|229350147|gb|EEO15100.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TMA 21]
 gi|229353797|gb|EEO18733.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae B33]
 gi|229357965|gb|EEO22882.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae BX 330286]
 gi|229371508|gb|ACQ61931.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae MJ-1236]
          Length = 239

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG
Sbjct: 30  KMSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLG 89

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  +
Sbjct: 90  AAPGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPD 146

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D + 
Sbjct: 147 MVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVK 206

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 238


>gi|261856557|ref|YP_003263840.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
           neapolitanus c2]
 gi|261837026|gb|ACX96793.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
           neapolitanus c2]
          Length = 209

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H  D +V RA+ EG+R+R+ YKL+++NE+ + L+  +R+VDLG++PG W+Q 
Sbjct: 6   SSQRWLAEHFRDEFVLRAKREGYRSRAVYKLMELNERDRFLKPGQRVVDLGAAPGGWTQY 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           AA++ G   +   + A+D+L M+        + DF   +    +   +G  P DLV+SDM
Sbjct: 66  AAQVVGDRGH---IFALDLLPMDHFAHTTVIQGDFSSEEVLAHLTALLGDAPVDLVISDM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A  F   ML   G F+ K FQG   + ++   +  F+ V
Sbjct: 123 APNMSGVETVDIPRAMYLAELALDFCHHMLKPEGAFVTKVFQGEGFDALMKNARSAFKSV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR  S E++L+A+G R
Sbjct: 183 VVRKPKASRPRSREVYLVARGKR 205


>gi|90409010|ref|ZP_01217140.1| hypothetical protein PCNPT3_10771 [Psychromonas sp. CNPT3]
 gi|90309895|gb|EAS38050.1| hypothetical protein PCNPT3_10771 [Psychromonas sp. CNPT3]
          Length = 222

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 4/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+  H+ND YV+ A   G R+R+ +KL +IN+K ++++S   +VDLG++PGSWSQ     
Sbjct: 26  WMQEHVNDFYVKEANRLGLRSRAVFKLDEINKKDKLIRSGMTVVDLGAAPGSWSQWCVDT 85

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            GS     +V+A DIL M+ I GV F + DF D      + + IG +  D+VLSDM+   
Sbjct: 86  VGSRG---KVIACDILAMDSIAGVDFLQGDFRDEAVLHALLKRIGPHKLDVVLSDMSPNM 142

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G+  +D  ++M L E A     ++L   G F+VK F G   +  +  +KK F  V   K
Sbjct: 143 SGNAAMDQPKSMYLVELALEMCSDVLKKDGSFIVKVFMGADFDTFMKEVKKRFNVVKTRK 202

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SRA S E++L+A GF+
Sbjct: 203 PDSSRARSREVYLVATGFK 221


>gi|301156346|emb|CBW15817.1| 23S rRNA methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 210

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           PG WSQ V ++I G      RV+A DILDM PI+GV F + DF D +    + + +G   
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILDMNPIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLAKKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRGRSREVYIVASGYK 208


>gi|254508251|ref|ZP_05120375.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus 16]
 gi|219548868|gb|EED25869.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus 16]
          Length = 209

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I  +  D+V+SD
Sbjct: 68  YAAKIIG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKEVRDMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|251792627|ref|YP_003007353.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534020|gb|ACS97266.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           aphrophilus NJ8700]
          Length = 209

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 119/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      G N    RV+A DIL+M+PI+GV F + DF D +    + + +G +  
Sbjct: 62  PGGWSQYVVSQIGRNG---RVIACDILEMDPIVGVDFLQGDFRDENVLNTLLERVGEDKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 119 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G++
Sbjct: 179 RSLFSVVKVRKPEASRDRSREVYIVASGYK 208


>gi|188532497|ref|YP_001906294.1| 23S rRNA methyltransferase J [Erwinia tasmaniensis Et1/99]
 gi|226703304|sp|B2VGT0|RLME_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|188027539|emb|CAO95386.1| Ribosomal RNA large subunit methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 209

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      GS     RV+A DIL M+PI+GV F + DF +    + + + +G    
Sbjct: 62  PGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFREELVLKALLERVGETKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMTGTPAVDIPRSMYLCELALAMCRDVLAPGGSFLVKVFQGDGFEEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|288932082|ref|YP_003436142.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
           10642]
 gi|288894330|gb|ADC65867.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
           10642]
          Length = 197

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 113/192 (58%), Gaps = 9/192 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+ EG+R+R+AYKL QIN K +I++    ++DLG+SPG WSQVA  +      
Sbjct: 5   QDYYYWKAKKEGYRSRAAYKLKQINAKFEIIKKGYHVLDLGASPGGWSQVAVELGAD--- 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              VVA+D+  M+PI GV F K D    ++ E IR+ I    D+VL D +    G   +D
Sbjct: 62  ---VVAVDLNPMKPIEGVVFIKGDITKEETKEEIRK-IRDKFDVVLCDASPKITGKWDLD 117

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ-KVIHVKPVASRA 213
           H  +M L +AA   A E L  GG+F+VK FQG    +++   KK+F+ K +H  P ASR 
Sbjct: 118 HFLSMELAKAAFDIAKEFLKPGGNFVVKLFQGAELEEVVREFKKYFRFKKLHAPP-ASRK 176

Query: 214 ESVEMFLLAKGF 225
            S E++ + KGF
Sbjct: 177 RSAEIYFIGKGF 188


>gi|237808997|ref|YP_002893437.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Tolumonas auensis DSM
           9187]
 gi|259494571|sp|C4L8Y1|RLME_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|237501258|gb|ACQ93851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Tolumonas auensis DSM
           9187]
          Length = 209

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YVQ+AQ +G R+R+ +K+ +I +K ++++    +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYVQQAQKQGLRSRAVFKIDEIQQKDKLIKQGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                 G +    RV+A DIL M+PI GV F + DF +      +   +G    D++LSD
Sbjct: 68  FCVEQVGPHG---RVIACDILPMDPIAGVDFLQGDFREEAVLSALLGRVGEQKVDIILSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G   +D  R+M L E A     ++L   G F+VK FQG    + L  ++  F  
Sbjct: 125 MAPNMSGTPAVDQPRSMYLVELALEMCKQVLAAKGSFVVKVFQGAGFEEYLKEVRSLFSV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR+ S E++++A GF+
Sbjct: 185 VKIRKPDSSRSRSREVYIVATGFK 208


>gi|257052864|ref|YP_003130697.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhabdus utahensis
           DSM 12940]
 gi|256691627|gb|ACV11964.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhabdus utahensis
           DSM 12940]
          Length = 256

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 8/192 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ +G+RARSA+KL Q++E   +L + R +VDLG++PG W QVAA   G   + 
Sbjct: 5   DKYYNRAKQQGYRARSAFKLRQLDETADLLGAERTVVDLGAAPGGWLQVAAERLG---DG 61

Query: 96  TRVVAID---ILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            RVV +D   I D+E P + V+  + D  D  + E I  A+G   +LVLSDMA    G  
Sbjct: 62  GRVVGVDRQRIDDLEEPDVPVETIRGDITDESTVEAITDAVG-EANLVLSDMAPNVTGEY 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH R++ L   A   +L++L  GGD +VK F G   +D+   +++ F+ V  V+P AS
Sbjct: 121 DLDHARSVHLARQAFEVSLDVLGAGGDLVVKVFDGRDLDDLKTDIEEEFEYVREVRPDAS 180

Query: 212 RAESVEMFLLAK 223
           R  S E++L+AK
Sbjct: 181 RDSSSELYLVAK 192


>gi|254292202|ref|ZP_04962970.1| cell division protein FtsJ [Vibrio cholerae AM-19226]
 gi|150421883|gb|EDN13862.1| cell division protein FtsJ [Vibrio cholerae AM-19226]
          Length = 209

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA++ G      RV+A D+L ME I GV F + DF +      +   I  +  D+V+SD
Sbjct: 68  FAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRNLFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR+ S E+F++A G++
Sbjct: 185 VKIRKPDSSRSRSREVFIVATGYK 208


>gi|261250304|ref|ZP_05942880.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio orientalis CIP 102891]
 gi|260939420|gb|EEX95406.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio orientalis CIP 102891]
          Length = 209

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G      +++A D+L M+PI GV F + DF D    E + + I  +  D+V+SD
Sbjct: 68  YAAKIIGEEG---QIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLKRIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKDIRDMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|15640656|ref|NP_230285.1| 23S rRNA methyltransferase J [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121730106|ref|ZP_01682507.1| cell division protein FtsJ [Vibrio cholerae V52]
 gi|147673945|ref|YP_001216130.1| 23S rRNA methyltransferase J [Vibrio cholerae O395]
 gi|153820567|ref|ZP_01973234.1| cell division protein FtsJ [Vibrio cholerae NCTC 8457]
 gi|153830952|ref|ZP_01983619.1| cell division protein FtsJ [Vibrio cholerae 623-39]
 gi|227080817|ref|YP_002809368.1| cell division protein FtsJ [Vibrio cholerae M66-2]
 gi|254850870|ref|ZP_05240220.1| cell division protein FtsJ [Vibrio cholerae MO10]
 gi|255744147|ref|ZP_05418100.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholera CIRS 101]
 gi|262155721|ref|ZP_06028845.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae INDRE 91/1]
 gi|262189675|ref|ZP_06048049.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae CT 5369-93]
 gi|297580762|ref|ZP_06942688.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           RC385]
 gi|298500752|ref|ZP_07010555.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MAK 757]
 gi|81545365|sp|Q9KU87|RLME_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040344|sp|A5F937|RLME_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809561|sp|C3LSP1|RLME_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|9655071|gb|AAF93802.1| cell division protein FtsJ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121628141|gb|EAX60673.1| cell division protein FtsJ [Vibrio cholerae V52]
 gi|126508889|gb|EAZ71483.1| cell division protein FtsJ [Vibrio cholerae NCTC 8457]
 gi|146315828|gb|ABQ20367.1| cell division protein FtsJ [Vibrio cholerae O395]
 gi|148873565|gb|EDL71700.1| cell division protein FtsJ [Vibrio cholerae 623-39]
 gi|227008705|gb|ACP04917.1| cell division protein FtsJ [Vibrio cholerae M66-2]
 gi|227012461|gb|ACP08671.1| cell division protein FtsJ [Vibrio cholerae O395]
 gi|254846575|gb|EET24989.1| cell division protein FtsJ [Vibrio cholerae MO10]
 gi|255738087|gb|EET93479.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholera CIRS 101]
 gi|262030432|gb|EEY49072.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae INDRE 91/1]
 gi|262034441|gb|EEY52807.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae CT 5369-93]
 gi|297535178|gb|EFH74013.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           RC385]
 gi|297540533|gb|EFH76591.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MAK 757]
          Length = 209

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA++ G      RV+A D+L ME I GV F + DF +      +   I  +  D+V+SD
Sbjct: 68  FAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR+ S E+F++A G++
Sbjct: 185 VKIRKPDSSRSRSREVFIVATGYK 208


>gi|52425018|ref|YP_088155.1| 23S rRNA methyltransferase J [Mannheimia succiniciproducens
           MBEL55E]
 gi|81387204|sp|Q65TZ0|RLME_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|52307070|gb|AAU37570.1| FtsJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 208

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 3   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFKPGMTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      G   +  R++A DILDM+PI+GV F + DF D +    +   +G +  
Sbjct: 61  PGGWSQYVVTQIG---DKGRIIACDILDMDPIVGVDFLQGDFRDENVLAALLDRVGEDQV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 118 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLAKKGSFVVKVFQGEGFDEYLREI 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G+R
Sbjct: 178 RSLFTTVKVRKPEASRDRSREVYIVATGYR 207


>gi|321464186|gb|EFX75196.1| hypothetical protein DAPPUDRAFT_306870 [Daphnia pulex]
          Length = 242

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 132/228 (57%), Gaps = 9/228 (3%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S+  + +  ++K RS   SS++WL R +ND YV +A++E +RARSA+KL++I++KH+ L+
Sbjct: 15  STCFKKVPDRLKGRS--KSSQEWLTRQMNDEYVLKAKMENYRARSAFKLIEIDDKHKFLK 72

Query: 67  SNRRIVDLGSSPGSWSQVAA-RITGSNANNTRV----VAIDILDMEPILG-VKFFKFDFL 120
               +V+ G++PG+W+QV   RI  +   ++++    VA+D+  M PI G V     DF 
Sbjct: 73  PGDVVVECGAAPGAWTQVCVKRINATGKVSSQLKGKHVAVDLQPMYPIEGAVILAPLDFT 132

Query: 121 DLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              S   I + +GG   + VLSDMA    G R +D  R + L  +   +A ++   G   
Sbjct: 133 KSLSQTRITEILGGQLANAVLSDMAPAASGIRDLDQDRILELAYSVLRYAQQISMDGATL 192

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L+K + GG    +   +  H+ +V  VKP +SR +S EMF+LA  F+K
Sbjct: 193 LIKLWAGGRIKQLENEIALHYSQVKVVKPPSSRQDSAEMFILASNFKK 240


>gi|330506929|ref|YP_004383357.1| ribosomal RNA large subunit methyltransferase J [Methanosaeta
           concilii GP-6]
 gi|328927737|gb|AEB67539.1| ribosomal RNA large subunit methyltransferase J [Methanosaeta
           concilii GP-6]
          Length = 256

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 114/194 (58%), Gaps = 5/194 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y ++A+ EG+RARSAYKLLQINEK  +++    +VDLG++PG W QVA +++
Sbjct: 1   MARDQKDHYYRKAKEEGYRARSAYKLLQINEKFHVIKKGDSVVDLGAAPGGWLQVAQKLS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           G      ++V +D+  + PI GV  F+ D   L + + ++ A+GG+ D+V+ D A    G
Sbjct: 61  GG-----KIVGVDLEGITPIPGVVTFRADITALSTVDQVKDALGGDADVVICDAAPNLSG 115

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               DH  ++ L  +A   A ++L   G+F+VK FQG    D L  +++ F  V    P 
Sbjct: 116 AWDRDHAISIDLARSALEMAKKLLRPRGNFVVKVFQGDMFIDFLNDVRREFAVVHAHSPA 175

Query: 210 ASRAESVEMFLLAK 223
           ASR ES E +++ K
Sbjct: 176 ASRKESAETYVVGK 189


>gi|323497766|ref|ZP_08102780.1| 23S rRNA methyltransferase J [Vibrio sinaloensis DSM 21326]
 gi|323317113|gb|EGA70110.1| 23S rRNA methyltransferase J [Vibrio sinaloensis DSM 21326]
          Length = 209

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G +    +++A D+L M+PI GV F + DF +    E + + I  +  D+V+SD
Sbjct: 68  YAAKIIGEDG---QIIACDLLPMDPIAGVSFLQGDFREDAVLEALLERIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKEIRDTFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|322831208|ref|YP_004211235.1| ribosomal RNA large subunit methyltransferase J [Rahnella sp.
           Y9602]
 gi|321166409|gb|ADW72108.1| ribosomal RNA large subunit methyltransferase J [Rahnella sp.
           Y9602]
          Length = 209

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 4/209 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG WSQ  A   G   N  R++A+D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 61  APGGWSQYVATQIG---NKGRIIALDLLPMDPIVGVDFLQGDFRDELVLKALLERVGESK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP ASRA S E++++A G
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|294634507|ref|ZP_06713042.1| ribosomal RNA large subunit methyltransferase J [Edwardsiella tarda
           ATCC 23685]
 gi|291092021|gb|EFE24582.1| ribosomal RNA large subunit methyltransferase J [Edwardsiella tarda
           ATCC 23685]
          Length = 208

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I    +I +    +VDLG++
Sbjct: 3   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGTDKIFRPGMTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ      G   +  RV+A D+L M+PI+GV F + DF D      + + +G    
Sbjct: 61  PGGWSQYVVTQIG---DKGRVIACDLLPMDPIVGVDFLQGDFRDELVLAALMERVGDAKV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  +
Sbjct: 118 QVVMSDMAPNMSGTPSVDIPRAMYLVELALEMAKDVLAPGGSFVVKVFQGEGFDEYLGQI 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 178 RSLFTKVKIRKPEASRARSREVYIVATG 205


>gi|328474227|gb|EGF45032.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus 10329]
          Length = 209

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I  +  D+V+SD
Sbjct: 68  YAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKEVRDMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|238761761|ref|ZP_04622735.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           kristensenii ATCC 33638]
 gi|238699875|gb|EEP92618.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           kristensenii ATCC 33638]
          Length = 213

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 6/214 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+   GSS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMSNKKRSGSSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVV 60

Query: 73  DLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           DLG++PG WSQ V  +I G      RV+A D+L M+PI+GV F + DF D    + + + 
Sbjct: 61  DLGAAPGGWSQYVVTQIGGKG----RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLER 116

Query: 132 IGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   +
Sbjct: 117 VGDKKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFD 176

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + L  ++  F KV   KP ASRA S E++++A G
Sbjct: 177 EYLREIRSLFTKVKIRKPDASRARSREVYIVATG 210


>gi|315634356|ref|ZP_07889643.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           segnis ATCC 33393]
 gi|315476946|gb|EFU67691.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           segnis ATCC 33393]
          Length = 209

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSTRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      G N    RV+A DIL+M+PI+GV F + DF D +    + + +G    
Sbjct: 62  PGGWSQYVVSQIGRNG---RVIACDILEMDPIVGVDFLQGDFRDENVLSTLLERVGEEKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 119 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G++
Sbjct: 179 RSLFSVVKVRKPEASRDRSREVYIVASGYK 208


>gi|323492035|ref|ZP_08097200.1| 23S rRNA methyltransferase J [Vibrio brasiliensis LMG 20546]
 gi|323313764|gb|EGA66863.1| 23S rRNA methyltransferase J [Vibrio brasiliensis LMG 20546]
          Length = 209

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G      +++A D+L M+PI GV F + DF +    E +   I  +  D+V+SD
Sbjct: 68  YAAKIVGEEG---QIIACDLLPMDPIAGVSFLQGDFREEAVLEALLDRIQPSMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKEVRDTFKA 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFVVATGYK 208


>gi|238918417|ref|YP_002931931.1| 23S rRNA methyltransferase J [Edwardsiella ictaluri 93-146]
 gi|259494565|sp|C5BFB0|RLME_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|238867985|gb|ACR67696.1| ribosomal RNA large subunit methyltransferase J, putative
           [Edwardsiella ictaluri 93-146]
          Length = 208

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I    +I +    +VDLG++
Sbjct: 3   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGTDKIFRPGMTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ      G   +  RV+A D+L M+PI+GV F + DF D      + + +G    
Sbjct: 61  PGGWSQYVVTQIG---DKGRVIACDLLPMDPIVGVDFLQGDFRDELVLAALMERVGDAKV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  +
Sbjct: 118 QVVMSDMAPNMSGTPSVDIPRAMYLVELAFEMAKDVLAPGGSFVVKVFQGEGFDEYLGQI 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 178 RSLFTKVKIRKPEASRARSREVYIVATG 205


>gi|85712945|ref|ZP_01043985.1| 23S rRNA methylase [Idiomarina baltica OS145]
 gi|85693251|gb|EAQ31209.1| 23S rRNA methylase [Idiomarina baltica OS145]
          Length = 208

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 122/210 (58%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS+ WL  H +DP+VQ+AQ  G R+R+ +K+ +I ++ ++++  + +VDLG++
Sbjct: 3   KKRSV--SSQRWLKEHFDDPFVQKAQKRGLRSRAVFKIEEIQQRDKLIKKGQTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NP 136
           PG WSQ  A     +    +V+A DIL M+PI GV F + DF +    + +   IGG N 
Sbjct: 61  PGGWSQYVADYFNGDG---QVIACDILSMDPIAGVDFLQGDFREQAVLDALLSRIGGKNV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G+  +D  R M L E A     ++L  GG F VK F G    + L  +
Sbjct: 118 DVVLSDMAPNMSGNDNVDQPRAMYLVELALDMCHQVLKPGGSFAVKVFHGQGFEEFLKDV 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SR+ S E++L+A  ++
Sbjct: 178 RAAFKTVKTRKPSSSRSRSREVYLVATDYK 207


>gi|290473440|ref|YP_003466307.1| 23 S rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172740|emb|CBJ79511.1| 23 S rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 209

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL  I +  +I +    +VDLG+SP
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDGIQQSDKIFKPGMTVVDLGASP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G   +  RV+A D+L M+PI+GV F + DF D    + + + +G N   
Sbjct: 63  GGWSQYVVNQIG---DRGRVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDNKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLIELALGMCRDVLAPGGSFIVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPEASRARSREVYIVATG 206


>gi|259907035|ref|YP_002647391.1| 23S rRNA methyltransferase J [Erwinia pyrifoliae Ep1/96]
 gi|224962657|emb|CAX54112.1| Ribosomal RNA large subunit methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476831|emb|CAY72669.1| cell division protein [Erwinia pyrifoliae DSM 12163]
 gi|310766247|gb|ADP11197.1| 23S rRNA methyltransferase J [Erwinia sp. Ejp617]
          Length = 209

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKHGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      GS     RV+A DIL M+PI+GV F + DF +    + + + +G    
Sbjct: 62  PGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFREELVLKALLERVGDTQV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMTGTPAVDIPRSMYLCELALEMCRDVLAPGGSFLVKVFQGDGFEEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|11499633|ref|NP_070875.1| cell division protein (ftsJ) [Archaeoglobus fulgidus DSM 4304]
 gi|9911012|sp|O28228|RLME_ARCFU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2648490|gb|AAB89203.1| cell division protein (ftsJ) [Archaeoglobus fulgidus DSM 4304]
          Length = 191

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 7/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+ EG+R+R+AYKLLQ+N   ++++    ++DLG++PG WSQVAA +      
Sbjct: 5   QDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAALL------ 58

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             RVVA+DI  M+P+  V F + D    ++ E IR+ I  + D+V+SD +    G   ID
Sbjct: 59  GARVVAVDINPMKPLENVTFIRGDITLPETLEKIRE-ISPDYDVVMSDASPKISGKWTID 117

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           HLR++ L  A+   A E+L  GG+F+VK FQG         LK HF+      P ASR  
Sbjct: 118 HLRSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNELKPHFRFKKFHSPQASRKR 177

Query: 215 SVEMFLLAKGFRK 227
           S E++ + K FRK
Sbjct: 178 SAEVYFIGKRFRK 190


>gi|254298037|ref|ZP_04965490.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 406e]
 gi|157807431|gb|EDO84601.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 406e]
          Length = 210

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 116/208 (55%), Gaps = 10/208 (4%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-- 87
           ++ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A    
Sbjct: 1   MHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL 60

Query: 88  ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
             G   +  R       ++A+D+L MEP+  V F + DF +      + + + G   DLV
Sbjct: 61  AQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQLEEVLAGRAVDLV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K  
Sbjct: 121 ISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQ 180

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F+ V   KP ASR +S E F+L +  ++
Sbjct: 181 FKTVAPRKPKASRDKSSETFILGRHLKQ 208


>gi|195054507|ref|XP_001994166.1| GH16178 [Drosophila grimshawi]
 gi|193896036|gb|EDV94902.1| GH16178 [Drosophila grimshawi]
          Length = 249

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+DWL R + DPYV++A++  +R RSA+KLL++++K++IL+    ++D G++PGSW+QV
Sbjct: 39  SSQDWLTRQLADPYVEKARMLNYRCRSAFKLLEMDDKYKILKPGDLVLDCGAAPGSWTQV 98

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           A   T +N    R     V +ID+L    + G   F   DF    + + +R+++     +
Sbjct: 99  AVERTNANGKIERAPRGAVYSIDLLHFHAVPGATIFGGMDFTAPLAQQRLRESLADRKVN 158

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +   + 
Sbjct: 159 CVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPHANLVVKIWDNGDVPKLERDIL 218

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +++KV  VKP ASR +S E FLLA+GF+
Sbjct: 219 SYYEKVKRVKPRASRGDSAEHFLLARGFK 247


>gi|260771180|ref|ZP_05880107.1| ribosomal RNA large subunit methyltransferase J [Vibrio furnissii
           CIP 102972]
 gi|260613777|gb|EEX38969.1| ribosomal RNA large subunit methyltransferase J [Vibrio furnissii
           CIP 102972]
          Length = 209

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++LQ +  +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLQPSMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA I G +    +V+A DIL M+ I GV F + DF +    + + + I  N  D+V+SD
Sbjct: 68  YAAGIVGESG---QVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPNMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKDVRDMFKA 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++++A G++
Sbjct: 185 VKIRKPDSSRARSREVYIVATGYK 208


>gi|261345168|ref|ZP_05972812.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rustigianii DSM 4541]
 gi|282566860|gb|EFB72395.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rustigianii DSM 4541]
          Length = 209

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 119/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G   ++ RV+A D+L M+PI+GV F + DF D      + + +G     
Sbjct: 63  GGWSQYVVSQIG---HHGRVIACDLLPMDPIVGVDFLQGDFRDEAVLAALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G  ++D  R+M L E A      +L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPEVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDEYLRDIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP +SRA S E++++A G +
Sbjct: 180 SLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|311277847|ref|YP_003940078.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cloacae SCF1]
 gi|308747042|gb|ADO46794.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cloacae SCF1]
          Length = 209

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G N    R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYAVTQIGGNG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG FLVK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALQMCRDVLAPGGSFLVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F  V   KP +SRA S E++++A G
Sbjct: 179 RSLFTTVKVRKPDSSRARSREVYIVATG 206


>gi|262401666|ref|ZP_06078232.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC586]
 gi|262352083|gb|EEZ01213.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC586]
          Length = 209

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA++ G   ++ RV+A D+L ME I GV F + DF +      + + I     D+V+SD
Sbjct: 68  FAAKVVG---DSGRVIACDLLPMESIAGVSFLQGDFREEAVLNALLERIQPEMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKA 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR+ S E+F++A G++
Sbjct: 185 VKIRKPDSSRSRSREVFIVATGYK 208


>gi|28899238|ref|NP_798843.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879068|ref|ZP_05891423.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AN-5034]
 gi|260896885|ref|ZP_05905381.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus Peru-466]
 gi|81727000|sp|Q87LZ4|RLME_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|28807462|dbj|BAC60727.1| cell division protein FtsJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086279|gb|EFO35974.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus Peru-466]
 gi|308089606|gb|EFO39301.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AN-5034]
          Length = 209

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 8/206 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP---DLVL 140
            AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I   P   D+V+
Sbjct: 68  YAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRI--QPLMVDVVM 122

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F
Sbjct: 123 SDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKEVRDMF 182

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           + V   KP +SRA S E+F++A G++
Sbjct: 183 KVVKIRKPDSSRARSREVFVVATGYK 208


>gi|119944572|ref|YP_942252.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychromonas ingrahamii
           37]
 gi|143461204|sp|A1ST38|RLME_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119863176|gb|ABM02653.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychromonas ingrahamii
           37]
          Length = 217

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 120/209 (57%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +S   SS+ W+  H+ND YV+ A  +G R+R+ +KL +IN+K ++++S   +VDLG++P
Sbjct: 11  KKSASASSKRWMYEHVNDFYVKEATKKGLRSRAVFKLEEINKKDKLIRSGMTVVDLGAAP 70

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           GSWSQ A    G      +V+A DIL M+ I GV F + DF +      +   I G+  D
Sbjct: 71  GSWSQWAVDTVGLKG---KVIACDILPMDSIAGVDFLQGDFREDAVVNALLARIAGHKVD 127

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDM+    G   ID  ++M L E A     E+L   G F+VK F G   +  +   +
Sbjct: 128 VVLSDMSPNMTGTVGIDQPKSMYLVELALEMCKEVLVKEGSFVVKVFMGSEFDLFMSEAR 187

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+ V   KP +SR+ S E++++A G++
Sbjct: 188 KCFKSVKTRKPDSSRSRSREVYVVATGYK 216


>gi|269137756|ref|YP_003294456.1| 23S rRNA methyltransferase J [Edwardsiella tarda EIB202]
 gi|267983416|gb|ACY83245.1| 23S rRNA methyltransferase J [Edwardsiella tarda EIB202]
 gi|304557813|gb|ADM40477.1| Cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [Edwardsiella tarda FL6-60]
          Length = 208

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I    +I +    +VDLG++
Sbjct: 3   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGSDKIFRPGMTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ      G   +  R++A D+L M+PI+GV F + DF D      + + +G    
Sbjct: 61  PGGWSQYVVTQIG---DKGRIIACDLLPMDPIVGVDFLQGDFRDELVLGALMERVGDAKV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A   A ++L  GG F+VK FQG   ++ L  +
Sbjct: 118 QVVMSDMAPNMSGTPSVDIPRSMYLVELALEMAKDVLAPGGSFVVKVFQGEGFDEYLGQI 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 178 RSLFTKVKIRKPDASRARSREVYIVATG 205


>gi|145546330|ref|XP_001458848.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426670|emb|CAK91451.1| unnamed protein product [Paramecium tetraurelia]
          Length = 244

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 10/205 (4%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S Q  ++ W   HIND YV+ ++    R+R+A+KL+QINEK+ I + N+ ++DLG++PGS
Sbjct: 13  SSQKKTKRWYMEHINDFYVKESKRLQLRSRAAFKLMQINEKYAIYKPNQYVLDLGAAPGS 72

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
           WSQV +          +V+AID+L++ PI  VKF + D +D      IRQ      D+VL
Sbjct: 73  WSQVVSE-------KGKVMAIDLLEVSPIQNVKFIQGDIMDKQIMNQIRQ---HKFDVVL 122

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G  + DH    +L + A   +   L   G+ ++KTF G          +  F
Sbjct: 123 SDMAPNVSGEHEADHQGITALNQTALLLSTFTLKTNGNLVMKTFVGSEEKLNYDFFRLFF 182

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           ++    KP++S+ ES E+F + KGF
Sbjct: 183 KEFYREKPLSSKQESSELFYVGKGF 207


>gi|253991509|ref|YP_003042865.1| 23S rRNA methyltransferase J [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638387|emb|CAR67009.1| ribosomal rna large subunit methyltransferase j (ec 2.1.1.-) (rrn
           (uridine-2'-o-)-methyltransferase) (23s rrna m2u255
           methyltransferase) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782959|emb|CAQ86124.1| ribosomal RNA large subunit methyltransferase [Photorhabdus
           asymbiotica]
          Length = 209

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A      N    RV+A D+L M+PI+GV F + DF D    + + + +G N   
Sbjct: 63  GGWSQYAVSQINENG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDNKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPGGSFIVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F  V   KP ASRA S E++++A G
Sbjct: 180 SLFTNVKIRKPDASRARSREVYIVATG 206


>gi|315179213|gb|ADT86127.1| 23S rRNA methyltransferase J [Vibrio furnissii NCTC 11218]
          Length = 209

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++LQ    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLQPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA I G +    +V+A DIL M+ I GV F + DF +    + + + I  N  D+V+SD
Sbjct: 68  YAAGIVGESG---QVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPNMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKDVRDMFKA 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E++++A G++
Sbjct: 185 VKIRKPDSSRARSREVYIVATGYK 208


>gi|162419181|ref|YP_001608279.1| 23S rRNA methyltransferase J [Yersinia pestis Angola]
 gi|165928158|ref|ZP_02223990.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937481|ref|ZP_02226044.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011366|ref|ZP_02232264.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214008|ref|ZP_02240043.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401245|ref|ZP_02306745.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420655|ref|ZP_02312408.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423579|ref|ZP_02315332.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|270489129|ref|ZP_06206203.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           KIM D27]
 gi|294505365|ref|YP_003569427.1| cell division protein [Yersinia pestis Z176003]
 gi|21957398|gb|AAM84269.1|AE013670_6 cell division protein [Yersinia pestis KIM 10]
 gi|45435291|gb|AAS60850.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162351996|gb|ABX85944.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Angola]
 gi|165914586|gb|EDR33200.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919845|gb|EDR37146.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989750|gb|EDR42051.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204803|gb|EDR49283.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961461|gb|EDR57482.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049270|gb|EDR60678.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057749|gb|EDR67495.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|262363431|gb|ACY60152.1| cell division protein [Yersinia pestis D106004]
 gi|262367195|gb|ACY63752.1| cell division protein [Yersinia pestis D182038]
 gi|270337633|gb|EFA48410.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           KIM D27]
 gi|294355824|gb|ADE66165.1| cell division protein [Yersinia pestis Z176003]
          Length = 213

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKQGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ A    GS     RV+A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYAVTQIGSKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++
Sbjct: 118 GDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            L  ++  F KV   KP ASRA S E++++A G
Sbjct: 178 YLREIRSLFTKVKIRKPDASRARSREVYIVATG 210


>gi|27365050|ref|NP_760578.1| 23S rRNA methyltransferase J [Vibrio vulnificus CMCP6]
 gi|37680900|ref|NP_935509.1| 23S rRNA methyltransferase J [Vibrio vulnificus YJ016]
 gi|320155433|ref|YP_004187812.1| cell division protein FtsJ/Ribosomal RNA large subunit
           methyltransferase E [Vibrio vulnificus MO6-24/O]
 gi|81448574|sp|Q8DBW7|RLME_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81756680|sp|Q7MI01|RLME_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|27361196|gb|AAO10105.1| Ribosomal RNA large subunit methyltransferase J [Vibrio vulnificus
           CMCP6]
 gi|37199650|dbj|BAC95480.1| 23S rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930745|gb|ADV85609.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase E [Vibrio vulnificus MO6-24/O]
          Length = 209

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 122/210 (58%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K +    SSR WL  H +D Y   A+ +G+R+R+ +KL +I +K ++L+    +VDLG++
Sbjct: 3   KQKHSASSSR-WLKEHFDDKYANEARRKGYRSRAIFKLEEIQQKDKLLKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ A  + G   ++ RV+A DIL M+ I GV F + DF +    E + + I  +  
Sbjct: 62  PGGWSQYAIGVVG---DSGRVIACDILPMDSIAGVSFLQGDFREDAVLEALLERIQPDMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   ++ +  +
Sbjct: 119 DVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDEYVKEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SRA S E+F++A G++
Sbjct: 179 RNMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|238797559|ref|ZP_04641056.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           mollaretii ATCC 43969]
 gi|238718556|gb|EEQ10375.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 118/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+   GSS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSGSSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A    G+     RV+A D+L M+PI+GV F + DF D    + + + +G     
Sbjct: 63  GGWSQYAVTQIGAKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++
Sbjct: 120 VVMCDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|308050591|ref|YP_003914157.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632781|gb|ADN77083.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 209

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL  H +D YV++AQ +G R+R+ +KL +I  K ++L+   ++VDLG++PG WSQ 
Sbjct: 9   SSKRWLTEHFDDQYVKKAQKQGLRSRAVFKLEEIQGKDRLLKPGMKVVDLGAAPGGWSQY 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A    G +     V+A DIL M+PI GV F + DF +      +   IG    D+V+SDM
Sbjct: 69  ATEQVGQDG---MVIACDILPMDPIAGVDFLQGDFREEAVLNALLTHIGDEKVDVVMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D  R M L E A     ++L   G F+VK FQG   +  L  ++  F  V
Sbjct: 126 APNFSGAGAVDQPRAMYLVELAFDMCHQVLKKNGAFVVKVFQGEGFDQYLQEVRSVFGNV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++++A G++
Sbjct: 186 KIRKPDSSRARSREVYIVASGYK 208


>gi|261212253|ref|ZP_05926539.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC341]
 gi|260838861|gb|EEX65512.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC341]
          Length = 209

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA++ G   ++ RV+A D+L ME I GV F + DF +      + + I     D+V+SD
Sbjct: 68  FAAKVVG---DSGRVIACDLLPMESIAGVSFLQGDFREEAVLNALLERIQPEMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAQNGSFVVKVFQGEGFDDYVKAVRDLFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR+ S E+F++A G++
Sbjct: 185 VKIRKPDSSRSRSREVFIVATGYK 208


>gi|190348381|gb|EDK40824.2| hypothetical protein PGUG_04922 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 256

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G+S    L  +++++S   S R WL R  +DP+ + A+ + +R+R+AYKL++++ K  + 
Sbjct: 34  GTSKHCQLNVQIRSKSSVSSER-WLRRQKDDPHTKEAKKQHYRSRAAYKLIELDHKFSLF 92

Query: 66  QSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           + N  RIVDLG +PG+W+QVA +         +++ +DI+   P  G +F   D     +
Sbjct: 93  KRNTLRIVDLGFAPGAWTQVAMQRMAQLGQKPKILGVDIIPSTPPEGAQFLHGDIFSRKT 152

Query: 125 WEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            + IR     N  DLV+SDM   T G +  DHL +M LCE A   A   L   G  ++K 
Sbjct: 153 HQEIRDNFPNNEVDLVMSDMMANTSGIKDNDHLASMELCEGALMLAASTLKTNGALVMKF 212

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + G     +    +K F+KV  +KP A R ES EM+ +  G
Sbjct: 213 YTGREERQLEEKCRKMFKKVHRMKPSACRPESREMYFVCLG 253


>gi|77166028|ref|YP_344553.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus oceani
           ATCC 19707]
 gi|254436320|ref|ZP_05049826.1| ribosomal RNA large subunit methyltransferase J [Nitrosococcus
           oceani AFC27]
 gi|123593534|sp|Q3J823|RLME_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|76884342|gb|ABA59023.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207088010|gb|EDZ65283.1| ribosomal RNA large subunit methyltransferase J [Nitrosococcus
           oceani AFC27]
          Length = 212

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 4/203 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  WL  H  D YV +A+ +G+R+R+ +KL +I+ + ++L   R ++DLG++PG WSQ A
Sbjct: 8   SARWLREHFRDSYVIQAKAQGYRSRAVFKLQEIDTRERLLGPGRVVIDLGAAPGGWSQWA 67

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
           A   G      RV+A+DIL M    GV+F + DF + +    ++  + G   DLV+SDMA
Sbjct: 68  AERVGERG---RVIAMDILPMLSCPGVQFIQGDFREDNVLAELQNTLAGCVVDLVMSDMA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D  R + L E A  FA E L   G FL+KTFQG   + +  ++++ F +V 
Sbjct: 125 PNMSGMAAVDQPRAIYLGELALAFAQESLGPEGSFLLKTFQGEGFDALYEVIRQDFSRVR 184

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR  S E++++A+  RK
Sbjct: 185 IHKPPASRGRSREVYIVARRSRK 207


>gi|260596194|ref|YP_003208765.1| 23S rRNA methyltransferase J [Cronobacter turicensis z3032]
 gi|189040699|sp|A7MIM8|RLME_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|260215371|emb|CBA27387.1| Ribosomal RNA large subunit methyltransferase J [Cronobacter
           turicensis z3032]
          Length = 209

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G+     R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGAG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|82778493|ref|YP_404842.1| 23S rRNA methyltransferase J [Shigella dysenteriae Sd197]
 gi|309785507|ref|ZP_07680138.1| ribosomal RNA large subunit methyltransferase J [Shigella
           dysenteriae 1617]
 gi|123561519|sp|Q32BF4|RLME_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81242641|gb|ABB63351.1| cell division protein [Shigella dysenteriae Sd197]
 gi|308926627|gb|EFP72103.1| ribosomal RNA large subunit methyltransferase J [Shigella
           dysenteriae 1617]
          Length = 209

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L +GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLALGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|76801271|ref|YP_326279.1| ribosomal RNA methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|83305661|sp|Q3IT24|RLME_NATPD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|76557136|emb|CAI48710.1| probable ribosomal RNA methyltransferase [Natronomonas pharaonis
           DSM 2160]
          Length = 252

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 4/189 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ +G+R+R+AYKL Q++E   ++     +VDLG++PG W QVA  + G     
Sbjct: 5   DDYYNRAKQQGYRSRAAYKLKQLDEAADLINEGDTVVDLGAAPGGWLQVANELAGEAGT- 63

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             VV +D+  ++PI GV+  + D  +  + E +R A+ G  D+V+SDMA    G   +DH
Sbjct: 64  --VVGVDLQRIDPIEGVETVRGDMTEDATREKVR-ALVGEADVVISDMAPNMTGEYSLDH 120

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R++ L   A   AL++L   GD + K F+G  T+D+   + + F+ V  + P ASR  S
Sbjct: 121 ARSVHLARMAFETALDLLAPNGDLVAKVFEGPDTDDLRADIDREFEYVRTIHPDASRDSS 180

Query: 216 VEMFLLAKG 224
            E+F++AKG
Sbjct: 181 SELFMVAKG 189


>gi|88812982|ref|ZP_01128225.1| 23S rRNA Um2552 2'-O-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88789760|gb|EAR20884.1| 23S rRNA Um2552 2'-O-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 190

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 4/183 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A  +G+R+R+ YKLL+I+++ ++L     ++DLG++PGSWSQ      G+     RV+A+
Sbjct: 4   AHKQGYRSRAVYKLLEIDQRDRLLHRGMTVIDLGAAPGSWSQYCVERLGATG---RVIAL 60

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
           DIL M+P+ GV+  + DF D  +   +   + G P  LVLSDMA    G   ID  R M 
Sbjct: 61  DILPMQPLPGVEVLQADFRDAKTLTELINRVEGRPVHLVLSDMAPNISGVTAIDQPRAMR 120

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           L E A   A ++L   G FL+K FQG   +D L  L++ F+KV+  KP ASR  S E++L
Sbjct: 121 LAEEALELACQVLVGNGSFLIKGFQGEGFDDYLQRLRECFRKVVIRKPKASRERSREVYL 180

Query: 221 LAK 223
           LA+
Sbjct: 181 LAR 183


>gi|269103413|ref|ZP_06156110.1| 23S rRNA methylase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163311|gb|EEZ41807.1| 23S rRNA methylase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 209

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           GSS  WL  H +D YV  AQ +G+R+R+ +K+ +I +K ++L+    +VDLG++PG WSQ
Sbjct: 8   GSSGRWLKEHFDDKYVLEAQKKGYRSRALFKIEEIQQKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA + G   ++ +V+A DIL M+P+ GV F + DF +    + + + I  +  D+VLSD
Sbjct: 68  YAAGVVG---DDGQVIACDILPMDPLPGVSFLQGDFREEAVLDALLERIQPDMVDVVLSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+   D  R M L E A     ++L   G F VK FQG   +  L  ++  F+ 
Sbjct: 125 MAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFAVKVFQGEGFDQYLADIRSMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S E++++A G++
Sbjct: 185 VKIRKPDSSRDRSREVYIVATGYK 208


>gi|325578452|ref|ZP_08148587.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160188|gb|EGC72317.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 210

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           PG WSQ V ++I G      RV+A DILDM  I+GV F + DF D +    + + +G   
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILDMNSIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLAKKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G+R
Sbjct: 178 IRSLFSIVKVRKPEASRGRSREVYIVASGYR 208


>gi|156935701|ref|YP_001439617.1| 23S rRNA methyltransferase J [Cronobacter sakazakii ATCC BAA-894]
 gi|156533955|gb|ABU78781.1| hypothetical protein ESA_03570 [Cronobacter sakazakii ATCC BAA-894]
          Length = 213

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG++
Sbjct: 8   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAA 65

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G+     R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 66  PGGWSQYVVTQIGGAG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 121

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 122 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 181

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 182 IRSLFTKVKVRKPDSSRARSREVYIVATG 210


>gi|301109152|ref|XP_002903657.1| ribosomal RNA large subunit methyltransferase J, putative
           [Phytophthora infestans T30-4]
 gi|262097381|gb|EEY55433.1| ribosomal RNA large subunit methyltransferase J, putative
           [Phytophthora infestans T30-4]
          Length = 243

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 5/207 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  W+ R  +DP V++A+ EG R+R+A+KL ++N++ Q+L+    ++DLG++PG W+QV
Sbjct: 31  ASARWVRRQWSDPVVKQAKREGLRSRAAFKLRELNDRFQLLRRGDMVLDLGAAPGGWTQV 90

Query: 85  AARITGSNANNT----RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLV 139
           A   T   +  T    RVVA+D+L  +PI G      DF      + + +A+ G   D+V
Sbjct: 91  AVEATTPKSQKTVGPPRVVAVDLLHFDPIEGASIVVGDFRQAAVRKQLAEALRGRKADVV 150

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G+   D    + LC  A   A   L  GG+F  K  +   + +    LK  
Sbjct: 151 LSDMAPSFSGNFLTDSQHQLRLCHNALKMAELYLRPGGNFATKVLRCDGSEEFRADLKAS 210

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V  +KP +SR ES EMFL+AKGF+
Sbjct: 211 FDVVKGMKPQSSRPESTEMFLVAKGFK 237


>gi|117618251|ref|YP_857802.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|143459211|sp|A0KNF1|RLME_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|117559658|gb|ABK36606.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 209

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL  H +D YV++AQ  G R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ 
Sbjct: 9   SSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQF 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
           A    G   +  RV+A DIL M+ I GV F + DF +      + + +G +  D+V+SDM
Sbjct: 69  AIDQVG---DKGRVIACDILPMDSIAGVDFLQGDFREETVLGALLERVGPDKVDVVMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G +++D  R+M L E A     ++L   G F+VK FQG   +  L  ++K F  V
Sbjct: 126 APNMSGTQQVDQARSMYLVELALDMCNQVLRANGSFVVKVFQGEGFDIYLNEIRKLFTAV 185

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SRA S E++++A GF+
Sbjct: 186 KIRKPDSSRARSREVYIVATGFK 208


>gi|242014003|ref|XP_002427688.1| cell division protein ftsj, putative [Pediculus humanus corporis]
 gi|212512118|gb|EEB14950.1| cell division protein ftsj, putative [Pediculus humanus corporis]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           V  R C+  +S +WL RH ND YV++A+ E +R RSA+KLL+IN+K+ +++    ++D+G
Sbjct: 8   VVGRRCKSFNSTEWLKRHNNDIYVEKAKKENYRCRSAFKLLEINDKYNLVKPGDVVLDVG 67

Query: 76  SSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIR 129
           +SPGSWSQV A  T SN    +     V+AIDI  + PI GV      DF +  S E I+
Sbjct: 68  ASPGSWSQVLASKTNSNGKIDKSPKGTVIAIDISPIFPIEGVTILSNLDFTNESSQEKIK 127

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG- 187
               G   D + SDMA  + G + +D    + L  +  FF++  L  GG  L+K + G  
Sbjct: 128 GITNGEKFDFIFSDMAPKSTGVKSLDQENIIKLLYSVLFFSVNNLKGGGGILLKIWDGQH 187

Query: 188 --TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               NDI    KK F  +  +KP AS   S E +LL + F+
Sbjct: 188 ERLVNDI----KKFFNLLHFIKPKASYKSSSESYLLGREFK 224


>gi|261342622|ref|ZP_05970480.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315270|gb|EFC54208.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cancerogenus ATCC 35316]
          Length = 208

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + +   +G +  
Sbjct: 62  PGGWSQYAVTQIGGTG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A   + ++L  GG F+VK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFEEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFAKVKVRKPDSSRARSREVYIVATG 206


>gi|300718585|ref|YP_003743388.1| ribosomal RNA large subunit methyltransferase [Erwinia billingiae
           Eb661]
 gi|299064421|emb|CAX61541.1| Ribosomal RNA large subunit methyltransferase [Erwinia billingiae
           Eb661]
          Length = 209

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 115/208 (55%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKLGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      GS     RV+  DIL M+PI GV F + DF D    + + + +G N  
Sbjct: 62  PGGWSQYVVTQIGSKG---RVIGCDILPMDPIAGVDFLQGDFRDELVMKALLERVGDNKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG FLVK FQG    D L  +
Sbjct: 119 QVVMSDMAPNMTGTPAVDIPRAMYLVELALEMCRDVLAPGGSFLVKVFQGDGFEDYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|238787587|ref|ZP_04631385.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           frederiksenii ATCC 33641]
 gi|238724374|gb|EEQ16016.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           frederiksenii ATCC 33641]
          Length = 213

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 6/214 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +V
Sbjct: 1   MEKEMSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKIFKPGMTVV 60

Query: 73  DLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           DLG++PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + 
Sbjct: 61  DLGAAPGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLER 116

Query: 132 IGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   +
Sbjct: 117 VGDKKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFD 176

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + L  ++  F KV   KP ASRA S E++++A G
Sbjct: 177 EYLREIRSLFTKVKIRKPDASRARSREVYIVATG 210


>gi|251791042|ref|YP_003005763.1| 23S rRNA methyltransferase J [Dickeya zeae Ech1591]
 gi|247539663|gb|ACT08284.1| ribosomal RNA large subunit methyltransferase J [Dickeya zeae
           Ech1591]
          Length = 209

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V ++I G      R++A DIL M+PI+GV F + DF D    + + + +G +  
Sbjct: 63  GGWSQYVVSQIGGKG----RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDDKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDILAPGGSFVVKVFQGVGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F  V   KP ASRA S E++++A G
Sbjct: 179 RSLFTTVKIRKPDASRARSREVYIVATG 206


>gi|238783522|ref|ZP_04627544.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           bercovieri ATCC 43970]
 gi|238715577|gb|EEQ07567.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+   GSS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSGSSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 63  GGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|238793015|ref|ZP_04636644.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           intermedia ATCC 29909]
 gi|238727615|gb|EEQ19140.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           intermedia ATCC 29909]
          Length = 213

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 6/214 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVV 60

Query: 73  DLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           DLG++PG WSQ V ++I G      R++A D+L M+PI+GV F + DF D    + + + 
Sbjct: 61  DLGAAPGGWSQYVVSQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLER 116

Query: 132 IGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   +
Sbjct: 117 VGDKKVQVVMSDMAPNMCGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFD 176

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + L  ++  F KV   KP ASRA S E++++A G
Sbjct: 177 EYLREIRSLFTKVKIRKPDASRARSREVYIVATG 210


>gi|322368172|ref|ZP_08042741.1| ribosomal RNA large subunit methyltransferase J [Haladaptatus
           paucihalophilus DX253]
 gi|320552188|gb|EFW93833.1| ribosomal RNA large subunit methyltransferase J [Haladaptatus
           paucihalophilus DX253]
          Length = 254

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 4/188 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +++ +G+R+R+AYKL Q++E   +L     +VDLG++PG W QVAA   G     
Sbjct: 5   DHYYNKSKQQGYRSRAAYKLKQLDESAHLLHEGETVVDLGAAPGGWLQVAAEEVGDTGT- 63

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             V+ +D+  ++ I GV+  + D  + ++ E +   + G+ D+VLSDMA    G   +DH
Sbjct: 64  --VIGVDLQRIKDIDGVETIRGDMTEEETQEEVID-VAGSADVVLSDMAPNMTGEYSLDH 120

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R++ L   A   ALE+L+ GGDF+VK FQG   +D+   ++  F+ V  + P ASR ES
Sbjct: 121 ARSVYLARQAFETALELLDSGGDFVVKVFQGPDLDDLREDMEPEFEYVRTMSPDASRDES 180

Query: 216 VEMFLLAK 223
            E++L+A+
Sbjct: 181 SEVYLVAR 188


>gi|332288654|ref|YP_004419506.1| 23S rRNA methyltransferase J [Gallibacterium anatis UMN179]
 gi|330431550|gb|AEC16609.1| 23S rRNA methyltransferase J [Gallibacterium anatis UMN179]
          Length = 209

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H  D +VQ+A  +  R+R+ +KL +I +  ++ + N  +VDLG++
Sbjct: 4   KKRSA--SSTRWLNEHFKDKFVQQAHKQKLRSRAYFKLDEIQKTDKLFKPNMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      G      RV+A DILDM+PI+GV F + DF +      + + IG +  
Sbjct: 62  PGGWSQYVVTQIGERG---RVIACDILDMDPIVGVDFLQGDFREEKVLNTLLEKIGDDKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  +
Sbjct: 119 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASQGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP ASR  S E++++A G++
Sbjct: 179 RSLFKTVKVRKPEASRDRSREVYIVAMGYK 208


>gi|254496115|ref|ZP_05109014.1| ribosomal RNA large subunit methyltransferase J [Legionella
           drancourtii LLAP12]
 gi|254354656|gb|EET13292.1| ribosomal RNA large subunit methyltransferase J [Legionella
           drancourtii LLAP12]
          Length = 196

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 6/198 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARI 88
           +  H +D YV++AQ EG+R+R+ YKL +++EK  +L+    +VDLG++PG W+Q V+ R+
Sbjct: 1   MQEHFDDVYVKKAQAEGYRSRAVYKLKEVDEKESLLKPGMTVVDLGAAPGGWTQYVSERM 60

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPT 147
            G       ++A+DIL M+ +  V     DF + +  + +   I   + DL+LSDMA   
Sbjct: 61  QGRG----HIIALDILPMDSLPDVDVILGDFREDEVLQKLMNLIPERSVDLLLSDMAPNM 116

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID  R M L E A  FA +ML  GG  L+K F G   ++++   K  F +V+  K
Sbjct: 117 SGTTAIDIPRAMYLVELAFDFAEKMLKPGGSMLIKVFHGSGFDELVKQAKASFDRVVIRK 176

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S E +LLAKG+
Sbjct: 177 PSASRARSKETYLLAKGY 194


>gi|85058348|ref|YP_454050.1| 23S rRNA methyltransferase J [Sodalis glossinidius str.
           'morsitans']
 gi|123520134|sp|Q2NW30|RLME_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84778868|dbj|BAE73645.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 209

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFRPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ VA +I G      R++A DIL M+P++GV F + DF +    + + + +G   
Sbjct: 62  PGGWSQYVATQIGGKG----RIIACDILPMDPMVGVDFLQGDFREPLVLQALLERVGEQK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG+FLVK FQG   ++ L  
Sbjct: 118 VQVVVSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGNFLVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP ASRA S E++++A G
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|170765486|ref|ZP_02900297.1| ribosomal RNA large subunit methyltransferase J [Escherichia
           albertii TW07627]
 gi|170124632|gb|EDS93563.1| ribosomal RNA large subunit methyltransferase J [Escherichia
           albertii TW07627]
          Length = 209

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMQALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|194741340|ref|XP_001953147.1| GF17621 [Drosophila ananassae]
 gi|190626206|gb|EDV41730.1| GF17621 [Drosophila ananassae]
          Length = 254

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 118/209 (56%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R + DPYV++A++  +R RSA+KLL++++K+ IL+    ++D G++PGSW+QV
Sbjct: 37  SSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEMDDKYGILRPGDTVLDCGAAPGSWTQV 96

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           A   T +N    R     V +ID+L    + G   F   DF    + + +R+++ G   +
Sbjct: 97  AVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSTLAQKRLRESLNGRQVN 156

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC     FA+ M       +VK +  G    +   + 
Sbjct: 157 CVLSDMAPNATGVRMLDQESITNLCYEVLRFAIAMSAPQAHLVVKVWDNGDVPKLESNML 216

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 217 RFYEKVKRVKPRASRGDSAEHFLVARSFK 245


>gi|51594825|ref|YP_069016.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis IP 32953]
 gi|108806051|ref|YP_649967.1| 23S rRNA methyltransferase J [Yersinia pestis Antiqua]
 gi|108813407|ref|YP_649174.1| 23S rRNA methyltransferase J [Yersinia pestis Nepal516]
 gi|145600799|ref|YP_001164875.1| 23S rRNA methyltransferase J [Yersinia pestis Pestoides F]
 gi|153950455|ref|YP_001402557.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis IP 31758]
 gi|153997280|ref|ZP_02022380.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           CA88-4125]
 gi|161484877|ref|NP_668018.2| 23S rRNA methyltransferase J [Yersinia pestis KIM 10]
 gi|161511441|ref|NP_991973.2| 23S rRNA methyltransferase J [Yersinia pestis biovar Microtus str.
           91001]
 gi|170025952|ref|YP_001722457.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis YPIII]
 gi|186893834|ref|YP_001870946.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis PB1/+]
 gi|218930517|ref|YP_002348392.1| 23S rRNA methyltransferase J [Yersinia pestis CO92]
 gi|229839155|ref|ZP_04459314.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896644|ref|ZP_04511811.1| 23S rRNA methyltransferase [Yersinia pestis Pestoides A]
 gi|229899719|ref|ZP_04514860.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903881|ref|ZP_04518994.1| 23S rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|81516686|sp|Q8ZBB5|RLME_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81640539|sp|Q66F67|RLME_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123073165|sp|Q1CEK6|RLME_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123372780|sp|Q1CC00|RLME_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158514111|sp|A4TRJ0|RLME_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040346|sp|A7FMS9|RLME_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705326|sp|B2K2P8|RLME_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705327|sp|B1JMH7|RLME_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|51588107|emb|CAH19713.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777055|gb|ABG19574.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Nepal516]
 gi|108777964|gb|ABG12022.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Antiqua]
 gi|115349128|emb|CAL22091.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           CO92]
 gi|145212495|gb|ABP41902.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Pestoides F]
 gi|149288917|gb|EDM38997.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           CA88-4125]
 gi|152961950|gb|ABS49411.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752486|gb|ACA70004.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis YPIII]
 gi|186696860|gb|ACC87489.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679651|gb|EEO75754.1| 23S rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|229687211|gb|EEO79286.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695521|gb|EEO85568.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700422|gb|EEO88454.1| 23S rRNA methyltransferase [Yersinia pestis Pestoides A]
 gi|320013706|gb|ADV97277.1| 23S rRNA methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 209

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKQGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A    GS     RV+A D+L M+PI+GV F + DF D    + + + +G     
Sbjct: 63  GGWSQYAVTQIGSKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++
Sbjct: 120 VVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|296104890|ref|YP_003615036.1| 23S rRNA methyltransferase J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059349|gb|ADF64087.1| 23S rRNA methyltransferase J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295097665|emb|CBK86755.1| 23S rRNA Um-2552 2'-O-methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 208

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + +   +G +  
Sbjct: 62  PGGWSQYAVTQIGGTG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFEEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFAKVKVRKPDSSRARSREVYIVATG 206


>gi|325187807|emb|CCA22351.1| ribosomal RNA large subunit methyltransferase J puta [Albugo
           laibachii Nc14]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 120/215 (55%), Gaps = 6/215 (2%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +K K  + + S   W++R  NDPYV++A+ E  R+R+A+KL  +N+K  I++    ++DL
Sbjct: 18  EKEKKHTAKAS---WIHRQWNDPYVKQARRENLRSRAAFKLRDLNKKFDIIRHGDTVLDL 74

Query: 75  GSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           G++PG W+Q+AA  +    + +  RV+A+D++ M+ + G      DF D  +   I Q +
Sbjct: 75  GAAPGGWTQIAAMESCGEYDRDRRRVIAVDLVPMQIVEGASIVMGDFRDSSTRNEIGQLL 134

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+VLSDMA    GH   D  + + LC  A   A   L +GG+F+ K  Q     D
Sbjct: 135 EGRMVDVVLSDMAPRFTGHFLKDSQQQLRLCYNALLMAELYLKVGGNFVTKVLQSEDLED 194

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               +K  F+ V   KP +SR+ES E+F + K +R
Sbjct: 195 FRGQMKTQFKSVKGYKPSSSRSESTELFFIGKEYR 229


>gi|238910090|ref|ZP_04653927.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 208

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ ++   +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKAGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|55379460|ref|YP_137310.1| ribosomal RNA large subunit methyltransferase J [Haloarcula
           marismortui ATCC 43049]
 gi|74516619|sp|Q5UYP9|RLME_HALMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|55232185|gb|AAV47604.1| ribosomal RNA large subunit methyltransferase J [Haloarcula
           marismortui ATCC 43049]
          Length = 263

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ EG+RARSAYKL Q+++   +L   R +VDLG++PG W QVAA   G     
Sbjct: 5   DDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAERIGERGTL 64

Query: 96  TRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIG-----GNP-DLVLSDMAYPTI 148
             V    I D+E P   V++ + D  +  + + IR+ +G     G P D+V+SDMA    
Sbjct: 65  VGVDRQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPVDVVISDMAPNMT 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +DH R++ L   A   A ++L+ GGDF  K F G   +D++  ++  F+ V  V+P
Sbjct: 125 GQYDLDHARSVHLVRQAFEVATDLLDAGGDFCAKVFDGQDLDDLIADIEPEFEYVREVRP 184

Query: 209 VASRAESVEMFLLAK 223
            ASR  S E++L+AK
Sbjct: 185 DASRDSSSELYLVAK 199


>gi|37528355|ref|NP_931700.1| 23S rRNA methyltransferase J [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418111|sp|Q7MYY0|RLME_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|36787793|emb|CAE16908.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) (Cell division protein FtsJ)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 209

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 118/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A       ++N RV+A D+L M+PI+GV F + DF D    + + + +G N   
Sbjct: 63  GGWSQYA---VSQISDNGRVIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDNKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPEGSFIVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F  V   KP ASRA S E++++A G
Sbjct: 180 SLFTNVKIRKPDASRARSREVYIVATG 206


>gi|260771821|ref|ZP_05880739.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           metschnikovii CIP 69.14]
 gi|260613113|gb|EEX38314.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           metschnikovii CIP 69.14]
          Length = 209

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K +    SSR WL  H +D YV  A+ +G+R+R+ +KL +I  K ++L++   +VDLG++
Sbjct: 3   KQKHSASSSR-WLKEHFDDIYVHEAKKKGYRSRAIFKLKEIQSKDKLLRTGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ AA I G   +  +V+A DIL M+ I GV F + DF +      + + I  +  
Sbjct: 62  PGGWSQYAASIVG---DTGQVIACDILPMDSIAGVSFLQGDFREESVLAALIERIQPDMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  +
Sbjct: 119 DVVMSDMAPNMAGNNSVDQPRAMYLVELALDMCRQVLIPNGSFVVKVFQGEGFDHYVQEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SRA S E++++A G++
Sbjct: 179 RSMFKAVKIRKPDSSRARSREVYVVATGYK 208


>gi|304413876|ref|ZP_07395293.1| 23S rRNA methylase [Candidatus Regiella insecticola LSR1]
 gi|304283596|gb|EFL91991.1| 23S rRNA methylase [Candidatus Regiella insecticola LSR1]
          Length = 213

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 115/213 (53%), Gaps = 4/213 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +   + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I    ++ +    +V
Sbjct: 1   MENSMANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQRSDKLFKLGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ A    G      RVVA DIL M+PI+GV F + +F D      + + +
Sbjct: 61  DLGAAPGGWSQYAVSQVGEKG---RVVACDILPMDPIVGVDFLQGNFCDESILNALLERV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G  +ID  R M L E A      +L  GG FLVK  QG   ++
Sbjct: 118 GDKKVQVVMSDMAPNMSGTPEIDIPRAMYLVELALDMCRSILAPGGGFLVKVLQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            L  ++  F KV   KP ASRA S E++++A G
Sbjct: 178 YLREMRSLFMKVKVRKPDASRARSREVYIVATG 210


>gi|283788183|ref|YP_003368048.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951637|emb|CBG91337.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 209

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|15679761|ref|NP_276879.1| cell division protein J [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|9911011|sp|O27801|RLME_METTH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2622903|gb|AAB86239.1| cell division protein J [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 211

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 116/200 (58%), Gaps = 5/200 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W      D Y + A+ E +R+R++YKLLQ+N K+++++   R++DLG++PG WSQVA   
Sbjct: 5   WQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQVALDK 64

Query: 89  TGSNANNTRVVAIDILDME--PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       VVA+D+  ++  P    +  + DF D +  + I + +GG  D+V+SD A  
Sbjct: 65  VGEEG---LVVAVDLQRIKGFPAENFRAIRGDFTDPEVKDKIIRELGGRADVVISDAAPS 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G R IDHLR++ L E     A  +L+  G+ L+K FQG   + ++  L+K F K+   
Sbjct: 122 LSGIRDIDHLRSVDLVENVLDIAYRVLDRKGNILIKAFQGPELDRVIKELRKDFWKLKTT 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S EM+++ + F+
Sbjct: 182 KPASSRKASAEMYIVGRDFK 201


>gi|89072568|ref|ZP_01159140.1| 23S rRNA methylase [Photobacterium sp. SKA34]
 gi|90580530|ref|ZP_01236335.1| 23S rRNA methylase [Vibrio angustum S14]
 gi|89051672|gb|EAR57125.1| 23S rRNA methylase [Photobacterium sp. SKA34]
 gi|90438188|gb|EAS63374.1| 23S rRNA methylase [Photobacterium angustum S14]
          Length = 209

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           GSS  WL  H +D YVQ AQ  G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   GSSGRWLKEHFDDKYVQEAQKRGYRSRAFFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA I GS     +V+A DIL M+ + GV F + DF +    + +   I  +  D+V+SD
Sbjct: 68  YAAEIVGSEG---QVIACDILPMDSLPGVSFLQGDFREEAVLDALLDRIQPDMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+   D  R M L E A     ++L   G F VK FQG   +  L  ++  F+ 
Sbjct: 125 MAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFTVKVFQGEGFDQYLAEIRSMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S E++++A G++
Sbjct: 185 VKIRKPDSSRDRSREVYIVATGYK 208


>gi|50119645|ref|YP_048812.1| 23S rRNA methyltransferase J [Pectobacterium atrosepticum SCRI1043]
 gi|81646184|sp|Q6D9B9|RLME_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49610171|emb|CAG73611.1| ribosomal RNA large subunit methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 209

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V  +I G      R++A DIL M+PI+GV F + DF D    + + + +G +  
Sbjct: 63  GGWSQYVVTQIGGKG----RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLAPGGSFLVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|304314116|ref|YP_003849263.1| 23 S ribosomal RNA methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587575|gb|ADL57950.1| predicted 23 S ribosomal RNA methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 211

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 114/200 (57%), Gaps = 5/200 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W      D Y + A+ E +R+R++YKLLQ+N ++++++   R++DLG++PG WSQVA   
Sbjct: 5   WQAERKRDHYYKSAKRENYRSRASYKLLQLNNRYRLIRKGYRVLDLGAAPGGWSQVALEK 64

Query: 89  TGSNANNTRVVAIDILDME--PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       VVA+D+  ++  P+   +    DF D    E I + +GG  D+V+SD A  
Sbjct: 65  VGEEG---LVVAVDLQRIKGFPVENFRAIMGDFTDPAIKERIIEELGGRADVVISDAAPS 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G R IDHLR++ L E     A  +L   G+ L+K FQG   + ++  +KK F K+   
Sbjct: 122 LSGIRDIDHLRSVDLVENVLDIAYRVLERKGNILIKAFQGPELDKVIKEMKKDFWKLKTT 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S EM+++ + F+
Sbjct: 182 KPASSRKASAEMYIVGRDFK 201


>gi|284006661|emb|CBA71923.1| 23S rRNA methyltransferase J [Arsenophonus nasoniae]
          Length = 209

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 118/207 (57%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G+R+R+ +KL +I +  +I +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVLQAQKKGFRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A    G      R++A D+L M+PI+GV F + DF D    + + + +G     
Sbjct: 63  GGWSQYAVSKVGLTG---RLIACDLLLMDPIVGVDFLQGDFRDEQILKALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  ++
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLATGGSFIVKVFQGEGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASR+ S E++++A G
Sbjct: 180 SLFLKVKIRKPDASRSRSREVYIVATG 206


>gi|62181805|ref|YP_218222.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224585092|ref|YP_002638891.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|75480572|sp|Q57JH1|RLME_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809558|sp|C0PZ62|RLME_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|62129438|gb|AAX67141.1| Ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224469620|gb|ACN47450.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322716292|gb|EFZ07863.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 208

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL+ H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLHEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|90412478|ref|ZP_01220481.1| 23S rRNA methylase [Photobacterium profundum 3TCK]
 gi|90326515|gb|EAS42921.1| 23S rRNA methylase [Photobacterium profundum 3TCK]
          Length = 209

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 117/210 (55%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           +N+    S R WL  H +D YVQ AQ  G+R+R+ +K+ +I  K ++L+    +VDLG++
Sbjct: 3   RNKQSASSGR-WLKEHFDDKYVQEAQKRGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ AA + G   +  +V+A DIL M+ + GV F + DF +      + + I  N  
Sbjct: 62  PGGWSQYAAEVVG---DEGQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPNMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  +
Sbjct: 119 DVVLSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFAVKVFQGEGFDQYLAEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SR  S E++++A G++
Sbjct: 179 RNMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|317027306|ref|XP_001400621.2| ribosomal RNA large subunit methyltransferase J [Aspergillus niger
           CBS 513.88]
          Length = 270

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 124/243 (51%), Gaps = 46/243 (18%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R + D + + A ++G ++R+A+KLLQI+EK+ I +S + +VDLG +PGSWSQV
Sbjct: 29  SSKRWQARQLKDRFTREAAVQGLKSRAAFKLLQIDEKYHIFESGQTVVDLGYAPGSWSQV 88

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD--LDSW--EFIRQAIGGNP---- 136
           A   T  +    RV+ +DI+  +P  GV   + +FLD  + ++  EF+R A  G P    
Sbjct: 89  AVARTQPHG---RVLGVDIIPAQPPKGVSTIQGNFLDPNIQAYVREFVRDANRGRPHPPS 145

Query: 137 -----------------------------------DLVLSDMAYPTIGHRKIDHLRTMSL 161
                                              D+VLSDM   T G    DH  +M L
Sbjct: 146 TILDAEYDDTQLKSDANASSDKQTDPKQWDRNYSVDVVLSDMMMNTSGISFKDHAGSMDL 205

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           C AA  F+ E+L  GG F+ K +QG     +   L+K F+KV  +KP +SR ES E + +
Sbjct: 206 CHAALQFSQEVLRTGGHFVCKFYQGAEDKALEEQLRKLFRKVHRLKPESSRNESKESYFI 265

Query: 222 AKG 224
             G
Sbjct: 266 GLG 268


>gi|225717720|gb|ACO14706.1| ribosomal RNA methyltransferase CG11447 [Caligus clemensi]
          Length = 249

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 117/203 (57%), Gaps = 6/203 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++AQ EG+RARSAYKLL+INEK +IL+    +++ G +PGSW+QV 
Sbjct: 48  SSSWIRRQSKDIYVKKAQSEGYRARSAYKLLEINEKFKILRPKMTVMECGGAPGSWTQVL 107

Query: 86  ARITGSNANNTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +      ++  V++ D+LD +P+   +   + DF    + E I   +  +  DLVLSDM
Sbjct: 108 TQ----KVHSGEVISCDLLDYDPVDHAIILPQSDFTLPQTQEIILGHLKADGFDLVLSDM 163

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  ++ H + ++L    T FAL   N G  FL K + G  T D +  LK+ ++ V
Sbjct: 164 APNASGMSELSHQQILNLSYEVTKFALRHSNKGAIFLTKLWDGEGTQDFISDLKRFYRNV 223

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
             VKP ASR ES E+++ A  F+
Sbjct: 224 QIVKPKASRKESAEIYIYASKFK 246


>gi|242240756|ref|YP_002988937.1| 23S rRNA methyltransferase J [Dickeya dadantii Ech703]
 gi|242132813|gb|ACS87115.1| ribosomal RNA large subunit methyltransferase J [Dickeya dadantii
           Ech703]
          Length = 209

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL ++ +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSTRWLQEHFSDKYVQQAQKKGLRSRAWFKLDELQQSDKLFKLGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V ++I G    N R++A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 63  GGWSQYVVSQIGG----NGRIIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDEKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALGMCRDVLAPGGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F  V   KP ASRA S E++++A G
Sbjct: 179 RTLFTTVKIRKPEASRARSREVYIVATG 206


>gi|15803719|ref|NP_289753.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 EDL933]
 gi|15833312|ref|NP_312085.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. Sakai]
 gi|16131069|ref|NP_417646.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24114468|ref|NP_708978.1| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 301]
 gi|26249762|ref|NP_755802.1| 23S rRNA methyltransferase J [Escherichia coli CFT073]
 gi|30064517|ref|NP_838688.1| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 2457T]
 gi|74313716|ref|YP_312135.1| 23S rRNA methyltransferase J [Shigella sonnei Ss046]
 gi|82545583|ref|YP_409530.1| 23S rRNA methyltransferase J [Shigella boydii Sb227]
 gi|89109942|ref|AP_003722.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91212600|ref|YP_542586.1| 23S rRNA methyltransferase J [Escherichia coli UTI89]
 gi|110643419|ref|YP_671149.1| 23S rRNA methyltransferase J [Escherichia coli 536]
 gi|110807045|ref|YP_690565.1| 23S rRNA methyltransferase J [Shigella flexneri 5 str. 8401]
 gi|117625473|ref|YP_858796.1| 23S rRNA methyltransferase J [Escherichia coli APEC O1]
 gi|157148748|ref|YP_001456067.1| 23S rRNA methyltransferase J [Citrobacter koseri ATCC BAA-895]
 gi|157158192|ref|YP_001464654.1| 23S rRNA methyltransferase J [Escherichia coli E24377A]
 gi|157162662|ref|YP_001459980.1| 23S rRNA methyltransferase J [Escherichia coli HS]
 gi|168754160|ref|ZP_02779167.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4401]
 gi|168765485|ref|ZP_02790492.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4501]
 gi|168781322|ref|ZP_02806329.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786064|ref|ZP_02811071.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC869]
 gi|170018571|ref|YP_001723525.1| 23S rRNA methyltransferase J [Escherichia coli ATCC 8739]
 gi|170082714|ref|YP_001732034.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170681323|ref|YP_001745451.1| 23S rRNA methyltransferase J [Escherichia coli SMS-3-5]
 gi|187730342|ref|YP_001881906.1| 23S rRNA methyltransferase J [Shigella boydii CDC 3083-94]
 gi|188494253|ref|ZP_03001523.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           53638]
 gi|191168046|ref|ZP_03029846.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B7A]
 gi|191172201|ref|ZP_03033744.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           F11]
 gi|194430230|ref|ZP_03062728.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B171]
 gi|195938398|ref|ZP_03083780.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC4024]
 gi|208807870|ref|ZP_03250207.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812489|ref|ZP_03253818.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820270|ref|ZP_03260590.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4042]
 gi|209395973|ref|YP_002272649.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920654|ref|YP_002294738.1| 23S rRNA methyltransferase J [Escherichia coli SE11]
 gi|215488495|ref|YP_002330926.1| 23S rRNA methyltransferase J [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327701|ref|ZP_03443784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. TW14588]
 gi|218550462|ref|YP_002384253.1| 23S rRNA methyltransferase J [Escherichia fergusonii ATCC 35469]
 gi|218555749|ref|YP_002388662.1| 23S rRNA methyltransferase J [Escherichia coli IAI1]
 gi|218560249|ref|YP_002393162.1| 23S rRNA methyltransferase J [Escherichia coli S88]
 gi|218691469|ref|YP_002399681.1| 23S rRNA methyltransferase J [Escherichia coli ED1a]
 gi|218696884|ref|YP_002404551.1| 23S rRNA methyltransferase J [Escherichia coli 55989]
 gi|218701948|ref|YP_002409577.1| 23S rRNA methyltransferase J [Escherichia coli IAI39]
 gi|218706799|ref|YP_002414318.1| 23S rRNA methyltransferase J [Escherichia coli UMN026]
 gi|227887900|ref|ZP_04005705.1| 23S rRNA methyltransferase J [Escherichia coli 83972]
 gi|237706069|ref|ZP_04536550.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           3_2_53FAA]
 gi|238902281|ref|YP_002928077.1| 23S rRNA methyltransferase [Escherichia coli BW2952]
 gi|253771987|ref|YP_003034818.1| 23S rRNA methyltransferase J [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038344|ref|ZP_04872402.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           1_1_43]
 gi|254163121|ref|YP_003046229.1| 23S rRNA methyltransferase J [Escherichia coli B str. REL606]
 gi|254795128|ref|YP_003079965.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018902|ref|ZP_05432767.1| 23S rRNA methyltransferase J [Shigella sp. D9]
 gi|256024246|ref|ZP_05438111.1| 23S rRNA methyltransferase J [Escherichia sp. 4_1_40B]
 gi|260845992|ref|YP_003223770.1| 23S rRNA methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260857306|ref|YP_003231197.1| 23S rRNA methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|261228190|ref|ZP_05942471.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255046|ref|ZP_05947579.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284553|ref|YP_003501371.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406788|ref|ZP_06650714.1| rrmJ [Escherichia coli FVEC1412]
 gi|293416609|ref|ZP_06659248.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B185]
 gi|293449513|ref|ZP_06663934.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B088]
 gi|297520551|ref|ZP_06938937.1| 23S rRNA methyltransferase J [Escherichia coli OP50]
 gi|298382529|ref|ZP_06992126.1| rrmJ [Escherichia coli FVEC1302]
 gi|300817568|ref|ZP_07097784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 107-1]
 gi|300823857|ref|ZP_07103981.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 119-7]
 gi|300897944|ref|ZP_07116322.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 198-1]
 gi|300904366|ref|ZP_07122218.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 84-1]
 gi|300918937|ref|ZP_07135495.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 115-1]
 gi|300926080|ref|ZP_07141899.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 182-1]
 gi|300929871|ref|ZP_07145316.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 187-1]
 gi|300938091|ref|ZP_07152868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 21-1]
 gi|300948830|ref|ZP_07162897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 116-1]
 gi|300955765|ref|ZP_07168109.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 175-1]
 gi|300980088|ref|ZP_07174838.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 200-1]
 gi|300990826|ref|ZP_07179353.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 45-1]
 gi|301022034|ref|ZP_07185977.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 69-1]
 gi|301025976|ref|ZP_07189459.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 196-1]
 gi|301047977|ref|ZP_07195020.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 185-1]
 gi|301301763|ref|ZP_07207897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 124-1]
 gi|301326396|ref|ZP_07219752.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 78-1]
 gi|301644890|ref|ZP_07244861.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 146-1]
 gi|306816479|ref|ZP_07450611.1| 23S rRNA methyltransferase J [Escherichia coli NC101]
 gi|307139865|ref|ZP_07499221.1| 23S rRNA methyltransferase J [Escherichia coli H736]
 gi|307313116|ref|ZP_07592742.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           W]
 gi|309793756|ref|ZP_07688182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 145-7]
 gi|312968483|ref|ZP_07782692.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           2362-75]
 gi|312972547|ref|ZP_07786721.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1827-70]
 gi|331643877|ref|ZP_08345008.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H736]
 gi|331648979|ref|ZP_08350067.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M605]
 gi|331654783|ref|ZP_08355783.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M718]
 gi|331659466|ref|ZP_08360408.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA206]
 gi|331664791|ref|ZP_08365696.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA143]
 gi|331670006|ref|ZP_08370851.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA271]
 gi|331679258|ref|ZP_08379930.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H591]
 gi|331684826|ref|ZP_08385418.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H299]
 gi|332279990|ref|ZP_08392403.1| 23S rRNA methyltransferase [Shigella sp. D9]
 gi|83287968|sp|P0C0R8|RLME_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83287969|sp|P0C0R9|RLME_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83287970|sp|P0C0R7|RLME_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=Cell division protein ftsJ; AltName:
           Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83287971|sp|P0C0S0|RLME_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122422294|sp|Q1R6F9|RLME_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122957976|sp|Q0TCT1|RLME_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123342473|sp|Q0T0A5|RLME_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123558569|sp|Q31W56|RLME_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123616070|sp|Q3YX62|RLME_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459881|sp|A1AG82|RLME_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040334|sp|A7ZS75|RLME_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040685|sp|A8AQ68|RLME_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040688|sp|A8A4Z3|RLME_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040689|sp|B1IQU4|RLME_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703296|sp|B7MBU8|RLME_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703297|sp|B5YS68|RLME_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703298|sp|B7NKP6|RLME_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703299|sp|B7M085|RLME_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703300|sp|B1XGY9|RLME_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703301|sp|B7NDG3|RLME_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703302|sp|B6I1Q2|RLME_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703303|sp|B1LFS9|RLME_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703305|sp|B7LR46|RLME_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705316|sp|B2U1Z8|RLME_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809551|sp|B7UJ72|RLME_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809552|sp|B7LHP2|RLME_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809553|sp|B7N363|RLME_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|259494564|sp|C4ZSR8|RLME_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|12517791|gb|AAG58313.1|AE005546_7 cell division protein [Escherichia coli O157:H7 str. EDL933]
 gi|26110190|gb|AAN82376.1|AE016767_136 Ribosomal RNA large subunit methyltransferase J [Escherichia coli
           CFT073]
 gi|146027|gb|AAA23812.1| ftsJ [Escherichia coli str. K-12 substr. W3110]
 gi|606117|gb|AAA57980.1| ftsJ [Escherichia coli str. K-12 substr. MG1655]
 gi|746400|gb|AAA97507.1| regulatory protein [Escherichia coli]
 gi|1789569|gb|AAC76211.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13363531|dbj|BAB37481.1| cell division protein methyltransferase FtsJ [Escherichia coli
           O157:H7 str. Sakai]
 gi|24053650|gb|AAN44685.1| cell division protein [Shigella flexneri 2a str. 301]
 gi|30042776|gb|AAP18499.1| cell division protein [Shigella flexneri 2a str. 2457T]
 gi|73857193|gb|AAZ89900.1| cell division protein [Shigella sonnei Ss046]
 gi|81246994|gb|ABB67702.1| cell division protein [Shigella boydii Sb227]
 gi|85675973|dbj|BAE77223.1| 23S rRNA methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074174|gb|ABE09055.1| cell division protein [Escherichia coli UTI89]
 gi|110345011|gb|ABG71248.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           536]
 gi|110616593|gb|ABF05260.1| cell division protein [Shigella flexneri 5 str. 8401]
 gi|115514597|gb|ABJ02672.1| cell division protein [Escherichia coli APEC O1]
 gi|157068342|gb|ABV07597.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           HS]
 gi|157080222|gb|ABV19930.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E24377A]
 gi|157085953|gb|ABV15631.1| hypothetical protein CKO_04580 [Citrobacter koseri ATCC BAA-895]
 gi|169753499|gb|ACA76198.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           ATCC 8739]
 gi|169890549|gb|ACB04256.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170519041|gb|ACB17219.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           SMS-3-5]
 gi|187427334|gb|ACD06608.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
           CDC 3083-94]
 gi|188489452|gb|EDU64555.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           53638]
 gi|189001103|gb|EDU70089.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358551|gb|EDU76970.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364840|gb|EDU83256.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373884|gb|EDU92300.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC869]
 gi|190901915|gb|EDV61664.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B7A]
 gi|190907511|gb|EDV67107.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           F11]
 gi|194411731|gb|EDX28055.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B171]
 gi|208727671|gb|EDZ77272.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733766|gb|EDZ82453.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740393|gb|EDZ88075.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157373|gb|ACI34806.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4115]
 gi|209758248|gb|ACI77436.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758250|gb|ACI77437.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758252|gb|ACI77438.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758254|gb|ACI77439.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758256|gb|ACI77440.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209913913|dbj|BAG78987.1| 23S rRNA methyltransferase [Escherichia coli SE11]
 gi|215266567|emb|CAS11006.1| 23S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|217320068|gb|EEC28493.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. TW14588]
 gi|218353616|emb|CAU99813.1| 23S rRNA methyltransferase [Escherichia coli 55989]
 gi|218358003|emb|CAQ90649.1| 23S rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218362517|emb|CAR00141.1| 23S rRNA methyltransferase [Escherichia coli IAI1]
 gi|218367018|emb|CAR04789.1| 23S rRNA methyltransferase [Escherichia coli S88]
 gi|218371934|emb|CAR19790.1| 23S rRNA methyltransferase [Escherichia coli IAI39]
 gi|218429033|emb|CAV17954.1| 23S rRNA methyltransferase [Escherichia coli ED1a]
 gi|218433896|emb|CAR14813.1| 23S rRNA methyltransferase [Escherichia coli UMN026]
 gi|222034896|emb|CAP77639.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           LF82]
 gi|226839968|gb|EEH71989.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           1_1_43]
 gi|226899109|gb|EEH85368.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           3_2_53FAA]
 gi|227835296|gb|EEJ45762.1| 23S rRNA methyltransferase J [Escherichia coli 83972]
 gi|238859756|gb|ACR61754.1| 23S rRNA methyltransferase [Escherichia coli BW2952]
 gi|242378722|emb|CAQ33512.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|253323031|gb|ACT27633.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975022|gb|ACT40693.1| 23S rRNA methyltransferase [Escherichia coli B str. REL606]
 gi|253979178|gb|ACT44848.1| 23S rRNA methyltransferase [Escherichia coli BL21(DE3)]
 gi|254594528|gb|ACT73889.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755955|dbj|BAI27457.1| 23S rRNA methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257761139|dbj|BAI32636.1| 23S rRNA methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260447794|gb|ACX38216.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           DH1]
 gi|281180221|dbj|BAI56551.1| 23S rRNA methyltransferase [Escherichia coli SE15]
 gi|281602562|gb|ADA75546.1| Ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2002017]
 gi|284923202|emb|CBG36296.1| cell division protein [Escherichia coli 042]
 gi|290764426|gb|ADD58387.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322603|gb|EFE62032.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B088]
 gi|291426794|gb|EFE99826.1| rrmJ [Escherichia coli FVEC1412]
 gi|291431965|gb|EFF04948.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B185]
 gi|294490488|gb|ADE89244.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           IHE3034]
 gi|298277669|gb|EFI19185.1| rrmJ [Escherichia coli FVEC1302]
 gi|299879902|gb|EFI88113.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 196-1]
 gi|300300162|gb|EFJ56547.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 185-1]
 gi|300307862|gb|EFJ62382.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 200-1]
 gi|300317360|gb|EFJ67144.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 175-1]
 gi|300358336|gb|EFJ74206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 198-1]
 gi|300397749|gb|EFJ81287.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 69-1]
 gi|300403689|gb|EFJ87227.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 84-1]
 gi|300407046|gb|EFJ90584.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 45-1]
 gi|300413933|gb|EFJ97243.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 115-1]
 gi|300417869|gb|EFK01180.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 182-1]
 gi|300451686|gb|EFK15306.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 116-1]
 gi|300456912|gb|EFK20405.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 21-1]
 gi|300462204|gb|EFK25697.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 187-1]
 gi|300523625|gb|EFK44694.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 119-7]
 gi|300529866|gb|EFK50928.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 107-1]
 gi|300842744|gb|EFK70504.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 124-1]
 gi|300846907|gb|EFK74667.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 78-1]
 gi|301076796|gb|EFK91602.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 146-1]
 gi|305850044|gb|EFM50503.1| 23S rRNA methyltransferase J [Escherichia coli NC101]
 gi|306907027|gb|EFN37535.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           W]
 gi|307625222|gb|ADN69526.1| 23S rRNA methyltransferase J [Escherichia coli UM146]
 gi|308122713|gb|EFO59975.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 145-7]
 gi|309703605|emb|CBJ02945.1| cell division protein [Escherichia coli ETEC H10407]
 gi|310334924|gb|EFQ01129.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1827-70]
 gi|312286701|gb|EFR14612.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           2362-75]
 gi|312947736|gb|ADR28563.1| 23S rRNA methyltransferase J [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648578|gb|EFS13020.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2a str. 2457T]
 gi|315062485|gb|ADT76812.1| 23S rRNA methyltransferase [Escherichia coli W]
 gi|315137765|dbj|BAJ44924.1| ribosomal RNA large subunit methyltransferase [Escherichia coli
           DH1]
 gi|315257104|gb|EFU37072.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 85-1]
 gi|315288957|gb|EFU48355.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 110-3]
 gi|315294886|gb|EFU54225.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 153-1]
 gi|315297891|gb|EFU57161.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 16-3]
 gi|315617262|gb|EFU97871.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           3431]
 gi|320174543|gb|EFW49679.1| 23S rRNA methyltransferase J [Shigella dysenteriae CDC 74-1112]
 gi|320181454|gb|EFW56372.1| 23S rRNA methyltransferase J [Shigella boydii ATCC 9905]
 gi|320186666|gb|EFW61390.1| 23S rRNA methyltransferase J [Shigella flexneri CDC 796-83]
 gi|320189532|gb|EFW64191.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC1212]
 gi|320194664|gb|EFW69294.1| 23S rRNA methyltransferase J [Escherichia coli WV_060327]
 gi|320202093|gb|EFW76668.1| 23S rRNA methyltransferase J [Escherichia coli EC4100B]
 gi|320640250|gb|EFX09822.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. G5101]
 gi|320645547|gb|EFX14556.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. 493-89]
 gi|320650857|gb|EFX19314.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. H 2687]
 gi|320656238|gb|EFX24150.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661928|gb|EFX29336.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666763|gb|EFX33742.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. LSU-61]
 gi|323154393|gb|EFZ40594.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           EPECa14]
 gi|323162871|gb|EFZ48706.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E128010]
 gi|323165139|gb|EFZ50929.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
           53G]
 gi|323173561|gb|EFZ59190.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           LT-68]
 gi|323183133|gb|EFZ68531.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1357]
 gi|323189200|gb|EFZ74484.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           RN587/1]
 gi|323376927|gb|ADX49195.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           KO11]
 gi|323936127|gb|EGB32421.1| ribosomal RNA large methyltransferase J [Escherichia coli E1520]
 gi|323941721|gb|EGB37900.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E482]
 gi|323946967|gb|EGB42983.1| ribosomal RNA large methyltransferase J [Escherichia coli H120]
 gi|323951302|gb|EGB47177.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H252]
 gi|323957674|gb|EGB53388.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H263]
 gi|323961166|gb|EGB56780.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H489]
 gi|323966359|gb|EGB61793.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M863]
 gi|323970258|gb|EGB65529.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA007]
 gi|323979104|gb|EGB74182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TW10509]
 gi|324008750|gb|EGB77969.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 57-2]
 gi|324012132|gb|EGB81351.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 60-1]
 gi|324018296|gb|EGB87515.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 117-3]
 gi|324119544|gb|EGC13426.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E1167]
 gi|326337879|gb|EGD61713.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1125]
 gi|326347449|gb|EGD71174.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1044]
 gi|327251270|gb|EGE62959.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           STEC_7v]
 gi|330909233|gb|EGH37747.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase E [Escherichia coli AA86]
 gi|331037348|gb|EGI09572.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H736]
 gi|331042726|gb|EGI14868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M605]
 gi|331048165|gb|EGI20242.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M718]
 gi|331054048|gb|EGI26077.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA206]
 gi|331058039|gb|EGI30021.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA143]
 gi|331062919|gb|EGI34833.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA271]
 gi|331073323|gb|EGI44646.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H591]
 gi|331078441|gb|EGI49647.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H299]
 gi|332086091|gb|EGI91253.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
           5216-82]
 gi|332086420|gb|EGI91567.1| ribosomal RNA large subunit methyltransferase J [Shigella
           dysenteriae 155-74]
 gi|332090681|gb|EGI95775.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
           3594-74]
 gi|332102342|gb|EGJ05688.1| 23S rRNA methyltransferase [Shigella sp. D9]
 gi|332345135|gb|AEE58469.1| ribosomal RNA large subunit methyltransferase RrmJ [Escherichia
           coli UMNK88]
 gi|332752338|gb|EGJ82728.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           4343-70]
 gi|332752864|gb|EGJ83249.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-671]
 gi|332754691|gb|EGJ85057.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2747-71]
 gi|332765175|gb|EGJ95402.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2930-71]
 gi|332998821|gb|EGK18417.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           VA-6]
 gi|332999257|gb|EGK18843.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-272]
 gi|332999886|gb|EGK19469.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-218]
 gi|333014527|gb|EGK33874.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-304]
 gi|333014980|gb|EGK34324.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-227]
          Length = 209

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|260869930|ref|YP_003236332.1| 23S rRNA methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257766286|dbj|BAI37781.1| 23S rRNA methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323178645|gb|EFZ64221.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1180]
 gi|324115217|gb|EGC09181.1| ribosomal RNA large subunit methyltransferase J [Escherichia
           fergusonii B253]
 gi|325498760|gb|EGC96619.1| 23S rRNA methyltransferase J [Escherichia fergusonii ECD227]
          Length = 209

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYVVNQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|293412551|ref|ZP_06655274.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B354]
 gi|291469322|gb|EFF11813.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B354]
          Length = 209

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKTLLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|146313247|ref|YP_001178321.1| 23S rRNA methyltransferase J [Enterobacter sp. 638]
 gi|189040690|sp|A4WEZ0|RLME_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|145320123|gb|ABP62270.1| 23S rRNA Um-2552 2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 208

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    IVDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTIVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + + + +G +  
Sbjct: 62  PGGWSQYAVTQIGGQG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A   + ++L  GG F+VK FQG    + L  +
Sbjct: 119 QVVMSDMAPNMCGTPAVDIPRSMYLVELALEMSRDVLAPGGSFVVKVFQGEGFEEYLKEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP +SRA S E++++A G
Sbjct: 179 RSLFAKVKVRKPDSSRARSREVYIVATG 206


>gi|209694183|ref|YP_002262111.1| 23S rRNA methyltransferase J [Aliivibrio salmonicida LFI1238]
 gi|226703281|sp|B6END5|RLME_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|208008134|emb|CAQ78276.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Aliivibrio salmonicida LFI1238]
          Length = 209

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           KN+    S R WL  H +D YV  AQ  G+R+R+ +KL +I  K ++L+    +VDLG++
Sbjct: 3   KNKLSASSGR-WLKEHFDDKYVLEAQKRGYRSRAIFKLEEIQNKDKLLKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ A    G   ++ +V+A DIL M+ I GV F + DF +    + + + I  +  
Sbjct: 62  PGGWSQYAVEQVG---DSGQVIACDILAMDSIAGVSFLQGDFREEAVLDALLERIQPDMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D  R+M L E A     ++L   G F VK FQG + +  L  +
Sbjct: 119 DVVMSDMAPNMSGNPSVDQPRSMYLVELALDMCRQVLAPNGSFTVKVFQGESFDAYLQEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K F+ V   KP +SRA S E++++A G++
Sbjct: 179 RKVFKVVKIRKPDSSRARSREVYIVATGYK 208


>gi|16766593|ref|NP_462208.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161616304|ref|YP_001590269.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552057|ref|ZP_02345810.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167995303|ref|ZP_02576393.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231905|ref|ZP_02656963.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237996|ref|ZP_02663054.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168243130|ref|ZP_02668062.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168262693|ref|ZP_02684666.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463481|ref|ZP_02697398.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819637|ref|ZP_02831637.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194443123|ref|YP_002042553.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450102|ref|YP_002047325.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471555|ref|ZP_03077539.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736185|ref|YP_002116245.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197247415|ref|YP_002148221.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265976|ref|ZP_03166050.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198244059|ref|YP_002217269.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387675|ref|ZP_03214287.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205354198|ref|YP_002227999.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858545|ref|YP_002245196.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|81521544|sp|Q8ZLS7|RLME_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040331|sp|A9N744|RLME_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705306|sp|B5F6U7|RLME_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705307|sp|B5FI23|RLME_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705308|sp|B5R0H0|RLME_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705309|sp|B5REP5|RLME_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705310|sp|B4TJ16|RLME_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705311|sp|B4T708|RLME_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705313|sp|B4TWE7|RLME_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|16421855|gb|AAL22167.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365668|gb|ABX69436.1| hypothetical protein SPAB_04112 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401786|gb|ACF62008.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194408406|gb|ACF68625.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457919|gb|EDX46758.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711687|gb|ACF90908.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633188|gb|EDX51602.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197211118|gb|ACH48515.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244231|gb|EDY26851.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289104|gb|EDY28473.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938575|gb|ACH75908.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604773|gb|EDZ03318.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205273979|emb|CAR38985.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205323210|gb|EDZ11049.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327001|gb|EDZ13765.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333841|gb|EDZ20605.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337840|gb|EDZ24604.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343455|gb|EDZ30219.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348567|gb|EDZ35198.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206710348|emb|CAR34706.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261248462|emb|CBG26299.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995494|gb|ACY90379.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159846|emb|CBW19365.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914321|dbj|BAJ38295.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087741|emb|CBY97505.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225980|gb|EFX51034.1| Cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase E ; LSU rRNA Um [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615300|gb|EFY12221.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618341|gb|EFY15232.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622854|gb|EFY19698.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626824|gb|EFY23621.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631393|gb|EFY28153.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635340|gb|EFY32054.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643339|gb|EFY39903.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647089|gb|EFY43590.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648892|gb|EFY45337.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655084|gb|EFY51395.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657687|gb|EFY53955.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664183|gb|EFY60381.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667466|gb|EFY63628.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674714|gb|EFY70806.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675653|gb|EFY71726.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682289|gb|EFY78312.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684892|gb|EFY80890.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131656|gb|ADX19086.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195903|gb|EFZ81074.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199020|gb|EFZ84117.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204280|gb|EFZ89289.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207627|gb|EFZ92574.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211320|gb|EFZ96164.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214738|gb|EFZ99487.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221218|gb|EGA05644.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224041|gb|EGA08334.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230310|gb|EGA14429.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233286|gb|EGA17380.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239323|gb|EGA23373.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242426|gb|EGA26452.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246936|gb|EGA30902.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254131|gb|EGA37951.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255248|gb|EGA39025.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262711|gb|EGA46267.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264021|gb|EGA47529.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269407|gb|EGA52862.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625047|gb|EGE31392.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629319|gb|EGE35662.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990154|gb|AEF09137.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 208

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|146413993|ref|XP_001482967.1| hypothetical protein PGUG_04922 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 256

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G+S    L  +++++S   S R WL R  +DP+ + A+ + +R+R+AYKL++++ K  + 
Sbjct: 34  GTSKHCQLNVQIRSKSSVSSER-WLRRQKDDPHTKEAKKQHYRSRAAYKLIELDHKFLLF 92

Query: 66  QSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           + N  RIVDLG +PG+W+QVA +         +++ +DI+   P  G +F   D     +
Sbjct: 93  KRNTLRIVDLGFAPGAWTQVAMQRMAQLGQKPKILGVDIIPSTPPEGAQFLHGDIFSRKT 152

Query: 125 WEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            + IR     N  DLV+SDM   T+G +  DHL +M LCE A   A   L   G  ++K 
Sbjct: 153 HQEIRDNFPNNEVDLVMSDMMANTLGIKDNDHLASMELCEGALMLAASTLKTNGALVMKF 212

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + G     +    +K F+KV  +KP A R E  EM+ +  G
Sbjct: 213 YTGREERQLEEKCRKMFKKVHRMKPSACRPELREMYFVCLG 253


>gi|307129377|ref|YP_003881393.1| cell division protein ftsJ/Ribosomal RNA large subunit
           methyltransferase J [Dickeya dadantii 3937]
 gi|306526906|gb|ADM96836.1| Cell division protein ftsJ / Ribosomal RNA large subunit
           methyltransferase J [Dickeya dadantii 3937]
          Length = 209

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDRLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V ++I G      R++A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 63  GGWSQYVVSQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDEKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G  ++D  R M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPEVDIPRAMYLVELALDMCRDILAPGGSFVVKVFQGVGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F  V   KP ASRA S E++++A G
Sbjct: 179 RSLFTTVKIRKPDASRARSREVYIVATG 206


>gi|56415226|ref|YP_152301.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364156|ref|YP_002143793.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81361508|sp|Q5PLC1|RLME_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705312|sp|B5BGK3|RLME_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56129483|gb|AAV78989.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095633|emb|CAR61201.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 208

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKIRKPDSSRARSREVYIVATG 206


>gi|161506140|ref|YP_001573252.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189040330|sp|A9MP28|RLME_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160867487|gb|ABX24110.1| hypothetical protein SARI_04328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 208

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGRG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|16762059|ref|NP_457676.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143548|ref|NP_806890.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213027549|ref|ZP_03341996.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213420316|ref|ZP_03353382.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425425|ref|ZP_03358175.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213584091|ref|ZP_03365917.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646996|ref|ZP_03377049.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852787|ref|ZP_03382319.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289804406|ref|ZP_06535035.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825808|ref|ZP_06544976.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|81512806|sp|Q8Z3H3|RLME_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|25311089|pir||AH0902 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504362|emb|CAD07814.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139183|gb|AAO70750.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 208

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 8/209 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++  F KV   KP +SRA S E++++A G
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATG 206


>gi|327396254|dbj|BAK13676.1| ribosomal RNA large subunit methyltransferase J RrmJ [Pantoea
           ananatis AJ13355]
          Length = 209

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ   +  GS     RV+A DIL M+PI+GV F + DF +    + + + +G    
Sbjct: 62  PGGWSQYVVQQIGSKG---RVIACDILPMDPIVGVDFLQGDFREESVIKALLERVGEQKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDILAPGGSFVVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|262163950|ref|ZP_06031689.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus VM223]
 gi|262172288|ref|ZP_06039966.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus MB-451]
 gi|261893364|gb|EEY39350.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus MB-451]
 gi|262027478|gb|EEY46144.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus VM223]
          Length = 209

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA++ G      RV+A D+L ME I GV F + DF +      +   I     D+V+SD
Sbjct: 68  FAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPEMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR+ S E+F++A G++
Sbjct: 185 VKIRKPDSSRSRSREVFIVATGYK 208


>gi|195353572|ref|XP_002043278.1| GM26867 [Drosophila sechellia]
 gi|194127392|gb|EDW49435.1| GM26867 [Drosophila sechellia]
          Length = 250

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ ILQ    +++ G++PGSW+QV
Sbjct: 37  SSQEWLTRQLTDPYVEKARMMNYRCRSAFKLLEIDDKYGILQPGDTVLECGAAPGSWTQV 96

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           A   T +N    R     V +ID+L    + G   F   DF    + + +R+A+     +
Sbjct: 97  AVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLREAVQHRKVN 156

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC     FAL M       +VK +  G    +   + 
Sbjct: 157 CVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKLERDML 216

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 217 RFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|258623149|ref|ZP_05718160.1| cell division protein FtsJ [Vibrio mimicus VM573]
 gi|258625327|ref|ZP_05720227.1| cell division protein FtsJ [Vibrio mimicus VM603]
 gi|258582393|gb|EEW07242.1| cell division protein FtsJ [Vibrio mimicus VM603]
 gi|258584569|gb|EEW09307.1| cell division protein FtsJ [Vibrio mimicus VM573]
          Length = 264

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 4/212 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG
Sbjct: 55  KMSKQKHSASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLG 114

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I   
Sbjct: 115 AAPGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPE 171

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D + 
Sbjct: 172 MVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVK 231

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 232 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 263


>gi|329297291|ref|ZP_08254627.1| 23S rRNA methyltransferase J [Plautia stali symbiont]
          Length = 209

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ   +  GS     R++A D+L ++PI GV F + DF D    + + + +G    
Sbjct: 62  PGGWSQYVVQQIGSGG---RIIACDLLPIDPIGGVDFLQGDFRDEAVLKALLERVGDQKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFVVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|145632764|ref|ZP_01788497.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 3655]
 gi|144986420|gb|EDJ92986.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 3655]
          Length = 211

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 123/212 (58%), Gaps = 8/212 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    + + +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           ++  F  V   KP ASR  S E++++A G+++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYKE 209


>gi|291616003|ref|YP_003518745.1| RrmJ [Pantoea ananatis LMG 20103]
 gi|291151033|gb|ADD75617.1| RrmJ [Pantoea ananatis LMG 20103]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 18  KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAA 75

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ   +  GS     RV+A DIL M+PI+GV F + DF +    + + + +G    
Sbjct: 76  PGGWSQYVVQQIGSKG---RVIACDILPMDPIVGVDFLQGDFREESVIKALLERVGEQKV 132

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 133 QVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDILAPGGSFVVKVFQGDGFDEYLREI 192

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 193 RSLFTKVKIRKPDASRSRSREVYIVATG 220


>gi|238757569|ref|ZP_04618754.1| Ribosomal RNA large subunit methyltransferase J [Yersinia aldovae
           ATCC 35236]
 gi|238704331|gb|EEP96863.1| Ribosomal RNA large subunit methyltransferase J [Yersinia aldovae
           ATCC 35236]
          Length = 209

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ A    G      RV+A D+L M+PI+GV F + DF D    + + + +G     
Sbjct: 63  GGWSQYAVTQIGGKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++
Sbjct: 120 VVMCDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|71028686|ref|XP_763986.1| ribosomal RNA methyltransferase [Theileria parva strain Muguga]
 gi|68350940|gb|EAN31703.1| ribosomal RNA methyltransferase, putative [Theileria parva]
          Length = 247

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 119/211 (56%), Gaps = 11/211 (5%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S +W+ R I+D Y+ +  ++ +R+RSAYKL+++++K+ I + N+ +V+LG  PG W+QVA
Sbjct: 14  SSEWVRRQISDRYLIQKHIDNYRSRSAYKLIELDDKYFIFRKNQTVVELGCYPGGWAQVA 73

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
              T + A+++RV+ ID   ++PI    F K +  D ++   +   + G   D+VLSD+A
Sbjct: 74  LERTLTGASSSRVIGIDKTQIDPIPNYDFIKGEINDQETHNKLLTLLDGVKADVVLSDLA 133

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G +  DHL +  LC  AT    +++ +GG F+VK F GG  +     L+  F +V 
Sbjct: 134 PNCTGIKMDDHLNSAELCLQATSLMEKVITVGGTFVVKIFMGGQLDRYKTYLRSLFSEVR 193

Query: 205 HVKPV----------ASRAESVEMFLLAKGF 225
             KP           A R+ES EM+ + K F
Sbjct: 194 SSKPKLVDFHFTFCRACRSESKEMYFVCKKF 224


>gi|221060839|ref|XP_002261989.1| ribosomal RNA methyltransferase [Plasmodium knowlesi strain H]
 gi|193811139|emb|CAQ41867.1| ribosomal RNA methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 266

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 18/222 (8%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KV N+    SS+ W+ R I D YV +A+ + +R+R+AYKL++++ K+  L+ N+ I+D+G
Sbjct: 28  KVLNKKSSHSSQ-WIQRQITDRYVLKAKNDNYRSRAAYKLIELDNKYMFLKKNKIILDIG 86

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD------------FLDLD 123
             PGSW QV    T + +N   ++ ID   M+P+  + F   +             +D+ 
Sbjct: 87  CYPGSWCQVILERTKNYSN--EIIGIDKKIMDPLPNIHFIHAEIGGAKDSTNHNNLVDVK 144

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
             E ++   G   D++LSD A P +G++  DHL +  L    T F  + +N+GG ++VK 
Sbjct: 145 LREILQ---GKKVDIILSDAAVPCVGNKIDDHLNSCELTLGITNFMEQYINMGGTYVVKM 201

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           + G  T+++   LK  FQ V   KP ASR ES E++L+ + F
Sbjct: 202 YLGSQTDNLKTYLKTIFQFVNTTKPKASRRESREVYLVCRNF 243


>gi|271499167|ref|YP_003332192.1| ribosomal RNA large subunit methyltransferase J [Dickeya dadantii
           Ech586]
 gi|270342722|gb|ACZ75487.1| ribosomal RNA large subunit methyltransferase J [Dickeya dadantii
           Ech586]
          Length = 209

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V ++I G      R++A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 63  GGWSQYVVSQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDEKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDILAPGGSFVVKVFQGVGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F  V   KP ASRA S E++++A G
Sbjct: 179 RSLFTTVKIRKPDASRARSREVYIVATG 206


>gi|145630774|ref|ZP_01786552.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae R3021]
 gi|144983656|gb|EDJ91116.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae R3021]
          Length = 209

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 122/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    + + +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|54307808|ref|YP_128828.1| 23S rRNA methyltransferase J [Photobacterium profundum SS9]
 gi|81400134|sp|Q6LUJ9|RLME_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|46912231|emb|CAG19026.1| 23S rRNA methylase [Photobacterium profundum SS9]
          Length = 209

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 118/210 (56%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           +N+    S R WL  H +D YVQ AQ  G+R+R+ +K+ +I +K ++L+    +VDLG++
Sbjct: 3   RNKQSASSGR-WLKEHFDDKYVQEAQKRGYRSRAIFKIEEIQKKDKLLKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ AA + G   +  +V+A DIL M+ + GV F + DF +      + + I  +  
Sbjct: 62  PGGWSQYAAEVVG---DEGQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPDMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  +
Sbjct: 119 DVVLSDMAPNMSGNLASDQPRAMYLVELALEMCKQVLAPNGSFAVKVFQGEGFDQYLAEI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SR  S E++++A G++
Sbjct: 179 RNMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|238755149|ref|ZP_04616495.1| Ribosomal RNA large subunit methyltransferase J [Yersinia ruckeri
           ATCC 29473]
 gi|238706596|gb|EEP98967.1| Ribosomal RNA large subunit methyltransferase J [Yersinia ruckeri
           ATCC 29473]
          Length = 213

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 6/214 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMANKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVV 60

Query: 73  DLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           DLG++PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + 
Sbjct: 61  DLGAAPGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLER 116

Query: 132 IGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   +
Sbjct: 117 VGEKKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFD 176

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + L  ++  F KV   KP ASRA S E++++A G
Sbjct: 177 EYLREIRSLFTKVKIRKPDASRARSREVYIVATG 210


>gi|329910110|ref|ZP_08275236.1| Ribosomal RNA large subunit methyltransferase J [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546263|gb|EGF31294.1| Ribosomal RNA large subunit methyltransferase J [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-V 84
           +++WL+ HINDPYV+ AQ EG+RAR+ YKL +I+E  +++++ + IVDLGS+PGSWSQ V
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDEGDKLIKAGQIIVDLGSTPGSWSQYV 66

Query: 85  AARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
             +++G      +  ++ +D+L M+PI  V F   DF D      +   + G   D+VLS
Sbjct: 67  RNKLSGKAGGGIDGIIIGLDMLPMDPIADVHFILGDFRDHKVLRQLEVILAGRKVDVVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   + + A  F+   L   G  LVK F G   + I+   +  F+
Sbjct: 127 DMAPNLSGIASADAARMEHIIDLAIEFSQAHLKPSGALLVKCFNGSGYSQIVEKFRSEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP AS+ +S E+FLL KG +
Sbjct: 187 TVSPKKPKASKDKSSEIFLLGKGVK 211


>gi|300113259|ref|YP_003759834.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
           C-113]
 gi|299539196|gb|ADJ27513.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
           C-113]
          Length = 212

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 4/200 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H  D YV +A+ +G+R+R+ +KL QI+ + ++L     IVDLG++PG WSQ AA  
Sbjct: 11  WLREHFRDSYVTQAKAQGYRSRAVFKLQQIDARERLLCPGSVIVDLGAAPGGWSQWAADR 70

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G      +V+A+DIL M P  GV+F + DF + +    ++  +     DLV+SDMA   
Sbjct: 71  VGERG---QVIALDILPMLPYPGVRFIQGDFREDNILVELQNTLTDCAVDLVMSDMAPNM 127

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  R + L E A  FA E L   G FL+KTFQG   + +  ++++ F +V   K
Sbjct: 128 SGMAAVDQPRVIYLGELALAFAQESLGPEGSFLLKTFQGEGFDTLYEVIRQDFSQVRIHK 187

Query: 208 PVASRAESVEMFLLAKGFRK 227
           P ASR  S E++++A+  RK
Sbjct: 188 PPASRGRSREVYIVARRSRK 207


>gi|308189106|ref|YP_003933237.1| cell division protein [Pantoea vagans C9-1]
 gi|308059616|gb|ADO11788.1| cell division protein [Pantoea vagans C9-1]
          Length = 209

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ   +  G   N  R++A DIL M+PI+GV F + DF +      + + +G    
Sbjct: 62  PGGWSQYVVQQIG---NKGRIIACDILPMDPIVGVDFLQGDFREESVINALLERVGDQKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|309973146|gb|ADO96347.1| 23S rRNA U2552 ribose 2-O-methyltransferase, SAM-dependent
           [Haemophilus influenzae R2846]
          Length = 209

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLATKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|68250003|ref|YP_249115.1| 23S rRNA methyltransferase J [Haemophilus influenzae 86-028NP]
 gi|229847493|ref|ZP_04467590.1| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1]
 gi|81335573|sp|Q4QKJ2|RLME_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|68058202|gb|AAX88455.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 86-028NP]
 gi|229809634|gb|EEP45361.1| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1]
          Length = 209

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|262274890|ref|ZP_06052701.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
 gi|262221453|gb|EEY72767.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
          Length = 209

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 4/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H +D YVQ AQ +G+R+R+ +KL +I  K ++L+    +VDLG++PG WSQ AA  
Sbjct: 13  WLKEHFDDKYVQEAQKKGFRSRAIFKLEEIQGKDKLLKPGMTVVDLGAAPGGWSQYAAEQ 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
            G   ++ +V+A DIL M+ + GV F + DF +      +   I  +  D+V+SDMA   
Sbjct: 73  VG---DSGQVIACDILPMDSLPGVAFLQGDFREEAVLNALLDRIQPDMVDVVMSDMAPNM 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G+   D  R M L E A     E+L   G F+VK FQG   +  L  ++K F+ V   K
Sbjct: 130 SGNLVSDQARAMYLVELALDMCREVLAPNGSFIVKVFQGEGFDQYLAEVRKMFKAVKIRK 189

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SRA S E++++A G++
Sbjct: 190 PDSSRARSREVYIVATGYK 208


>gi|241953819|ref|XP_002419631.1| 2'-O-ribose tRNA anticodon loop methyltransferase, putative; tRNA
           (uridine-2'-O-)-methyltransferase, putative [Candida
           dubliniensis CD36]
 gi|223642971|emb|CAX43227.1| 2'-O-ribose tRNA anticodon loop methyltransferase, putative
           [Candida dubliniensis CD36]
          Length = 293

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           N+   D Y +RA+ EGWRARSA+KLLQ+NE+  + +   R+VDL ++PGSWSQV ++  G
Sbjct: 5   NKDKRDLYYRRAKEEGWRARSAFKLLQLNEEFDLFEGITRVVDLCAAPGSWSQVLSQKLG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
            N+    +VA+D+  M PI GV   + D     + + IR   GG P D V SD A    G
Sbjct: 65  PNST---IVAVDLQPMTPIDGVTTIQADITHPKTLQRIRDCFGGEPADFVCSDGAPDVTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  +A      +L  GG F+ K F+G   + +   L   F KVI  KP 
Sbjct: 122 LHDLDEYIQSQLILSALQLTTCLLKPGGSFVAKIFRGRDIDLLYSQLSYLFDKVICAKPR 181

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++  G++
Sbjct: 182 SSRGTSLEAFIVCLGYK 198


>gi|319897097|ref|YP_004135292.1| 23S rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|317432601|emb|CBY80962.1| 23S rRNA methyltransferase [Haemophilus influenzae F3031]
          Length = 209

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLACVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|148826009|ref|YP_001290762.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae PittEE]
 gi|148716169|gb|ABQ98379.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae PittEE]
          Length = 239

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 121/211 (57%), Gaps = 6/211 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           + ++   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 32  ERKNVTASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 91

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 92  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEAK 147

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 148 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 207

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 208 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 238


>gi|33152554|ref|NP_873907.1| 23S rRNA methyltransferase J [Haemophilus ducreyi 35000HP]
 gi|81423348|sp|Q7VLF2|RLME_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33148778|gb|AAP96296.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           ducreyi 35000HP]
          Length = 208

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 3   KKRSA--SSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQSDRLFRPGMTVVDLGAA 60

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ A    G   N  R++A DILDM PI+GV F + DF ++     +   +G    
Sbjct: 61  PGGWSQYAVTQIG---NQGRIIACDILDMNPIVGVDFLQGDFREVSVLNALLARVGDEMV 117

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  +
Sbjct: 118 DVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDI 177

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP ASR  S E++++A G++
Sbjct: 178 RSMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|167856350|ref|ZP_02479078.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parasuis 29755]
 gi|167852517|gb|EDS23803.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parasuis 29755]
          Length = 208

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           +R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   DRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKHGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPD 137
           G WSQ      G   +  RV+A DILDM PI+GV F + DF +      + + +G G  D
Sbjct: 62  GGWSQYVVTQIG---DKGRVIACDILDMNPIVGVDFLQGDFCEESVLNALLERVGEGKVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 SLFNVVKVRKPEASRDRSREVYIVATGYK 207


>gi|46143709|ref|ZP_00134554.2| COG0293: 23S rRNA methylase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208076|ref|YP_001053301.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae L20]
 gi|165976009|ref|YP_001651602.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149909|ref|YP_001968434.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307245455|ref|ZP_07527543.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247568|ref|ZP_07529612.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251350|ref|ZP_07533266.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254409|ref|ZP_07536247.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256619|ref|ZP_07538399.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258868|ref|ZP_07540600.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263233|ref|ZP_07544853.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|158513505|sp|A3MZW0|RLME_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703278|sp|B3H123|RLME_ACTP7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703279|sp|B0BUF3|RLME_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|126096868|gb|ABN73696.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876110|gb|ABY69158.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189915040|gb|ACE61292.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306853796|gb|EFM86013.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855933|gb|EFM88092.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306856591|gb|EFM88731.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306862708|gb|EFM94664.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864867|gb|EFM96770.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867219|gb|EFM99075.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306871450|gb|EFN03174.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 208

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|260775431|ref|ZP_05884328.1| cell division protein FtsJ [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608612|gb|EEX34777.1| cell division protein FtsJ [Vibrio coralliilyticus ATCC BAA-450]
          Length = 209

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D +   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKFANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA+I G   +  +++A D+L M+PI GV F + DF +    E +   I  +  ++V+SD
Sbjct: 68  YAAKIVG---DEGKIIACDLLPMDPIAGVSFLQGDFREDAVLEALLDRIQPSMVNVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  ++  F+ 
Sbjct: 125 MAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKDVRDMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SRA S E+F++A G++
Sbjct: 185 VKIRKPDSSRARSREVFIVATGYK 208


>gi|195569596|ref|XP_002102795.1| GD19317 [Drosophila simulans]
 gi|194198722|gb|EDX12298.1| GD19317 [Drosophila simulans]
          Length = 250

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 10/225 (4%)

Query: 12  GLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           G   K + R+ +G   SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ ILQ  
Sbjct: 21  GKYAKQQPRNLKGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILQPG 80

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDL 122
             +++ G++PGSW+QVA   T +N    R     V +ID+L    + G   F   DF   
Sbjct: 81  DTVLECGAAPGSWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTTS 140

Query: 123 DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            + + +R+A+     + VLSDMA    G R +D     +LC     FAL M       +V
Sbjct: 141 LAQKRLREALQHRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV 200

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +  G    +   + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 201 KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|318607368|emb|CBY28866.1| cell division protein FtsJ; ribosomal RNA large subunit
           methyltransferase E [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 209

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 4/207 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      G   +  RV+A D+L M+PI+GV F + DF D    + + + +G     
Sbjct: 63  GGWSQYVVTQIG---DKGRVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+ DMA    G   +D  ++M L E A     ++L  GG+FLVK FQG   ++ L  ++
Sbjct: 120 VVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGNFLVKVFQGDGFDEYLREIR 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
             F KV   KP ASRA S E++++A G
Sbjct: 180 SLFTKVKIRKPDASRARSREVYIVATG 206


>gi|145636180|ref|ZP_01791850.1| cell division protein [Haemophilus influenzae PittHH]
 gi|145270702|gb|EDK10635.1| cell division protein [Haemophilus influenzae PittHH]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 121/211 (57%), Gaps = 6/211 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           + ++   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 32  ERKNVTASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 91

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 92  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLACVGEDK 147

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 148 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 207

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 208 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 238


>gi|332160072|ref|YP_004296649.1| 23S rRNA methyltransferase J [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664302|gb|ADZ40946.1| 23S rRNA methyltransferase J [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862037|emb|CBX72203.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           enterocolitica W22703]
          Length = 209

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V  +I G      RV+A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 63  GGWSQYVVTQIGGKG----RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+ DMA    G   +D  ++M L E A     ++L  GG+FLVK FQG   ++ L  +
Sbjct: 119 QVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGNFLVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|197334812|ref|YP_002155234.1| ribosomal RNA large subunit methyltransferase J [Vibrio fischeri
           MJ11]
 gi|226705320|sp|B5FA72|RLME_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|197316302|gb|ACH65749.1| ribosomal RNA large subunit methyltransferase J [Vibrio fischeri
           MJ11]
          Length = 209

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           KN+    S R WL  H +D YV  AQ  G+R+R+ +K+ +I  K ++L+S   +VDLG++
Sbjct: 3   KNKVSASSGR-WLKEHFDDKYVLEAQKRGYRSRAIFKIEEIQNKDKLLKSGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ A    G   +  +V+A DIL M+ I GV F + DF +    + + + I  +  
Sbjct: 62  PGGWSQYAVEQVG---DEGQVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPDMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D  R M L E A     ++L   G F VK FQG   +  L  +
Sbjct: 119 DVVMSDMAPNMSGNLAVDQPRAMYLVELALDMCRQVLAPNGSFTVKVFQGEGFDQYLQEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SRA S E++++A G++
Sbjct: 179 RNMFKVVKIRKPDSSRARSREVYIVATGYK 208


>gi|229844055|ref|ZP_04464196.1| 23S rRNA methyltransferase J [Haemophilus influenzae 6P18H1]
 gi|229813049|gb|EEP48737.1| 23S rRNA methyltransferase J [Haemophilus influenzae 6P18H1]
          Length = 209

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMSVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|219870745|ref|YP_002475120.1| 23S rRNA methyltransferase J [Haemophilus parasuis SH0165]
 gi|254809554|sp|B8F4C0|RLME_HAEPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|219690949|gb|ACL32172.1| 23S rRNA methyltransferase J [Haemophilus parasuis SH0165]
          Length = 208

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKHGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPD 137
           G WSQ      G   +  RV+A DILDM PI+GV F + DF +      + + +G G  D
Sbjct: 62  GGWSQYVVTQIG---DKGRVIACDILDMNPIVGVDFLQGDFCEESVLNALLERVGEGKVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMSSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 SLFNVVKVRKPEASRDRSREVYIVATGYK 207


>gi|260582443|ref|ZP_05850234.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae NT127]
 gi|260094423|gb|EEW78320.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae NT127]
 gi|301170080|emb|CBW29684.1| 23S rRNA methyltransferase [Haemophilus influenzae 10810]
          Length = 209

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|156102665|ref|XP_001617025.1| ribosomal RNA large subunit methyltransferase J [Plasmodium vivax
           SaI-1]
 gi|148805899|gb|EDL47298.1| ribosomal RNA large subunit methyltransferase J, putative
           [Plasmodium vivax]
          Length = 266

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 18/222 (8%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KV N+    SS  W+ R I D YV +A+ + +R+R+AYKL++++ K+  L+ N+ I+D+G
Sbjct: 28  KVFNKKSSHSSL-WIQRQITDRYVLKAKNDNYRSRAAYKLIELDNKYMFLKKNKTILDIG 86

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD------------FLDLD 123
             PGSW QV    T + +N   ++ ID   M+P+  + F   +             +D+ 
Sbjct: 87  CYPGSWCQVILERTKNYSN--EIIGIDKKIMDPLPNIHFIHAEIGGAKDNPNDSNLVDVK 144

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
             E ++   G   D++LSD A P +G++  DH+ +  L    T F  + +N+GG ++VK 
Sbjct: 145 LREILQ---GKKVDIILSDAAVPCVGNKIDDHMNSCELTLGITNFMEQYINMGGTYVVKM 201

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           + G  T+++   LK  FQ V   KP ASR ES E++L+ + F
Sbjct: 202 YLGSQTDNLKTYLKTIFQFVNTTKPKASRRESREIYLVCRNF 243


>gi|16273244|ref|NP_439485.1| 23S rRNA methyltransferase J [Haemophilus influenzae Rd KW20]
 gi|260581320|ref|ZP_05849136.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae RdAW]
 gi|1169755|sp|P45162|RLME_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=Cell division protein ftsJ homolog;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|1574792|gb|AAC22978.1| cell division protein (ftsJ) [Haemophilus influenzae Rd KW20]
 gi|260091987|gb|EEW75934.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae RdAW]
          Length = 209

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFDVVKVRKPEASRGRSREVYIVATGYK 208


>gi|257387081|ref|YP_003176854.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomicrobium mukohataei
           DSM 12286]
 gi|257169388|gb|ACV47147.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomicrobium mukohataei
           DSM 12286]
          Length = 262

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 109/200 (54%), Gaps = 14/200 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D Y  RA+ EG+RARSAYKL Q++E   +L  NR ++DLG++PG W QVAA         
Sbjct: 5   DDYYNRAKQEGYRARSAYKLQQLDETAGLLGQNRTVLDLGAAPGGWMQVAAERVGTGGVV 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD-----LVLSDMAY 145
              +  R   ID LD +P   V+  + D  D  + E +R  +G   D     +V+SD+A 
Sbjct: 65  IGVDRQR---IDDLD-DPDPTVETIRGDMTDESTKEEVRDVVGAEGDERPVDVVISDLAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +DH R++ L   A   A ++L  GGDF VK F G    D+   ++  F+ V  
Sbjct: 121 NMTGQYDLDHARSIHLARQAFAVAEDVLATGGDFAVKVFDGQDLADLEADIESEFEYVRQ 180

Query: 206 VKPVASRAESVEMFLLAKGF 225
           V+P ASR  S E++L+AKGF
Sbjct: 181 VRPDASRDSSSELYLVAKGF 200


>gi|316972372|gb|EFV56050.1| putative serine protease pcp-1 [Trichinella spiralis]
          Length = 826

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 120/221 (54%), Gaps = 13/221 (5%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           +R    SS+ W+ RH+ DPYV R + E +R RSA+KLL+I+++ QIL+    ++DLGSSP
Sbjct: 605 HRRASSSSKQWIARHLRDPYVVRCRSENYRCRSAFKLLEIDDRFQILKPGMLVLDLGSSP 664

Query: 79  GSWSQVAARITGSNANNT----RVVAIDILDMEPILGVKFF-KFDFLDLDSWEFI----- 128
           GSWSQV +R   S    +    +V A+D   MEP+ GV +    D    DS + +     
Sbjct: 665 GSWSQVLSRRVNSVKLGSKPFGKVFAVDRQPMEPLDGVTWLGPLDLSVGDSVDVLLQRRR 724

Query: 129 RQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQ 185
           R   GG P D V+SDMA    G   +DH R + L   +   A+  L +     FL K +Q
Sbjct: 725 RLIDGGEPLDAVVSDMAPNATGCASVDHERIVQLGFLSLSIAIRCLKLSDRSFFLCKLWQ 784

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G         +K+HF     VKP ASR ES E++ LA+ F+
Sbjct: 785 GVEQWHFADEIKRHFGNFKIVKPTASRKESAELYFLARQFK 825


>gi|327400140|ref|YP_004340979.1| Ribosomal RNA large subunit methyltransferase E [Archaeoglobus
           veneficus SNP6]
 gi|327315648|gb|AEA46264.1| Ribosomal RNA large subunit methyltransferase E [Archaeoglobus
           veneficus SNP6]
          Length = 209

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 9/194 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y   A+ +G+R+R+A+KLLQ+N+  ++++   +++DLG+SPG WSQVA  +      
Sbjct: 11  QDYYYWEAKKKGYRSRAAFKLLQMNKTFKLIKKGSKVLDLGASPGGWSQVAVEL------ 64

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              VVA+DI  M PI GV F + D    ++ E I+ A+    D V+ D +    GH  ID
Sbjct: 65  GAEVVAVDINPMPPIEGVTFIQGDITKEETLEKIK-AVSREYDAVICDASPKITGHWSID 123

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ-KVIHVKPVASRA 213
           HL +M L  AA   A ++L  GG+F+VK FQG     +    K +F+ K +H  P ASR 
Sbjct: 124 HLISMDLARAAFNIARQVLKPGGNFVVKMFQGEEIQKVFNEFKPYFRFKKLH-SPPASRK 182

Query: 214 ESVEMFLLAKGFRK 227
            S E++ + K F+K
Sbjct: 183 RSAEIYFIGKRFKK 196


>gi|195498039|ref|XP_002096355.1| GE25629 [Drosophila yakuba]
 gi|194182456|gb|EDW96067.1| GE25629 [Drosophila yakuba]
          Length = 250

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 117/209 (55%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL+    ++D G++PGSW+QV
Sbjct: 37  SSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYEILRPGGTVLDCGAAPGSWTQV 96

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           A   T +N    R     V +ID+L    + G   F   DF    + + + +A+     +
Sbjct: 97  AVERTNANGKQKRASQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLNEALQHRKVN 156

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC     FAL M       +VK +  G    +   + 
Sbjct: 157 CVLSDMAPNATGVRMLDQESITNLCYEVVRFALAMSAPQAHLVVKVWDNGDVPKLERDML 216

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 217 RFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|291278455|ref|YP_003495290.1| cell division protein methyltransferase FtsJ [Deferribacter
           desulfuricans SSM1]
 gi|290753157|dbj|BAI79534.1| cell division protein methyltransferase FtsJ [Deferribacter
           desulfuricans SSM1]
          Length = 195

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 113/194 (58%), Gaps = 6/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y ++A+ EG+R+R+AYKL +IN K++I++   +++D G +PG WSQ A  I G     
Sbjct: 6   DGYYKKAKHEGFRSRAAYKLSEINNKYRIIKKGDKVLDAGCAPGGWSQAAISIVGDKG-- 63

Query: 96  TRVVAIDILDMEPILGVKFF--KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             VV IDILD+ PI    F+  K + LD ++ +     I    D V+SD A  T G++  
Sbjct: 64  -LVVGIDILDISPIEAKNFYFIKGNLLDKETLK-KSAEICKEYDTVISDAAPNTTGNKLT 121

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH+ ++ L      FA E+L   G+FL K F G    D +  L+  F+KV  ++P A+R 
Sbjct: 122 DHVNSLELVSTVFNFAKEVLKPEGNFLFKLFDGEDREDFIKQLRTSFKKVKIIRPDATRK 181

Query: 214 ESVEMFLLAKGFRK 227
            S E++++ +GF+K
Sbjct: 182 NSFEIYVVCQGFKK 195


>gi|322514378|ref|ZP_08067426.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           ureae ATCC 25976]
 gi|322119729|gb|EFX91773.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           ureae ATCC 25976]
          Length = 208

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMIVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFSTVKVRKPEASRDRSREVYIVATGYK 207


>gi|195482827|ref|XP_002086815.1| GE11211 [Drosophila yakuba]
 gi|194186605|gb|EDX00217.1| GE11211 [Drosophila yakuba]
          Length = 250

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 10/225 (4%)

Query: 12  GLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           G   K + R+ +G   SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL+  
Sbjct: 21  GKYAKQQPRNLKGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYEILRPG 80

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDL 122
             ++D G++PGSW+QVA   T +N    R     V +ID+L    + G   F   DF   
Sbjct: 81  GTVLDCGAAPGSWTQVAVERTNANGKQKRASQGAVFSIDLLHFHAVPGATIFGGMDFTTS 140

Query: 123 DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            + + + +A+     + VLSDMA    G R +D     +LC     FAL M       +V
Sbjct: 141 LAQKRLNEALQHRKVNCVLSDMAPNATGVRMLDQESITNLCYEVVRFALAMSAPQAHLVV 200

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +  G    +   + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 201 KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|123440806|ref|YP_001004797.1| 23S rRNA methyltransferase J [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|143462176|sp|A1JIW2|RLME_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122087767|emb|CAL10553.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 3   NKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAP 62

Query: 79  GSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           G WSQ V  +I G      RV+A D+L M+PI+GV F + DF D    + + + +G    
Sbjct: 63  GGWSQYVVTQIGGKG----RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  +
Sbjct: 119 QVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASRA S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRARSREVYIVATG 206


>gi|145629419|ref|ZP_01785217.1| cell division protein [Haemophilus influenzae 22.1-21]
 gi|145634955|ref|ZP_01790662.1| cell division protein [Haemophilus influenzae PittAA]
 gi|144978262|gb|EDJ88026.1| cell division protein [Haemophilus influenzae 22.1-21]
 gi|145267821|gb|EDK07818.1| cell division protein [Haemophilus influenzae PittAA]
 gi|309750887|gb|ADO80871.1| 23S rRNA U2552 ribose 2-O-methyltransferase, SAM-dependent
           [Haemophilus influenzae R2866]
          Length = 209

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|330447384|ref|ZP_08311033.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491575|dbj|GAA05530.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 209

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           GSS  WL  H +D YV  AQ  G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   GSSGRWLKEHFDDKYVLEAQKRGYRSRAFFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA + G   +  +V+A DIL M+ + GV F + DF +    E + + I  +  D+V+SD
Sbjct: 68  YAAEVVG---DEGQVIACDILPMDSLPGVSFLQGDFREEAVLEALLERIQPDMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+   D  R M L E A     ++L   G F VK FQG   +  L  ++  F+ 
Sbjct: 125 MAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFAVKVFQGEGFDQYLAEVRSMFKV 184

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S E++++A G++
Sbjct: 185 VKIRKPDSSRDRSREVYIVATGYK 208


>gi|84489178|ref|YP_447410.1| putative 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
 gi|121697907|sp|Q2NHD6|RLME_METST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84372497|gb|ABC56767.1| putative 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
          Length = 206

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  +H  + Y + A+ + +R+R++YKL Q+++K+ +L+ +  +VDLG++PG WSQV A  
Sbjct: 4   WKAKHDKEHYYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAET 63

Query: 89  TGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G      +++++D+  ++PI    +   K DF   ++ + I + I G  D+VLSD A  
Sbjct: 64  IGEEGKG-QIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDGKADVVLSDAAPK 122

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G + ID+ R   L  A       +L   G+ ++K FQG    +I+  LKK F+ V   
Sbjct: 123 LTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGEAYQEIIKNLKKKFRNVKTT 182

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S EM+++A+GFR
Sbjct: 183 KPNSSRKRSAEMYVIARGFR 202


>gi|21672644|ref|NP_660711.1| cell division protein FtsJ [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25091195|sp|Q8K9G7|RLME_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|21623279|gb|AAM67922.1| cell division protein FtsJ [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 206

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 4/199 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+ H  D YV+ A+ +  R+RS +KL +I++ +++ +    ++DLGSSPG WSQ 
Sbjct: 9   SSNRWLSEHFQDQYVKEAKKQKIRSRSWFKLEEIDKNNRLFKPGMNVLDLGSSPGGWSQY 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           AA+  G       ++A DIL M+ I GV FF+ DF +  +   I   +   N +L++SDM
Sbjct: 69  AAKKIGKKG---YILACDILPMKKIKGVDFFQGDFCNKKTLNLILTNLSNVNLNLIMSDM 125

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID  R + +C+     +  +L+  G  LVK+FQG   N+    +K  F K+
Sbjct: 126 APNITGCSSIDMPRIIEICKTVFTISDHVLSRNGVVLVKSFQGEGFNEFFAQMKNLFSKI 185

Query: 204 IHVKPVASRAESVEMFLLA 222
              KP  SR+ S E+F+LA
Sbjct: 186 KICKPKTSRSRSREIFMLA 204


>gi|317142990|ref|XP_001819235.2| ribosomal RNA large subunit methyltransferase J [Aspergillus oryzae
           RIB40]
          Length = 283

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 120/242 (49%), Gaps = 47/242 (19%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R + D + + A  +G ++R+A+KL+QI+ K++I ++ + +VDLG +PGSWSQV
Sbjct: 29  SSKRWQARQLKDHFTREATAQGLKSRAAFKLIQIDAKYRIFRNGQTVVDLGYAPGSWSQV 88

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG---------- 134
           A   TG N    RV+ +DI+  +P  GV   + +FLD     +++  +            
Sbjct: 89  AVSRTGPNG---RVLGVDIIPAQPPKGVFTIQGNFLDPSIQAYVQNFLHNPTRDQQHRPG 145

Query: 135 ----------------NP------------------DLVLSDMAYPTIGHRKIDHLRTMS 160
                           NP                  D+VLSDM   T G    DH  +M 
Sbjct: 146 ISPHVSLSHETSEDTKNPIHNCKEMEELCLTGKRTVDVVLSDMMMNTSGMSFRDHAGSMD 205

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LC AA  F+ E+L  GG F+ K +QG    D+   LK+ FQKV  +KP +SR ES E + 
Sbjct: 206 LCRAALQFSFEVLKAGGHFVCKFYQGAEDKDLEKQLKRLFQKVHRLKPESSRNESKEAYF 265

Query: 221 LA 222
           + 
Sbjct: 266 IG 267


>gi|21356387|ref|NP_650835.1| CG11447 [Drosophila melanogaster]
 gi|9910869|sp|Q9VDT6|RRMJ1_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG11447;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7300552|gb|AAF55704.1| CG11447 [Drosophila melanogaster]
 gi|17945992|gb|AAL49040.1| RE49934p [Drosophila melanogaster]
 gi|220957638|gb|ACL91362.1| CG11447-PA [synthetic construct]
 gi|220960190|gb|ACL92631.1| CG11447-PA [synthetic construct]
          Length = 250

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 10/225 (4%)

Query: 12  GLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           G   K + R+ +G   SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ IL+  
Sbjct: 21  GKYAKQQPRNLKGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPG 80

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDL 122
             +++ G++PGSW+QVA   T +N    R     V +ID+L    + G   F   DF   
Sbjct: 81  DTVLECGAAPGSWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSS 140

Query: 123 DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            + + +R+A+     + VLSDMA    G R +D     +LC     FAL M       +V
Sbjct: 141 LAQKRLREALQDRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV 200

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +  G    +   + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 201 KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|304396340|ref|ZP_07378221.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. aB]
 gi|304355849|gb|EFM20215.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. aB]
          Length = 209

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 117/208 (56%), Gaps = 6/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YV +A  +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSGRWLQEHFSDKYVLQAHKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           PG WSQ   +  G   N  RV+A DIL M+PI+GV F + DF +      + + +G    
Sbjct: 62  PGGWSQYVVQQIG---NKGRVIACDILPMDPIVGVDFLQGDFREESVINALLERVGDQKV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLREI 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +  F KV   KP ASR+ S E++++A G
Sbjct: 179 RSLFTKVKIRKPDASRSRSREVYIVATG 206


>gi|298674755|ref|YP_003726505.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanohalobium
           evestigatum Z-7303]
 gi|298287743|gb|ADI73709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanohalobium
           evestigatum Z-7303]
          Length = 255

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ EG+R+R+AYKLLQIN +  +++ N  IVDLG++PG W QVA +I+     N
Sbjct: 6   DSFYRLAKDEGYRSRAAYKLLQINNRFNVIEKNDTIVDLGAAPGGWLQVARKIS-----N 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            +VV ID+  ++ I GV+  K D   D    + ++       D+V+SD A    G+  +D
Sbjct: 61  NKVVGIDLQRIKSIEGVETVKGDMTSDRTVRKILKTIEDEGVDVVISDAAPNLSGNWNLD 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           H R++ L E+A  FA ++L   G+F+VK FQG   ND L  +K +F  V   +P ASR++
Sbjct: 121 HARSIDLVESALEFAKQVLKPSGNFVVKVFQGDMFNDFLEKVKNNFAYVKAHEPKASRSQ 180

Query: 215 SVEMFLLAKGF 225
           S E++++   F
Sbjct: 181 SAEIYVIGMDF 191


>gi|240949042|ref|ZP_04753394.1| 23S rRNA methyltransferase J [Actinobacillus minor NM305]
 gi|307261051|ref|ZP_07542733.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|240296555|gb|EER47178.1| 23S rRNA methyltransferase J [Actinobacillus minor NM305]
 gi|306869353|gb|EFN01148.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 208

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|170580731|ref|XP_001895384.1| ribosomal RNA methyltransferase [Brugia malayi]
 gi|158597684|gb|EDP35763.1| ribosomal RNA methyltransferase, putative [Brugia malayi]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 118/203 (58%), Gaps = 11/203 (5%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           +L++  +D + ++A+   +RARSAYKLL+INEK++I++    +VD+G++PGSW QV A I
Sbjct: 33  YLHKQWSDEFSKKAREHSYRARSAYKLLEINEKYKIIKPGMVVVDVGAAPGSWCQVVADI 92

Query: 89  TGSNA-NNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
              N  +N  ++ ID+  + PI GV F    D     + E I+Q + G + D+V+SDMA 
Sbjct: 93  VQPNVYDNALILGIDLQPILPISGVNFLDLSDITAQKTHENIKQILNGRSVDVVISDMAP 152

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEM------LNIGGDFLVKTFQGGTTNDILCLLKKH 199
              G   IDH R +SLC  AT   L +      L   G FL K + G    + +  LK+ 
Sbjct: 153 NPTGDGGIDHERILSLC--ATVLELSVRKSVIPLVKNGTFLCKIWDGPRREEFIERLKQD 210

Query: 200 FQKVIHVKPVASRAESVEMFLLA 222
           F+ V  VKP ASR  S E++LLA
Sbjct: 211 FRNVYTVKPKASRDHSAEIYLLA 233


>gi|307252148|ref|ZP_07534047.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860448|gb|EFM92462.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 208

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTAVKVRKPEASRDRSREVYIVATGYK 207


>gi|223041504|ref|ZP_03611707.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           minor 202]
 gi|223017762|gb|EEF16169.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           minor 202]
          Length = 208

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGTPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|194899901|ref|XP_001979496.1| GG23538 [Drosophila erecta]
 gi|190651199|gb|EDV48454.1| GG23538 [Drosophila erecta]
          Length = 250

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 116/209 (55%), Gaps = 7/209 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ IL+    ++D G++PGSW+QV
Sbjct: 37  SSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGGTVLDCGAAPGSWTQV 96

Query: 85  AARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-D 137
           A   T +N    R     V +ID+L    + G   F   DF    +   +++A+     +
Sbjct: 97  AVERTNANGKQERAAQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQMRLKEALQDRKVN 156

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
            VLSDMA    G R +D     +LC     FAL M       +VK +  G    +   + 
Sbjct: 157 CVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKLERDML 216

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + ++KV  +KP ASR +S E FLLA+ F+
Sbjct: 217 RFYEKVKRIKPRASRGDSAEHFLLARNFK 245


>gi|59711085|ref|YP_203861.1| 23S rRNA methyltransferase J [Vibrio fischeri ES114]
 gi|75354549|sp|Q5E7M3|RLME_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|59479186|gb|AAW84973.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
          Length = 209

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 5/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           KN+    S R WL  H +D YV  AQ  G+R+R+ +K+ +I  K ++L+    +VDLG++
Sbjct: 3   KNKVSASSGR-WLKEHFDDKYVLEAQKRGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-P 136
           PG WSQ A    G   +  +V+A DIL M+ I GV F + DF +    + + + I  +  
Sbjct: 62  PGGWSQYAVEQVG---DEGQVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPDMV 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D  R M L E A     ++L   G F VK FQG   +  L  +
Sbjct: 119 DVVMSDMAPNMSGNLAVDQPRAMYLVELALDMCRQVLAPNGSFTVKVFQGEGFDQYLQEV 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SRA S E++++A G++
Sbjct: 179 RNMFKVVKIRKPDSSRARSREVYIVATGYK 208


>gi|294495192|ref|YP_003541685.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanohalophilus mahii
           DSM 5219]
 gi|292666191|gb|ADE36040.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanohalophilus mahii
           DSM 5219]
          Length = 264

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + RH  D Y  RA+ EG+R+R+AYKL QIN+K  +++ +  +VDLG++PG W +VA  +T
Sbjct: 1   MARHRRDTYYWRAKAEGYRSRAAYKLQQINKKFNVIREDSDVVDLGAAPGGWLEVARELT 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
                  +VV +DIL ++P+  +   + D    ++   I++A+G +  D V+ D A    
Sbjct: 61  -----KRKVVGVDILRIKPMDRITIIRGDITREETVSQIKEAVGEDGADAVICDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +DH R+++L E+A   A  +L   G+F+VK FQG    + L  ++  F  V    P
Sbjct: 116 GNWNLDHARSIALAESALECATRILKPQGNFVVKVFQGDMFKEYLDKVRGEFTYVRAHSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR+ES E++++ K F
Sbjct: 176 EASRSESAEIYVVGKKF 192


>gi|319776273|ref|YP_004138761.1| 23S rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|329123415|ref|ZP_08251979.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           aegyptius ATCC 11116]
 gi|317450864|emb|CBY87088.1| 23S rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|327470997|gb|EGF16452.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           aegyptius ATCC 11116]
          Length = 209

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V ++I G      RV+A DIL+M PI+GV F + DF D +    +   +G + 
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMAPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  F  V   KP ASR  S E++++A G++
Sbjct: 178 TRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|238750119|ref|ZP_04611622.1| Ribosomal RNA large subunit methyltransferase J [Yersinia rohdei
           ATCC 43380]
 gi|238711663|gb|EEQ03878.1| Ribosomal RNA large subunit methyltransferase J [Yersinia rohdei
           ATCC 43380]
          Length = 209

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 115/198 (58%), Gaps = 6/198 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAAR 87
           WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++PG WSQ V  +
Sbjct: 13  WLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVTQ 72

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYP 146
           I G      R++A D+L M+PI+GV F + DF D    + + + +G     +V+SDMA  
Sbjct: 73  IGGKG----RIIACDLLPMDPIVGVDFLQGDFTDEQVLKALLERVGDKKVQVVMSDMAPN 128

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++  F KV   
Sbjct: 129 MSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIR 188

Query: 207 KPVASRAESVEMFLLAKG 224
           KP ASRA S E++++A G
Sbjct: 189 KPDASRARSREVYIVATG 206


>gi|260944280|ref|XP_002616438.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850087|gb|EEQ39551.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 301

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 105/193 (54%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN- 94
           D Y +RA+ EGWRARSA+KLLQINE+  I    RR+VDL ++PGSWSQV +R    N + 
Sbjct: 10  DLYYRRAKEEGWRARSAFKLLQINEQFNIFDGVRRVVDLCAAPGSWSQVLSRELNKNGDK 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
              ++VA+D+  M PI GV   + D     + + I    GG P D V SD A    G   
Sbjct: 70  KEAKIVAVDLQPMAPIDGVTCIQADITHPKTLQKILDLFGGEPADFVCSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  +A      +L  GG F+ K F+G   + +   L   F++VI  KP +SR
Sbjct: 130 LDEYIQAQLILSALQLTTCILKPGGTFVAKIFRGRDIDLLYSQLGYLFERVICAKPRSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++  G+
Sbjct: 190 GTSLEAFIVCLGY 202


>gi|294654333|ref|XP_456377.2| DEHA2A00902p [Debaryomyces hansenii CBS767]
 gi|199428798|emb|CAG84324.2| DEHA2A00902p [Debaryomyces hansenii]
          Length = 252

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 15/228 (6%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNR 69
           R L  + K++S   SS  WLNR   D + + ++L+ +R+R+A+KL++I++K+++  + ++
Sbjct: 17  RKLGSRWKSKSV--SSSRWLNRQKKDSHTKESKLQNFRSRAAFKLIEIDDKYRLFNRKSK 74

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
            IVDLG +PG+W+QVA   T S   N  ++ +D+++  P  G  F + + L   +   I+
Sbjct: 75  NIVDLGFAPGAWTQVAIERTKSLNINANIIGVDLINCSPPEGASFIQGNILSKQTHNNIK 134

Query: 130 QAIGGNP----------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +    N           DL++SDM   T G +  DH  +M LC+ A   A  +LN  G  
Sbjct: 135 EFFNNNKNHSECEEKPVDLIISDMMANTSGIKDNDHYASMELCDGALILASALLNKNGSM 194

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           ++K + G   + +   L+K F KV  +KP A R ES EM+ +  G RK
Sbjct: 195 VMKFYTGKEDSLLKEKLQKMFHKVFKMKPSACRDESREMYYI--GVRK 240


>gi|300709773|ref|YP_003735587.1| ribosomal RNA large subunit methyltransferase J [Halalkalicoccus
           jeotgali B3]
 gi|299123456|gb|ADJ13795.1| ribosomal RNA large subunit methyltransferase J [Halalkalicoccus
           jeotgali B3]
          Length = 251

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 5/191 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+ +G+R+R+AYKL Q++E   +L    R+VDLG++PG W QVA+   G+   
Sbjct: 4   KDEYYNKAKQQGYRSRAAYKLQQLDEMEDLLSHGDRVVDLGAAPGGWLQVASERVGTGT- 62

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              V+ +D+  ++ + GV+  K D  D  +   I + IG   D VLSDMA    G   +D
Sbjct: 63  ---VIGVDLQRIDSLEGVETIKGDMTDEGTRGEIIERIG-EADTVLSDMAPNMTGEYSLD 118

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R++ L   A   A E+L  GGD +VK F+G   + +   ++  F+ V    P ASR E
Sbjct: 119 QARSVHLARQAFETAREILTPGGDLVVKVFEGRDLDALRDDMEAEFEYVRTTSPAASREE 178

Query: 215 SVEMFLLAKGF 225
           S E++L+AKGF
Sbjct: 179 SSEVYLIAKGF 189


>gi|330805936|ref|XP_003290932.1| ribosomal RNA methyltransferase [Dictyostelium purpureum]
 gi|325078930|gb|EGC32556.1| ribosomal RNA methyltransferase [Dictyostelium purpureum]
          Length = 253

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 9/197 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNAN 94
           D Y ++A+ EGWRARSA+KL+QI+E++ I +  +R+VDL ++PGSWSQV + RI G  ++
Sbjct: 10  DIYYRKAKEEGWRARSAFKLIQIDEEYSIFEDVKRVVDLCAAPGSWSQVLSRRIYGDGSD 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIG 149
            N ++VA+DI +M P+ GV   K    D+  +E  +Q I    G   DL++SD A    G
Sbjct: 70  PNVKIVAVDIQEMAPLKGVVQIKG---DITKYETAKQIISHFDGSLADLIISDGAPDVTG 126

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  +A    +  L  GG F+ K F+G   + +   +K  F+ V  VKP 
Sbjct: 127 LHDIDFYGQSQLILSALNIVVHTLKPGGTFVAKMFKGDDMSLMFSQMKLFFEHVSFVKPK 186

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F+L K ++
Sbjct: 187 SSRDSSLENFVLCKNYQ 203


>gi|66814044|ref|XP_641201.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
 gi|74855831|sp|Q54VA8|RRMJ1_DICDI RecName: Full=rRNA methyltransferase 1 homolog; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 1
 gi|60469225|gb|EAL67220.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
          Length = 270

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 3/194 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNAN 94
           D Y ++A+ EGWRARSA+KL+QI+E++QI +  +R+VDL ++PGSWSQV + RI G   +
Sbjct: 10  DIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLSRRIYGDGKD 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            + ++VA+D+ +M P+ GV   K D    + S + I    G   DL++SD A    G   
Sbjct: 70  PDVKIVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLADLIISDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L  +A       L IGG F+ K F+G   + +   +K  F+ V  VKP +SR
Sbjct: 130 IDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSR 189

Query: 213 AESVEMFLLAKGFR 226
             S+E F+L + ++
Sbjct: 190 ESSLENFILCRNYQ 203


>gi|58697162|ref|ZP_00372584.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536531|gb|EAL59899.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 168

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 9/169 (5%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           ++ K ++ Q  ++I+DLG+SPG W QVA++  G+N     VVA+D+  M  I GV+F + 
Sbjct: 1   MDNKFKLFQEGQKIIDLGASPGGWLQVASQ-KGAN-----VVALDVKPMNAINGVEFIQC 54

Query: 118 DFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           D ++   +E +R+       D++LSDMA  + G + +DH+R M LCEAA  FA   L+ G
Sbjct: 55  DIIN--EFEILREKFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLSHG 112

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G F+VK FQG +  D    LKK F+ V + KP +SR+ES EM+L++ GF
Sbjct: 113 GTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSRSESTEMYLVSLGF 161


>gi|292611954|ref|XP_683228.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Danio
           rerio]
          Length = 259

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 120/210 (57%), Gaps = 7/210 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           + + WL R ++DP+V+ A  + +R RSA+KL+++++K+++L+    ++D G++PG+WSQV
Sbjct: 49  ADKRWLIRQLSDPFVKAAHEQNYRCRSAFKLIEMDDKYRLLKPGFTVIDCGAAPGAWSQV 108

Query: 85  AARITGSNANNT-----RVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIG-GNPD 137
           A +   S   +       V+ IDIL + P+ G +F    D     +   + + +     D
Sbjct: 109 AVQRVNSTGESVDLPKGSVIGIDILHIFPLDGAQFLTNHDITSPSTHTALERLLPEAGAD 168

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           ++LSDMA    G R++DH R +S+C +    A ++L  GG  + K + GG  + +   L 
Sbjct: 169 VILSDMAPNASGFRELDHERLVSMCLSMLDLADKVLRPGGSLICKYWDGGLAHMLQQRLF 228

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
             FQ V  VKP ASR ES E+F LA+  +K
Sbjct: 229 SAFQDVRTVKPRASRKESAELFFLARMLKK 258


>gi|294925458|ref|XP_002778927.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239887773|gb|EER10722.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 418

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+ +G+RARSA+KL+Q+ +K+  L++ R  VDL  +PG WSQVA +   +   N
Sbjct: 13  DRFYQLAKEQGYRARSAFKLIQLEKKYGFLKNARSCVDLCGAPGGWSQVAVKHMPA---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR-KI 153
           ++V+ +D++ ++PI GV   + D       +F+ + + G P D+VL+D A P +G     
Sbjct: 70  SKVICVDLMPIKPIKGVVTMQCDITTQKCRQFLLKELNGTPCDVVLNDGA-PNVGASWAK 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      LC  A   A +ML  GG F+ K F+    N +L + ++ F+KV   KP ASR 
Sbjct: 129 DAYNQAELCLYAVHLAADMLRKGGTFVTKVFRSSDYNSLLWVFQQLFEKVEATKPTASRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F+  KGF+
Sbjct: 189 VSAEIFVTCKGFK 201


>gi|255732766|ref|XP_002551306.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida tropicalis
           MYA-3404]
 gi|240131047|gb|EER30608.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida tropicalis
           MYA-3404]
          Length = 293

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 107/197 (54%), Gaps = 4/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           N+   D Y +RA+ EGWRARSA+KLLQ+NE+  + +   R+VDL ++PGSWSQV ++  G
Sbjct: 5   NKDKRDLYYRRAKEEGWRARSAFKLLQLNEEFNLFEDLTRVVDLCAAPGSWSQVLSQKLG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
            N+    +VA+D+  M PI GV   + D     + + I    GG P D V SD A    G
Sbjct: 65  PNST---IVAVDLQPMTPIDGVTTIQADITHPRTLQRILDCFGGEPADFVCSDGAPDVTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  +A      +L  GG F+ K F+G   + +   L   F KVI  KP 
Sbjct: 122 LHDLDEYIQAQLVLSALQLTTCLLKPGGKFVAKIFRGRDIDLLYSQLSYLFDKVICAKPR 181

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++  G++
Sbjct: 182 SSRGTSLEAFIVCLGYK 198


>gi|300123620|emb|CBK24892.2| Ribosomal RNA methyltransferase [Blastocystis hominis]
          Length = 259

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 111/202 (54%), Gaps = 2/202 (0%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+R + DPY   A+ EG+R+R+ YKL +I+E+  + +    +VD+G++PG WSQ 
Sbjct: 58  SSTIWLDRQLRDPYTIMAKEEGYRSRAVYKLKEIDERFHVFREGNIVVDVGAAPGGWSQY 117

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
           A    G    ++ V +ID+LD+EPI GV F   DF+   +   +   I     D+V+SD+
Sbjct: 118 AVERVGITIPHS-VFSIDLLDIEPITGVHFLCGDFMSESARCKLEDYIDNRRVDVVISDI 176

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   IDH + + +CE+   FA  +       ++K  QG      +  ++  FQ V
Sbjct: 177 APNFSGDHSIDHEKQIDMCESVIEFAKRVAKKDCSVVLKVLQGEEFPSFMKSVRSQFQSV 236

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
             +KP ASR +S E++ + K F
Sbjct: 237 NLIKPKASRKKSTEIYCVLKHF 258


>gi|294891100|ref|XP_002773420.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239878573|gb|EER05236.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 419

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+ +G+R RSA+KL+Q+ +K+  L++ R  VDL  +PG WSQVAA+   +   N
Sbjct: 13  DRFYQLAKEQGYRGRSAFKLIQLEKKYGFLKNARSCVDLCGAPGGWSQVAAKHMPA---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR-KI 153
           ++V+ +D++ ++PI GV   + D       +F+ + + G P D+VL+D A P +G     
Sbjct: 70  SKVICVDLMPIKPIKGVVTMQCDITTQKCRQFLLKELNGTPCDVVLNDGA-PNVGASWAK 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      LC  A   A +ML  GG F+ K F+    N +L + ++ F+KV   KP ASR 
Sbjct: 129 DAYNQAELCLYAVHLAADMLRKGGTFVTKVFRSSDYNSLLWVFQQLFEKVEATKPTASRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F+  KGF+
Sbjct: 189 VSAEIFVTCKGFK 201


>gi|145641635|ref|ZP_01797212.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae R3021]
 gi|145273682|gb|EDK13551.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 22.4-21]
          Length = 209

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 120/211 (56%), Gaps = 8/211 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           PG WSQ V ++I G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D    M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPCAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|225716246|gb|ACO13969.1| ribosomal RNA methyltransferase 2 [Esox lucius]
          Length = 242

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           W+ R +NDP+V+ A +  +R RSA+KLL+I++K+++L+    ++D G++PG+WSQVA + 
Sbjct: 35  WIVRQLNDPFVEAAHVHNYRCRSAFKLLEIDDKYKLLKPGFSVIDCGAAPGAWSQVAVQR 94

Query: 88  --ITGSNANNTR--VVAIDILDMEPILGVKFFK-FDFLD-LDSWEFIRQAIGGNPDLVLS 141
              TGS     R  VV ID+  + P+ G  F    D  D +   + ++   GG   ++LS
Sbjct: 95  VNSTGSYEEFPRGTVVGIDLQRIAPLDGAHFLSNCDITDPVTHAKLLKLLPGGQAHIILS 154

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G +++DH + +++  +    A ++L  GG  + K + G   + +   L   F+
Sbjct: 155 DMAPNASGFKEMDHEKLITMSLSLMDLADKVLRPGGSLICKYWDGALASVLQARLSAVFR 214

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
           +V  +KP ASR ES E+FLLA+ +R+
Sbjct: 215 EVRTIKPKASRKESSELFLLARSYRE 240


>gi|150400217|ref|YP_001323984.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus vannielii
           SB]
 gi|189040315|sp|A6USA0|RLME_METVS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150012920|gb|ABR55372.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus vannielii
           SB]
          Length = 259

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 5/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +   DPY   A+ + +R+R+ YKL Q+NEK  I++    +VDLG +PG W Q A  +
Sbjct: 8   WVLQRKKDPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQAARDM 67

Query: 89  TGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
           TG       +V ID+  ++P+    V   K D  D ++ + I+  +   PD+++ D +  
Sbjct: 68  TGEEG---FIVGIDLQQIKPLPYENVIAVKGDMTDEETLKKIQDILPEKPDVIICDASPN 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F K    
Sbjct: 125 ISGVWDVDHTRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFYKYVELVSEYFDKAFTT 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP ASR ES E++++AK +
Sbjct: 185 KPRASREESAEVYVIAKHY 203


>gi|94676772|ref|YP_589062.1| ribosomal RNA large subunit methyltransferase J [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|143459434|sp|Q1LSK2|RLME_BAUCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|94219922|gb|ABF14081.1| ribosomal RNA large subunit methyltransferase J [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 209

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 6/210 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL   + D YV +AQ +G R+R+ +KL QI +  ++ Q    I+DLG++
Sbjct: 4   KKRS--ASSNRWLQESLKDKYVVQAQKKGLRSRAWFKLDQIQKSDRLFQPYMTIIDLGAA 61

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNP 136
           PGSWSQ      G N +   V+A D+  M P+ GV F + DF +    + I Q +     
Sbjct: 62  PGSWSQYVTTQIGKNGH---VIACDLRYMSPLSGVDFIQGDFCNKQVLQAILQRLENKKA 118

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            ++LSDM+    G  +ID  ++M L E A      +L  GG F+VK FQG    + +C +
Sbjct: 119 QVILSDMSPNFSGKPEIDIPKSMYLVEKALKMCRYLLIPGGTFIVKVFQGDGFYEYICSM 178

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              F  V  +KP ASR+ S E++L+AKG +
Sbjct: 179 HALFNTVKIIKPDASRSRSREVYLIAKGHK 208


>gi|68472105|ref|XP_719848.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|68472340|ref|XP_719731.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|46441562|gb|EAL00858.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|46441688|gb|EAL00983.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|238881121|gb|EEQ44759.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida albicans WO-1]
          Length = 293

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/192 (38%), Positives = 106/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y +RA+ EGWRARSA+KLLQ+NE+  + +   R+VDL ++PGSWSQV ++  G ++  
Sbjct: 10  DLYYRRAKEEGWRARSAFKLLQLNEEFNLFKDITRVVDLCAAPGSWSQVLSQKLGPDST- 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             +VA+D+  M PI GV   + D     + + IR   GG P D V SD A    G   +D
Sbjct: 69  --IVAVDLQPMTPIDGVTTIQADITHPKTLQRIRDCFGGEPADFVCSDGAPDVTGLHDLD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  +A      +L  GG F+ K F+G   + +   L   F KVI  KP +SR  
Sbjct: 127 EYIQSQLILSALQLTTCLLKPGGSFVAKIFRGRDIDLLYSQLSYLFDKVICAKPRSSRGT 186

Query: 215 SVEMFLLAKGFR 226
           S+E F++  G++
Sbjct: 187 SLEAFIVCLGYK 198


>gi|167947654|ref|ZP_02534728.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 175

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 4/156 (2%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   R+VDLG++PG WSQVA  + G      RVVA+DIL+M+PI GV   + DF +   
Sbjct: 1   IKPGMRVVDLGAAPGGWSQVARDLVGEKG---RVVALDILEMDPIAGVTIIQGDFREEGP 57

Query: 125 WEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
              +R+ + G P DLV+SDMA    G   +D  R+M LCE A  FA E+L  GG F+VK 
Sbjct: 58  LAQLREQLAGEPVDLVISDMAPNVTGMVTVDQPRSMYLCELALDFAKEVLRPGGGFVVKV 117

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           FQG   +D L  +++ F +V+  KP +SRA+S E++
Sbjct: 118 FQGEGFDDYLREMRQAFGRVVSRKPRSSRAKSREIY 153


>gi|260950745|ref|XP_002619669.1| hypothetical protein CLUG_00829 [Clavispora lusitaniae ATCC 42720]
 gi|238847241|gb|EEQ36705.1| hypothetical protein CLUG_00829 [Clavispora lusitaniae ATCC 42720]
          Length = 298

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 6/204 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQ 83
           SS+ W+ R ++D + ++++ EG+R+R+AYKL++I+ K ++   N R IVDLG +PG+W+Q
Sbjct: 75  SSKRWVARQMDDAHTKKSKAEGYRSRAAYKLIEIDSKFRLFNKNTRNIVDLGFAPGAWTQ 134

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE----FIRQAIGGNP-DL 138
           VA     S     R++ +D+++  P  G  F + D     +      F        P DL
Sbjct: 135 VALARCKSKNITPRILGVDLINCSPPEGSSFLQGDIFSKKTHSEIVNFFDPEGHSQPLDL 194

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDM   T G +  DH  +M LC+     A  +L   G+ ++K + G     +   L+K
Sbjct: 195 VMSDMMANTSGIKDNDHFASMDLCDGVLILACRLLKKNGNLVMKFYTGKEERLLQNKLEK 254

Query: 199 HFQKVIHVKPVASRAESVEMFLLA 222
            F KV   KP A RAES EM+ +A
Sbjct: 255 VFHKVFMTKPAACRAESREMYFVA 278


>gi|225717054|gb|ACO14373.1| ribosomal RNA methyltransferase 2 [Esox lucius]
          Length = 242

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           W+ R +NDP+V+ A +  +R RSA+KLL+I++K+++L+    ++D G++PG+WSQVA + 
Sbjct: 35  WIVRQLNDPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFSVIDCGAAPGAWSQVAVQR 94

Query: 88  --ITGSNANNTR--VVAIDILDMEPILGVKFFK-FDFLD-LDSWEFIRQAIGGNPDLVLS 141
              TGS     R  VV ID+  + P+ G  F    D  D +   + ++   GG   ++LS
Sbjct: 95  VNSTGSYEEFPRGTVVGIDLQRIAPLDGAHFLSNCDITDPVTHAKLLKLLPGGQAHIILS 154

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G +++DH + +++  +    A ++L  GG  + K + G   + +   L   F+
Sbjct: 155 DMAPNASGFKEMDHEKLITMSLSLMDLADKVLRPGGSLICKYWDGALASVLQARLSAVFR 214

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
           +V  +KP ASR ES E+FLLA+ +R+
Sbjct: 215 EVRTIKPKASRKESSELFLLARSYRE 240


>gi|50424141|ref|XP_460657.1| DEHA2F06842p [Debaryomyces hansenii CBS767]
 gi|49656326|emb|CAG88989.1| DEHA2F06842p [Debaryomyces hansenii]
          Length = 301

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 3/194 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN- 94
           D Y +RA+ EGWRARSA+KLLQ+NE+ Q+ +  +R+VDL ++PGSWSQV +R    N   
Sbjct: 10  DLYYRRAKEEGWRARSAFKLLQLNEQFQLFKGVKRVVDLCAAPGSWSQVLSRELFENQKQ 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            + ++V++D+  M PI GV   + D     + + I +  GG P D V SD A    G   
Sbjct: 70  ADAKIVSVDLQPMTPIEGVTTLQADITHPKTLQKILEIFGGEPADFVCSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  +A      +L  GG F+ K F+G   + +   L   F++VI  KP +SR
Sbjct: 130 LDEYIQAQLILSALQLTTCILKPGGAFVAKIFRGRDIDLLYSQLSYLFERVICAKPRSSR 189

Query: 213 AESVEMFLLAKGFR 226
             S+E F++  G++
Sbjct: 190 GTSLEAFIVCLGYK 203


>gi|313673338|ref|YP_004051449.1| 23S rRNA um-2552 2'-o-methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940094|gb|ADR19286.1| 23S rRNA Um-2552 2'-O-methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 196

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 120/193 (62%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+LEG+R+R++YKLL++N+K+++ + N  ++D+G++PG WSQVA ++ G     
Sbjct: 6   DSFYKKAKLEGYRSRASYKLLELNQKYKLFRKNDAVLDVGAAPGGWSQVALQLLGEKG-- 63

Query: 96  TRVVAIDILDMEPILGVK--FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             VVA+DILD+ P+   +  F K D  D ++   I +    + D+V+SD+A  T G + +
Sbjct: 64  -IVVAVDILDINPLNDKRFHFIKGDIRDENTLSEITKY-ASSFDIVISDIAPNTTGQKFV 121

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH  +++L +    F ++ L   G FL K F G     ++  LK+ F+ +  ++P A+R 
Sbjct: 122 DHQNSINLIKTVMNFIMKTLKKNGIFLFKLFDGEERESLVKDLKELFEDIKIIRPDATRK 181

Query: 214 ESVEMFLLAKGFR 226
            S E++++ KG++
Sbjct: 182 NSFEIYIICKGYK 194


>gi|254572155|ref|XP_002493187.1| 2'-O-ribose methyltransferase, methylates the 2'-O-ribose of
           nucleotides [Pichia pastoris GS115]
 gi|238032985|emb|CAY71008.1| 2'-O-ribose methyltransferase, methylates the 2'-O-ribose of
           nucleotides [Pichia pastoris GS115]
 gi|328352798|emb|CCA39196.1| ribosomal RNA large subunit methyltransferase E [Pichia pastoris
           CBS 7435]
          Length = 311

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 110/197 (55%), Gaps = 6/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSNAN 94
           D Y +RA+ EGWRARSA+KLLQ+NE+  + +  RR+VDL ++PGSWSQV +R +    +N
Sbjct: 10  DLYYRRAKEEGWRARSAFKLLQLNEQFNLFKDVRRVVDLCAAPGSWSQVLSRELYEKQSN 69

Query: 95  NT----RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
           N+    ++VA+D+  M PI GV   + D     + E I +  GG P D V SD A    G
Sbjct: 70  NSETPAKIVAVDLQPMSPIDGVTTLQADITHPKTLEKILEIFGGEPADFVCSDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  +A      +L  GG F+ K F+G   + +   +   F+ V   KP 
Sbjct: 130 LHDLDEYIQSQLILSALQLTTCILKPGGSFVAKIFRGKDIDLLYSQMGFLFEHVTCAKPR 189

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ +G+R
Sbjct: 190 SSRGTSLESFIVCQGYR 206


>gi|91773171|ref|YP_565863.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcoides
           burtonii DSM 6242]
 gi|121689250|sp|Q12WR3|RLME_METBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91712186|gb|ABE52113.1| ribosomal RNA large subunit methyltransferase [Methanococcoides
           burtonii DSM 6242]
          Length = 267

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 115/195 (58%), Gaps = 6/195 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y  RA+ EG+R+R+AYKL QINEKH++++ +  IVDLG++PG W +VA +I+
Sbjct: 1   MARDRRDTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGWLEVAKKIS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
           G      ++V +D+  ++ I GV+  K D    ++ + I + +G G  D+V+ D A    
Sbjct: 61  GG-----KIVGVDLRRIKEIEGVETIKGDITSDETIKKIIELVGEGGADVVICDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +DH R++ L  +A   A ++L   G F+VK FQG    + +  +++ F       P
Sbjct: 116 GNWSLDHARSIDLTTSALECAKKILKPKGHFIVKVFQGDMFKEYMDKVRESFTYTRAFSP 175

Query: 209 VASRAESVEMFLLAK 223
            ASR ES E++++ K
Sbjct: 176 KASRPESAEIYVIGK 190


>gi|254362182|ref|ZP_04978298.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           PHL213]
 gi|261492457|ref|ZP_05989012.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494533|ref|ZP_05991018.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093751|gb|EDN74694.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           PHL213]
 gi|261309826|gb|EEY11044.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311873|gb|EEY13021.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 208

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-D 137
           G WSQ      GS     RV+A DILDM PI+GV F + DF +      + + +G +  +
Sbjct: 62  GGWSQYVVTQIGSKG---RVIACDILDMNPIVGVDFLQGDFREESVLNALLERVGEDKVN 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSFVVKVFQGEGFDEYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 SLFSVVKVRKPEASRDRSREVYIVATGYK 207


>gi|317154308|ref|YP_004122356.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944559|gb|ADU63610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 199

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 7/197 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ E + ARS YKL +++++  + +  + ++DLG++PGSW+Q A    G 
Sbjct: 2   KQYQDKYFKRAKKENYAARSVYKLKEMDKRFGLFKKGQTVLDLGAAPGSWTQYAGERVGP 61

Query: 92  NANNTRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
             +   V+A+DI D +      V F + D    DS E +       P DLV+SDMA  T 
Sbjct: 62  EGH---VLAVDIQDTKHTFAANVTFLQADVFS-DSPELLAAMEPLAPFDLVISDMAPKTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +  D   ++ LCE A   A + L  GG F VK F+ G T      L+ HF+K+ H KP
Sbjct: 118 GIKFADQANSLELCERAFEVAAKRLKRGGHFAVKIFESGETKAYTDSLRPHFEKIKHFKP 177

Query: 209 VASRAESVEMFLLAKGF 225
            +SR+ES E+F++A GF
Sbjct: 178 YSSRSESKEIFIVALGF 194


>gi|288559850|ref|YP_003423336.1| ribosomal RNA large subunit methyltransferase J RrmJ
           [Methanobrevibacter ruminantium M1]
 gi|288542560|gb|ADC46444.1| ribosomal RNA large subunit methyltransferase J RrmJ
           [Methanobrevibacter ruminantium M1]
          Length = 213

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 5/201 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W      DPY +RA+ E +R+R++YKL Q+++K++I++    +VDLG++PG WSQVA   
Sbjct: 5   WQVEKKKDPYYRRAKSEEYRSRASYKLKQLDKKYKIIKEGNTVVDLGAAPGGWSQVALEK 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFF--KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       VV +D+  ++P     F+  + DF      + I +   G   +++SD A  
Sbjct: 65  VGEEGI---VVGVDLNRIKPFPEKNFYGIRGDFTKEIVQDKIMELTNGKAKVLISDAAPS 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G + IDHL ++ L E     A  +L   G+ ++K FQG     +L  +K+ F+KV   
Sbjct: 122 LTGIKTIDHLNSVDLVETVIKIADNILETEGNMVIKAFQGPEYKRLLDEIKQDFRKVKST 181

Query: 207 KPVASRAESVEMFLLAKGFRK 227
           KP +SR  S EM+++  G+RK
Sbjct: 182 KPPSSRHRSKEMYIVGLGYRK 202


>gi|21228390|ref|NP_634312.1| methyltransferase [Methanosarcina mazei Go1]
 gi|74523704|sp|Q8PUP4|RLME_METMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|20906862|gb|AAM31984.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 268

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y  +A+ EG+R+R+++KL QINEKH +++    +VDLG++PG W QVA +++
Sbjct: 1   MARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
           G      +V+ +D+  ++PI GV+  + D     + + I + +G    D+VL D A    
Sbjct: 61  GG-----KVLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVGEKGADVVLCDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   DH R++ L  +A   A ++L   G+F VK FQG   ND L  ++ +F +V    P
Sbjct: 116 GNWSYDHARSIELATSALECAKKILKPKGNFAVKVFQGDMFNDYLDEVRNNFVRVKAYSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR++S E++++ K F
Sbjct: 176 QASRSQSAEIYIIGKKF 192


>gi|254565435|ref|XP_002489828.1| Mitochondrial 2' O-ribose methyltransferase, required for
           methylation of U(2791) in 21S rRNA [Pichia pastoris
           GS115]
 gi|238029624|emb|CAY67547.1| Mitochondrial 2' O-ribose methyltransferase, required for
           methylation of U(2791) in 21S rRNA [Pichia pastoris
           GS115]
 gi|328350243|emb|CCA36643.1| ribosomal RNA large subunit methyltransferase E [Pichia pastoris
           CBS 7435]
          Length = 298

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 125/274 (45%), Gaps = 67/274 (24%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           R ++ KVK +S   SSR WL R  +DP+ + A  +  ++R+A+KLLQI+EK  I +  + 
Sbjct: 16  RFVSLKVKGKS--SSSRKWLERQSSDPFTKEAHAKALKSRAAFKLLQIHEKFNIFRPGQN 73

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR- 129
           +VDLG +PG+WSQVAA    S  N   ++ IDIL  EP  GV   + + L   + E I+ 
Sbjct: 74  VVDLGFAPGAWSQVAADKVTSRGN---ILGIDILACEPPKGVSSMQANILSKTTHEMIKT 130

Query: 130 -----------------QAIGGNP-----------------------DLVLSDMAYP--- 146
                            + I   P                       D+V+SDM  P   
Sbjct: 131 HFYQLNMDKDLRKLQEIEPIADGPSYFQAEVDDNLEISNKQKQQFPVDVVMSDMCEPFFQ 190

Query: 147 ------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
                             T G    DHL ++ LC+AA   A+++L + G FL K FQG  
Sbjct: 191 SSGFGSAITNKPFHRMANTTGMAFKDHLLSIDLCDAALILAIDILKVNGTFLCKFFQGKE 250

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
              +   LKK F+ V   KP ASR ES E + + 
Sbjct: 251 DKLLEARLKKCFKVVQRYKPPASRKESKENYFIC 284


>gi|126328301|ref|XP_001374289.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 310

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 104/191 (54%), Gaps = 1/191 (0%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ EGWRARSA+KLLQ++E+ Q+    RR VDL ++PGSWSQV +R  G + + 
Sbjct: 10  DVYYRLAKEEGWRARSAFKLLQLDEEFQLFSGVRRAVDLCAAPGSWSQVLSRKLGEDESP 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             +VA+D+  M P+ GV   + D     + + I     G P DLV+ D A    G   ID
Sbjct: 70  ACIVAVDLQAMAPLPGVVQIQGDITKASTAQEIIGHFEGQPADLVVCDGAPDVTGLHDID 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A+ +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 130 EYIQAQLLLAALNIAIHVLKPGGSFVAKIFRGRDVTLLYSQLRIFFPDVVCAKPRSSRNS 189

Query: 215 SVEMFLLAKGF 225
           S+E F + +GF
Sbjct: 190 SIEAFAVCRGF 200


>gi|224070396|ref|XP_002195665.1| PREDICTED: FtsJ homolog 2 (E. coli) [Taeniopygia guttata]
          Length = 234

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
            S+  R L   VK     G+ + WL RH+ DP+V+ ++ + +R RSA+KLL+I++K ++L
Sbjct: 5   ASAGGRYLHTTVKFLRKTGAEQRWLERHLKDPFVKASKQQHYRCRSAFKLLEIDDKLRVL 64

Query: 66  QSNRRIVDLGSSPGSWSQVA-----ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDF 119
           +    ++D G++PG+WSQVA     A  T +      V+ +D+L + P+ G  F  + D 
Sbjct: 65  RPGFSVLDCGAAPGAWSQVAVQRVNALGTDAAVPTGFVLGVDLLRISPLEGAVFLSETDM 124

Query: 120 LDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
            +  +   I+  +  G  D++LSDMA    G +++DH + +SLC      +  +L   G 
Sbjct: 125 AEPSTLRAIQSLLPLGKADVILSDMAPNATGIKELDHQKLISLCLGLLDMSQSILKPKGT 184

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L K + G     +   LK+ FQ V  +KP ASR +S E + LA+ +R
Sbjct: 185 MLCKFWDGSEARLLQNRLKEQFQDVRTIKPQASRKDSAESYYLARLYR 232


>gi|20090152|ref|NP_616227.1| 23S RNA methyltransferase J [Methanosarcina acetivorans C2A]
 gi|74532956|sp|Q8TR92|RLME_METAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|19915136|gb|AAM04707.1| 23S RNA methyltransferase J [Methanosarcina acetivorans C2A]
          Length = 272

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y  +A+ EG+R+R+++KL QINEKH +++    +VDLG++PG W QVA +++
Sbjct: 1   MARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
           G      +V+ +D+  + PI GV+  + D     + + I +A+G    D+VL D A    
Sbjct: 61  GG-----KVLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVLCDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   DH R++ L  +A   A ++L   G+F+VK FQG   ND L  ++ +F  V    P
Sbjct: 116 GNWSYDHARSIELTTSALECAKKILKPKGNFVVKVFQGDMFNDYLEKVRDNFVHVKAYSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR++S E++++ K F
Sbjct: 176 QASRSQSAEIYVIGKKF 192


>gi|259089269|ref|NP_001158672.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
 gi|225705722|gb|ACO08707.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
          Length = 244

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 117/206 (56%), Gaps = 7/206 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR- 87
           W+ R +NDP+V+ A +  +R RSA+KLL+I++K+++L+    ++D G++PG+WSQ+A   
Sbjct: 35  WIVRQLNDPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFNVIDCGAAPGAWSQIAVHR 94

Query: 88  --ITGSNANNTR--VVAIDILDMEPILGVKFF-KFDFLD-LDSWEFIRQAIGGNPDLVLS 141
              TG+N    R  VV ID+L + P+ G  F    D  D +   + +    G    +++S
Sbjct: 95  VNSTGANGEFPRGTVVGIDLLRIAPLDGAHFLSNHDITDPVTHAKLLELLPGAQAHVIMS 154

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G +++DH + +++  +    A ++L  GG  + K + G   +     L   F+
Sbjct: 155 DMAPNASGFKEMDHEKLITMSLSLIDLAAKVLQTGGSLICKYWDGALAHQPQQKLSAVFR 214

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
            V  VKP ASR ES E+F LA+ +R+
Sbjct: 215 DVRTVKPKASRKESSELFFLARSYRE 240


>gi|222478870|ref|YP_002565107.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorubrum lacusprofundi
           ATCC 49239]
 gi|254809555|sp|B9LSX2|RLME_HALLT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|222451772|gb|ACM56037.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 269

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +++ +G+RARSAYKL QI+E+  + +    +VDLG++PG W QVAA   G +   
Sbjct: 5   DEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEEVGESGT- 63

Query: 96  TRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK 152
             VV +D+  ++ +    V+  + D  +  +  ++R+AIG    D+V+SDMA    G   
Sbjct: 64  --VVGVDLQRIDDLDDHDVETIRGDMTEERTRHYLREAIGERGADVVISDMAPNMTGEYA 121

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH R++ L   A   A E+L  GGDF+VK FQG   +     ++  F+ +  V P ASR
Sbjct: 122 LDHARSVHLARQAFDVAEELLAPGGDFVVKVFQGEDLDAFREDVRAEFEYLRTVSPPASR 181

Query: 213 AESVEMFLLAKGF 225
             S E++L+AKG 
Sbjct: 182 DSSSEVYLVAKGL 194


>gi|312076799|ref|XP_003141023.1| ribosomal RNA methyltransferase [Loa loa]
 gi|307763813|gb|EFO23047.1| ribosomal RNA methyltransferase [Loa loa]
          Length = 244

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 13/207 (6%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR------RIVDLGSSPGSWS 82
           +L +  +D + ++A+   +RARSAYKLL+INEK++I++          +VD+G++PGSW 
Sbjct: 33  YLRKQCSDEFSRKAREHSYRARSAYKLLEINEKYKIIEPGEFYFKCMVVVDVGAAPGSWC 92

Query: 83  QVAARITGSNA-NNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGG-NPDLV 139
           QV A I   N   +  V+ ID+  + P+ GV F    D     + E I+Q + G + D+V
Sbjct: 93  QVVADIVQPNVYGDAFVLGIDLQPIMPVSGVNFLDLSDITAQKTHENIKQLLNGRSVDVV 152

Query: 140 LSDMAYPTIGHRKIDHLRTMSLC----EAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           +SDMA    G R IDH R +SLC    E +   ++  L   G FL K + G    + +  
Sbjct: 153 ISDMAPNPTGDRGIDHERILSLCGIVLELSVKKSVIPLVRNGTFLCKIWDGPRREEFIER 212

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLA 222
           LK+ F KV  VKP ASR  S E++LLA
Sbjct: 213 LKREFGKVYTVKPKASRDHSAEIYLLA 239


>gi|225711000|gb|ACO11346.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
          Length = 251

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 7/204 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++A+ EG+RARSAYKLL++++K +IL+ N  +++ G +PG+W+QV 
Sbjct: 49  SSSWIRRQAKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVL 108

Query: 86  ARITGSNANNTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGGNP--DLVLSD 142
                S      +++ D+LD EP+   +     DF    + + I   +G +   DLVLSD
Sbjct: 109 TERVSSGM----IISCDLLDYEPVGHAIILPNSDFTSPSTQDTILSHLGKSSGFDLVLSD 164

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G  +++H + ++L   AT FAL     G  FL K + G      L  L++ +  
Sbjct: 165 MAPNASGMAELNHGQILNLSYEATKFALRHSKPGAAFLTKLWNGNGLEGYLTDLRRFYNN 224

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V  VKP +SR ES E+F+ A  F+
Sbjct: 225 VQVVKPKSSRKESAELFIYASKFK 248


>gi|260824435|ref|XP_002607173.1| hypothetical protein BRAFLDRAFT_68032 [Branchiostoma floridae]
 gi|229292519|gb|EEN63183.1| hypothetical protein BRAFLDRAFT_68032 [Branchiostoma floridae]
          Length = 207

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 4/200 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R ++DPYVQ+A ++ +R RSAYKL+++++K + L+    +VD G+ PGSW+QVA     +
Sbjct: 3   RQLSDPYVQKAAVDNFRCRSAYKLIEMDDKFRFLKPGLAVVDCGACPGSWTQVAVNRVNA 62

Query: 92  NANNTR--VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPT 147
                R  VV +D+  M PI G K     DF   ++ E IR+ +  G  D+VLSDMA   
Sbjct: 63  AEGFPRGMVVGVDLQHMSPIPGAKLLSNCDFTLEETQEHIRKHLPNGKADVVLSDMAPNA 122

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +DH + +SL  +A  F+  +L   G F+ K + G        ++   F+ V  VK
Sbjct: 123 TGLASLDHDQIVSLQLSAFKFSKVVLREDGVFVCKLWDGSHCKKFQSVVGDVFKFVKVVK 182

Query: 208 PVASRAESVEMFLLAKGFRK 227
           P +SR+ S E+F+ A+G++K
Sbjct: 183 PQSSRSNSAELFVFARGYKK 202


>gi|150950985|ref|XP_001387267.2| tRNA methyltransferase [Scheffersomyces stipitis CBS 6054]
 gi|149388260|gb|EAZ63244.2| tRNA methyltransferase [Pichia stipitis CBS 6054]
          Length = 301

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--ITGSNA 93
           D Y +RA+ +GWRARSA+KLLQ++++ QIL   +R+VDL ++PGSWSQV +R      N 
Sbjct: 10  DIYYRRAKEQGWRARSAFKLLQLHDEFQILHGLKRVVDLCAAPGSWSQVLSRELYQKQNQ 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            + ++VA+D+  M PI GV   + D     +   I    GG P D V SD A    G   
Sbjct: 70  PDAKIVAVDLQPMTPIDGVTCIQADITHPKTLHKILDIFGGEPADFVCSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  +A      +L  GG F+ K F+G   + +   L   F+KVI  KP +SR
Sbjct: 130 LDEYIQAQLILSALQLTTCILKPGGTFVAKIFRGRDIDLLYSQLSYLFEKVICAKPRSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++  G+
Sbjct: 190 GTSLEAFIVCIGY 202


>gi|281208196|gb|EFA82374.1| rRNA methyltransferase [Polysphondylium pallidum PN500]
          Length = 274

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 3/194 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNAN 94
           D Y ++A+ EGWRARSA+KLLQI++ H I    +R+VDL ++PGSWSQV + RI G  ++
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDDDHNIFGGVKRVVDLCAAPGSWSQVLSRRIYGDGSD 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            + ++VA+DI +M P+ GV   K D   L +  + I    G   DLV+SD A    G   
Sbjct: 70  PDVKIVAVDIQEMAPLKGVLQIKGDITKLTTVNQIISHFDGSLADLVVSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L  +A      +L  GG F+ K F+G     +   +K  F+KV  VKP +SR
Sbjct: 130 IDFYGQAQLILSAFNITTHVLCRGGTFVAKMFKGNDMTLMYNQMKLFFEKVSFVKPKSSR 189

Query: 213 AESVEMFLLAKGFR 226
             S+E F+L + ++
Sbjct: 190 DSSLENFILCQNYQ 203


>gi|256809981|ref|YP_003127350.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           fervens AG86]
 gi|256793181|gb|ACV23850.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           fervens AG86]
          Length = 246

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +   D Y + A+   +R+R+++KL+Q+NEK  +++  R ++DLG +PG W QVA  I
Sbjct: 8   WVLQRKRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGRIVLDLGCAPGGWMQVAREI 67

Query: 89  TGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNP---DLVLSDM 143
            G       V+ ID+  ++P     V+  K DF   ++   IR+ I       D+V+SD 
Sbjct: 68  VGDKGF---VIGIDLQPVKPFEYDNVRAIKGDFTLEENLNKIRELIPNEEKKVDVVISDA 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G+  +DH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F+KV
Sbjct: 125 SPNISGYWDVDHARSIDLVTTALQIATEMLKERGNFVAKVFYGNMIDDYVKLVKKYFEKV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP ASR ES E++++AK +
Sbjct: 185 YITKPQASRKESAEVYVIAKRY 206


>gi|328770294|gb|EGF80336.1| hypothetical protein BATDEDRAFT_11420 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 221

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 16/215 (7%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W NR  +DP+V+       R+RSA+KL ++  K+  ++  + ++DLG++PG W+QV
Sbjct: 3   SSGQWFNRQASDPFVKNRIKWNLRSRSAFKLKELQSKYNFMKPGQVVLDLGAAPGGWTQV 62

Query: 85  AARITG---SNANNTRVVAIDILDMEPILGVKFFKFD---------FLDLDSWEFIRQAI 132
           A        + + + RV+A+D+L +EPI G +    D            L ++ +  Q  
Sbjct: 63  ALDAVWPDRAQSMDGRVIAVDLLPIEPIDGAEILLGDVHEDAVLQQIYTLAAYPY--QPE 120

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE--MLNIGGDFLVKTFQGGTTN 190
           G   D+VLSDMA+   GHR  D  R  +LCE A   A    +L  GG+FL K  +G    
Sbjct: 121 GPVVDVVLSDMAHSFTGHRSTDAARVQNLCEFALSVASHPWLLKPGGNFLCKYLRGDGDQ 180

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           ++  L +  FQ+VI  KP ASR  S E + L  GF
Sbjct: 181 ELKKLCQSRFQQVIVTKPKASRQGSAEAYFLCLGF 215


>gi|15616987|ref|NP_240200.1| cell division protein FtsJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387078|sp|P57463|RLME_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|25311069|pir||F84974 cell division protein ftsJ [imported] - Buchnera sp. (strain APS)
 gi|10039052|dbj|BAB13086.1| cell division protein ftsJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|311087278|gb|ADP67358.1| cell division protein FtsJ [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 206

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 9/211 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + QK K+RS +     WL  H  D YV+ A+    R+R+ +KL Q+++ ++I +    ++
Sbjct: 2   IVQKKKHRSNR-----WLLEHFQDQYVKAAKKNNIRSRAWFKLEQLDKNNKIFKIGMNVI 56

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ A+   G      R++A DIL + PI GV  F+ DF +  +   +    
Sbjct: 57  DLGAAPGSWSQYASNRIGKKG---RIIACDILPIRPITGVDIFQGDFRNKKTLNLMLNTF 113

Query: 133 GG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                 LV+SDMA    G+  ID  R + LC+ A   +  +L+  G FL+K+FQG   N+
Sbjct: 114 SNITFHLVMSDMAPNITGNFSIDMPRIIELCKLALKISEHVLSKNGIFLLKSFQGEGFNE 173

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   +K  F+K+   KP  SR  S E+F+LA
Sbjct: 174 LYKEIKMLFKKIKICKPKTSRTRSREIFILA 204


>gi|313124823|ref|YP_004035087.1| 23S rRNA um-2552 2'-o-methyltransferase [Halogeometricum
           borinquense DSM 11551]
 gi|312291188|gb|ADQ65648.1| 23S rRNA Um-2552 2'-O-methyltransferase [Halogeometricum
           borinquense DSM 11551]
          Length = 256

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 108/191 (56%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ EG+R RSAYKL Q++E+  +      +VDLG++PG W QVAA      +++
Sbjct: 4   DHYYNKAKQEGYRTRSAYKLKQLDEETGLFGPGNTVVDLGAAPGGWLQVAAEEV---SDH 60

Query: 96  TRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRK 152
             VV +D+  +  I    V+  + D  D ++ E +R+ IG    D+V+SDMA    G   
Sbjct: 61  GTVVGVDLQRIRDIDADNVETIRGDMTDEETKESLRERIGEEGADVVISDMAPNMTGEYS 120

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH R++ L   A   AL++L  GGDF VK F G    D    +++ FQ V  ++P ASR
Sbjct: 121 LDHARSIHLARQAFEVALDLLPAGGDFAVKVFDGQDLADFRADVEEEFQYVRSIRPDASR 180

Query: 213 AESVEMFLLAK 223
            ES E +L+ K
Sbjct: 181 DESSEQYLVGK 191


>gi|296828096|ref|XP_002851274.1| ribosomal RNA methyltransferase MRM2 [Arthroderma otae CBS 113480]
 gi|238838828|gb|EEQ28490.1| ribosomal RNA methyltransferase MRM2 [Arthroderma otae CBS 113480]
          Length = 292

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 64/259 (24%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R   D Y + A ++G ++R+A+KLLQIN+++++ +S + +VDLG +PGSWSQV
Sbjct: 26  SSKQWQARQGKDTYTKEAGMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQV 85

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR--------------- 129
           A  +T       RVV +DI+  +P  GV   + +FL     E+++               
Sbjct: 86  AFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPHRGRPRSQL 142

Query: 130 ------QAIGGNPD----------------------------------------LVLSDM 143
                 +    NPD                                        +VLSDM
Sbjct: 143 STFTDQEETAPNPDPENDEGYIDLERSSSAHINKEERGEESNQPLRNARVGSVDVVLSDM 202

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G +  DHL +M LC+AA  FA  +L  GG F+ K +QG    +    LK+ F +V
Sbjct: 203 LMNTSGTKSRDHLGSMELCKAALDFASVVLKQGGHFVCKYYQGSGEKEFENELKRLFYRV 262

Query: 204 IHVKPVASRAESVEMFLLA 222
              KP +SR+ES E + + 
Sbjct: 263 YREKPDSSRSESKEAYFIG 281


>gi|325958289|ref|YP_004289755.1| Ribosomal RNA large subunit methyltransferase E [Methanobacterium
           sp. AL-21]
 gi|325329721|gb|ADZ08783.1| Ribosomal RNA large subunit methyltransferase E [Methanobacterium
           sp. AL-21]
          Length = 204

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 119/203 (58%), Gaps = 5/203 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W +    + Y + A+ + +R+R++YKL Q+N++ +++++  ++VDLG++PG WSQ+A 
Sbjct: 3   KKWNSERKTEHYYKMAKKQNYRSRASYKLQQLNKRFKVIKAADKVVDLGAAPGGWSQIAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       VV +D+  + P+    F   + DF   ++ + ++  I G   +V+SD A
Sbjct: 63  EAVGEEGT---VVGVDLEWIRPLDEENFHTVRGDFTKDETLKEVKDLINGTAQVVISDAA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + ID +R+  L + A      +L  GG+F++K FQG   ++I+  +K+ F+ V 
Sbjct: 120 PKLTGIKDIDTIRSTDLADNALTVCDHVLMQGGNFVLKVFQGVEYDNIIKNIKERFKVVK 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP +SR  SVEM+++AKGFR+
Sbjct: 180 TTKPPSSRKASVEMYVVAKGFRR 202


>gi|284163460|ref|YP_003401739.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haloterrigena turkmenica
           DSM 5511]
 gi|284013115|gb|ADB59066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haloterrigena turkmenica
           DSM 5511]
          Length = 261

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 9/195 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ +G+R+R+AYKL Q+++   ++  +  +VDLG++PG W QVAA   G     
Sbjct: 5   DDYYNRAKQQGYRSRAAYKLKQLDDLENVISGHDTVVDLGAAPGGWLQVAAEKVGPQGT- 63

Query: 96  TRVVAID---ILDMEPIL---GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             V+ +D   I D+E       V+  + D  +  + + +  A GG+ D+V+SDMA    G
Sbjct: 64  --VIGVDLQRIKDLEDETLNERVETIRGDMTEEKTRDRVTDAAGGSVDVVVSDMAPNMSG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D  R++ L   A   ALE+L  GG+F+VK F+G   +D+   +   FQ V    P 
Sbjct: 122 EYSLDQARSLYLARQAFETALELLESGGNFVVKVFEGPDVDDLRADIDDEFQYVRATAPK 181

Query: 210 ASRAESVEMFLLAKG 224
           ASR ES E++L+ KG
Sbjct: 182 ASREESSEIYLIGKG 196


>gi|323698443|ref|ZP_08110355.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp. ND132]
 gi|323458375|gb|EGB14240.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           desulfuricans ND132]
          Length = 199

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 112/198 (56%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ E + ARS YKL +++++ QI +  + ++DLG++PGSWSQ A    G 
Sbjct: 2   KQYQDKYFKRAKKENYAARSVYKLKEMDKRFQIFKKGQTVLDLGAAPGSWSQFAGERVGP 61

Query: 92  NANNTRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
             +   V+ +D+   +      + F + D    DS E +       P D+++SDMA  T 
Sbjct: 62  EGH---VLGVDLQTTKHSFAGNITFLQADVFS-DSPELLAAVEPLAPFDVIISDMAPKTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +  D   ++ LCE A   AL+ L  GG F VK F+GG  ND    ++ +F ++ + KP
Sbjct: 118 GIKFADQANSLELCERAFEVALKYLKKGGSFAVKIFEGGEINDYRDAIRPYFARIKNFKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            +SR+ES E+F++A GF+
Sbjct: 178 YSSRSESKEIFIVALGFK 195


>gi|261403094|ref|YP_003247318.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           vulcanius M7]
 gi|261370087|gb|ACX72836.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           vulcanius M7]
          Length = 248

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ W  +   D Y + A+   +R+R+++KL+Q+NEK  +++  + I+DLG +PG W QVA
Sbjct: 5   SKRWYLQRKRDFYYKLAKKLQYRSRASFKLMQLNEKFNVIKPRKIILDLGCAPGGWMQVA 64

Query: 86  ARITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNP---DLVL 140
             I G +     V+ +D+  ++P     V   K DF   ++   IR+ I       D+V+
Sbjct: 65  REIVGDDGF---VIGVDLQPVKPFGYDNVVAIKGDFTSEETLNKIRELIPNEEKKVDVVI 121

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD +    G+  +DH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F
Sbjct: 122 SDASPNISGYWDVDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVKLVKKYF 181

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           +KV   KP ASR ES E++++AK +
Sbjct: 182 EKVYITKPQASRKESAEVYVIAKRY 206


>gi|320581605|gb|EFW95825.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Pichia angusta DL-1]
          Length = 299

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 2/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSNAN 94
           D Y ++A+ EGWRARSAYKLLQ+NE+  +  +  R+VDL ++PGSWSQV +R I  +  +
Sbjct: 10  DVYYRKAKEEGWRARSAYKLLQLNEQFGLFNNIHRVVDLCAAPGSWSQVLSREIFKNERS 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKI 153
           + ++VA+D+  M PI  V   + D  D  + + I    GG   D V SD A    G   +
Sbjct: 70  DAQIVAVDLQPMAPIDDVVTLQADITDPRTLDKILHIFGGEKADFVCSDGAPDVTGLHDL 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A  +L  GG F+ K F+G   + +   L   F+KV+  KP ASR 
Sbjct: 130 DEYIQAQLVLCALRLATCLLKEGGTFVAKIFRGRDIDLLYSQLGFLFEKVVCAKPRASRG 189

Query: 214 ESVEMFLLAKGFR 226
            S+E F++  G+R
Sbjct: 190 TSLESFIVCIGYR 202


>gi|123977189|ref|XP_001330767.1| cell division protein [Trichomonas vaginalis G3]
 gi|121912578|gb|EAY17398.1| cell division protein, putative [Trichomonas vaginalis G3]
          Length = 244

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 2/192 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ EGWRARSA+KL+Q+ +  ++  +  R+VDL ++PGSWSQV A+   S   N
Sbjct: 9   DTFYRAAKQEGWRARSAFKLIQVADHFRLFDNVTRVVDLCAAPGSWSQVCAQKL-SKVPN 67

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKID 154
           + +VA+D+  M PI GV   + D    ++ + +  A+ G   DLV+SD A    G   +D
Sbjct: 68  SAIVAVDLQPMAPIPGVIQIRGDITSKETAQQVIDAMNGKKADLVISDGAPDVTGLHDLD 127

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  +A   A  ML  GG F+ K F G    D+   L   F+ V  +KP ASR  
Sbjct: 128 EYMQSQLVFSAFNIACFMLREGGTFMAKIFTGRDIQDLYSSLSPFFETVTAMKPRASRVA 187

Query: 215 SVEMFLLAKGFR 226
           S+E F++ +GFR
Sbjct: 188 SLESFVVCQGFR 199


>gi|148702026|gb|EDL33973.1| Ftsj homolog 1 (E. coli), isoform CRA_b [Mus musculus]
          Length = 344

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 111/205 (54%), Gaps = 2/205 (0%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
           CQ +     ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSW
Sbjct: 18  CQQTEMGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSW 77

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV ++  G   +  +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+
Sbjct: 78  SQVLSQKVGGQGSG-QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVV 136

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA   A  +L +GG F+ K F+G     +   L+  F
Sbjct: 137 CDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFF 196

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V+  KP +SR  S+E F + +G+
Sbjct: 197 SSVLCAKPKSSRNSSIEAFAVCQGY 221


>gi|190345428|gb|EDK37311.2| hypothetical protein PGUG_01409 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 293

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 3/194 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--ITGSNA 93
           D Y +RA+ EGWRARSA+KLLQ++E+  +    +R+VDL ++PGSWSQV +R     S  
Sbjct: 10  DLYYRRAKEEGWRARSAFKLLQLDEEFGLFSGVKRVVDLCAAPGSWSQVLSREIYKNSKG 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            + ++VA+D+  M PI GV   + D     + + I    GG P D V SD A    G   
Sbjct: 70  EDAKIVAVDLQPMTPIDGVITLQADITHPKTLQRILDIFGGEPADFVCSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L   A      +L  GG F+ K F+G   + +   L   F++V+  KP ASR
Sbjct: 130 LDEYIQAQLVLCALQLTTCVLKEGGTFVAKIFRGRDIDLLYSQLGHLFERVVCAKPRASR 189

Query: 213 AESVEMFLLAKGFR 226
             S+E F++  G++
Sbjct: 190 GTSLEAFIVCIGYK 203


>gi|261187463|ref|XP_002620155.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis SLH14081]
 gi|239594205|gb|EEQ76786.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis SLH14081]
 gi|327356488|gb|EGE85345.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 309

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 121/261 (46%), Gaps = 67/261 (25%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  R   D Y + A ++G ++R+A+KL+QINEKH+I +  + +VDLG +PGSWSQVA  +
Sbjct: 41  WQARQAKDKYSREAAVKGLKSRAAFKLIQINEKHKIFKPGQSVVDLGYAPGSWSQVAVDL 100

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLD--LDSW--EFIR--------------- 129
           T  N    RVV +DI+  +P  GV   + +FL   + ++  EF+R               
Sbjct: 101 TQPNG---RVVGVDIIPAQPPKGVSTIQGNFLSPQIQAYVQEFLRNPNRGRAQSLNHFDD 157

Query: 130 -------------------------------QAIGGNPDL------------VLSDMAYP 146
                                          Q  GGN D+            VLSDM   
Sbjct: 158 ADPRSQPQADSEVEETEGYIDRERSASLHIAQVDGGNEDIPDIAVADKTVDVVLSDMMMN 217

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G    DH  +M LC AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   
Sbjct: 218 TSGMSFRDHAGSMDLCRAALEFSFNVLKTGGHFVCKFYQGAEDKALERQLKELFQNVHRE 277

Query: 207 KPVASRAESVEMFLLAKGFRK 227
           KP +SR+ES E + +  G R+
Sbjct: 278 KPESSRSESKEAYFI--GLRR 296


>gi|119390695|pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
           In Complex With S-Adenosylmethionine
 gi|119390696|pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
           In Complex With S-Adenosylmethionine
          Length = 196

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 7/186 (3%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAI 101
           +R+RSA+KLL++NE+HQIL+   R++D G++PG+WSQVA +   +   +       V+ +
Sbjct: 2   YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61

Query: 102 DILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTM 159
           D+L + P+ G  F    D  D  + + I + + G   D++LSDMA    G R +DH R +
Sbjct: 62  DLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLI 121

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           SLC        ++L  GG FL KT+ G  +  +   L + FQ V  +KP ASR ES E++
Sbjct: 122 SLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVY 181

Query: 220 LLAKGF 225
            LA  +
Sbjct: 182 FLATQY 187


>gi|171059499|ref|YP_001791848.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Leptothrix cholodnii
           SP-6]
 gi|226703309|sp|B1XXG3|RLME_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|170776944|gb|ACB35083.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Leptothrix cholodnii
           SP-6]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 11/219 (5%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ W N HI+D YV+ A  EG+R+R+AYK+ +I+E   +++  + +VDLG+ P
Sbjct: 4   NTKSKKVNKAWFNDHIHDTYVKLAHKEGYRSRAAYKIKEIDETCGLIRPGQVVVDLGAVP 63

Query: 79  GSWSQVAARITGSNAN----------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           G+WSQ   R                 N R++A+D+L  EP+ GV F + DF +      +
Sbjct: 64  GAWSQYVRRRFAPREAGVGGAAAGELNGRIIALDLLPFEPLEGVAFLQGDFCEEAVLAQL 123

Query: 129 RQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
              + G   D+VLSDMA    G    D  R  +L E A  FA   L   G  + K F G 
Sbjct: 124 VGLLDGRAVDVVLSDMAPNLSGVEVTDAARIANLVELALEFAQSHLKPQGALVCKVFHGS 183

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + ++   K+ F+ V  VKP ASR  S E FL+  G +
Sbjct: 184 GYSQLVDQFKRTFRVVKAVKPKASRDRSAETFLVGIGLK 222


>gi|167823655|ref|ZP_02455126.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 9]
          Length = 256

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 104/189 (55%), Gaps = 10/189 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-- 87
           ++ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A    
Sbjct: 1   MHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL 60

Query: 88  ITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
             G   +  R       ++A+D+L MEP+  V F + DF +      + + + G   DLV
Sbjct: 61  AQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQLEEVLAGRAVDLV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K  
Sbjct: 121 ISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQ 180

Query: 200 FQKVIHVKP 208
           F+ V   KP
Sbjct: 181 FKTVAPRKP 189


>gi|15791077|ref|NP_280901.1| hypothetical protein VNG2263G [Halobacterium sp. NRC-1]
 gi|169236828|ref|YP_001690028.1| 23S rRNA methyltransferase [Halobacterium salinarum R1]
 gi|74568838|sp|Q9HN40|RLME_HALSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703307|sp|B0R7G3|RLME_HALS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|10581676|gb|AAG20381.1| cell division protein [Halobacterium sp. NRC-1]
 gi|167727894|emb|CAP14682.1| 23S rRNA methyltransferase [Halobacterium salinarum R1]
          Length = 259

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 108/191 (56%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +++ EG+R+R+AYKL Q++++  +L     +VDLG++PG W QVAA   G+    
Sbjct: 6   DHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGARG-- 63

Query: 96  TRVVAID---ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            +VV +D   I   E   G++  + D  + ++ + +R A  G+ D+V+SDMA    G   
Sbjct: 64  -KVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGSADVVVSDMAPDMTGEYD 122

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH R++ L   A   A E+L+ GG F+VK F G    D+L  ++  F  V    P ASR
Sbjct: 123 LDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADIEDEFAFVATHSPDASR 182

Query: 213 AESVEMFLLAK 223
             S E++++ K
Sbjct: 183 DASSELYVVGK 193


>gi|261349524|ref|ZP_05974941.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
           smithii DSM 2374]
 gi|288861888|gb|EFC94186.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
           smithii DSM 2374]
          Length = 207

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 5/200 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W     +DPY ++A+ E +R+R++YK+ Q+++K ++++    +VDLG++PG WSQVA   
Sbjct: 5   WQMEKKHDPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEK 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       V+ +D+  ++P     F   + DF   +  E +   IGG   +V+SD +  
Sbjct: 65  VGEEG---LVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAKVVISDASPS 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G + ID LR++ L       A  +L   G+ ++K FQG    D+L  LKK +++V   
Sbjct: 122 LCGIKNIDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVKTT 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR +S EM+++   F+
Sbjct: 182 KPPSSRKKSSEMYVVGLDFK 201


>gi|289192039|ref|YP_003457980.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           sp. FS406-22]
 gi|288938489|gb|ADC69244.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           sp. FS406-22]
          Length = 246

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +   D Y + A+   +R+R+++KL+Q+NEK  +++  + ++DLG +PG W QVA  I
Sbjct: 8   WILQRKKDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREI 67

Query: 89  TGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNP---DLVLSDM 143
            G       ++ ID+  ++P     V   K DF   +S   IR+ I       D+V+SD 
Sbjct: 68  VGDKGF---IIGIDLQPVKPFEYDNVVAIKGDFTLEESLNKIRELIPNEEKKVDVVISDA 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G+  IDH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F+KV
Sbjct: 125 SPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFEKV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP ASR ES E++++AK +
Sbjct: 185 YITKPQASRKESAEVYVIAKRY 206


>gi|296109210|ref|YP_003616159.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocaldococcus
           infernus ME]
 gi|295434024|gb|ADG13195.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocaldococcus
           infernus ME]
          Length = 245

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 9/208 (4%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
             ++W+ +   DPY + A+   +R+R+ +KLLQINEK   L+  + ++DLG +PG W + 
Sbjct: 4   KDKNWIMKRKRDPYYRLAKKLKYRSRAYFKLLQINEKFHFLKPKQAVLDLGCAPGGWMEA 63

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKF--DFLDLDSW----EFIRQAIGGNPDL 138
           A  I G   +   +V ID+  ++P           DF    +     E +R+      D+
Sbjct: 64  AKEIVG---DQGLIVGIDLQKVKPFKDKNLIPIQGDFTKERNLKKIKEILRERGREKFDV 120

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD +    GH  +DH R++ L + A   A EML   G F+ K F G   +++  L KK
Sbjct: 121 VISDASPNISGHWAVDHARSVELVKTALQIATEMLRKDGHFVAKVFYGDMVDELKNLAKK 180

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +F KV   KP ASR ES E++L+AK F+
Sbjct: 181 YFDKVYLTKPRASRKESSEIYLIAKRFK 208


>gi|281207786|gb|EFA81966.1| rRNA methyltransferase [Polysphondylium pallidum PN500]
          Length = 336

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 51/258 (19%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           R +   +K++S      +WL R ++DPYV++AQL+ + +R+A+KL ++++K ++L++   
Sbjct: 62  RSIASNLKDKS------EWLKRQLSDPYVKQAQLKSYVSRAAFKLEELDDKLKVLKAGSV 115

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDLG++PG W+QVA +  G   N+  V ++DI  D   +    F   DF   ++   I+
Sbjct: 116 VVDLGATPGGWTQVAQKRVG---NSGIVFSVDINEDGFELARANFIGGDFRSPETKLAIK 172

Query: 130 QA-----------------------------------------IGGNPDLVLSDMAYPTI 148
            A                                         + G  D+VLSDMA P  
Sbjct: 173 NALLKERSKRSKRSKSSSSSSKSGTTTTTIATATNDVDNNNIDVNGFVDVVLSDMAPPYC 232

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +DH R + L   A  FA+E L  GG F+ K  +GG+ N++L  +++HF     +KP
Sbjct: 233 GISNVDHERLIDLAGQALDFAVETLKSGGYFIAKVSRGGSENELLKRIQQHFTTYKSMKP 292

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR ES E++ +   F+
Sbjct: 293 DASRQESSEIYYIGVKFK 310


>gi|242066866|ref|XP_002454722.1| hypothetical protein SORBIDRAFT_04g036220 [Sorghum bicolor]
 gi|241934553|gb|EES07698.1| hypothetical protein SORBIDRAFT_04g036220 [Sorghum bicolor]
          Length = 317

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+++  I    +R+VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLSRNLYVPAKQ 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           + + +      +VAID+  M PI GV   + D  +  + E  IR   G   DLV+ D A 
Sbjct: 70  SPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F +V  
Sbjct: 130 DVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFFSQVTF 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F + + +
Sbjct: 190 AKPKSSRNSSIEAFAVCENY 209


>gi|21593533|gb|AAM65500.1| cell division-like protein [Arabidopsis thaliana]
          Length = 308

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 88  ------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
                     + +   +VAID+  M PI GV   + D  +  +   IR   G   DLV+ 
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTEVVIRHFDGCKADLVVC 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F 
Sbjct: 125 DGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFFP 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP +SR  S+E F + + +
Sbjct: 185 TVTFAKPKSSRNSSIEAFAVCENY 208


>gi|19115658|ref|NP_594746.1| tRNA 2'-O-ribose methyltransferase (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|9910977|sp|O36015|YEK3_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase C4F10.03c;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2656003|emb|CAB11724.1| tRNA 2'-O-ribose methyltransferase (predicted) [Schizosaccharomyces
           pombe]
          Length = 285

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +GWRARSA+KLLQ+NE+  + +  +R+VDL ++PGSWSQV +R    N + 
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLSRELLKNIDT 69

Query: 96  T-------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
           +        +VA+D+  M PI GV   + D    ++   I    G  P DLV+SD A   
Sbjct: 70  SIAADEKPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      +  AA   A+ +L  GG F+ K F+G   + +   L+  F+KV   K
Sbjct: 130 TGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SRA S+E F++ + F
Sbjct: 190 PRSSRASSIESFVVCEDF 207


>gi|283853680|ref|ZP_06370911.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp.
           FW1012B]
 gi|283570921|gb|EFC18950.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp.
           FW1012B]
          Length = 201

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+LE + ARS YKL +I ++ ++L    +++DLG+ PGSW+   A+  G     
Sbjct: 6   DHYFNKAKLENYPARSVYKLQEIEKQSRLLVPGAKVLDLGACPGSWTLFTAKRIGPQG-- 63

Query: 96  TRVVAIDI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            RV+AID+     E    V +   D LD         A  G  D+V+SDMA  T G +  
Sbjct: 64  -RVLAIDLNPAGTEFPDNVTYLLGDMLDPGPDILEAFAAFGPFDVVISDMAPQTTGIKFT 122

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R++ LCEAA   A E L  GG F+VK FQG      L  L++ FQKV   KP +SRA
Sbjct: 123 DQCRSLELCEAALSVARERLRPGGGFVVKIFQGPDAPAYLKGLREFFQKVRVAKPQSSRA 182

Query: 214 ESVEMFLLAKGF 225
           ES E+F +A GF
Sbjct: 183 ESKEIFYVATGF 194


>gi|196000356|ref|XP_002110046.1| hypothetical protein TRIADDRAFT_53586 [Trichoplax adhaerens]
 gi|190588170|gb|EDV28212.1| hypothetical protein TRIADDRAFT_53586 [Trichoplax adhaerens]
          Length = 266

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 5/213 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           L+ +   R  + SS  WL R  +DPYV++A   G+R+RSA+KLL++++K +I +    ++
Sbjct: 33  LSARFYARGRKSSSSRWLRRQRDDPYVKKAMELGYRSRSAFKLLEMDKKFKIFKKGDIVI 92

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQA 131
           D+G+SPGSW+QVA   TG       V+A+DI  M+ +     F   DF    +  FI+  
Sbjct: 93  DIGASPGSWTQVALDKTGKRG---LVMAVDIRGMKSVGEAMIFDHMDFGVPSTHTFIQNM 149

Query: 132 -IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
            +    D+++SDM+    G  K DH   M+    A  F    L   G F+ K F G    
Sbjct: 150 LVNSKADVIMSDMSPNVAGSPKFDHQAIMTQALCALKFTFANLVYNGTFICKMFHGSDEG 209

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
               +LK+++ ++   KP ASR+ES E + + +
Sbjct: 210 LFKDMLKQNYHRINEFKPAASRSESNEFYYICR 242


>gi|17554650|ref|NP_497843.1| hypothetical protein R74.7 [Caenorhabditis elegans]
 gi|9910861|sp|Q22031|RRMJ1_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase R74.7;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|5824584|emb|CAA85279.2| C. elegans protein R74.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 337

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 1/192 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+  RR VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLY 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +D+  + I+   G   D+V+ D A    G
Sbjct: 65  EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +KK+F+KV   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPR 184

Query: 210 ASRAESVEMFLL 221
           +SR  S E F+L
Sbjct: 185 SSRQSSCEAFVL 196


>gi|15669566|ref|NP_248379.1| cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
 gi|3023819|sp|Q58771|RLME_METJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|1592021|gb|AAB99383.1| cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
          Length = 245

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +   D Y + A+   +R+R+++KL+Q+NEK  +++  + ++DLG +PG W QVA  I
Sbjct: 8   WVLQRKRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREI 67

Query: 89  TGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNP---DLVLSDM 143
            G       V+ ID+  ++P     V   K DF   ++   IR+ I  +    D+V+SD 
Sbjct: 68  VGDKGF---VIGIDLQPVKPFEYDNVVAIKGDFTLEENLNKIRELIPNDEKKVDVVISDA 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G+  IDH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F+KV
Sbjct: 125 SPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFEKV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP ASR ES E++++AK +
Sbjct: 185 YITKPQASRKESAEVYVIAKRY 206


>gi|115469828|ref|NP_001058513.1| Os06g0704900 [Oryza sativa Japonica Group]
 gi|53792764|dbj|BAD53799.1| putative FtsJ homolog 1 isoform b [Oryza sativa Japonica Group]
 gi|113596553|dbj|BAF20427.1| Os06g0704900 [Oryza sativa Japonica Group]
 gi|215736929|dbj|BAG95858.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218198852|gb|EEC81279.1| hypothetical protein OsI_24387 [Oryza sativa Indica Group]
 gi|222636192|gb|EEE66324.1| hypothetical protein OsJ_22564 [Oryza sativa Japonica Group]
          Length = 317

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+++  I    +R+VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLSRNLYVPAKQ 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           + + +      +VAID+  M PI GV   + D  +  + E  IR   G   DLV+ D A 
Sbjct: 70  SPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F +V  
Sbjct: 130 DVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFFSQVTF 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F + + +
Sbjct: 190 AKPKSSRNSSIEAFAVCENY 209


>gi|123446753|ref|XP_001312124.1| cell division protein [Trichomonas vaginalis G3]
 gi|121893960|gb|EAX99194.1| cell division protein, putative [Trichomonas vaginalis G3]
          Length = 244

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 2/192 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ EGWRARSA+KL+Q+ +  ++  +  R+VDL ++PGSWSQV A+   S   N
Sbjct: 9   DTFYRAAKQEGWRARSAFKLIQVADHFRLFDNVTRVVDLCAAPGSWSQVCAQRL-SKVPN 67

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKID 154
           + +VA+D+  M PI GV   + D    ++ + +  A+ G   DLV+SD A    G   +D
Sbjct: 68  SAIVAVDLQPMAPIPGVIQIRGDITSKETAQQVIDAMNGKKADLVISDGAPDVTGLHDLD 127

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  +A   A  ML  GG F+ K F G    D+   L   F+ V  +KP ASR  
Sbjct: 128 EYMQSQLVFSAFNIACFMLREGGTFMAKIFTGRDIQDLYSSLSPFFETVTAMKPRASRVA 187

Query: 215 SVEMFLLAKGFR 226
           S+E F++ +GF+
Sbjct: 188 SLESFVVCQGFK 199


>gi|238899017|ref|YP_002924699.1| 23S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259494566|sp|C4K7K8|RLME_HAMD5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|229466777|gb|ACQ68551.1| 23S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 208

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 4/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H ND YV  AQ +  R+R+ +KL +I+   +I +    ++DLG++PG WSQ     
Sbjct: 13  WLQEHFNDKYVIEAQKKKLRSRAWFKLDEIDNTDKIFKRGMFVLDLGAAPGGWSQYVVNK 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G      +V+A+D+L M+ ILGV+F + DF +    + +   IG    D+V+SDMA   
Sbjct: 73  VGLKG---KVIALDLLPMDSILGVEFLQGDFREKSILKRLLNCIGDKKIDVVISDMAPNM 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  ++M L E A   + ++L  GG FLVK FQG      L  ++  F+KV   K
Sbjct: 130 TGISSVDIPKSMHLAELAFDISRDILIPGGSFLVKVFQGEGFEQYLREMRSLFKKVKVRK 189

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR  S E++++A G +
Sbjct: 190 PDASRIRSREVYIVATGLK 208


>gi|168042748|ref|XP_001773849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674836|gb|EDQ61339.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 295

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D Y ++A+ EGWRARSA+KLLQI+E+  IL+  +R+VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFGILEGAKRVVDLCAAPGSWSQVLSRKLYQPAVA 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
           +   +  +VAID+  M PI GV   + D     + E  I    GG  DLV+ D A    G
Sbjct: 70  AGEPHPLIVAIDLQPMAPIDGVLQIQGDITSAKTAELVIGHFDGGKADLVVCDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+F+ K F+G   + +   LK  F  V   KP 
Sbjct: 130 LHDMDEFVQSQLILAALTIVTHVLRPGGNFVAKIFRGKDISLLYTQLKIFFPVVTCAKPK 189

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F++ +G+
Sbjct: 190 SSRNSSIEAFVVCEGY 205


>gi|312136699|ref|YP_004004036.1| 23S rRNA um-2552 2'-o-methyltransferase [Methanothermus fervidus
           DSM 2088]
 gi|311224418|gb|ADP77274.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanothermus fervidus
           DSM 2088]
          Length = 203

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 119/201 (59%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W  +   D Y + A+ E + +R+AYKL+Q+N+K ++++    ++DLG++PG WSQVA 
Sbjct: 3   KRWWRQRKKDYYYRLAKKEKYYSRAAYKLIQLNKKFKLIRRGNVVLDLGAAPGGWSQVAI 62

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           ++ GS     +VVA+DI  M+P+      F + DF D    + I++   G  D+++SD +
Sbjct: 63  KLVGSKG---KVVAVDIKKMKPLKYENFSFIQGDFTDPKIQKKIKEITEGGVDVIISDAS 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + +DH+R++ LC++    A  +L  GG+ +VK FQG    ++L  LK  F+ V 
Sbjct: 120 PSLSGIKDLDHIRSIELCKSVINIAKNVLKRGGNLVVKVFQGPEFKNLLDELKNEFKYVK 179

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +S   S E++++AK F
Sbjct: 180 ASKPPSSEKSSAEIYVVAKYF 200


>gi|258405869|ref|YP_003198611.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfohalobium
           retbaense DSM 5692]
 gi|257798096|gb|ACV69033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfohalobium
           retbaense DSM 5692]
          Length = 199

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 8/199 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ + + ARS YKL +++++ Q L   +RI+DLG++PGSW+  AA+ TG+
Sbjct: 2   KKYRDHYFKRAKQDNYPARSVYKLQELDKRFQFLAKGQRILDLGAAPGSWTLFAAKKTGA 61

Query: 92  NANNTRVVAIDI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
                RVVA+D+  +D+E    V   + D L   S  F        P D+VLSDMA  T 
Sbjct: 62  AG---RVVAVDLQAIDIELPDHVTALQDDLLH-PSPRFAEVMGSQAPFDVVLSDMAPKTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNI-GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G +  D  R++ L E A   AL+ L   GG F+VK F+G      +  L+++F+KV   K
Sbjct: 118 GVKITDQARSLELAEMARDVALDTLKTPGGTFVVKIFEGPDVPQYVSDLRQYFKKVKTAK 177

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SRAES E+F++  GF+
Sbjct: 178 PKSSRAESKEIFVMGFGFK 196


>gi|73670706|ref|YP_306721.1| 23S RNA methyltransferase J [Methanosarcina barkeri str. Fusaro]
 gi|121722047|sp|Q466Q1|RLME_METBF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|72397868|gb|AAZ72141.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanosarcina barkeri
           str. Fusaro]
          Length = 263

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 115/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y ++A+ EG+R+R+++KL QINE+H I+     +VDLG++PG W QVA  ++
Sbjct: 1   MARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKELS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
           G      +V+ +D+  + PI GV+  + +     + + I + +G    D+VL D A    
Sbjct: 61  GG-----KVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVLCDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   DH R++ L  +A   A ++L   G+F+VK FQG   ND +  ++ +F + +   P
Sbjct: 116 GNWSYDHARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNFVRTMAYSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR++S E++++ K F
Sbjct: 176 KASRSQSAEIYVIGKKF 192


>gi|298400895|gb|ADI81767.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSN 92
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN
Sbjct: 7   DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSN 66

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M P+ GVK  + D   + +  E I++  G   DLV+ D A    G  
Sbjct: 67  TDDVKIVAVDLQAMAPLPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLH 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 127 DIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDFVTVSKPRSS 186

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 187 RNSSIEAFVICQNYK 201


>gi|326484862|gb|EGE08872.1| ribosomal RNA methyltransferase MRM2 [Trichophyton equinum CBS
           127.97]
          Length = 291

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 119/258 (46%), Gaps = 63/258 (24%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R   D Y + A ++G ++R+A+KLLQIN+++++ +S + +VDLG +PGSWSQV
Sbjct: 26  SSKQWQARQGKDAYTKEASMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQV 85

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------------ 132
           A  +T       RVV +DI+  +P  GV   + +FL     E+++  +            
Sbjct: 86  AFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQL 142

Query: 133 --------------------GGNPDLVLS--------DMAYP------------------ 146
                               GG  DL  S        D A P                  
Sbjct: 143 PTLNEQGKSSPSTEPGAETDGGYIDLERSSSAHINKDDDAAPLPTKAKVGSVDVILSDML 202

Query: 147 --TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G +  DHL +M LC+AA  FA  +L  GG F+ K +QG    D    LK+ F +V 
Sbjct: 203 MNTSGTKSRDHLGSMELCKAALDFASNVLKEGGHFVCKYYQGPGEKDFENELKRLFHRVY 262

Query: 205 HVKPVASRAESVEMFLLA 222
             KP +SR+ES E + + 
Sbjct: 263 REKPESSRSESKEAYFIG 280


>gi|118150968|ref|NP_001071402.1| FtsJ homolog 1 [Bos taurus]
 gi|117306288|gb|AAI26604.1| FtsJ homolog 1 (E. coli) [Bos taurus]
 gi|296470729|gb|DAA12844.1| FtsJ homolog 1 [Bos taurus]
          Length = 307

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + KG+
Sbjct: 189 SIEAFAVCKGY 199


>gi|332297375|ref|YP_004439297.1| Ribosomal RNA large subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
 gi|332180478|gb|AEE16166.1| Ribosomal RNA large subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
          Length = 198

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 10/193 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  EG+ ARS YKL +I+EK  +++ N R++DLG+SPGSW+    R    + + 
Sbjct: 10  DYWSRKAFSEGYPARSVYKLKEIDEKFGMIRKNYRVLDLGASPGSWTVFVLRALDGSGHV 69

Query: 96  TRVVAIDILDMEPIL-GVKFFKFDFL--DLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
           T V      D+ P+   VK     F+  DL   +  RQA+   P DLV+ D A PT G+R
Sbjct: 70  TSV------DLNPLAKNVKGENLTFIQGDLYDADVRRQAMELGPYDLVVCDAAPPTTGNR 123

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D  R+  L E A ++A  ML  GG+F VK FQGG    +L  ++  F      KP A 
Sbjct: 124 VVDTARSTGLVELAVYYAQTMLKAGGNFAVKVFQGGDQQALLKTMRGMFSSAKGFKPEAC 183

Query: 212 RAESVEMFLLAKG 224
           R+ES E +L+  G
Sbjct: 184 RSESFETYLVGLG 196


>gi|148642568|ref|YP_001273081.1| cell division protein J (23S rRNA methylase), FtsJ
           [Methanobrevibacter smithii ATCC 35061]
 gi|158513776|sp|A5UKI5|RLME_METS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|148551585|gb|ABQ86713.1| cell division protein J (23S rRNA methylase), FtsJ
           [Methanobrevibacter smithii ATCC 35061]
          Length = 210

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 110/199 (55%), Gaps = 5/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W     +DPY ++A+ E +R+R++YK+ Q+++K ++++    +VDLG++PG WSQVA   
Sbjct: 5   WQMEKKHDPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEK 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       V+ +D+  ++P     F   + DF   +  E +   IGG   +V+SD +  
Sbjct: 65  VGEEG---LVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAKVVISDASPS 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G + ID LR++ L       A  +L   G+ ++K FQG    D+L  LKK +++V   
Sbjct: 122 LCGIKNIDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVKTT 181

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR +S EM+++   F
Sbjct: 182 KPPSSRKKSSEMYVVGLDF 200


>gi|327301813|ref|XP_003235599.1| cell division protein ftsj [Trichophyton rubrum CBS 118892]
 gi|326462951|gb|EGD88404.1| cell division protein ftsj [Trichophyton rubrum CBS 118892]
          Length = 291

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 118/258 (45%), Gaps = 63/258 (24%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R   D Y + A ++G ++R+A+KLLQIN+++++ +S + +VDLG +PGSWSQV
Sbjct: 26  SSKQWQARQGKDAYTKEASIQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQV 85

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------------ 132
           A  +T       RVV +DI+  +P  GV   + +FL     E+++  +            
Sbjct: 86  AFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQL 142

Query: 133 --------------------GGNPDLVLS--------DMAYP------------------ 146
                               GG  DL  S        D A P                  
Sbjct: 143 PALGEQEKPSPPTEPGAETDGGYIDLERSSSAHINKVDEAAPLPTKAKVGSVDVILSDML 202

Query: 147 --TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G +  DHL +M LC AA  FA  +L  GG F+ K +QG    D    LK+ F +V 
Sbjct: 203 MNTSGTKSRDHLGSMELCNAALDFASNVLKEGGHFVCKYYQGSGEKDFENDLKRLFHRVY 262

Query: 205 HVKPVASRAESVEMFLLA 222
             KP +SR+ES E + + 
Sbjct: 263 REKPESSRSESKEAYFIG 280


>gi|213403496|ref|XP_002172520.1| tRNA 2'-O-ribose methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212000567|gb|EEB06227.1| tRNA 2'-O-ribose methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 280

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--- 92
           D Y + A+ +GWRARSA+KLLQ+NE+  + +  RR+VDL ++PGSWSQV +R    N   
Sbjct: 10  DAYYRMAKEQGWRARSAFKLLQLNEQFDLFKGVRRVVDLCAAPGSWSQVLSRELVQNVPA 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
           +    +V++D+  M P+ GV   + D    D+   I    G  P DLV+SD A    G  
Sbjct: 70  SERPTIVSVDLQPMAPLEGVCTLQLDITHPDTLPIILSHFGDEPADLVVSDGAPDVTGLH 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D      +  AA   A  +L  GG F+ K F+G   + +   L+  F+ V   KP +S
Sbjct: 130 DLDEYIQAQILLAAMNLAACVLRPGGTFVAKIFRGRDVSLLYSQLRLLFKHVTCAKPRSS 189

Query: 212 RAESVEMFLLAKGF 225
           RA S+E F++ + F
Sbjct: 190 RASSLEAFVVCQDF 203


>gi|62857467|ref|NP_001016817.1| FtsJ homolog 1 [Xenopus (Silurana) tropicalis]
 gi|89273969|emb|CAJ81745.1| FtsJ homolog 1 (E. coli) [Xenopus (Silurana) tropicalis]
          Length = 335

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 110/195 (56%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSN-- 92
           D Y + A+ EGWRARSA+KLLQ++E++++ Q  +R VDL ++PGSWSQV +R + GS   
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDEEYRLFQGVQRAVDLCAAPGSWSQVLSRKLRGSEEQ 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
           +   ++VA+D+  M P+ GV   + D   + +  E IR   G   DLV+ D A    G  
Sbjct: 70  SGQVKIVAVDLQAMAPLPGVIQIQGDITKVSTAHEIIRHFEGQPADLVVCDGAPDVTGLH 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   L+  F++V   KP +S
Sbjct: 130 DIDEYIQAQLLLAALNITTHVLRDGGTFVAKIFRGKDVTLLYSQLQIFFREVTCAKPRSS 189

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ +G+R
Sbjct: 190 RNSSIEAFVVCQGYR 204


>gi|296080818|ref|NP_001171684.1| FtsJ homolog 1 [Sus scrofa]
 gi|197281892|gb|ACH57153.1| FtsJ-like protein 1 [Sus scrofa]
          Length = 329

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLTTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + KG+
Sbjct: 189 SIEAFAVCKGY 199


>gi|123449199|ref|XP_001313321.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
 gi|121895200|gb|EAY00392.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
          Length = 250

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A  EGWRARSAYKL+Q+  +   L+ + R+VDL S+PGSWSQV A++     + 
Sbjct: 9   DVYKKTAVEEGWRARSAYKLIQVESEMHFLKDSTRVVDLCSAPGSWSQVCAKLM-PETDA 67

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKID 154
            ++++ID+  + PI GV   + D  D+ + E +   + GN  D VL+D A  TI   + D
Sbjct: 68  RKIISIDLRRIVPIDGVTELRGDITDVKTAENVISLLDGNKADAVLADGAPDTIIRIEFD 127

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                ++ +A+   A  +L  GG F+ K F+  +   +L +    F K+   KP A R  
Sbjct: 128 EYVQHNIVKASLTIATMVLREGGTFVSKIFRTKSLPKLLAIFGCFFSKITMCKPRACRLS 187

Query: 215 SVEMFLLAKGFR 226
           SVE F++ +GF+
Sbjct: 188 SVESFIVCQGFK 199


>gi|171318232|ref|ZP_02907395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MEX-5]
 gi|171096576|gb|EDT41470.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MEX-5]
          Length = 199

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 10/196 (5%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--ITGSNANNTR-- 97
           AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A      G   +  R  
Sbjct: 2   AQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNKLAQGKKRDTQREG 61

Query: 98  -----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
                ++A+D+L MEPI  V F + DF + D    +   + G   DLV+SDMA    G  
Sbjct: 62  GIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLEDLLEGRAVDLVISDMAPNLSGVA 121

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R   LC+ A  FA   L   G  LVK F G   + I+   K+ F+ V   KP AS
Sbjct: 122 SADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVVAPRKPKAS 181

Query: 212 RAESVEMFLLAKGFRK 227
           R +S E F+L +  ++
Sbjct: 182 RDKSSETFILGRQLKQ 197


>gi|326474733|gb|EGD98742.1| cell division protein ftsj [Trichophyton tonsurans CBS 112818]
          Length = 291

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 119/258 (46%), Gaps = 63/258 (24%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R   D Y + A ++G ++R+A+KLLQIN+++++ +S + +VDLG +PGSWSQV
Sbjct: 26  SSKQWQARQGKDAYTKEASMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQV 85

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------------ 132
           A  +T       RVV +DI+  +P  GV   + +FL     E+++  +            
Sbjct: 86  AFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPWSQL 142

Query: 133 --------------------GGNPDLVLS--------DMAYP------------------ 146
                               GG  DL  S        D A P                  
Sbjct: 143 PTLNEQGKSSPSTEPGAETDGGYIDLERSSSAHINKDDDAAPLPTKAKVGSVDVILSDML 202

Query: 147 --TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G +  DHL +M LC+AA  FA  +L  GG F+ K +QG    D    LK+ F +V 
Sbjct: 203 MNTSGTKSRDHLGSMELCKAALDFASNVLKEGGHFVCKYYQGPGEKDFENELKRLFHRVY 262

Query: 205 HVKPVASRAESVEMFLLA 222
             KP +SR+ES E + + 
Sbjct: 263 REKPESSRSESKEAYFIG 280


>gi|297806107|ref|XP_002870937.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316774|gb|EFH47196.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 309

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 108/205 (52%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 88  -ITGSNANNTR-----VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
               S+A +       +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKEGGLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PTVTFAKPKSSRNSSIEAFAVCENY 209


>gi|46877062|ref|NP_598752.2| Ftsj homolog [Mus musculus]
 gi|26331300|dbj|BAC29380.1| unnamed protein product [Mus musculus]
 gi|123229059|emb|CAM17936.1| Ftsj homolog 1 (E. coli) [Mus musculus]
          Length = 324

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|30679168|ref|NP_851026.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|26983822|gb|AAN86163.1| putative cell division protein [Arabidopsis thaliana]
 gi|332002931|gb|AED90314.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 309

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 88  ------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PTVTFAKPKSSRNSSIEAFAVCENY 209


>gi|222423600|dbj|BAH19769.1| AT5G01230 [Arabidopsis thaliana]
          Length = 309

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 88  ------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDDAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PTVTFAKPKSSRNSSIEAFAVCENY 209


>gi|239609240|gb|EEQ86227.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis ER-3]
          Length = 309

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 120/261 (45%), Gaps = 67/261 (25%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  R   D Y + A ++G ++R+A+KL+QINEKH+I +  + +VDLG +PGSWSQVA  +
Sbjct: 41  WQARQAKDKYSREAAVKGLKSRAAFKLIQINEKHKIFKPGQSVVDLGYAPGSWSQVAVDL 100

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLD--LDSW--EFIR--------------- 129
           T       RVV +DI+  +P  GV   + +FL   + ++  EF+R               
Sbjct: 101 TQPKG---RVVGVDIIPAQPPKGVSTIQGNFLSPQIQAYVQEFLRNPNRGRAQSLNHFDD 157

Query: 130 -------------------------------QAIGGNPDL------------VLSDMAYP 146
                                          Q  GGN D+            VLSDM   
Sbjct: 158 ADPRSQPQADSEVEETEGYIDRERSASLHIAQVDGGNEDIPDIAVADKTVDVVLSDMMMN 217

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G    DH  +M LC AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   
Sbjct: 218 TSGMSFRDHAGSMDLCRAALEFSFNVLKTGGHFVCKFYQGAEDKALERQLKELFQNVHRE 277

Query: 207 KPVASRAESVEMFLLAKGFRK 227
           KP +SR+ES E + +  G R+
Sbjct: 278 KPESSRSESKEAYFI--GLRR 296


>gi|22028410|gb|AAH34880.1| FtsJ homolog 1 (E. coli) [Mus musculus]
 gi|123229060|emb|CAM17937.1| Ftsj homolog 1 (E. coli) [Mus musculus]
          Length = 322

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|222445937|ref|ZP_03608452.1| hypothetical protein METSMIALI_01585 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435502|gb|EEE42667.1| hypothetical protein METSMIALI_01585 [Methanobrevibacter smithii
           DSM 2375]
          Length = 217

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 110/199 (55%), Gaps = 5/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W     +DPY ++A+ E +R+R++YK+ Q+++K ++++    +VDLG++PG WSQVA   
Sbjct: 5   WQMEKKHDPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEK 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       V+ +D+  ++P     F   + DF   +  E +   IGG   +++SD +  
Sbjct: 65  VGEEG---LVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAKVIISDASPS 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G + ID LR++ L       A  +L   G+ ++K FQG    D+L  LKK +++V   
Sbjct: 122 LCGIKNIDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVKTT 181

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR +S EM+++   F
Sbjct: 182 KPPSSRKKSSEMYVVGLDF 200


>gi|330801002|ref|XP_003288520.1| hypothetical protein DICPUDRAFT_10143 [Dictyostelium purpureum]
 gi|325081423|gb|EGC34939.1| hypothetical protein DICPUDRAFT_10143 [Dictyostelium purpureum]
          Length = 191

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 8/198 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ RH+ D YV+ A+     +R+A+KL+ IN++ ++L+    +VDLG+SPGSW+Q+A   
Sbjct: 1   WMKRHLTDIYVKEAKALSLVSRAAFKLININKQLRLLKPGMIVVDLGASPGSWTQIA--- 57

Query: 89  TGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
                +N  V+++DI  + +      F + DF   ++ + I +      D +LSDMA   
Sbjct: 58  RAEVKDNGLVISVDINSNFQLTEKAPFIQGDFTKKETQDKILEF----ADSILSDMAPHY 113

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++DH R + L   A  FAL++L  GG F+ K  +GG   +   LL+K F  V  +K
Sbjct: 114 CGIPQVDHSRLIELQTTALNFALQVLKPGGSFVCKVSRGGEEKEFFKLLEKDFASVKTMK 173

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E++ +AK F
Sbjct: 174 PDASRKESTEIYYIAKDF 191


>gi|123229058|emb|CAM17935.1| Ftsj homolog 1 (E. coli) [Mus musculus]
          Length = 308

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|255581073|ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
 gi|223529050|gb|EEF31036.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
          Length = 316

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 91  SNANNTR---------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
             A  T+         +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLTQDSRDDNLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209


>gi|328867319|gb|EGG15702.1| rRNA methyltransferase [Dictyostelium fasciculatum]
          Length = 254

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSNAN 94
           D Y ++A+ EG+RARSA+KLLQI++ + I +  +R+VDL ++PGSWSQ  +R I G  ++
Sbjct: 10  DIYYRKAKEEGYRARSAFKLLQIDDDYNIFEGVKRVVDLCAAPGSWSQALSRKIYGDGSD 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            + ++VA+DI +M P+ GV   + D   L++  E   Q  G   DLV+SD A    G   
Sbjct: 70  PDVKIVAVDIQEMAPLKGVVQIRGDITKLETALEITNQFDGKQADLVVSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L  AA      +L  GG F+ K F+G     +   L+  F+ V  VKP +SR
Sbjct: 130 IDFYGQSQLILAALNITTHILRPGGCFVAKMFKGNDMTLMYNQLRVFFRSVQFVKPKSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F+L + +
Sbjct: 190 NSSLEAFVLCQHY 202


>gi|293350731|ref|XP_001062916.2| PREDICTED: Ftsj homolog 1 (E. coli)-like [Rattus norvegicus]
 gi|293362770|ref|XP_343772.4| PREDICTED: Ftsj homolog [Rattus norvegicus]
          Length = 324

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G  ++ 
Sbjct: 10  DVYYRLAKEKGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQSSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|45358169|ref|NP_987726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis S2]
 gi|74555203|sp|Q6LZL8|RLME_METMP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|44920926|emb|CAF30162.1| 23 S ribosomal RNA methyltransferase related [Methanococcus
           maripaludis S2]
          Length = 258

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 110/205 (53%), Gaps = 17/205 (8%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A  I
Sbjct: 8   WVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDI 67

Query: 89  TGSNANNTRVVAIDILDMEP-----ILGVKFFKFDFLDLDSWEFIRQA---IGGNPDLVL 140
            G +     +V ID+  ++P     I+ +K       D+   E ++QA   +   PD+++
Sbjct: 68  VGEDGF---IVGIDLQTVKPLPHDNIIAIKG------DMTKEEILKQAKDLLPEKPDVII 118

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D +    G   +DH+R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F
Sbjct: 119 CDASPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYF 178

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            K    KP ASR ES E++++ K F
Sbjct: 179 DKAFTTKPRASRDESAEVYVIGKRF 203


>gi|134107752|ref|XP_777487.1| hypothetical protein CNBB0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260179|gb|EAL22840.1| hypothetical protein CNBB0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 254

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 34/232 (14%)

Query: 29  WLNRHINDPYVQR-------AQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGS 80
           WL R   DPYV++            +R+RS++KL+ + + H IL +  + +VDLG++PG 
Sbjct: 17  WLTRQSRDPYVRQRTGTSSSPSQPSYRSRSSFKLVSLAKSHPILSRETKSVVDLGAAPGG 76

Query: 81  WSQVAARITGSNANNT---RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----- 132
           WSQVAA + G +   T   RV AIDIL M+PI  V+  + DFL     E ++  +     
Sbjct: 77  WSQVAAHLLGVDKKPTSKPRVWAIDILPMDPIPAVQTLQGDFLSSSVRETLQSLVGTPES 136

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-----------------I 175
           GG  D VLSDM  P  G R  D   ++ LC AAT FA  +L                   
Sbjct: 137 GGGVDTVLSDMMAPMTGVRTRDVGLSLELCAAATVFARGVLKQASKEDEVKVVKGKKVWP 196

Query: 176 GGDFLVKTFQGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG+ ++K F     ++   L L + F KV+  KP  SR+ES E + +  GF+
Sbjct: 197 GGNLVMKFFAHPDLDEFRKLELDRWFGKVVVEKPKESRSESSEAYWVCLGFK 248


>gi|308467426|ref|XP_003095961.1| hypothetical protein CRE_06935 [Caenorhabditis remanei]
 gi|308244230|gb|EFO88182.1| hypothetical protein CRE_06935 [Caenorhabditis remanei]
          Length = 331

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 1/192 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+  RR VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLF 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +D+  + I    G   D+V+ D A    G
Sbjct: 65  EEDKEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIEHFSGDKSDIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +K++F+KV   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLRPGGNFLAKIFRSRNSSLLYAQMKRYFKKVYLAKPR 184

Query: 210 ASRAESVEMFLL 221
           +SR  S E F+L
Sbjct: 185 SSRQSSCEAFVL 196


>gi|284162072|ref|YP_003400695.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Archaeoglobus profundus
           DSM 5631]
 gi|284012069|gb|ADB58022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Archaeoglobus profundus
           DSM 5631]
          Length = 202

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 7/196 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y  +A+  G+R+R+++KL+Q+N   ++++    ++DLG+SPG WSQVA  +   
Sbjct: 2   RDRRDYYYWQAKKLGYRSRASFKLIQMNRTFKLIKEGDWVLDLGASPGGWSQVAVEL--- 58

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
                +VVA+DI  MEPI GV F + D    ++ E I+ ++    D+VLSD +    G  
Sbjct: 59  ---GAKVVAVDINPMEPIEGVHFIRGDITREETLEEIK-SVRRYYDVVLSDASPKISGKW 114

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            IDHL ++ L  +A   A E+L  GG+F+VK FQG    ++    K+ F+      P AS
Sbjct: 115 TIDHLLSIDLARSAFKIAREVLKDGGNFVVKVFQGEEIQNLFNEFKRFFRFKKFHSPKAS 174

Query: 212 RAESVEMFLLAKGFRK 227
           R +S E++ + KGF++
Sbjct: 175 RKQSAEIYFVGKGFKR 190


>gi|225440636|ref|XP_002278921.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297740237|emb|CBI30419.3| unnamed protein product [Vitis vinifera]
          Length = 316

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLF 64

Query: 88  ------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKKGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PIVTFAKPKSSRNSSIEAFAVCENY 209


>gi|326513676|dbj|BAJ87857.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 317

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 104/200 (52%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y ++A+ EGWRARSA+KL+QI+++  I     R VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLMQIDQEFNIFHGVERAVDLCAAPGSWSQVLSRNLYLPAKL 69

Query: 88  -ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
              G +     +VAID+  M PI GV   + D  +  + E  IR   G   DLV+ D A 
Sbjct: 70  SSDGKDGGLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F +V  
Sbjct: 130 DVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFFSQVTF 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F + + +
Sbjct: 190 AKPKSSRNSSIEAFAVCENY 209


>gi|146419553|ref|XP_001485738.1| hypothetical protein PGUG_01409 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 293

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--A 93
           D Y +RA+ EGWRARSA+KLLQ++E+  +    +R+VDL ++PGSWSQV +R    N   
Sbjct: 10  DLYYRRAKEEGWRARSAFKLLQLDEEFGLFSGVKRVVDLCAAPGSWSQVLSREIYKNLKG 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            + ++VA+D+  M PI GV   + D     + + I    GG P D V SD A    G   
Sbjct: 70  EDAKIVAVDLQPMTPIDGVITLQADITHPKTLQRILDIFGGEPADFVCSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L   A      +L  GG F+ K F+G   + +   L   F++V+  KP A R
Sbjct: 130 LDEYIQAQLVLCALQLTTCVLKEGGTFVAKIFRGRDIDLLYSQLGHLFERVVCAKPRALR 189

Query: 213 AESVEMFLLAKGFR 226
             S+E F++  G++
Sbjct: 190 GTSLEAFIVCIGYK 203


>gi|116784269|gb|ABK23279.1| unknown [Picea sitchensis]
          Length = 344

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKA 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           A  +R      +VAID+  M  I GV   + D     + E  I+   G   DLV+ D A 
Sbjct: 70  AAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F  V  
Sbjct: 130 DVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFFSTVTF 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F + + +
Sbjct: 190 AKPKSSRNSSIEAFAVCENY 209


>gi|209876181|ref|XP_002139533.1| tRNA (uridine-2'-O-)-methyltransferase protein [Cryptosporidium
           muris RN66]
 gi|209555139|gb|EEA05184.1| tRNA (uridine-2'-O-)-methyltransferase protein, putative
           [Cryptosporidium muris RN66]
          Length = 264

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVA 100
           A+ EG+RARSAYKLLQ+++ + I +   R VDL ++PGSWSQV ++    N NN   +V+
Sbjct: 16  AKQEGYRARSAYKLLQVDQYYPIFKGVNRAVDLCAAPGSWSQVLSQKLNCNENNNALIVS 75

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTM 159
           +D+ DM PI GV   K D    ++ + I    GG   DLVL D A    G   ID     
Sbjct: 76  VDLQDMAPIEGVNIIKGDITSQNTVDIILDYFGGEKADLVLCDGAPDVTGFHDIDEFIQN 135

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  +A     ++L  GG F+ K F+G     I   +  +F+ V   KP +SR  S+E F
Sbjct: 136 QLLLSALSITTKLLCDGGSFVAKIFRGENIAFIYQQMFYYFEYVDCCKPASSRNSSLEAF 195

Query: 220 LLAKGFR 226
           ++ + F 
Sbjct: 196 IVCRNFN 202


>gi|332526116|ref|ZP_08402254.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rubrivivax
           benzoatilyticus JA2]
 gi|332109959|gb|EGJ10587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rubrivivax
           benzoatilyticus JA2]
          Length = 204

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 6/192 (3%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSNA 93
           ++ AQ +G+R+R+AYKL +I+E   +++  +  VDLG++PG+WSQ      A     + A
Sbjct: 1   MKAAQRDGYRSRAAYKLKEIDEALGLIKPGQVAVDLGATPGAWSQYLRRRFAPEGAAAGA 60

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            +  ++A+DILD EPI GV F + DF + +    +   + G P D+V+SDMA    G   
Sbjct: 61  LDGTIIALDILDFEPIEGVTFLQGDFREDEVAARLAAELAGRPVDIVVSDMAPNLSGIPV 120

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R   L E A  FAL+ L   G  + K F G   + ++ L K  F+ V  +KP ASR
Sbjct: 121 SDAARIAHLVELAVEFALQHLKPEGALVCKAFHGSGYSQLVKLFKDSFRVVKPIKPKASR 180

Query: 213 AESVEMFLLAKG 224
            +S E FL+  G
Sbjct: 181 DKSAETFLVGIG 192


>gi|226500760|ref|NP_001152207.1| ribosomal RNA methyltransferase 1 [Zea mays]
 gi|195653845|gb|ACG46390.1| ribosomal RNA methyltransferase 1 [Zea mays]
 gi|224035109|gb|ACN36630.1| unknown [Zea mays]
          Length = 318

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+++  I    + +VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKHVVDLCAAPGSWSQVLSRNLYVPAKQ 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           +++ +      +VAID+  M PI GV   + D  +  + +  IR   G   DLV+ D A 
Sbjct: 70  SSDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTADVVIRHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F +V  
Sbjct: 130 DVTGLHDMDEFVQSQLILAALAIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFFSQVTF 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F + + +
Sbjct: 190 AKPKSSRNSSIEAFAVCENY 209


>gi|258617564|gb|ACV83779.1| cell division-like protein [Heliconius melpomene]
          Length = 292

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSN 92
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSN 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G  
Sbjct: 70  TDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLH 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 130 DIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSS 189

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 190 RNSSIEAFVICQNYK 204


>gi|298400883|gb|ADI81761.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSN 92
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN
Sbjct: 7   DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSN 66

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G  
Sbjct: 67  TDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLH 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 127 DIDEYVQSQLLLAALNITTHILKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSS 186

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 187 RNSSIEAFVICQNYK 201


>gi|302672597|ref|XP_003025986.1| hypothetical protein SCHCODRAFT_62536 [Schizophyllum commune H4-8]
 gi|300099666|gb|EFI91083.1| hypothetical protein SCHCODRAFT_62536 [Schizophyllum commune H4-8]
          Length = 251

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 24/223 (10%)

Query: 25  SSRDWLNRHINDPYVQ-RAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSW 81
           SS+ W++R + DPYV+ R  L   R+RSA+KLL+I  +H  +     R +VDLG++PG W
Sbjct: 14  SSKAWVSRQLRDPYVKHRLDL---RSRSAFKLLEIEAQHNFIDKPHVRGVVDLGAAPGGW 70

Query: 82  SQVAARITGSN---ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------ 132
           SQ+ +R  G          +VA+D+L M PI GV+  K DFL   + + +R  +      
Sbjct: 71  SQIVSRKLGCTRKARGRGTIVAVDLLPMVPIPGVRTLKGDFLAPSTVQKVRTLLATSENP 130

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML--------NIGGDFLVKTF 184
           GG  D++LSDMA    G    D   ++ +CE+   FA   L        + GG  L+K F
Sbjct: 131 GGKADIILSDMAANASGTGVRDIQSSLDICESVYSFAARNLRSMQETGDSWGGVLLIKYF 190

Query: 185 QGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                 D     L+ +F+KV  VKP ASR++S E + L  GF+
Sbjct: 191 AHPLLEDFSRENLQPNFRKVHLVKPPASRSDSRETYFLCMGFK 233


>gi|291413158|ref|XP_002722848.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
          Length = 333

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PG WSQV ++ TG     
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGGWSQVLSQKTGGQEGG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +V+A+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -QVLAVDLQAMAPLPGVTQIQGDITQLSTAKEIIQHFQGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|149243225|pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
           Putative, From Plasmodium Falciparum (Pf13_0052)
          Length = 201

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 20/198 (10%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
            +R+R+AYKL++++ K+  L+ N+ I+D+G  PGSW QV    T +  N  +++ ID   
Sbjct: 1   NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKN--KIIGIDKKI 58

Query: 106 MEPILGVKFFK----------------FDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPT 147
           M+PI  V F +                 D ++ +S ++  + I  +   D++LSD A P 
Sbjct: 59  MDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPC 118

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           IG++  DHL +  L  + T F  + +NIGG ++VK + G  TN++   LK  FQ V   K
Sbjct: 119 IGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTK 178

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E++L+ K F
Sbjct: 179 PKASRNESREIYLVCKNF 196


>gi|193785818|dbj|BAG51253.1| unnamed protein product [Homo sapiens]
          Length = 327

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV +R  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSRKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|239907722|ref|YP_002954463.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           magneticus RS-1]
 gi|239797588|dbj|BAH76577.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           magneticus RS-1]
          Length = 216

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ + + ARS YKL +I ++ ++L     ++DLG+ PGSWS  AA+  G +   
Sbjct: 9   DHYFNKAKQDNYPARSVYKLEEIEKQSRLLTPGAAVLDLGACPGSWSLYAAKRVGPSG-- 66

Query: 96  TRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIG--GNPDLVLSDMAYPTIGHR 151
            RV+A+D+          V +   D L+      I +A    G  D+VLSDMA  TIGH+
Sbjct: 67  -RVLAVDLNPAATAFPGNVTYLIGDMLE--PGPDIAEAFERFGPFDVVLSDMAPKTIGHK 123

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ LCEAA   A+  L  GG F+VK FQG  +      L+++F  V   KP +S
Sbjct: 124 FTDQARSLELCEAALSVAVTRLKPGGAFVVKIFQGPDSPAFQKGLRQYFSAVRVAKPKSS 183

Query: 212 RAESVEMFLLAKGF 225
           RAES E+F +A GF
Sbjct: 184 RAESKEIFFVATGF 197


>gi|298400869|gb|ADI81754.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400871|gb|ADI81755.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400873|gb|ADI81756.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400877|gb|ADI81758.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400879|gb|ADI81759.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400881|gb|ADI81760.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400885|gb|ADI81762.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400887|gb|ADI81763.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400889|gb|ADI81764.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400893|gb|ADI81766.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400897|gb|ADI81768.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400899|gb|ADI81769.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400901|gb|ADI81770.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400903|gb|ADI81771.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400905|gb|ADI81772.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400907|gb|ADI81773.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400909|gb|ADI81774.1| cell division protein [Heliconius heurippa]
 gi|298400911|gb|ADI81775.1| cell division protein [Heliconius heurippa]
 gi|298400913|gb|ADI81776.1| cell division protein [Heliconius heurippa]
 gi|298400915|gb|ADI81777.1| cell division protein [Heliconius heurippa]
 gi|298400917|gb|ADI81778.1| cell division protein [Heliconius heurippa]
 gi|298400919|gb|ADI81779.1| cell division protein [Heliconius heurippa]
 gi|298400921|gb|ADI81780.1| cell division protein [Heliconius heurippa]
 gi|298400923|gb|ADI81781.1| cell division protein [Heliconius heurippa]
 gi|298400925|gb|ADI81782.1| cell division protein [Heliconius heurippa]
 gi|298400927|gb|ADI81783.1| cell division protein [Heliconius heurippa]
 gi|298400929|gb|ADI81784.1| cell division protein [Heliconius heurippa]
 gi|298400931|gb|ADI81785.1| cell division protein [Heliconius heurippa]
 gi|298400933|gb|ADI81786.1| cell division protein [Heliconius heurippa]
 gi|298400935|gb|ADI81787.1| cell division protein [Heliconius heurippa]
 gi|298400937|gb|ADI81788.1| cell division protein [Heliconius heurippa]
 gi|298400939|gb|ADI81789.1| cell division protein [Heliconius heurippa]
 gi|298400941|gb|ADI81790.1| cell division protein [Heliconius heurippa]
 gi|298400943|gb|ADI81791.1| cell division protein [Heliconius heurippa]
 gi|298400945|gb|ADI81792.1| cell division protein [Heliconius heurippa]
 gi|298400947|gb|ADI81793.1| cell division protein [Heliconius heurippa]
 gi|298400949|gb|ADI81794.1| cell division protein [Heliconius cydno cordula]
 gi|298400951|gb|ADI81795.1| cell division protein [Heliconius cydno cordula]
 gi|298400953|gb|ADI81796.1| cell division protein [Heliconius cydno cordula]
 gi|298400959|gb|ADI81799.1| cell division protein [Heliconius cydno cordula]
 gi|298400963|gb|ADI81801.1| cell division protein [Heliconius cydno cordula]
 gi|298400965|gb|ADI81802.1| cell division protein [Heliconius cydno cordula]
 gi|298400967|gb|ADI81803.1| cell division protein [Heliconius cydno cordula]
 gi|298400973|gb|ADI81806.1| cell division protein [Heliconius cydno cordula]
 gi|298400975|gb|ADI81807.1| cell division protein [Heliconius cydno cordula]
 gi|298400977|gb|ADI81808.1| cell division protein [Heliconius cydno cordula]
 gi|298400979|gb|ADI81809.1| cell division protein [Heliconius cydno cordula]
 gi|298400981|gb|ADI81810.1| cell division protein [Heliconius cydno cordula]
 gi|298400983|gb|ADI81811.1| cell division protein [Heliconius cydno cordula]
 gi|298400985|gb|ADI81812.1| cell division protein [Heliconius cydno cordula]
 gi|298400987|gb|ADI81813.1| cell division protein [Heliconius cydno cordula]
          Length = 273

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSN 92
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN
Sbjct: 7   DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSN 66

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G  
Sbjct: 67  TDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLH 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 127 DIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSS 186

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 187 RNSSIEAFVICQNYK 201


>gi|121715190|ref|XP_001275204.1| cell division protein ftsj [Aspergillus clavatus NRRL 1]
 gi|119403361|gb|EAW13778.1| cell division protein ftsj [Aspergillus clavatus NRRL 1]
          Length = 323

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 120/266 (45%), Gaps = 76/266 (28%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R + D + + A ++G ++R+A+KLLQI+EK++I ++ + +VDLG +PGSWSQV
Sbjct: 28  SSKRWQARQLRDQFTKAAAVQGLKSRAAFKLLQIDEKYRIFKNGQTVVDLGYAPGSWSQV 87

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD----SWEFIRQAIGGNP---- 136
           AA  T  N    RV+ +DI+  +P  GV   + +FLD +      EF+R    G P    
Sbjct: 88  AATRTQPNG---RVLGVDIIPAQPPKGVSTIQGNFLDPEIQAYVQEFLRDPQRGRPRALG 144

Query: 137 --------------------------------------------DLVLSDMAYP------ 146
                                                       D+VLSDM+ P      
Sbjct: 145 QFPAAMHHNQVLISTTINNSLLGERSEADLRIDSQNDHASGRTVDVVLSDMSAPWYQTTG 204

Query: 147 ---------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                          T G    DH  +M LC AA  F+ + L  GG F+ K +QG    D
Sbjct: 205 FWKRSLSDPYNRMMNTSGMSFRDHAGSMDLCRAALRFSYDTLKAGGHFVCKFYQGAEDKD 264

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVE 217
           +   LK  FQKV  +KP +SR  S +
Sbjct: 265 LEKQLKALFQKVHRIKPESSRTVSAQ 290


>gi|87162879|gb|ABD28674.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Medicago truncatula]
          Length = 316

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 88  ------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                     + N   +VAID+  M PI GV   + D  +  + E  IR   G   +LV+
Sbjct: 65  LPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKANLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209


>gi|324523982|gb|ADY48339.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 248

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 8/220 (3%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           R      K    +  +  ++ R + D +V +A+   +RARSA+KL++IN +++ +     
Sbjct: 25  RRFANNTKTAKKRAVTTKYIRRQLRDEFVLKAREHSYRARSAFKLIEINNRYKFINRGAV 84

Query: 71  IVDLGSSPGSWSQVAARIT-GSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFI 128
           +VD+GS+PGSW QV A +    +  +  V+ ID+  M P+ GV      D    ++   I
Sbjct: 85  VVDVGSAPGSWCQVIAELVHKEHHKDAYVLGIDLQPMVPLAGVDLITMADITSPETHRRI 144

Query: 129 RQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF-----ALEMLNIGGDFLVK 182
           +Q + G   D V+SDMA    G + +DH R ++LCE    F     A+  L  GG FL K
Sbjct: 145 KQYLSGRSVDAVVSDMAPNPSGDKTVDHERIIALCEQLLSFCCGNAAVIPLKKGGTFLCK 204

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
            + G     ++  LK +F  V ++KP ASR  S E++LLA
Sbjct: 205 IWDGQRRLQLIESLKGYFHIVHNIKPDASRDHSAELYLLA 244


>gi|315056971|ref|XP_003177860.1| ribosomal RNA methyltransferase MRM2 [Arthroderma gypseum CBS
           118893]
 gi|311339706|gb|EFQ98908.1| ribosomal RNA methyltransferase MRM2 [Arthroderma gypseum CBS
           118893]
          Length = 292

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 64/259 (24%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W +R   D Y + A ++G ++R+A+KLLQIN+++++ +S + +VDLG +PGSWSQV
Sbjct: 26  SSKQWQSRQGKDTYTKEAGMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQV 85

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------------ 132
           A  +T       RVV +DI+  +P  GV   + +FL     E+++  +            
Sbjct: 86  AFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQL 142

Query: 133 --------------------GGNPDLVLS----------DMAYP---------------- 146
                               GG  DL  S          ++A P                
Sbjct: 143 PTSSEQEESSPFTKPDTETDGGYIDLERSSSAHINKEGDEVAQPPNKAKVGSVDVVLSDM 202

Query: 147 ---TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G +  DHL +M LC+AA  FA  +L  GG F+ K +QG    +    LK+ F +V
Sbjct: 203 LMNTSGTKSRDHLGSMELCKAALDFASNVLKQGGHFVCKYYQGPGEKEFENELKRLFYRV 262

Query: 204 IHVKPVASRAESVEMFLLA 222
              KP +SR+ES E + + 
Sbjct: 263 YREKPDSSRSESKEAYFIG 281


>gi|291407431|ref|XP_002719910.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
          Length = 331

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ +   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -QVVAVDLQAMAPLPGVTQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|298400875|gb|ADI81757.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSN 92
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN
Sbjct: 7   DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRKNTSN 66

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G  
Sbjct: 67  TDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIQEFEGLKADLVVCDGAPDVTGLH 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 127 DIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSS 186

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 187 RNSSIEAFVICQNYK 201


>gi|325095423|gb|EGC48733.1| cell division cycle protein [Ajellomyces capsulatus H88]
          Length = 854

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 128/287 (44%), Gaps = 88/287 (30%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R   D Y + A ++G ++R+A+KLLQIN++++I +  + IVDLG +PGSWSQ
Sbjct: 552 SSSKRWQARQAKDKYSREAGVKGLKSRAAFKLLQINDRYKIFKPGQSIVDLGYAPGSWSQ 611

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR-------------- 129
           VA  +T  N    RVV +DI+  +P  GV   + +FL L    ++R              
Sbjct: 612 VAVDLTRPNG---RVVGVDIIPAQPPKGVSTIQGNFLSLQIQAYVREFLRNPNRGRAQSL 668

Query: 130 ------------------------------------QAIGGN---PD---------LVLS 141
                                               QA G N   PD         +VLS
Sbjct: 669 NHFKNADQRSQPKTDDEVEEIEGYIDRERSASSHITQADGANETIPDVAVGDKTVDVVLS 728

Query: 142 DMAYP---TIG---------HRKI---------DHLRTMSLCEAATFFALEMLNIGGDFL 180
           DM+ P   T G         +R++         DH  +M LC AA  F+  +L  GG F+
Sbjct: 729 DMSAPWEQTTGFWKKSLSDPYRRMMNTSGMGFRDHAGSMDLCRAALEFSFNVLKTGGHFV 788

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K +QG     +   LK+ FQ V   KP +SR+ES E + +  G R+
Sbjct: 789 CKFYQGAEDKALEKQLKELFQTVHREKPESSRSESKEAYFI--GLRR 833


>gi|145347186|ref|XP_001418056.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578284|gb|ABO96349.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 297

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 104/199 (52%), Gaps = 9/199 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------I 88
           D Y ++A+ EGWRARSA+KLLQI+E   I +  R +VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDESFDIFRDVRHVVDLCAAPGSWSQVLSRKLYLPALA 69

Query: 89  TGSNANN-TRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYP 146
            G       ++VAID+  M PI GV   + D   +D   E +    G + DL++ D A  
Sbjct: 70  RGVEEEELPKIVAIDLQPMAPIEGVTTIQGDITSMDKVREVLSHFDGKHADLIVGDGAPD 129

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  A    A  +L  GG F+ K F+G   + +   LK  F +V   
Sbjct: 130 VTGLHDLDEFMQAQLILAGLTVATHILKPGGTFIAKIFRGKDISLLYSQLKIFFPEVTCA 189

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F++ +G+
Sbjct: 190 KPKSSRNSSIEAFIVCQGY 208


>gi|303243749|ref|ZP_07330090.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanothermococcus
           okinawensis IH1]
 gi|302485991|gb|EFL48914.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanothermococcus
           okinawensis IH1]
          Length = 261

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +   D Y + A+   +R+R++YKLLQ+NEK  I++ N  +VDLG +PG W Q A  I
Sbjct: 8   WVLQRKRDFYYKLAKKNKYRSRASYKLLQLNEKFNIIKENDVVVDLGCAPGGWLQAARDI 67

Query: 89  TGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            G       V  +D+  ++P+    V   K D    ++ E + + +    D V+ D +  
Sbjct: 68  VGEGGF---VAGVDLQGVKPLKYENVIAIKGDMTKKETIEKLMKLLPSKADAVICDASPN 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G  + DH R++ L   A   A ++L   G+F+VK FQG   ND + LLK +F+KV   
Sbjct: 125 ISGVWERDHTRSLELTTIALITATKLLKKDGNFVVKVFQGSLFNDYVALLKNYFKKVQTT 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP ASR  S E++++ K F
Sbjct: 185 KPKASRDVSAEVYVVGKKF 203


>gi|302779940|ref|XP_002971745.1| hypothetical protein SELMODRAFT_95614 [Selaginella moellendorffii]
 gi|300160877|gb|EFJ27494.1| hypothetical protein SELMODRAFT_95614 [Selaginella moellendorffii]
          Length = 297

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 7/198 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR----ITGS 91
           D Y ++A+ EGWRARSA+KLLQI+E+  ILQ  +R+VDL ++PGSWSQV +R     + S
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFGILQGVKRVVDLCAAPGSWSQVLSRQLYVPSKS 69

Query: 92  NANNTR--VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
           +  + R  +VAID+  M PI GV   + D     + E + Q   G   DLV+ D A    
Sbjct: 70  DKQDDRPLIVAIDLQPMAPIDGVVQIQGDITSARTAELVIQHFHGCQADLVVCDGAPDVT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA      +L  G  F+ K F+G   + +   LK  F  V   KP
Sbjct: 130 GLHDMDEFVQAQLILAALTIVTHVLRPGAKFVAKVFRGKDISLLYAQLKMFFTTVTCTKP 189

Query: 209 VASRAESVEMFLLAKGFR 226
            +SR  S+E F++ + ++
Sbjct: 190 KSSRNSSIEAFVVCEDYQ 207


>gi|224286965|gb|ACN41184.1| unknown [Picea sitchensis]
          Length = 309

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKA 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           A  +R      +VAID+  M  I GV   + D     + E  I+   G   DLV+ D A 
Sbjct: 70  AAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F  V  
Sbjct: 130 DVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFFSTVTF 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP + R  S+E F + + +
Sbjct: 190 AKPKSGRNSSIEAFAVCENY 209


>gi|281353664|gb|EFB29248.1| hypothetical protein PANDA_006186 [Ailuropoda melanoleuca]
          Length = 320

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|149192156|ref|ZP_01870376.1| 23S rRNA methyltransferase J [Vibrio shilonii AK1]
 gi|148833996|gb|EDL51013.1| 23S rRNA methyltransferase J [Vibrio shilonii AK1]
          Length = 192

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 4/186 (2%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARRKGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
            AA++ G   +  +V+A D+L M+PI GV F + DF +      + + I  +  D+V+SD
Sbjct: 68  YAAKVLG---DEGQVIACDLLPMDPISGVSFLQGDFREEAVLNALLERIQPDMVDVVMSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G+  +D  R M L E A     + L  GG F+VK FQG   ++ +  ++  F+ 
Sbjct: 125 MAPNMAGNLSVDQPRAMYLVELALDMCHQTLAPGGSFVVKVFQGEGFDEYVKQVRDAFKV 184

Query: 203 VIHVKP 208
           V   KP
Sbjct: 185 VKIRKP 190


>gi|150403543|ref|YP_001330837.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C7]
 gi|189040314|sp|A6VJR0|RLME_METM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150034573|gb|ABR66686.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C7]
          Length = 258

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 17/205 (8%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A  I
Sbjct: 8   WVLQRKNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDI 67

Query: 89  TGSNANNTRVVAIDILDMEP-----ILGVKFFKFDFLDLDSWEFIRQA---IGGNPDLVL 140
            G       +V ID+  ++P     ++ +K       D+   E ++QA   +   PD+++
Sbjct: 68  VGEKGF---IVGIDLQTVKPLPYENVIAIKG------DMTKEEILKQAKDLLPEKPDVII 118

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D +    G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F
Sbjct: 119 CDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYF 178

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            K    KP ASR ES E++++ K F
Sbjct: 179 DKAFTTKPRASRDESAEVYVIGKRF 203


>gi|118097774|ref|XP_414772.2| PREDICTED: similar to cell division protein FtsJ [Gallus gallus]
          Length = 244

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 113/205 (55%), Gaps = 7/205 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA--- 85
           WL R   DP+V+ A+ + +R RSA+KLL+I++K  IL+    ++D G++PG+WSQVA   
Sbjct: 38  WLERQWRDPFVKAAKQQHYRCRSAFKLLEIDDKLHILRPGLSVLDCGAAPGAWSQVAVER 97

Query: 86  --ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-DLVLS 141
             A  T   A    V+ +D+L + P+ G  F  + D  D  +   I+  +     D++LS
Sbjct: 98  VNALGTDPAAPTGFVIGVDLLRISPLEGAVFLSQADITDPGTQRAIQNLLPAEKVDVILS 157

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G +++DH + +SLC      +  +L   G  L K + G  +  +   LK+ FQ
Sbjct: 158 DMAPNATGIKELDHQKLISLCLGLVNLSQSILKPKGTMLCKFWDGHESRVLQNKLKEQFQ 217

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V  +KP ASR +S E + LA+ ++
Sbjct: 218 DVRTIKPQASRKDSSESYYLARLYK 242


>gi|301764809|ref|XP_002917816.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like
           [Ailuropoda melanoleuca]
          Length = 329

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|134046035|ref|YP_001097521.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C5]
 gi|189040313|sp|A4FYM2|RLME_METM5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|132663660|gb|ABO35306.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanococcus maripaludis
           C5]
          Length = 258

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 17/205 (8%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A  I
Sbjct: 8   WVLQRKNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDI 67

Query: 89  TGSNANNTRVVAIDILDMEP-----ILGVKFFKFDFLDLDSWEFIRQA---IGGNPDLVL 140
            G       +V ID+  ++P     ++ +K       D+   E ++QA   +   PD+++
Sbjct: 68  VGDKG---FIVGIDLQTVKPLPYENVIAIKG------DMTKEEILKQARDLLPEKPDVII 118

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D +    G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F
Sbjct: 119 CDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYF 178

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            K    KP ASR ES E++++ K F
Sbjct: 179 DKAFTTKPRASRDESAEVYVIGKRF 203


>gi|298400955|gb|ADI81797.1| cell division protein [Heliconius cydno cordula]
 gi|298400957|gb|ADI81798.1| cell division protein [Heliconius cydno cordula]
 gi|298400961|gb|ADI81800.1| cell division protein [Heliconius cydno cordula]
 gi|298400969|gb|ADI81804.1| cell division protein [Heliconius cydno cordula]
 gi|298400971|gb|ADI81805.1| cell division protein [Heliconius cydno cordula]
          Length = 273

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSN 92
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN
Sbjct: 7   DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSN 66

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M  + GVK  + D   +  + E I++  G   DLV+ D A    G  
Sbjct: 67  TDDVKIVAVDLQAMAALPGVKQIQGDITKNSTAHEIIKEFEGLKADLVVCDGAPDVTGLH 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 127 DIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSS 186

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 187 RNSSIEAFVICQNYK 201


>gi|134282690|ref|ZP_01769393.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 305]
 gi|226196146|ref|ZP_03791731.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pakistan 9]
 gi|134245776|gb|EBA45867.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 305]
 gi|225931732|gb|EEH27734.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pakistan 9]
          Length = 199

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 10/196 (5%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--ITGSNANNTR-- 97
           AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A      G   +  R  
Sbjct: 2   AQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLAQGKRRDAVREG 61

Query: 98  -----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
                ++A+D+L MEP+  V F + DF +      + + + G   DLV+SDMA    G  
Sbjct: 62  GIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQLEEVLAGRAVDLVISDMAPNLSGVA 121

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R   +C+ A  FA   L   G  LVK F G   + I+   K  F+ V   KP AS
Sbjct: 122 VADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTVAPRKPKAS 181

Query: 212 RAESVEMFLLAKGFRK 227
           R +S E F+L +  ++
Sbjct: 182 RDKSSETFILGRHLKQ 197


>gi|74006842|ref|XP_862799.1| PREDICTED: similar to FtsJ homolog 1 isoform b isoform 2 [Canis
           familiaris]
          Length = 327

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSNVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|57111745|ref|XP_538022.1| PREDICTED: similar to Putative ribosomal RNA methyltransferase 1
           (rRNA (uridine-2-O-)-methyltransferase) (JM23 protein)
           isoform 1 [Canis familiaris]
          Length = 329

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSNVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|50303355|ref|XP_451619.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640751|emb|CAH02012.1| KLLA0B01980p [Kluyveromyces lactis]
          Length = 289

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 53/246 (21%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL R  ND + + A+ + +R+R+A+KL+ I++K++  + N++++DLG +PG+WSQVA + 
Sbjct: 33  WLARQKNDHFTKAAKEQQFRSRAAFKLMDIDDKYRFFKQNQKVLDLGFAPGAWSQVARKR 92

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR------------------- 129
            GS      ++ +D+L   P  GV   + + L   + E IR                   
Sbjct: 93  IGSGG---MIMGVDLLRCTPPKGVYSLQANILSKKTHELIRLCFARHIQLNKHDQLHKDH 149

Query: 130 ------------------------------QAIGGNP-DLVLSDMAYPTIGHRKIDHLRT 158
                                         Q I   P D+VLSDM   T G +  DH  +
Sbjct: 150 GYLQHMLEEELNHLKETEEYKELFSQTDISQNIERYPVDVVLSDMMANTTGIQSKDHYMS 209

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           M LC+AA   A+++L  GG F  K + G     +   LKK F+KV   KP ASR ES E+
Sbjct: 210 MDLCDAALIVAIDLLKPGGSFTCKLYAGSEDTLLEKRLKKVFKKVDRFKPNASRNESKEL 269

Query: 219 FLLAKG 224
           + +A+G
Sbjct: 270 YFVARG 275


>gi|159904677|ref|YP_001548339.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C6]
 gi|226703310|sp|A9A6B9|RLME_METM6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|159886170|gb|ABX01107.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C6]
          Length = 258

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 17/205 (8%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A  I
Sbjct: 8   WVLQRKNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDI 67

Query: 89  TGSNANNTRVVAIDILDMEP-----ILGVKFFKFDFLDLDSWEFIRQA---IGGNPDLVL 140
            G       +V ID+  ++P     ++ +K       D+   E ++QA   +   PD+++
Sbjct: 68  VGDKGF---IVGIDLQTVKPLPYENVIAIKG------DMTKEEILKQARDLLPEKPDVII 118

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D +    G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F
Sbjct: 119 CDASPNISGVWDVDHARSLELTTMALMTATKMLKRGGNFVVKVFQGDLFEKYVQLVSEYF 178

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            K    KP ASR ES E++++ K F
Sbjct: 179 DKAFTTKPRASRDESAEVYVIGKRF 203


>gi|291413885|ref|XP_002723197.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
          Length = 333

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 2/192 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PG WSQV ++ TG    
Sbjct: 9   HDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGGWSQVLSQKTGGQEG 68

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKI 153
             +V+A+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +
Sbjct: 69  G-QVLAVDLQAMAPLPGVTQIQGDITQLSTAKEIIQHFQGCPADLVVCDGAPDVTGLHDV 127

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR 
Sbjct: 128 DEYMQAQLLLAALNIATHVLKPGGCFMAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRN 187

Query: 214 ESVEMFLLAKGF 225
            S+E F + + +
Sbjct: 188 SSIEAFAVCQAY 199


>gi|260793442|ref|XP_002591721.1| hypothetical protein BRAFLDRAFT_80816 [Branchiostoma floridae]
 gi|229276930|gb|EEN47732.1| hypothetical protein BRAFLDRAFT_80816 [Branchiostoma floridae]
          Length = 303

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 5/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-AARITGSN-- 92
           D Y ++A+ EGWRARSA+KL+QI+E+  +L   +++VDL ++PGSWSQV + R+ G    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLMQIDEEFNVLSGVQKVVDLCAAPGSWSQVLSKRLRGEGKQ 69

Query: 93  -ANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGH 150
            +++ ++VA+D+  M PI GV   + D   + +  E I    G   DLV+ D A    G 
Sbjct: 70  KSDDVKIVAVDLQAMAPIPGVIQIQGDITKVSTAQEIIGHFSGEQADLVVCDGAPDVTGL 129

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +
Sbjct: 130 HDIDEYIQAQLLLAALNITTHVLKKGGGFVAKIFRGKDITLLYSQLKIFFPDVTVAKPRS 189

Query: 211 SRAESVEMFLLAKGF 225
           SR  S+E F++ +G+
Sbjct: 190 SRNSSIESFVVCRGY 204


>gi|90075218|dbj|BAE87289.1| unnamed protein product [Macaca fascicularis]
          Length = 299

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|322493017|emb|CBZ28302.1| putative FtsJ cell division protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 925

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 109/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+     A  
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---AIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML  GG F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKAGGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|109130592|ref|XP_001097658.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Macaca
           mulatta]
          Length = 329

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|147919157|ref|YP_687110.1| 23S rRNA methyltransferase J [uncultured methanogenic archaeon
           RC-I]
 gi|121685265|sp|Q0W1F9|RLME_UNCMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110622506|emb|CAJ37784.1| 23S rRNA methyltransferase J [uncultured methanogenic archaeon
           RC-I]
          Length = 256

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 5/190 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+  G+R+R+++KL  IN+KH I++    +VDLG++PG W QVA  + G     
Sbjct: 7   DHYYNKAKQMGYRSRASFKLQFINKKHHIIKKGDTVVDLGAAPGGWLQVAKELNGGG--- 63

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            +V+ +D+  +EPI GV+  K D    ++   I + +    D V+ D A    G+  +DH
Sbjct: 64  -KVIGVDLQRIEPIEGVETIKGDMTSPETQARIFEIV-DEVDTVICDAAPNLSGNWALDH 121

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R++ L   A   A ++L  GG+F+VK FQG    + +  + K F      K  ASR +S
Sbjct: 122 ARSIDLATVALDVATKLLKKGGNFVVKVFQGDLYENYVKEVGKRFSYATTYKSQASRQQS 181

Query: 216 VEMFLLAKGF 225
            E++++ KGF
Sbjct: 182 AEIYVIGKGF 191


>gi|298400891|gb|ADI81765.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 104/195 (53%), Gaps = 4/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV  +    N  N
Sbjct: 7   DIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTPN 66

Query: 96  T---RVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
           T   ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G  
Sbjct: 67  TDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLH 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +S
Sbjct: 127 DIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSS 186

Query: 212 RAESVEMFLLAKGFR 226
           R  S+E F++ + ++
Sbjct: 187 RNSSIEAFVICQNYK 201


>gi|150864104|ref|XP_001382804.2| Mitochondrial rRNA Methyltransferase [Scheffersomyces stipitis CBS
           6054]
 gi|149385360|gb|ABN64775.2| Mitochondrial rRNA Methyltransferase [Scheffersomyces stipitis CBS
           6054]
          Length = 263

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 25/228 (10%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQ 83
           SS  WLNR +NDP+ ++++ + +R+R+AYKL++I++K+ +  +    I+DLG +PG+W+Q
Sbjct: 27  SSTRWLNRQVNDPHTKQSKSDHYRSRAAYKLIEIDQKYSVFNRKTENILDLGFAPGAWTQ 86

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFK------------FDFLDLDSWEFIRQA 131
           VA          + ++ +D++      G  F +             DF      E ++++
Sbjct: 87  VAVERMKKLGVKSSILGVDLILSTAPKGSHFIQGNILSKKTHDDIRDFFTRKQSEIVKES 146

Query: 132 IGG------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            G               DLVLSDM   T G +  DH  +M LC+ A   A E+L  GG  
Sbjct: 147 EGSEIEIIDQKRKMLTVDLVLSDMMSNTSGIKDNDHYASMDLCDGAIILACEVLKEGGSL 206

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           ++K + G     +   ++  F+KV   KP A R ES EM+++  G ++
Sbjct: 207 VMKFYTGKEDQVLQERMRLLFEKVYRFKPQACRNESREMYIIGVGKKR 254


>gi|29029589|ref|NP_803183.1| putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
 gi|29029591|ref|NP_803188.1| putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
 gi|3511153|gb|AAC33734.1| cell division protein [Homo sapiens]
 gi|119571169|gb|EAW50784.1| FtsJ homolog 1 (E. coli), isoform CRA_b [Homo sapiens]
          Length = 327

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|225557686|gb|EEH05971.1| cell division cycle protein [Ajellomyces capsulatus G186AR]
          Length = 337

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 135/307 (43%), Gaps = 88/307 (28%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G S  R   + ++      SS+ W  R   D Y + A ++G ++R+A+KLLQIN++++
Sbjct: 15  PSGKSLGRKPRELIEISKRYSSSKRWQARQAKDKYSREAGVKGLKSRAAFKLLQINDRYK 74

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           I +  + +VDLG +PGSWSQVA  +T  N    RVV +DI+  +P  GV   + +FL L 
Sbjct: 75  IFKPGQSVVDLGYAPGSWSQVAVDLTQPNG---RVVGVDIIPAQPPKGVSTIQGNFLSLQ 131

Query: 124 SWEFIR--------------------------------------------------QAIG 133
              ++R                                                  QA G
Sbjct: 132 IQAYVREFLRNPNRGRAQSLNHFKNADQRSQPKTDDEVEEIEGYIDRERSASSHITQADG 191

Query: 134 GN---PD---------LVLSDMAYP---TIG---------HRKI---------DHLRTMS 160
            N   PD         +VLSDM+ P   T G         +R++         DH  +M 
Sbjct: 192 ANETIPDVAVGDKTVDVVLSDMSAPWEQTTGFWKKSLSDPYRRMMNTSGMSFRDHAGSMD 251

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LC AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + 
Sbjct: 252 LCRAALEFSFNVLKTGGHFVCKFYQGAEDKALEKQLKELFQTVHREKPESSRSESKEAYF 311

Query: 221 LAKGFRK 227
           +  G R+
Sbjct: 312 I--GLRR 316


>gi|195355564|ref|XP_002044261.1| GM15097 [Drosophila sechellia]
 gi|194129562|gb|EDW51605.1| GM15097 [Drosophila sechellia]
          Length = 321

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E  Q+L+   R VDL ++PGSWSQV A+     +T 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRMYEPLTP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
            +    +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A  + G
Sbjct: 70  EDREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V   KP 
Sbjct: 130 MHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVARKF 205


>gi|240274199|gb|EER37717.1| cell division cycle protein [Ajellomyces capsulatus H143]
          Length = 355

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 135/307 (43%), Gaps = 88/307 (28%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G S  R   + ++      SS+ W  R   D Y + A ++G ++R+A+KLLQIN++++
Sbjct: 33  PSGKSLGRKPRELIEISKRYSSSKRWQARQAKDKYSREAGVKGLKSRAAFKLLQINDRYK 92

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           I +  + IVDLG +PGSWSQVA  +T  N    RVV +DI+  +P  GV   + +FL L 
Sbjct: 93  IFKPGQSIVDLGYAPGSWSQVAVDLTRPNG---RVVGVDIIPAQPPKGVSTIQGNFLSLQ 149

Query: 124 SWEFIR--------------------------------------------------QAIG 133
              ++R                                                  QA G
Sbjct: 150 IQAYVREFLRNPNRGRAQSLNHFKNADQRSQPKTDDEVEEIEGYIDRERSASSHITQADG 209

Query: 134 GN---PD---------LVLSDMAYP---TIG---------HRKI---------DHLRTMS 160
            N   PD         +VLSDM+ P   T G         +R++         DH  +M 
Sbjct: 210 ANETIPDVAVGDKTVDVVLSDMSAPWEQTTGFWKKSLSDPYRRMMNTSGMSFRDHAGSMD 269

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LC AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + 
Sbjct: 270 LCRAALEFSFNVLKTGGHFVCKFYQGAEDKALEKQLKELFQTVHREKPESSRSESKEAYF 329

Query: 221 LAKGFRK 227
           +  G R+
Sbjct: 330 I--GLRR 334


>gi|7110661|ref|NP_036412.1| putative ribosomal RNA methyltransferase 1 isoform a [Homo sapiens]
 gi|12643879|sp|Q9UET6|RRMJ1_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase 1; AltName:
           Full=Protein ftsJ homolog 1; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase
 gi|3334739|emb|CAA06749.1| JM23 [Homo sapiens]
 gi|23270836|gb|AAH23584.1| FtsJ homolog 1 (E. coli) [Homo sapiens]
 gi|119571167|gb|EAW50782.1| FtsJ homolog 1 (E. coli), isoform CRA_a [Homo sapiens]
 gi|119571168|gb|EAW50783.1| FtsJ homolog 1 (E. coli), isoform CRA_a [Homo sapiens]
 gi|189054765|dbj|BAG37587.1| unnamed protein product [Homo sapiens]
 gi|307686265|dbj|BAJ21063.1| FtsJ homolog 1 [synthetic construct]
 gi|312151394|gb|ADQ32209.1| FtsJ homolog 1 (E. coli) [synthetic construct]
          Length = 329

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|83767093|dbj|BAE57233.1| unnamed protein product [Aspergillus oryzae]
          Length = 296

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 54/252 (21%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R + D + + A  +G ++R+A+KL+QI+ K++I ++ + +VDLG +PGSWSQV
Sbjct: 29  SSKRWQARQLKDHFTREATAQGLKSRAAFKLIQIDAKYRIFRNGQTVVDLGYAPGSWSQV 88

Query: 85  ---AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG------- 134
              A  +T     N RV+ +DI+  +P  GV   + +FLD     +++  +         
Sbjct: 89  RQLAINLTLRTGPNGRVLGVDIIPAQPPKGVFTIQGNFLDPSIQAYVQNFLHNPTRDQQH 148

Query: 135 -------------------NP------------------DLVLSDM-------AYPTIGH 150
                              NP                  D+VLSD+          T G 
Sbjct: 149 RPGISPHVSLSHETSEDTKNPIHNCKEMEELCLTGKRTVDVVLSDILSDLCNRMMNTSGM 208

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              DH  +M LC AA  F+ E+L  GG F+ K +QG    D+   LK+ FQKV  +KP +
Sbjct: 209 SFRDHAGSMDLCRAALQFSFEVLKAGGHFVCKFYQGAEDKDLEKQLKRLFQKVHRLKPES 268

Query: 211 SRAESVEMFLLA 222
           SR ES E + + 
Sbjct: 269 SRNESKEAYFIG 280


>gi|194900526|ref|XP_001979808.1| GG21940 [Drosophila erecta]
 gi|190651511|gb|EDV48766.1| GG21940 [Drosophila erecta]
          Length = 300

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 105/198 (53%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R       T
Sbjct: 10  DIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDACET 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPT 147
                  +++A+D+  M PI G+   + D     + E I    GGN    LV+ D A   
Sbjct: 70  DDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIISHFGGNEKAQLVVCDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    K
Sbjct: 130 TGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  GF
Sbjct: 190 PPSSRPSSIEAFVVCSGF 207


>gi|262094385|gb|ACY09322.1| cell division protein [Heliconius melpomene rosina]
 gi|262094435|gb|ACY09347.1| cell division protein [Heliconius melpomene rosina]
          Length = 253

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 4/189 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDXVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGFR 226
            F++ + ++
Sbjct: 184 AFVICQNYK 192


>gi|303249142|ref|ZP_07335382.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           fructosovorans JJ]
 gi|302489467|gb|EFL49414.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           fructosovorans JJ]
          Length = 222

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y ++A+ + + ARS YKL +I ++  +L     ++DLG+ PGSW+  AA   G 
Sbjct: 2   KTYRDHYFKKAKQDNYPARSVYKLEEIEKQSHLLFPGAAVLDLGACPGSWTLFAASRVGE 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                RV++ID+ +        V +   D LD         A  G  D+VLSDMA  T G
Sbjct: 62  KG---RVLSIDLNEAGTAFPGNVTYLTGDMLDPGPEILAAFARLGPFDVVLSDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ LCEAA   A   L  GG F+VK FQG         L+ +F KV   KP 
Sbjct: 119 VKFADQARSLELCEAALSVAFTRLKPGGAFVVKIFQGPDAPAFQKGLRDYFDKVRVAKPK 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SRAES E+F +A GFR
Sbjct: 179 SSRAESKEIFYVATGFR 195


>gi|262094425|gb|ACY09342.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 4/189 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDHVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGFR 226
            F++ + ++
Sbjct: 184 AFVICQNYK 192


>gi|48477697|ref|YP_023403.1| FtsJ-like methyltransferase [Picrophilus torridus DSM 9790]
 gi|74567879|sp|Q6L1E2|RLME_PICTO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|48430345|gb|AAT43210.1| FtsJ-like methyltransferase [Picrophilus torridus DSM 9790]
          Length = 194

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ E +R+R++YK+++IN K+ I+     +++ GSSPG W+QV   IT S    
Sbjct: 5   DKYYIRAKRENYRSRASYKIIEINNKYNIVSRGDNVLEFGSSPGGWTQVIENITQS---- 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGHR 151
             ++A+DI  M+P+    F K +  D D ++ I  A+  N     D +LSD    T G  
Sbjct: 61  -VIIAVDINRMDPVKNTVFIKMNIFDDDIFKSIDHAMAENNIKNFDSILSDAMSRTSGIE 119

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             DH  +  +CE     ++  L  GG+ ++K FQG  TN+ +     +F      KP AS
Sbjct: 120 DRDHYNSYKICERVMDISIPRLKNGGNIILKQFQGDMTNEFIKKWSGYFNYYKITKPKAS 179

Query: 212 RAESVEMFLL 221
           R  S E++++
Sbjct: 180 RQHSREIYII 189


>gi|195390727|ref|XP_002054019.1| GJ23026 [Drosophila virilis]
 gi|194152105|gb|EDW67539.1| GJ23026 [Drosophila virilis]
          Length = 313

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 10/201 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR------IT 89
           D Y ++A+ EGWRARSA+KL+ INE+  IL   RR VDL ++PGSWSQV +R      +T
Sbjct: 10  DIYYRQAKEEGWRARSAFKLMHINEQFGILNDVRRAVDLCAAPGSWSQVLSRKLFDSCLT 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAY 145
               +  +++A+D+  M PI GV   + D     + E I    G + D    LV+ D A 
Sbjct: 70  DDEKSEVKIIAVDLQAMAPIRGVIQLQGDITKESTAEAIIAHFGNDADQKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  +A   A  +L  GG F+ K F+G   + +   +   F+    
Sbjct: 130 DVTGVHEMDEYMQNQLIVSALSIATFVLETGGTFVAKIFKGNANSLLESQMLTFFENFHI 189

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S+E F++  GFR
Sbjct: 190 YKPPSSRPSSIEAFVVCTGFR 210


>gi|224004992|ref|XP_002296147.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|209586179|gb|ACI64864.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 282

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 130/259 (50%), Gaps = 44/259 (16%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           S RG   + + R+ + SSR WL R   DPYV +A+ EG  +R+++KL +INE+    Q  
Sbjct: 26  SIRGKHSQSQGRNIKQSSRTWLERQQKDPYVHQAKKEGLPSRASFKLKEINEETNTPQPK 85

Query: 69  RRI------VDLGSSPGSWSQVAA-RITGSNANNTRVVAIDILDMEP---ILG------- 111
           R I      +DLG++PG WS  A+ ++  S      VVA+D+L +     ++G       
Sbjct: 86  RLIAPNMLVLDLGAAPGGWSLYASTQLVASQGG--AVVAVDLLPLSTEGDVIGRIENNLH 143

Query: 112 --VKFFKFDFLDLDSWEFIRQA---IGGN---PDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
               F + DF +    + I  +   + GN   P L++SDMA    G  K D L+T++LCE
Sbjct: 144 GQFTFIQGDFTEKHVRDDIMDSFAQLSGNQTLPGLIVSDMAPHFTGDTKTDALQTINLCE 203

Query: 164 AATFFAL---------------EMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHV 206
            A  FA+                 L  GG FL K F  G  N  D++  +K+ F+ V  +
Sbjct: 204 QALTFAVGDDCFDNSYSPRDAKGTLASGGSFLCKYFSCGKENELDLMEAIKRAFRSVHVL 263

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP ASR ES EM+LL   F
Sbjct: 264 KPKASRKESSEMYLLGLDF 282


>gi|262094381|gb|ACY09320.1| cell division protein [Heliconius melpomene rosina]
 gi|262094383|gb|ACY09321.1| cell division protein [Heliconius melpomene rosina]
 gi|262094387|gb|ACY09323.1| cell division protein [Heliconius melpomene rosina]
 gi|262094389|gb|ACY09324.1| cell division protein [Heliconius melpomene rosina]
 gi|262094391|gb|ACY09325.1| cell division protein [Heliconius melpomene rosina]
 gi|262094393|gb|ACY09326.1| cell division protein [Heliconius melpomene rosina]
 gi|262094395|gb|ACY09327.1| cell division protein [Heliconius melpomene rosina]
 gi|262094397|gb|ACY09328.1| cell division protein [Heliconius melpomene rosina]
 gi|262094399|gb|ACY09329.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094403|gb|ACY09331.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094405|gb|ACY09332.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094411|gb|ACY09335.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094415|gb|ACY09337.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094417|gb|ACY09338.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094419|gb|ACY09339.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094421|gb|ACY09340.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094423|gb|ACY09341.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094427|gb|ACY09343.1| cell division protein [Heliconius melpomene rosina]
 gi|262094429|gb|ACY09344.1| cell division protein [Heliconius melpomene rosina]
 gi|262094431|gb|ACY09345.1| cell division protein [Heliconius melpomene rosina]
 gi|262094433|gb|ACY09346.1| cell division protein [Heliconius melpomene rosina]
          Length = 253

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 4/189 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGFR 226
            F++ + ++
Sbjct: 184 AFVICQNYK 192


>gi|302819760|ref|XP_002991549.1| hypothetical protein SELMODRAFT_133851 [Selaginella moellendorffii]
 gi|300140582|gb|EFJ07303.1| hypothetical protein SELMODRAFT_133851 [Selaginella moellendorffii]
          Length = 302

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 12/203 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y ++A+ EGWRARSA+KLLQI+E+  ILQ  +R+VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDEEFGILQGVKRVVDLCAAPGSWSQVLSRQLYVPSKN 69

Query: 88  ---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDM 143
               +    +   +VAID+  M PI GV   + D     + E + Q   G   DLV+ D 
Sbjct: 70  LSLCSSRQDDRPLIVAIDLQPMAPIDGVVQIQGDITSARTAELVIQHFHGCKADLVVCDG 129

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L  G  F+ K F+G   + +   LK  F  V
Sbjct: 130 APDVTGLHDMDEFVQAQLILAALTIVTHVLRPGAKFVAKVFRGKDISLLYAQLKMFFTTV 189

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S+E F++ + ++
Sbjct: 190 TCTKPKSSRNSSIEAFVVCEDYQ 212


>gi|167526100|ref|XP_001747384.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774219|gb|EDQ87851.1| predicted protein [Monosiga brevicollis MX1]
          Length = 302

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-AARITGSNAN 94
           D Y ++A+ EG+RARSA+KLLQ++E+  I ++  R+VDL ++PGSWSQV + ++  +  +
Sbjct: 10  DIYYRQAKEEGYRARSAFKLLQLDEEFDIFRNVERVVDLCAAPGSWSQVLSQKLRPTEND 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             ++VA+D+  M P+ GV   + D   +  + E ++   GG  DLV+SD A    G   I
Sbjct: 70  RVKIVAVDLQAMAPLPGVIQMQGDITKEATAQEIVQHFDGGYADLVVSDGAPDVTGLHDI 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  AA   +  +L  GG F+ K F+G     +   L+  F  V   KP +SR 
Sbjct: 130 DEYVQSQLILAALNISTHVLKRGGTFIAKIFRGRDVQLLYAQLETFFDVVTCSKPRSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S+E F++  G+
Sbjct: 190 SSIEAFVVCVGY 201


>gi|301123027|ref|XP_002909240.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
 gi|262100002|gb|EEY58054.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
          Length = 881

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 6/196 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y   A+ +G+RARSA+KL+Q+N+K+  L + +  +DL ++PG W QVAA+   +
Sbjct: 6   KHDKDKYYNLARQQGYRARSAFKLIQLNKKYDFLSTAKVCIDLCAAPGGWCQVAAKYMPA 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG- 149
              ++ ++ ID+L + PI GVK F+ D   +   + I+Q +     D+VL D A P +G 
Sbjct: 66  ---SSIILGIDLLPIRPIRGVKTFQCDITTVRCRQIIKQEMQSWQADVVLCDGA-PNVGT 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L   A   A++++  GG F+ K F+    N +L + K+ F+KV   KP+
Sbjct: 122 EYSKDAYVQNELALIALKLAVDVMGRGGTFVSKVFRSQDYNALLWVFKQLFKKVSATKPL 181

Query: 210 ASRAESVEMFLLAKGF 225
           +SR ES E+F++ + F
Sbjct: 182 SSRNESAEIFVVCEQF 197


>gi|218780797|ref|YP_002432115.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum
           alkenivorans AK-01]
 gi|254809549|sp|B8FL12|RLME_DESAA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|218762181|gb|ACL04647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum
           alkenivorans AK-01]
          Length = 207

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 117/189 (61%), Gaps = 7/189 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +AQ  G+ ARS +KL ++ ++ +IL+  ++++DLG +PGSW + A++I G   ++
Sbjct: 13  DHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIVG---DS 69

Query: 96  TRVVAIDI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            RV+ +D+  +D       +F + D  +L + EF+ + IG + D+VLSDMA  T G + +
Sbjct: 70  GRVIGLDLKPMDQPDKPNAQFIQGDAFEL-TQEFLDE-IGRDFDVVLSDMAPNTTGIKNV 127

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D L++ +LCE+A   A+ +L  GG F+ K FQG   +  +  +KK+F K    KP ++R 
Sbjct: 128 DALKSAALCESALAAAVTVLKPGGSFVCKIFQGEGFDAFIKDVKKYFTKHKIFKPESTRK 187

Query: 214 ESVEMFLLA 222
           +S E++++ 
Sbjct: 188 QSREIYVVG 196


>gi|321438509|emb|CBZ12268.1| putative FtsJ cell division protein [Leishmania major strain
           Friedlin]
          Length = 924

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+     A  
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---AIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|73544523|ref|XP_848156.1| FtsJ cell division protein [Leishmania major strain Friedlin]
          Length = 924

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+     A  
Sbjct: 14  DAYYRLAKGQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---AIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|224146194|ref|XP_002325916.1| predicted protein [Populus trichocarpa]
 gi|222862791|gb|EEF00298.1| predicted protein [Populus trichocarpa]
          Length = 316

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV------ 84
           +R   D Y ++A+ EGWRARSA+KL+QI+E+  I +  +R+VDL ++PGSWSQV      
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLIQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 85  -AARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
             A+++  + +N    +VAID+  M  I GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLSPDSRDNDLPLIVAIDLQPMALIEGVIQVQGDITNARTAEVVIRHFDGSKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209


>gi|189239587|ref|XP_975693.2| PREDICTED: similar to Putative ribosomal RNA methyltransferase 1
           (rRNA (uridine-2-O-)-methyltransferase) [Tribolium
           castaneum]
          Length = 360

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 2/198 (1%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
            +R   D + ++A+ +GWRARSA+KLLQI+EK  IL+   + VDL ++PGSWSQV ++  
Sbjct: 4   FSRDRRDIFYRKAKEQGWRARSAFKLLQIDEKFNILEGVTKAVDLCAAPGSWSQVLSQTP 63

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPTI 148
             N  + ++VA+D+  M P+ GV   + D  +  + E  I    G + DLV+ D A    
Sbjct: 64  QKN-KDVKIVAVDLQPMSPLPGVIQLQGDITEYKTAEAIISHFEGDHADLVVCDGAPDVT 122

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID      L   A      +L  GG F+ K F+    + +   L   F+ VI VKP
Sbjct: 123 GLHCIDIYIQAQLLLGALHITCNVLKPGGTFVAKIFRAKDCDLLTQQLLMLFEDVITVKP 182

Query: 209 VASRAESVEMFLLAKGFR 226
            +SR  S+E F++ + F+
Sbjct: 183 TSSRNSSIEAFVVCRKFK 200


>gi|262094413|gb|ACY09336.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 4/189 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA       L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHXLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGFR 226
            F++ + ++
Sbjct: 184 AFVICQNYK 192


>gi|322500269|emb|CBZ35347.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 925

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+     A  
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---AIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|146091082|ref|XP_001466438.1| FtsJ cell division protein [Leishmania infantum JPCM5]
 gi|134070800|emb|CAM69158.1| putative FtsJ cell division protein [Leishmania infantum JPCM5]
          Length = 925

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+     A  
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---AIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|289581714|ref|YP_003480180.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrialba magadii ATCC
           43099]
 gi|289531267|gb|ADD05618.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrialba magadii ATCC
           43099]
          Length = 273

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 21/207 (10%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ EG+R+R+AYKL Q+++   ++     +VDLG++PG W +VAA   G     
Sbjct: 5   DHYYNKAKQEGYRSRAAYKLKQLDQLENVISGGDTVVDLGAAPGGWLEVAAEAVGPQG-- 62

Query: 96  TRVVAID---ILDMEPILGVKFFKFDFL--------------DLDSWEFIRQAIGGNP-D 137
            +V+ +D   I D +    ++  + D                D++S E    A  G P D
Sbjct: 63  -QVIGVDLQRIRDFDDHDTIETLRGDMTEERTRERVIEAAGGDVESAETATDAGTGGPVD 121

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R++ L   A   ALE+L   GDF+VK F+G   +D    ++
Sbjct: 122 VVISDMAPNMSGEYSLDQARSLHLARQAFETALELLATDGDFIVKVFEGPDVDDFRADVE 181

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKG 224
           + FQ V    P ASR ES E++ + KG
Sbjct: 182 EEFQYVRATSPKASRDESSEIYFIGKG 208


>gi|262094407|gb|ACY09333.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 101/188 (53%), Gaps = 4/188 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTXHEIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHVLKEGGVFVAKIFRGKDXTLLYSQLKLFFDYVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGF 225
            F++ + +
Sbjct: 184 AFVICQNY 191


>gi|148826967|ref|YP_001291720.1| cell division protein [Haemophilus influenzae PittGG]
 gi|148718209|gb|ABQ99336.1| cell division protein [Haemophilus influenzae PittGG]
          Length = 195

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 6/194 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARITGSNA 93
           +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++PG WSQ V ++I G   
Sbjct: 5   SDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAAPGGWSQYVVSQIGGKG- 63

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
              RV+A DIL+M PI+GV F + DF D +    +   +G +  D+V+SDMA    G   
Sbjct: 64  ---RVIACDILEMAPIVGVDFLQGDFRDENVLNALLARVGEDKVDVVMSDMAPNFSGMPS 120

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R M L E A     ++L   G F+VK FQG   ++ L  ++  F  V   KP ASR
Sbjct: 121 VDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLREIRSLFNVVKVRKPEASR 180

Query: 213 AESVEMFLLAKGFR 226
             S E++++A G++
Sbjct: 181 GRSREVYIVATGYK 194


>gi|195570241|ref|XP_002103117.1| GD19132 [Drosophila simulans]
 gi|194199044|gb|EDX12620.1| GD19132 [Drosophila simulans]
          Length = 302

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y + A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R       T
Sbjct: 10  DIYYRLAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDTCET 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPT 147
                  +++A+D+  M PI G+   + D     + E I    GGN    LV+ D A   
Sbjct: 70  DDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    K
Sbjct: 130 TGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  GF
Sbjct: 190 PPSSRPSSIEAFVVCSGF 207


>gi|242765533|ref|XP_002340993.1| ftsj, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724189|gb|EED23606.1| ftsj, putative [Talaromyces stipitatus ATCC 10500]
          Length = 814

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 125/272 (45%), Gaps = 76/272 (27%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W +R  +D + + A + G ++R+A+KLLQI+E+++I +  + +VDLG +PGSWSQ
Sbjct: 530 SSSKRWQSRQRSDIFTREAVVRGLKSRAAFKLLQIDEQYRIFRRGQTVVDLGYAPGSWSQ 589

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--DLDSW--EFIRQAIGGNP--- 136
           VA   T  N    RV+ +DI+  +P  GV   + +FL  D+  +  EF+R    G P   
Sbjct: 590 VAVTRTKPNG---RVLGVDIIPAQPPKGVSTIQGNFLSPDIQEYVLEFVRDPNRGRPRLP 646

Query: 137 ---------------------------------------------DLVLSDMAYP----- 146
                                                        D+VLSDM+ P     
Sbjct: 647 TLSPEEPGRIAADDDSTVLEALSESAVTASEKGKEENGLQKERTVDVVLSDMSAPWAQVK 706

Query: 147 -------TIGHRKI---------DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                  +  +R++         DH  +M LC AA  F+  +L  GG F+ K +QG    
Sbjct: 707 GFSNRSLSNPYRRMMNTSGISFRDHAGSMDLCRAALQFSFNVLKPGGHFVCKFYQGPEDK 766

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
                LK  F+KV  +KP +SR+ES E F +A
Sbjct: 767 VFEKQLKALFEKVHRLKPESSRSESREAFFVA 798


>gi|224809482|ref|NP_001007385.2| FtsJ homolog 1 [Danio rerio]
          Length = 323

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSN-A 93
           D Y + A+ EGWRARSA+KLLQ++E+ ++ +   R VDL ++PGSWSQV +R + G + +
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLRGKDKS 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              ++VA+D+  M P+ GV   + D   + +  E IR   G + DLV+ D A    G   
Sbjct: 70  EEVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA      +L  GG+F+ K F+G     +   LK  F  V   KP +SR
Sbjct: 130 VDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAKPPSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ + +
Sbjct: 190 NSSIEAFVVCQNY 202


>gi|157423575|gb|AAI53565.1| FtsJ homolog 1 (E. coli) [Danio rerio]
          Length = 323

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSN-A 93
           D Y + A+ EGWRARSA+KLLQ++E+ ++ +   R VDL ++PGSWSQV +R + G + +
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLRGKDKS 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              ++VA+D+  M P+ GV   + D   + +  E IR   G + DLV+ D A    G   
Sbjct: 70  EEVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA      +L  GG+F+ K F+G     +   LK  F  V   KP +SR
Sbjct: 130 VDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAKPPSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ + +
Sbjct: 190 NSSIEAFVVCQNY 202


>gi|55250314|gb|AAH85449.1| FtsJ homolog 1 (E. coli) [Danio rerio]
 gi|182890610|gb|AAI64849.1| Ftsj1 protein [Danio rerio]
          Length = 323

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSN-A 93
           D Y + A+ EGWRARSA+KLLQ++E+ ++ +   R VDL ++PGSWSQV +R + G + +
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDEEFKLFRGVSRAVDLCAAPGSWSQVLSRKLRGKDKS 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              ++VA+D+  M P+ GV   + D   + +  E IR   G + DLV+ D A    G   
Sbjct: 70  EEVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA      +L  GG+F+ K F+G     +   LK  F  V   KP +SR
Sbjct: 130 VDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAKPPSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ + +
Sbjct: 190 NSSIEAFVVCQNY 202


>gi|126179410|ref|YP_001047375.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoculleus
           marisnigri JR1]
 gi|158513234|sp|A3CVJ3|RLME_METMJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|125862204|gb|ABN57393.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanoculleus marisnigri
           JR1]
          Length = 203

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 5/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D   ++A   G+RAR+AYKLL+I +++ I++ +  +VDLG++PGSW QV   +T     +
Sbjct: 8   DSVYRKAMKAGYRARAAYKLLEIQQRNGIIRPDDNVVDLGAAPGSWLQVLRDLT-----D 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            RV+ +D+  + P+ GV     DF D    E IR+  GG   +V+SD +    G +  D 
Sbjct: 63  GRVIGVDLNPIAPMEGVTTIVGDFTDPLVQERIREEAGGVVSVVVSDASPKLSGQKSYDQ 122

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R + L E A  FA  +L  GG+ ++K+FQG    +++   +KHF  V   +  ASR  S
Sbjct: 123 ARAIGLGEDALAFACTVLKPGGNMVIKSFQGELFGELIAETRKHFYSVRGYRTKASRKGS 182

Query: 216 VEMFLLAKGFR 226
            E +++AK F+
Sbjct: 183 AETYIIAKNFK 193


>gi|292654359|ref|YP_003534256.1| ribosomal RNA large subunit methyltransferase J [Haloferax volcanii
           DS2]
 gi|291372926|gb|ADE05153.1| ribosomal RNA large subunit methyltransferase J [Haloferax volcanii
           DS2]
          Length = 259

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ EG+RARSAYKL Q++    +      +VDLG++PG W QV +   G   ++
Sbjct: 5   DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVVSEEVG---DH 61

Query: 96  TRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK 152
            +VV +D+  +  I    V+  + D  + ++ E +   IG    D V+SDMA    G   
Sbjct: 62  GKVVGVDLQRIRGIDRDNVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTGEYS 121

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH R++ L   A   A E+L  GGDF VK F G    D+   +++ FQ V  ++P ASR
Sbjct: 122 LDHARSVYLARQAFEVAQELLATGGDFAVKVFDGPDVADLRADMEREFQYVRSMRPDASR 181

Query: 213 AESVEMFLLAKGF 225
             S E +L+ K F
Sbjct: 182 DSSSEQYLVGKHF 194


>gi|146180987|ref|XP_001021884.2| FtsJ-like methyltransferase family protein [Tetrahymena
           thermophila]
 gi|146144344|gb|EAS01639.2| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
           SB210]
          Length = 329

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 103/195 (52%), Gaps = 8/195 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------I 88
           D Y ++A+ + +RARSAYKLLQI+E   I ++  R++DL ++PGSWSQV ++        
Sbjct: 75  DIYYRKAKEDCFRARSAYKLLQIDEVFGIFENAERVIDLCAAPGSWSQVVSKKLTEKGLF 134

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
             SN  + R+++ID+ +M PI  V   + D    ++ + I     GN  +LV+ D A   
Sbjct: 135 KDSNGEDVRIISIDLQEMAPIDNVVQLQGDITKKETVDEILHKFKGNKANLVIDDGAPDV 194

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  AA     E L  GG F+ K F+G     +    K  F+ V  VK
Sbjct: 195 TGFHDIDQYLQSQLMVAALNICNETLKKGGHFVAKIFKGTDIKFLYSQFKLFFKSVYVVK 254

Query: 208 PVASRAESVEMFLLA 222
           P +SRA SVE FL+ 
Sbjct: 255 PKSSRASSVENFLVC 269


>gi|212528768|ref|XP_002144541.1| cell division protein ftsj, putative [Penicillium marneffei ATCC
           18224]
 gi|210073939|gb|EEA28026.1| cell division protein ftsj, putative [Penicillium marneffei ATCC
           18224]
          Length = 846

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 126/269 (46%), Gaps = 73/269 (27%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W +R  +D + + A + G ++R+A+KLL+I+E+++I +S + +VDLG +PGSWSQ
Sbjct: 565 SSSKRWQSRQRSDMFTREAVVRGLKSRAAFKLLEIDEQYRIFRSGQTVVDLGYAPGSWSQ 624

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--DLDSW--EFIRQAIGGNP--- 136
           VA   T  N    RV+ +DI+  +P  GV   + +FL  ++  +  EF+R    G P   
Sbjct: 625 VAVTRTKPNG---RVLGVDIIPAQPPKGVSTIQGNFLSPNIQEYVLEFVRDPDRGRPRLP 681

Query: 137 ------------------------------------------DLVLSDMAYP-------- 146
                                                     D+VLSDM+ P        
Sbjct: 682 APPVDEAEHLTADNDATILRESSAAGNDKGKEENGKQKERTVDVVLSDMSAPWAQVQGFS 741

Query: 147 ----TIGHRKI---------DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
               +  +R++         DH  +M LC AA  F+  +L  GG F+ K +QG       
Sbjct: 742 NRSLSNPYRRMMNTSGIAFRDHAGSMDLCRAALQFSFNVLKAGGHFVCKFYQGPEDKLFE 801

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLA 222
             LK  F+KV  +KP +SR+ES E F +A
Sbjct: 802 KQLKALFEKVHRLKPESSRSESREAFFVA 830


>gi|303275988|ref|XP_003057288.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461640|gb|EEH58933.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 343

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 104/200 (52%), Gaps = 9/200 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-------AARI 88
           D Y ++A+ EGWRARSA+KLLQI++   + +  + +VDL ++PGSWSQV        AR 
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDDSFDVFKDVKHVVDLCAAPGSWSQVISRRLWIPARD 69

Query: 89  TGSNANN-TRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYP 146
            G+ A +  ++VAID+  M PI GV   + D   L    E +    G   DL++SD A  
Sbjct: 70  AGTAAEDMPKIVAIDLQPMAPIEGVVQIQGDITSLAKVNEVLTHFEGKLADLIVSDGAPD 129

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  A       +L  GG ++ K F+G     +   LK  F +V   
Sbjct: 130 VTGLHDMDEFMQAQLILAGLAVCAHILRPGGTYIAKVFRGKDVALLYAQLKMFFTQVTCA 189

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  SVE F++ + FR
Sbjct: 190 KPKSSRNSSVEAFVVCQDFR 209


>gi|262094401|gb|ACY09330.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 4/188 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA       L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHXLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGF 225
            F++ + +
Sbjct: 184 AFVICQNY 191


>gi|24647580|ref|NP_650590.1| CG5220 [Drosophila melanogaster]
 gi|9910870|sp|Q9VEP1|RMJ1A_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG5220;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7300216|gb|AAF55380.1| CG5220 [Drosophila melanogaster]
 gi|25012244|gb|AAN71236.1| LD21957p [Drosophila melanogaster]
 gi|220943874|gb|ACL84480.1| CG5220-PA [synthetic construct]
 gi|220953752|gb|ACL89419.1| CG5220-PA [synthetic construct]
          Length = 302

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R       T
Sbjct: 10  DIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDTCET 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPT 147
               +  +++A+D+  M PI G+   + D     + E I    GGN    LV+ D A   
Sbjct: 70  DDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    K
Sbjct: 130 TGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++   F
Sbjct: 190 PPSSRPSSIEAFVVCSDF 207


>gi|301111504|ref|XP_002904831.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
 gi|262095161|gb|EEY53213.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
          Length = 256

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 8/199 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------I 88
           D Y ++A+  G+RARSA+KLLQ++E+   L++ +R VDL ++PGSWSQV +R       +
Sbjct: 10  DIYYRKAKEVGFRARSAFKLLQLDEQFDFLRNVQRAVDLCAAPGSWSQVLSRKLYDASNV 69

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPT 147
              ++++ R++++D+ +M PI GV+  + D     + E  I    G    +V+SD A   
Sbjct: 70  QSVDSDDVRIMSVDLQEMAPIAGVQLLQGDITSKRTAEQIISHFHGAKAQVVVSDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  AA      +L  GG F+ K F+    + +   L   F+ V   K
Sbjct: 130 TGVHDIDEFVQAELLAAALNITTHVLEEGGAFVAKIFRCEQYDLLATQLSVFFESVSCSK 189

Query: 208 PVASRAESVEMFLLAKGFR 226
           P++SRA+S E F++ +GFR
Sbjct: 190 PMSSRAQSNEAFVVCQGFR 208


>gi|55726462|emb|CAH90000.1| hypothetical protein [Pongo abelii]
          Length = 319

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+   A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCGGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|24648639|ref|NP_650947.1| CG7009 [Drosophila melanogaster]
 gi|9910868|sp|Q9VDD9|RMJ1B_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG7009;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7300710|gb|AAF55857.1| CG7009 [Drosophila melanogaster]
          Length = 320

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E  Q+L+   R VDL ++PGSWSQV A+     +  
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRLYEPLPP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A  + G
Sbjct: 70  EEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V   KP 
Sbjct: 130 MHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKNVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVAREF 205


>gi|268575120|ref|XP_002642539.1| Hypothetical protein CBG20162 [Caenorhabditis briggsae]
          Length = 331

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 1/193 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+   R VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +++  + I    G   D+V+ D A    G
Sbjct: 65  EEDEKAKIVAIDLQPMAPIPGVIQLQGDITSVETANQVIEHFSGEKADIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +K++F++V   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLKNGGNFLAKIFRSRNSSLLYAQMKRYFKQVYLAKPR 184

Query: 210 ASRAESVEMFLLA 222
           +SR  S E F+L 
Sbjct: 185 SSRQSSCEAFVLC 197


>gi|21430814|gb|AAM51085.1| SD16956p [Drosophila melanogaster]
          Length = 324

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E  Q+L+   R VDL ++PGSWSQV A+     +  
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRLYEPLPP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A  + G
Sbjct: 70  EEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V   KP 
Sbjct: 130 MHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVAREF 205


>gi|195349217|ref|XP_002041143.1| GM15199 [Drosophila sechellia]
 gi|194122748|gb|EDW44791.1| GM15199 [Drosophila sechellia]
          Length = 302

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y + A+ EGWRARSA+KL+ ++E + IL   +R VDL ++PGSWSQV +R       T
Sbjct: 10  DIYYRLAKDEGWRARSAFKLIHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDTCET 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPT 147
                  +++A+D+  M PI G+   + D     + E I    GGN    LV+ D A   
Sbjct: 70  DDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    K
Sbjct: 130 TGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  GF
Sbjct: 190 PPSSRPSSIEAFVVCSGF 207


>gi|110669535|ref|YP_659346.1| ribosomal RNA large subunit methyltransferase J [Haloquadratum
           walsbyi DSM 16790]
 gi|121692027|sp|Q18E61|RLME_HALWD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|109627282|emb|CAJ53772.1| ribosomal RNA large subunit methyltransferase J [Haloquadratum
           walsbyi DSM 16790]
          Length = 256

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 8/192 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ EG+R RSAYKL QI+    +      ++DLG++PG W QVAA   G +   
Sbjct: 5   DEYYNRAKQEGYRTRSAYKLQQIDADAGVFGPGNTVIDLGAAPGGWLQVAAEAVGPSGT- 63

Query: 96  TRVVAID---ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
             V+ +D   I D+E  + V   + D  D  +   +R+ +  +  ++VLSDMA    G  
Sbjct: 64  --VIGVDFQRIRDLESDI-VDTIRGDMTDESTKNALRKRVNNSSVNVVLSDMAPNMTGEY 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH R++ L   A   A ++L  GGDF+VK F G    D    +   F+ V  ++P AS
Sbjct: 121 SVDHARSVHLARQAFSVATDILPAGGDFIVKVFDGRDLADFRQDVDTEFEYVKSIRPDAS 180

Query: 212 RAESVEMFLLAK 223
           R  S E +L+ K
Sbjct: 181 RDSSSEQYLVGK 192


>gi|154150934|ref|YP_001404552.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Methanoregula
           boonei 6A8]
 gi|189040312|sp|A7I848|RLME_METB6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|153999486|gb|ABS55909.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoregula boonei
           6A8]
          Length = 193

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 109/191 (57%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D    RA+ EG+R+R++YKL++I EK  +++ +  I+DLG++PGSW QV   +T     +
Sbjct: 8   DKVYLRAKHEGFRSRASYKLIEIQEKFAVIRRDDNIIDLGAAPGSWLQVLRTLT-----D 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            RV+ ID+  +  I G++  + D  D    +  ++ +G    +V+ D A    GH+  D 
Sbjct: 63  GRVLGIDLNPIADIEGIETLEGDLTDPVVQKQAKEMLG-TVCIVVCDAAPKLSGHKSYDQ 121

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R ++L E A  FA  +L  GG+F++K+FQG    ++L  ++  F  V      A+R  S
Sbjct: 122 ARAIALGEEALLFACNVLKPGGNFVIKSFQGADFPELLAAIQGQFYAVKTYSTKATRKGS 181

Query: 216 VEMFLLAKGFR 226
            E++++AK F+
Sbjct: 182 TEIYIIAKNFK 192


>gi|309356401|emb|CAP37270.2| hypothetical protein CBG_20162 [Caenorhabditis briggsae AF16]
          Length = 336

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 1/193 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+   R VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +++  + I    G   D+V+ D A    G
Sbjct: 65  EEDEKAKIVAIDLQPMAPIPGVIQLQGDITSVETANQVIEHFSGEKADIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +K++F++V   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLKNGGNFLAKIFRSRNSSLLYAQMKRYFKQVYLAKPR 184

Query: 210 ASRAESVEMFLLA 222
           +SR  S E F+L 
Sbjct: 185 SSRQSSCEAFVLC 197


>gi|291222138|ref|XP_002731075.1| PREDICTED: FtsJ homolog 1-like [Saccoglossus kowalevskii]
          Length = 361

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNAN 94
           D Y + A+ EGWRARSA+KLLQINE+  I +   ++VDL ++PGSWSQV + R+ G +  
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQINEEFNIFKDVSKVVDLCAAPGSWSQVLSRRLRGQDRE 69

Query: 95  -NTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            + ++VA+D+  M P+ GV   + D   + +  E I    G   DLV+ D A    G   
Sbjct: 70  ADPKIVAVDLQAMAPLPGVIQIQGDITKVSTAMEIIGHFEGEQADLVVCDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA      +L  GG F+ K F+G     +   LK  F KV   KP +SR
Sbjct: 130 LDEYIQAQLLLAALNITTHVLKPGGTFVAKIFRGKDVTLLYSQLKIFFPKVTIAKPRSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ + +
Sbjct: 190 NSSIEAFVVCENY 202


>gi|242280349|ref|YP_002992478.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio salexigens
           DSM 2638]
 gi|259494562|sp|C6C068|RLME_DESAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|242123243|gb|ACS80939.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio salexigens
           DSM 2638]
          Length = 199

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ E + ARS YKL +++++ ++    + ++DLG++PGSW+  AA+  G 
Sbjct: 2   KQYRDHYFKRAKKENYPARSVYKLQELDKRFKVFAKGQNVMDLGAAPGSWTLFAAKKVG- 60

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
             +  RV+A+DI   +        F + D  + DS E +       P DL++SDMA  T 
Sbjct: 61  --DTGRVLAVDIQSTDTAFPDNATFLQADVFE-DSPELLAAMDKQLPYDLIISDMAPKTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +  D   ++ LCE A       L  GG F+VK F G    + +  L+K F KV   KP
Sbjct: 118 GVKFADQANSLELCERARDIVPSRLKQGGHFIVKIFDGPDVKEYIDSLRKMFSKVKRFKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            + R ES E F++  GFR
Sbjct: 178 KSCREESKEFFIVGLGFR 195


>gi|50556146|ref|XP_505481.1| YALI0F16049p [Yarrowia lipolytica]
 gi|49651351|emb|CAG78290.1| YALI0F16049p [Yarrowia lipolytica]
          Length = 312

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 33/224 (14%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y ++A+ EGWRARSA+KLLQ++++  +    +R+VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQLDQQFHLFDGVQRVVDLCAAPGSWSQVLSRELFEKRGI 69

Query: 88  -----------------ITG-------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
                            +TG       S     ++V++D+  M PI GV   + D     
Sbjct: 70  EAGSGKTVAGSTFGGKVVTGESTAQKSSTMEKAKIVSVDLQPMAPIAGVTTIQADITHPQ 129

Query: 124 SWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + I    GG P D V SD A    G   +D      L  +A     ++L  GG+F+ K
Sbjct: 130 TLKMILDEFGGEPADFVCSDGAPDVTGLHDLDEYTQAQLILSALQLTTQLLRPGGNFVAK 189

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+G   + +   L   F++V   KP +SR  S+E F++ +G++
Sbjct: 190 IFRGRDIDLMYFQLGLLFEQVTCAKPRSSRGSSLESFIVCQGYK 233


>gi|262094409|gb|ACY09334.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 4/189 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANNTRV 98
           A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++ ++
Sbjct: 4   AKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDDVKI 63

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           VA+D+  M  + GVK  + D   + +  E  ++  G   DLV+ D A    G   ID   
Sbjct: 64  VAVDLQAMAALPGVKQIQGDITKISTAHEIXKEFEGLKADLVVCDGAPDVTGLHDIDEYV 123

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  S+E
Sbjct: 124 QSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNSSIE 183

Query: 218 MFLLAKGFR 226
            F++ + ++
Sbjct: 184 AFVICQNYK 192


>gi|85014301|ref|XP_955646.1| ribosomal RNA methyltransferase [Encephalitozoon cuniculi GB-M1]
 gi|19171340|emb|CAD27065.1| putative RIBOSOMAL RNA METHYLTRANSFERASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 237

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 99/191 (51%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+   +RARS YKL+ I+E+H I +    +VDL ++PGSWSQ A+         
Sbjct: 8   DVYYRLAKKNKYRARSVYKLMHIDEEHDIFRDVEGVVDLCAAPGSWSQYASEKLLKRNRG 67

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            R+V++DI D+ PI GV   K D       E I + +G   DLV+ D A    G  +ID 
Sbjct: 68  ARIVSVDIQDIVPIEGVMCIKDDITSASCLEKILEVLGRPADLVICDGAPDITGIHEIDE 127

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
              + L ++A   +L +   G  F+ K  +G  T  I    +K +  V  +KP ASR +S
Sbjct: 128 YLQIELLKSALATSLRVSRPGSSFVGKYLRGECTPYIAGHFRKFYGGVTLLKPKASRTDS 187

Query: 216 VEMFLLAKGFR 226
           +E FL   G +
Sbjct: 188 MECFLYCTGMK 198


>gi|262277409|ref|ZP_06055202.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HIMB114]
 gi|262224512|gb|EEY74971.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HIMB114]
          Length = 205

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 111/195 (56%), Gaps = 6/195 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ RH ND  V +A+  G+R+R+ +KL +IN K   L  N+ I+DLG++PGSWSQ  ++ 
Sbjct: 16  WIQRHHNDDLVNKARKLGYRSRAIFKLEEINNKFLFLNKNKNILDLGAAPGSWSQYLSK- 74

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
                   +++AID+L+M  +  VKF   DF + D  + I +      D+++SD+A  T 
Sbjct: 75  ----QGFKKIIAIDVLEMNNVSNVKFILGDFTNEDIKKKIFEQFKK-IDIIISDIATNTT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G++K+D  +T S+C     FA +     G  L K F G    DI+   + +F K   +KP
Sbjct: 130 GNKKLDSFKTNSICLDVLDFANKNFENDGCVLAKYFNGELDKDIIEFSRNNFSKSKIIKP 189

Query: 209 VASRAESVEMFLLAK 223
            +SR +S EM++ A+
Sbjct: 190 KSSRKDSKEMYVFAQ 204


>gi|19113236|ref|NP_596444.1| mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|9911005|sp|P78860|YBOF_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase C2G2.15c;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2956782|emb|CAA17895.1| mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)
           [Schizosaccharomyces pombe]
          Length = 218

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 16/207 (7%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  +   D Y ++++++ +R+R+AYKL+++N K++ +     ++D+G +PGSWSQVA ++
Sbjct: 10  WAAKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQVAKKL 69

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS----WEFIRQAIGGNP-------- 136
            G   N  +V+ IDI  + P  GV     D  D ++    +E +R     N         
Sbjct: 70  VG---NKGKVIGIDIQHIAPPEGVLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCRV 126

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+SDM +   G R  DH  +M LC +A   AL  L   G F+ K + G    D+  L
Sbjct: 127 VDAVISDMLHKATGIRIRDHALSMELCASALHVALTFLKSNGSFICKFYMGDEDADLQNL 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLA 222
           LK HF+ V  +KP AS  ES E + + 
Sbjct: 187 LKSHFRFVQVMKPKASLKESREAYFVC 213


>gi|297618952|ref|YP_003707057.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus voltae A3]
 gi|297377929|gb|ADI36084.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus voltae A3]
          Length = 298

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 17/205 (8%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +   D Y   A+   +R+R+ YKL Q+NEK   ++ +  ++DLG +PG W Q A  I
Sbjct: 8   WVLQRKRDFYYNLAKKNQYRSRATYKLFQLNEKFNFIKEDNVVIDLGCAPGGWLQSAREI 67

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFL-----DLDSWEFIRQAIG---GNPDLVL 140
            G +     VV ID+  ++P+      K+D +     D+   E +++A+     NPD+++
Sbjct: 68  VGEDG---FVVGIDLQKVKPL------KYDNVVAIKGDMTKEEVLKEALSYLPRNPDVII 118

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D +    G   +DH  ++ L   A   +  +L  GG+F+VK FQG   N    L+  +F
Sbjct: 119 CDASPNVSGVWDVDHTCSLILTTMALMTSTRVLKRGGNFVVKVFQGDLFNKYTDLVGTYF 178

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            KVI  KP ASR ES E++++ + F
Sbjct: 179 DKVITTKPKASRGESAEVYVIGRRF 203


>gi|221111714|ref|XP_002156663.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 299

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 4/194 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI---TGSN 92
           D Y + A+  GWRARSA+KLLQINE+  +  +  R+VDL ++PGSWSQV +R        
Sbjct: 10  DVYYRLAKEGGWRARSAFKLLQINEEFDLFTNVNRVVDLCAAPGSWSQVLSRKLIEERDQ 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
            N  ++VA+D+  M P+ GV   + D   + +   I     G P DLV+ D A    G  
Sbjct: 70  KNAVKIVAVDLQAMAPLPGVIQIQGDITKVSTANEIISHFEGEPADLVVCDGAPDVTGLH 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L IGG+F+ K F+G   N +   +K  F  V   KP +S
Sbjct: 130 DIDEYIQGQLLLAAFNITSHVLKIGGNFVAKIFRGKDVNLLYSQMKLFFTDVTVCKPRSS 189

Query: 212 RAESVEMFLLAKGF 225
           R  S+E F++   +
Sbjct: 190 RNSSIEAFIVCLNY 203


>gi|170042115|ref|XP_001848783.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Culex
           quinquefasciatus]
 gi|167865651|gb|EDS29034.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Culex
           quinquefasciatus]
          Length = 306

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 6/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR----ITGS 91
           D Y + A+ EGWRARSA+KL+ ++E   I +   R VDL ++PGSWSQV ++        
Sbjct: 10  DIYYRMAKEEGWRARSAFKLIHLDENFNIFEGVTRAVDLCAAPGSWSQVLSKKLYESRDK 69

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTIG 149
           + ++ +++A+D+  M P+ GV   + D   L + + I +  G +    LV+ D A    G
Sbjct: 70  DKDDVKIIAVDLQAMAPLPGVTQLQGDITKLSTAQAIIEHFGNDQRAQLVICDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  AA      +L IGG F+ K F+G  T  +   L+  F+KV   KP 
Sbjct: 130 LHDIDEYIQSQLLLAALNITTHVLTIGGTFIAKIFRGHDTTLLYSQLRIFFEKVSIAKPA 189

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ + ++
Sbjct: 190 SSRNSSIEAFVVCQQYK 206


>gi|303251539|ref|ZP_07337713.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649537|gb|EFL79719.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 187

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 106/189 (56%), Gaps = 4/189 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           +Q+A  +  R+R+ +KL +I +  ++ +    +VDLG++PG WSQ A    GS     R+
Sbjct: 1   MQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQYAVTQIGSKG---RI 57

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLR 157
           +A DILDM PI+GV F + DF +      + + +G +  D+V+SDMA    G   +D  R
Sbjct: 58  IACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPR 117

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
            M L E A     ++L   G F+VK FQG   ++ L  ++  F  V   KP ASR  S E
Sbjct: 118 AMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIRAMFTAVKVRKPEASRDRSRE 177

Query: 218 MFLLAKGFR 226
           ++++A G++
Sbjct: 178 VYIVATGYK 186


>gi|157117994|ref|XP_001658956.1| ribosomal RNA methyltransferase [Aedes aegypti]
 gi|108875892|gb|EAT40117.1| ribosomal RNA methyltransferase [Aedes aegypti]
          Length = 306

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 6/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--- 92
           D Y + A+ EGWRARSA+KL+ I+E   I +   R VDL ++PGSWSQV ++    N   
Sbjct: 10  DIYYRLAKEEGWRARSAFKLIHIDEVFNIFEGVTRAVDLCAAPGSWSQVLSKKLYENRDK 69

Query: 93  -ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSDMAYPTIG 149
            A++ +++A+D+  M P+ GV   + D   L +   I +  G      LV+ D A    G
Sbjct: 70  EADDVKIIAVDLQAMAPLPGVTQLQGDITKLSTANAIIEQFGNGQKAQLVICDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  AA      +L  GG F+ K F+G  T  +   L+  F+KV   KP 
Sbjct: 130 LHDIDEYIQSQLLLAALNITTHVLTEGGTFIAKIFRGKDTTLLYSQLRIFFEKVSIAKPA 189

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ + ++
Sbjct: 190 SSRNSSIEAFVVCQSYK 206


>gi|322505203|emb|CAM45493.2| putative FtsJ cell division protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 927

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---PIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D +D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDIVDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKASGWFVTKVFRSPDFHNLLWVFKQLFDKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|321474858|gb|EFX85822.1| hypothetical protein DAPPUDRAFT_309098 [Daphnia pulex]
          Length = 302

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ EGWRARSA+KLLQI+E+ +I +  +  VDL ++PGSWSQV  R   +   N
Sbjct: 10  DVYYRLAKEEGWRARSAFKLLQIDEEFRIFEGVKNAVDLCAAPGSWSQVLTRKLHNKDEN 69

Query: 96  T--RVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRK 152
              ++VA+D+  M P+ GV   + D   L + E  I    G   DLV+ D A    G   
Sbjct: 70  VSAKIVAVDLQAMAPLPGVIQIQGDITQLSTAEKIISYFEGEKADLVVCDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L  AA      +L  GG F+ K F+G     +   L+  F KV   KP++SR
Sbjct: 130 IDEYVQAQLLLAALNITTHVLKDGGIFVAKIFRGRDITLLYSQLRIFFPKVTVAKPMSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ + +
Sbjct: 190 NSSIEAFVVCQNY 202


>gi|195500126|ref|XP_002097241.1| GE24604 [Drosophila yakuba]
 gi|194183342|gb|EDW96953.1| GE24604 [Drosophila yakuba]
          Length = 302

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R       T
Sbjct: 10  DIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDACET 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPT 147
                  +++A+D+  M PI G+   + D     + E I    GGN    LV+ D A   
Sbjct: 70  DDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    K
Sbjct: 130 TGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++   F
Sbjct: 190 PPSSRPSSIEAFVVCSDF 207


>gi|325189292|emb|CCA23812.1| rRNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 874

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 6/196 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y   A+ +G+RARSA+KL+Q+N+K+  L + +  +DL ++PG W QVAA+   +
Sbjct: 6   KHDKDKYYLLARQQGYRARSAFKLIQLNKKYDFLSTAKVCIDLCAAPGGWCQVAAKYMPT 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG- 149
           ++    ++ ID+L + PI GVK F+ D       + IRQ +     D+VL D A P +G 
Sbjct: 66  SSI---IIGIDLLPIRPIRGVKTFQCDITTAKCRQIIRQEMQNWQADVVLCDGA-PNVGA 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L   A   A +++  G  F+ K F+    N +L + ++ F+KV   KP+
Sbjct: 122 EYSKDAYVQNELSLVALKLAADVMGRGATFVSKVFRSQDYNALLWVFRQLFKKVSATKPL 181

Query: 210 ASRAESVEMFLLAKGF 225
           +SR ES E+F++ + F
Sbjct: 182 SSRNESAEIFVVCEHF 197


>gi|71396836|ref|XP_802426.1| FtsJ cell division protein [Trypanosoma cruzi strain CL Brener]
 gi|70862921|gb|EAN80980.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
          Length = 211

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAK---HMPVG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L   A   A  ML   G F+ K F+    + ++ +LK+ F KV   KP+ASR E
Sbjct: 131 LFEQNALVLHAAKMAASMLKPSGWFVTKVFRSQDFHKLMWVLKQLFDKVEATKPLASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|194899566|ref|XP_001979330.1| GG14838 [Drosophila erecta]
 gi|190651033|gb|EDV48288.1| GG14838 [Drosophila erecta]
          Length = 321

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ  E  Q+L+   R VDL ++PGSWSQV A+     +  
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQAEETFQLLEGLTRAVDLCAAPGSWSQVLAKRMYEPLPP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A  + G
Sbjct: 70  EEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V   KP 
Sbjct: 130 MHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRSDRTSRLYIQLKRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVARKF 205


>gi|308464733|ref|XP_003094631.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
 gi|308247098|gb|EFO91050.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           SSR   T+K K     G+   ++ R  +D +  +A+   +RARSA+KL++I+EK + L+ 
Sbjct: 12  SSRTFSTKKAK-----GNLNRYIQRQSSDEFAVKAREHNYRARSAFKLMEIDEKFKFLKP 66

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
              ++D+G +PGSW QV          N  V+ +D+ ++ PI G +       D+ S E 
Sbjct: 67  ESTVIDIGCAPGSWIQVVV----EKCPNGYVLGVDLQNVLPIRGAEILSQS--DVTSPEV 120

Query: 128 ---IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAA-TFFALE---MLNIGGDF 179
              IR+ +     D+VLSDMA    G    DHLR + LC      F+ E    L   G F
Sbjct: 121 HLKIREKLKNRQLDVVLSDMAPNPTGDNATDHLRLIELCRTVFRLFSEENCIELKRNGVF 180

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K + G    D +  L + F  V  VKP A R  S EM+L  +GF+
Sbjct: 181 LCKIWDGAARGDFIRELSERFATVKTVKPTACRDNSAEMYLFCRGFK 227


>gi|154340024|ref|XP_001565969.1| FtsJ cell division protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 927

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHM---PIG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D +D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDIVDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLRASGWFVTKVFRSPDFHNLLWVFKQLFDKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|291288275|ref|YP_003505091.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885435|gb|ADD69135.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 197

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 112/193 (58%), Gaps = 8/193 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+LEG+++R+AYKL+++N+KH + +S   ++D+G +PG W QV  +        
Sbjct: 6   DAFYKKAKLEGFKSRAAYKLIELNKKHALFRSGDAVLDVGCAPGGWIQVVLQ-----QKK 60

Query: 96  TRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             VV +D+L++  +   +F   + D  + ++ + +  A  G  D V+SD A  T G + +
Sbjct: 61  CTVVGVDLLEVLNLTDTRFTFIQGDITEQETVDKVLDACDG-YDCVISDAAPNTSGSKLL 119

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH+ ++ L     +FA  +L  GG+F  K F+G   + ++  +KK F     ++P A+R 
Sbjct: 120 DHVNSVDLVRLIFYFAKTVLKKGGNFACKVFEGEDRDALVKEIKKDFDFCKMLRPEATRK 179

Query: 214 ESVEMFLLAKGFR 226
            S EM+++ KGF+
Sbjct: 180 NSFEMYIVFKGFK 192


>gi|224367518|ref|YP_002601681.1| putative ribosomal RNA methyltransferase 1 (23S rRNA methylase)
           [Desulfobacterium autotrophicum HRM2]
 gi|259494563|sp|C0QGP2|RLME_DESAH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|223690234|gb|ACN13517.1| putative ribosomal RNA methyltransferase 1 (23S rRNA methylase)
           [Desulfobacterium autotrophicum HRM2]
          Length = 203

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 7/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y Q+A+ E + ARS YKL++I ++ Q+++    ++DLG +PGSW   AA +TG +   
Sbjct: 16  DHYTQKARDENYPARSVYKLMEIQKRFQVIKKGASVLDLGCAPGSWLIHAAELTGPSG-- 73

Query: 96  TRVVAIDILDMEPILGVKFFKF--DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            R V ID+  ++  L         D  +++S   + +A+G + D V+SDMA  T G + I
Sbjct: 74  -RAVGIDLKPVDAALPPNAIAHTGDIFEMEST--LGEAVGQDYDAVISDMAPATTGRKDI 130

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R+ +LCEAA   A  +L  GG+F+ K FQG         +K  F      KP + R 
Sbjct: 131 DAARSFALCEAALRVACGLLADGGNFVCKIFQGAEFKQFENQVKSRFTSHKIFKPDSCRK 190

Query: 214 ESVEMFLLAKG 224
            S E++++  G
Sbjct: 191 SSKEIYIIGLG 201


>gi|313237227|emb|CBY12443.1| unnamed protein product [Oikopleura dioica]
          Length = 317

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +GWRARSA+KLLQI+E+  + ++  ++VDL ++PGSWSQV ++    +  N
Sbjct: 10  DIYYRLAKEQGWRARSAFKLLQIDERFDLFKNVTKVVDLCAAPGSWSQVLSKKL-KDKEN 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++V++D+  M PI  V   + D    + S E I    GG  DLV+ D A    G   +D
Sbjct: 69  AKIVSVDLQPMAPIDNVICIQGDITSQETSDEIITHFDGGKADLVVCDGAPDVTGLHDLD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   +  +L+ GG F+ K F+G   + I    +  F+ V   KP +SRA 
Sbjct: 129 EYIQSQLILAAFNISTFVLSPGGTFVSKIFRGRDCDLIFHQFQMFFKNVYLAKPRSSRAS 188

Query: 215 SVEMFLLAKGF 225
           SVE F++A  F
Sbjct: 189 SVEAFVVAIDF 199


>gi|159475208|ref|XP_001695715.1| tRNA-2'-O-ribose methyltransferase [Chlamydomonas reinhardtii]
 gi|158275726|gb|EDP01502.1| tRNA-2'-O-ribose methyltransferase [Chlamydomonas reinhardtii]
          Length = 323

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 99/197 (50%), Gaps = 7/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR------IT 89
           D + ++A+ EGWRARSAYKLLQI+E   I       VDL ++PGSWSQV +R      + 
Sbjct: 10  DIFYRKAKEEGWRARSAYKLLQIDEAFDIFSGVEHAVDLCAAPGSWSQVLSRKLFLPALR 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
             N N   +VA+D+  M PI GV   + D     + + +     G P DLV+ D A    
Sbjct: 70  AGNPNPPTIVAVDLQPMAPIEGVVQLQGDITSEATAKQVISHFHGQPADLVVCDGAPDVT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA      +L  GG F+ K F+G     +   LK  F +V   KP
Sbjct: 130 GLHDLDEYVQAQLLLAALSIVCAVLRPGGTFVAKIFRGKDVALLYSQLKMLFPEVYVAKP 189

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F++ + F
Sbjct: 190 KSSRNSSIEAFVVCRRF 206


>gi|294948998|ref|XP_002786001.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
 gi|239900109|gb|EER17797.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
          Length = 297

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 8/205 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAAR- 87
           L++   D Y + A+ EG+RARSAYKLLQ++E+  IL  +  R+VDL ++PGSWSQV ++ 
Sbjct: 4   LSKDKRDIYYRLAKEEGYRARSAYKLLQVDEQFHILTDDLERVVDLCAAPGSWSQVLSKK 63

Query: 88  ----ITGSN-ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
               +TGS+      +V++D+ +M PI  V   + D     + + +    GG   DLV+ 
Sbjct: 64  LCENLTGSDDKKKPLIVSVDLQEMAPIPDVTCIQGDITSEKTVKEVLDCFGGQLSDLVVC 123

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA      +L  GG F+ K F+G   + +   +   F+
Sbjct: 124 DGAPDVTGMHDMDEYVQFQLLLAALNITTLLLKPGGSFVAKVFRGENVDLLYAKMYVFFE 183

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP +SR  SVE F++ K FR
Sbjct: 184 CVWVAKPRSSRNSSVESFIVCKNFR 208


>gi|16082347|ref|NP_394821.1| hypothetical protein Ta1365 [Thermoplasma acidophilum DSM 1728]
 gi|74581427|sp|Q9HIH4|RLME_THEAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|10640708|emb|CAC12486.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 205

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 10/194 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  RA+ + +R+R+AYKL  + E++ I++  + ++++GSSPG W+QV         + 
Sbjct: 7   DQYYWRAKRDQFRSRAAYKLEFLIERYGIIKDGQAVLEIGSSPGGWTQVLV------DHG 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGHR 151
            RVVA+DI  M+ I GV F K + L  D+ E IR+ +  +     D+VLSD    T G R
Sbjct: 61  CRVVAVDIQPMDEIPGVIFLKLNILREDAAERIREEMARSLVQRFDVVLSDAMAKTSGIR 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             DH  ++ +  A    A++ L  GG  +VK FQG  T D +     +F+     KP AS
Sbjct: 121 SSDHAASVMIGNAVMKIAMDTLRRGGVAVVKQFQGDMTGDFIKNWGHYFRDHRITKPPAS 180

Query: 212 RAESVEMFLLAKGF 225
           R ES E++++  GF
Sbjct: 181 RKESSEVYIIFYGF 194


>gi|256080076|ref|XP_002576309.1| cell division protein ftsj [Schistosoma mansoni]
 gi|238661574|emb|CAZ32546.1| cell division protein ftsj, putative [Schistosoma mansoni]
          Length = 244

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 116/232 (50%), Gaps = 36/232 (15%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ--ILQSNRRIVDLGSSPGSWSQVAA 86
           W+ R  +DPYV+RA LE +R RSA+KLLQ+N+K    I +    +VD G++PGSW QVA+
Sbjct: 7   WIARQRSDPYVKRAHLESYRCRSAFKLLQLNDKISGGIFKPGDIVVDCGAAPGSWCQVAS 66

Query: 87  RITGSNA------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE----FIRQ 130
            +T  N             N   V+A D+L+  P+ GV       +DL++W      I Q
Sbjct: 67  SLTNCNNNNNNNLKASNNQNKGLVIAFDLLNFAPLPGV--ITHCGVDLNNWSECINLINQ 124

Query: 131 AIGGN---------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           +I  +          D+VLSD+A    G R+ID    M L       A+ +   G  F++
Sbjct: 125 SISSHFNNNNNNDGVDVVLSDIAPNVAGMREIDIPAMMKLAYNILRVAISVSKEGATFVI 184

Query: 182 KTFQG-------GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K FQ         T +    L  K       +KP ASR ES E++L+A+GF+
Sbjct: 185 KLFQSQEAEEFKQTVSQFYTLNSKCPSFTRFIKPEASRKESSEIYLVARGFQ 236


>gi|313242586|emb|CBY34717.1| unnamed protein product [Oikopleura dioica]
          Length = 317

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +GWRARSA+KLLQI+E+  + ++  ++VDL ++PGSWSQV ++    +  N
Sbjct: 10  DIYYRLAKEQGWRARSAFKLLQIDERFDLFKNVTKVVDLCAAPGSWSQVLSKKL-KDKEN 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++V++D+  M PI  V   + D    + S E I    GG  DLV+ D A    G   +D
Sbjct: 69  AKIVSVDLQPMAPIDNVICIQGDITSQETSDEIIAHFDGGKADLVVCDGAPDVTGLHDLD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   +  +L+ GG F+ K F+G   + I    +  F+ V   KP +SRA 
Sbjct: 129 EYIQSQLILAAFNISTFVLSPGGTFVSKIFRGRDCDLIFHQFQMFFKNVYLAKPRSSRAS 188

Query: 215 SVEMFLLAKGF 225
           SVE F++A  F
Sbjct: 189 SVEAFVVAIDF 199


>gi|124486074|ref|YP_001030690.1| hypothetical protein Mlab_1254 [Methanocorpusculum labreanum Z]
 gi|158512817|sp|A2SSW7|RLME_METLZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|124363615|gb|ABN07423.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocorpusculum
           labreanum Z]
          Length = 203

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 10/192 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D   ++A  +G+RARSAYKL+ INE+  +++    +VDLG++PGSW QV   +T      
Sbjct: 8   DNVYRKAMRDGYRARSAYKLIDINERFNVIRQTDNVVDLGAAPGSWLQVLKTMT-----E 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKI 153
            ++  +D+  + P+  V     DF D      IR+A+   P  ++V+ D +    G +  
Sbjct: 63  GQLCGVDLNPIIPLENVITITGDFTDPAIQAKIREAM---PLVNVVVCDASPHLSGAKAY 119

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R M L E A  FA  +L  GG+ ++K+FQG   N++L L+K+ F  V  ++  A+R 
Sbjct: 120 DQARVMGLNEEALNFASNLLKQGGNLVMKSFQGSDFNELLALVKEKFYSVRVIRSTATRR 179

Query: 214 ESVEMFLLAKGF 225
            S E +++AK F
Sbjct: 180 GSTECYIVAKNF 191


>gi|114051497|ref|NP_001040360.1| cell division protein [Bombyx mori]
 gi|95102628|gb|ABF51252.1| cell division protein [Bombyx mori]
          Length = 298

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 103/194 (53%), Gaps = 4/194 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ EGWRARSA+KLLQINE++ I     R VDL ++PGSWSQV  +    NA N
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCAAPGSWSQVLTKNLRQNAVN 69

Query: 96  T---RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR 151
           T   ++VA+D+  M  + GVK  + D    ++   I +   G   DLV+ D A    G  
Sbjct: 70  TEDVKIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLH 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID      L  AA      +L   G F+ K F+G   + +   LK+ F+ V   KP +S
Sbjct: 130 DIDEYVQSQLLLAALNITTHVLKNEGTFVAKIFRGKDVSLLYSQLKQFFKLVTVSKPRSS 189

Query: 212 RAESVEMFLLAKGF 225
           R  S+E F++ + +
Sbjct: 190 RNSSIEAFVICEKY 203


>gi|27904834|ref|NP_777960.1| ribosomal RNA large subunit methyltransferase J [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605259|sp|Q89AF1|RLME_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|27904232|gb|AAO27065.1| ribosomal RNA large subunit methyltransferase J [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 210

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 6/199 (3%)

Query: 29  WLNRHINDPYVQRAQL--EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           WLN H  D YV++        R+R+ +KL  I   +  L+    +VDLGSSPGSWS  A 
Sbjct: 12  WLNEHFKDKYVKQVHKNKSDIRSRAWFKLDDIQSSNNFLKVGMTVVDLGSSPGSWSGYAV 71

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAY 145
           +  G      RV+A D+  M PI  V FF+ +  +   + FI   +      +++SDMA 
Sbjct: 72  KRVGKKG---RVIACDMRPMLPIKDVVFFQGNIKNKCFFNFIETYLCHKKVHVIISDMAP 128

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              GH  IDH++ + L + A   ++++L+ GG  LVK+F G   N  +  +   F KV  
Sbjct: 129 NMTGHYFIDHIQAILLSKLALKMSIKVLSKGGSLLVKSFYGQEFNSFIQDVHVTFSKVKI 188

Query: 206 VKPVASRAESVEMFLLAKG 224
            KP +SRA S E+++LA G
Sbjct: 189 CKPNSSRARSREVYILASG 207


>gi|47214710|emb|CAG01063.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 297

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI--TGSNA 93
           D Y + A+ EGWRARSA+KLLQ++++  +     R+VDL ++PGSWSQV +R       A
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDQEFDLFTGVTRVVDLCAAPGSWSQVLSRKLRQDERA 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              ++VA+D+  M P+ GV   + D   + +  E IR   G   DLV+ D A    G   
Sbjct: 70  EEAKIVAVDLQAMAPLPGVTQIQGDITKVTTAQEIIRHFEGQPADLVVCDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR
Sbjct: 130 VDEYIQAQLLLAALNITTHVLKPGGTFVAKIFRGKDVTLLYSQLKIFFTGVTCAKPRSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ + +
Sbjct: 190 NSSIEAFVVCQNY 202


>gi|289597003|ref|YP_003483699.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Aciduliprofundum boonei
           T469]
 gi|289534790|gb|ADD09137.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Aciduliprofundum boonei
           T469]
          Length = 195

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 109/191 (57%), Gaps = 5/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+++R+++KLLQIN++  +++    ++DLG++PG WSQVA +I G     
Sbjct: 5   DYYYWEAKKRGYKSRASFKLLQINDRFYLIRKGYTVLDLGAAPGGWSQVALKIVGREG-- 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            RV+A+DI  ++ +  V++ + D    ++ + I++      D+VLSDM+    G    DH
Sbjct: 63  -RVIAVDIKPVK-LRDVEYIRGDVYSDETLKRIKER-AEKVDVVLSDMSPKISGISSWDH 119

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R++ L E A F A  +L   G F+VK FQG   N  L   +  F  V   KP AS  ES
Sbjct: 120 ARSIDLAERALFIAENVLRERGHFVVKIFQGDMLNAYLKKCRDRFDMVKVHKPKASNRES 179

Query: 216 VEMFLLAKGFR 226
            E++++ K F+
Sbjct: 180 PEIYVVCKRFK 190


>gi|325114439|emb|CBZ49995.1| putative ribosomal RNA large subunit methyltransferase J [Neospora
           caninum Liverpool]
          Length = 467

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 19/211 (9%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           +++N++ + +S +W+ R I D YV RAQ    R+R+A+KL Q++++    + N+ +VDLG
Sbjct: 252 RIRNKNSRHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDEFLFFRKNQVVVDLG 310

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-G 134
           + PG WSQVA     +     RVVA+D + M+P+    F +       + + + + +G  
Sbjct: 311 AYPGGWSQVALDRIRAGGGEGRVVAVDPVAMDPLPHHTFIQGSVGQAGTLQALLEGLGES 370

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA   IG ++ DHL    LC  A+           D + +      TN+   
Sbjct: 371 KADVVLSDMAPACIGVKQDDHLNCAELCLHAS-----------DLMEQ------TNNFKI 413

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F++V   KP A R ES EM+ + + F
Sbjct: 414 YLRTRFKRVSSAKPRACRPESREMYFVCQHF 444


>gi|303325468|ref|ZP_07355911.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
           3_1_syn3]
 gi|302863384|gb|EFL86315.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
           3_1_syn3]
          Length = 210

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +++ K ++L+   +++DLG++PGSWS   A   GS
Sbjct: 2   KEYRDHYFLKAKRENYPARSVYKLKELDAKFRLLKPGMKVLDLGAAPGSWSLGVAEKVGS 61

Query: 92  NANNTRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 V+A DI   E      V F + D     +    + A  G  DLV+SDMA  T G
Sbjct: 62  KG---LVLACDIQSTETAFPPQVLFMQEDVFQRSAAFEAKLAELGPFDLVISDMAPRTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            R  D  R++ L   A   A   L  GG+F+VK F G    D+L  ++K F  V   KP 
Sbjct: 119 TRFTDQARSLELTLEALAVACLHLKQGGNFVVKIFMGPDIQDLLTPMRKAFSSVKSFKPK 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SRAES E F    GFR
Sbjct: 179 SSRAESKETFFTGLGFR 195


>gi|194227880|ref|XP_001493665.2| PREDICTED: similar to Putative ribosomal RNA methyltransferase 1
           (rRNA (uridine-2-O-)-methyltransferase) [Equus caballus]
          Length = 301

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 97/183 (53%), Gaps = 2/183 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L +  E IR   G   DLV+ D A    G   +D
Sbjct: 70  -HVVAVDLQAMAPLPGVLQIQGDITQLSTAQEIIRHFEGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPRSSRNS 188

Query: 215 SVE 217
           S++
Sbjct: 189 SID 191


>gi|303252225|ref|ZP_07338393.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649008|gb|EFL79196.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 179

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 4/180 (2%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R+R+ +KL +I +  ++ +    +VDLG++PG WSQ A    GS     R++A DILDM 
Sbjct: 2   RSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQYAVTQIGSKG---RIIACDILDMN 58

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
           PI+GV F + DF +      + + +G +  D+V+SDMA    G   +D  R M L E A 
Sbjct: 59  PIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRAMYLVELAL 118

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               ++L   G F+VK FQG   +D L  ++  F  V   KP ASR  S E++++A G++
Sbjct: 119 DMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRAMFTTVKVRKPEASRDRSREVYIVATGYK 178


>gi|78357369|ref|YP_388818.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123552112|sp|Q30YX3|RLME_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|78219774|gb|ABB39123.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 207

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 107/199 (53%), Gaps = 9/199 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +I+++  IL+   R++DLG++PGSWS  AA   G 
Sbjct: 2   KKYRDHYFLKAKRENYPARSVYKLKEIDKRFGILKQGMRVLDLGAAPGSWSLGAAEKIGP 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIG--GNPDLVLSDMAYPT 147
           +    RV+A DI   E +    V F + D  +  S EF  QA+   G  D+V+SDMA  T
Sbjct: 62  SG---RVLAADIQTTETVFPPNVTFMQEDVFE-RSAEF-EQALSETGPFDVVISDMAPKT 116

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            GH+  D  R+ +LC  A   A   L  GG F+VK F G      +  ++  F  V   K
Sbjct: 117 TGHKFTDQARSSNLCFEALAVASLHLVEGGSFVVKIFMGPDVEAYVKQMRTLFTAVKSFK 176

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR+ES E F +  GF+
Sbjct: 177 PKSSRSESKETFYIGLGFK 195


>gi|47208174|emb|CAF94129.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ R   DPYV+ +  +  R RSA+KLL+++++  +L+    +VD G++PG+WSQVA R 
Sbjct: 26  WMLRQRKDPYVKASHSQNLRCRSAFKLLEMDDRFHLLRPGYSVVDCGAAPGAWSQVAVRR 85

Query: 89  TGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPDLVLS 141
             S           V+ ID+L++ P+ G  F    D  D  +   I + +  G   ++LS
Sbjct: 86  VNSAGAEPESPIGTVIGIDLLNIPPLDGAHFLSSHDVTDPTTHAKILELLPSGQAHVILS 145

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G + +DH R +++C      A + L  GG  + K ++G     +   L   F 
Sbjct: 146 DMAPNASGFKDMDHERLVTMCFCLLDLAEKTLRPGGSLVCKYWEGALAQKLQDKLSSVFG 205

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V  +KP ASR +S E +  A+ +
Sbjct: 206 SVRTLKPSASRKDSAEKYFFARMY 229


>gi|328949039|ref|YP_004366376.1| ribosomal RNA large subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
 gi|328449363|gb|AEB15079.1| Ribosomal RNA large subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
          Length = 220

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 107/190 (56%), Gaps = 8/190 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q+A  EG+ ARS YKL +I+EK  +L+ +  I+DLG++PGSW+    R    +   
Sbjct: 31  DYWSQKAFKEGYPARSVYKLQEIDEKFGMLKKSSIILDLGAAPGSWTVWLLRNIKQSG-- 88

Query: 96  TRVVAIDILDMEPILGVK---FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            +VV++D+  +   +  +   FF+ D L  +    I++   G  DLV+ D A  T G+R 
Sbjct: 89  -KVVSVDLNPLSKDVKAENLVFFQGDLLSEEIRNLIKEQ--GPYDLVVCDAAPLTTGNRT 145

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID LR+ +L E A ++A  ML  GG+F VK FQ G    +L  +++ F +    KP A R
Sbjct: 146 IDTLRSKALVEMAIWYAGAMLKTGGNFCVKIFQNGDQQKLLMKMREIFTQAKGFKPEACR 205

Query: 213 AESVEMFLLA 222
            ES E +L+ 
Sbjct: 206 TESFETYLIG 215


>gi|301096605|ref|XP_002897399.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
 gi|262107090|gb|EEY65142.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
          Length = 302

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y ++A+ +G+RARSA+KLLQ+++K  +L    R+VDL ++PG WSQV A        +
Sbjct: 10  DIYYRKAKQQGYRARSAFKLLQLDDKFGLLSGATRVVDLCAAPGGWSQVIAERV---PKD 66

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
           + ++A+D+++M P+ GV   K D      + E + Q  G    +V+SD A   +G   +D
Sbjct: 67  STIIAVDLMEMAPLDGVVQLKGDITHKATADEIVAQFRGQKAQVVVSDGAPDVLGLHDLD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  A    +L++L  GG F+ K F+G   + +   L++ F KV   KP  SR  
Sbjct: 127 EYLQAQLVLAGLNISLQILEDGGTFVAKLFRGKEVSLLYAQLRRFFSKVTCAKPKTSRNS 186

Query: 215 SVEMFLLAKGF 225
           S E F++ + F
Sbjct: 187 SFEAFVVCQDF 197


>gi|123476534|ref|XP_001321439.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
 gi|121904265|gb|EAY09216.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
          Length = 738

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 8/206 (3%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           QG +R +  +H  D Y   A+  G+R+R+A+KL+Q+N++   L      +DL ++PG WS
Sbjct: 3   QGKTRAY--KHRLDKYYHLARQVGYRSRAAFKLIQLNQQFNFLNDAHVCLDLCAAPGGWS 60

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
           QVAA+     A   +++AID+  ++ I  V   + D L   + + +R+ I G   D+VL+
Sbjct: 61  QVAAKYMPVGA---QIIAIDLAPIKDIPRVIALQGDILLPKTHQRVRKLIQGQKADVVLN 117

Query: 142 DMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           D A P +G   + D    + LC A+  F+   L  GG F+ K F+    N +L +L + F
Sbjct: 118 DGA-PNVGAAWVTDSSNQLELCLASVKFSTLFLRKGGSFVTKVFRSEHYNSLLWVLSQFF 176

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           +KV+  KP ASR  S E+F++A G++
Sbjct: 177 EKVVPTKPKASRDSSAELFVVALGYK 202


>gi|328953687|ref|YP_004371021.1| Ribosomal RNA large subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454011|gb|AEB09840.1| Ribosomal RNA large subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
          Length = 204

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 108/195 (55%), Gaps = 9/195 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARITG 90
           RH  D Y +RA+ E + +R+ YKL  I+ K Q+ +  + ++DLG +PGSW Q +++RI  
Sbjct: 5   RHKPDYYSRRARQESFASRAVYKLADIDRKFQLFKPGQCVLDLGCAPGSWLQYISSRI-- 62

Query: 91  SNANNTRVVAID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
                  VV +D   L +     ++F + D   LD    IR     + D+V+SD+A  T 
Sbjct: 63  --GPQGLVVGLDRQALRISSNPSIRFVQVDVAALDPGSLIR--FSASFDVVVSDLAPSTS 118

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G + +DH R++ L   +  +A  +L   G +LVK FQG         +K+HFQ+V  +KP
Sbjct: 119 GIKDVDHQRSLDLARLSWEYANRLLTAAGHYLVKVFQGPDFPPFAQEIKQHFQQVDILKP 178

Query: 209 VASRAESVEMFLLAK 223
             SR+ES E++LL +
Sbjct: 179 SGSRSESRELYLLGR 193


>gi|302336841|ref|YP_003802047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Spirochaeta smaragdinae
           DSM 11293]
 gi|301634026|gb|ADK79453.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Spirochaeta smaragdinae
           DSM 11293]
          Length = 203

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 6/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y Q A+ EG+ ARS YKL +I ++  ++ +   I+D+G++PGSWS   +R+  +
Sbjct: 6   RATADYYSQLAKKEGYPARSIYKLEEIEKRFGVINTELPILDVGAAPGSWSLFISRLIKA 65

Query: 92  NANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 +V++D+ +M      G+     D    D+++ IR    G    ++SD A  T G
Sbjct: 66  KGLQPTIVSVDLKEMTVSKKSGITVITGDAFAGDAYQSIRGM--GPYGTIVSDAAPATTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D  R+ SL  +    A E+L  GG+ +VK FQGG   +++ +++  F ++  +KP 
Sbjct: 124 NRIVDTGRSFSLASSVITLAEELLAPGGNLVVKIFQGGDEQELMEMVRSRFSQLKTLKPK 183

Query: 210 ASRAESVEMFLLAKGFRK 227
           A R +S E +L+  G RK
Sbjct: 184 ACRKDSFETYLI--GLRK 199


>gi|255954837|ref|XP_002568171.1| Pc21g11390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589882|emb|CAP96036.1| Pc21g11390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 278

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 69/270 (25%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R    ++V  ++   SS+ W  R   D + + A ++G ++R+A+KLLQI+EK++I +  +
Sbjct: 11  RNACYKQVTVQARHASSKRWQARQQKDQFTREAAVQGLKSRAAFKLLQIDEKYRIFKGGQ 70

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--DLDSW-- 125
            +VDLG +PGSWSQVAA  T  +    RV+ +DI+  +P  GV   + +FL  ++ ++  
Sbjct: 71  TVVDLGYAPGSWSQVAASRTQPHG---RVLGVDIIPAQPPKGVSTIQGNFLAPEIQTYIR 127

Query: 126 EFIRQAIGGNP-----------------------------------------DLVLSDMA 144
           +F+R    G P                                         D+VLSDM+
Sbjct: 128 DFLRNPDRGRPRQSGFLDDSSISPLEPNSDTERTTEAEKGDMRGDKILERTVDVVLSDMS 187

Query: 145 YP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            P                     T G    DH  +M LC AA  F+ ++L  GG F+ K 
Sbjct: 188 APWYQTSGFWKRSLSAPYNRMMNTSGVSFRDHAGSMDLCHAALRFSSDVLKAGGHFVCKF 247

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           +QG    ++   LK+ F++V  +KP +SR+
Sbjct: 248 YQGAEDKELEQQLKELFKRVHRLKPESSRS 277


>gi|259483730|tpe|CBF79360.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 330

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 127/273 (46%), Gaps = 77/273 (28%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R + D Y + A ++G ++R+A+KLLQI+EK+++ +S + +VDLG +PGSWSQV
Sbjct: 57  SSKRWQARQLKDHYTREAAVQGLKSRAAFKLLQIDEKYRVFKSGQTVVDLGYAPGSWSQV 116

Query: 85  AARITGSNA-----NNTRVVAIDILDMEPILGVKFFKFDFLDLDSW----EFIRQAIGGN 135
             R T S A        RV+ +DI+  +P  GV   + +FLD +      +F+R    G 
Sbjct: 117 --RATSSVALTRTRPAGRVLGVDIIPSQPPKGVSTIQGNFLDPEVQAYVRDFVRNPRRGR 174

Query: 136 P-------------------------------------------DLVLSDMAYP---TIG 149
           P                                           D+VLSDM+ P   T G
Sbjct: 175 PYSQGALQKVEDHDRMVESVLEASCTGGDLGEDYNGAVDAQRTVDVVLSDMSAPWLQTTG 234

Query: 150 ---------HRKI---------DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                    +R++         DH  +M LC AA  F+ E+L  GG F+ K +QG     
Sbjct: 235 FWKRSLSNPYRRMMNTSGVPFKDHAGSMDLCRAALEFSFEVLRAGGHFVCKFYQGAEDKI 294

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +   LK  F KV  +KP +SR  SV + LL  G
Sbjct: 295 LEKQLKVLFGKVHRLKPESSR--SVWICLLTSG 325


>gi|290974158|ref|XP_002669813.1| predicted protein [Naegleria gruberi]
 gi|284083365|gb|EFC37069.1| predicted protein [Naegleria gruberi]
          Length = 303

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 6/197 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D + ++A+ EGWRARSA+KLLQ++E+  I ++ +R VDL ++PGSWSQV  +   
Sbjct: 5   SREKRDIFYRKAKQEGWRARSAFKLLQVDEEFNIFENVKRAVDLCAAPGSWSQVLQQ--- 61

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
               +  +V++D+ +M P+ GV   + D   +  + E +    G    LV+ D A    G
Sbjct: 62  --EEDAIIVSVDLQEMAPLEGVIEIQGDITSEKTAEEIVHHFKGKKAQLVVCDGAPDVTG 119

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID    + L  AA      +L  GG F+ K F+G     +       F++V   KP 
Sbjct: 120 MHDIDEYIQLQLILAALNITSHVLEEGGSFVSKIFRGKDITLLYSQCSIFFERVYCAKPK 179

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ KGF+
Sbjct: 180 SSRNSSLESFVVCKGFK 196


>gi|290560982|gb|ADD37893.1| ribosomal RNA methyltransferase 1 [Lepeophtheirus salmonis]
          Length = 297

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQV-AARITGSNA 93
           D Y + A+ EGWRARSA+KL+QIN++  ++ S+ + +VDL ++PGSWSQV A +ITG + 
Sbjct: 10  DIYYRLAKEEGWRARSAFKLIQINDEFNLINSDVQNVVDLCAAPGSWSQVLAKKITGKSV 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRK 152
               +VA+D+  M PI GV   + D   L + E I     G+  +LV+ D A    G   
Sbjct: 70  ----IVAVDLQAMAPIPGVITLQGDITKLSTAEKIISYFDGSLAELVVCDGAPDATGLHD 125

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L  AA      +L  GG F+ K F+G   + I   L+  F  V   KP +SR
Sbjct: 126 IDEYIQGHLLLAALNITTHILKPGGSFVAKIFRGKDVSTIYSQLRLFFDSVFVAKPPSSR 185

Query: 213 AESVEMFLLAKGF 225
             S E F++ + +
Sbjct: 186 NSSKESFVVCQNY 198


>gi|220903814|ref|YP_002479126.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868113|gb|ACL48448.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 5/200 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           ++ +   D Y  +A+ E + ARS YKL +++ K ++L+  ++I+DLG++PGSWS  AA  
Sbjct: 12  FIMKEYRDHYFLKAKRENYPARSVYKLKELDAKFRLLRPGQKILDLGAAPGSWSLGAAEK 71

Query: 89  TGSNANNTRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            GS      V+A DI   E      V F + D  +       R    G  D V+SDMA  
Sbjct: 72  VGSRG---LVLACDIQSTETAFPPQVIFMQEDVFNRSPAFEARLEELGPFDHVISDMAPR 128

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G R  D  R++ L   A   A   L  GG F+VK F G    ++L  ++K F  V   
Sbjct: 129 TTGTRFTDQARSLDLAVEALAVACLHLKQGGGFVVKIFMGPDVQELLAPMRKAFTTVKSF 188

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SRAES E F +  GFR
Sbjct: 189 KPKSSRAESKETFFVGLGFR 208


>gi|225712472|gb|ACO12082.1| ribosomal RNA methyltransferase 1 [Lepeophtheirus salmonis]
          Length = 297

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQV-AARITGSNA 93
           D Y + A+ EGWRARSA+KL+QIN++  ++ S+ + +VDL ++PGSWSQV A +ITG + 
Sbjct: 10  DIYYRLAKEEGWRARSAFKLIQINDEFNLINSDVQNVVDLCAAPGSWSQVLAKKITGKSV 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRK 152
               +VA+D+  M PI GV   + D   L + E I     G+  +LV+ D A    G   
Sbjct: 70  ----IVAVDLQAMAPIPGVITLQGDITKLSTAEKIISYFDGSLAELVVCDGAPDVTGLHD 125

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L  AA      +L  GG F+ K F+G   + I   L+  F  V   KP +SR
Sbjct: 126 IDEYIQGHLLLAALNITTHILKPGGSFVAKIFRGKDVSTIYSQLRLFFDSVYVAKPPSSR 185

Query: 213 AESVEMFLLAKGF 225
             S E F++ + +
Sbjct: 186 NSSKESFVVCQNY 198


>gi|71891885|ref|YP_277615.1| ribosomal RNA large subunit (23S) methyltransferase J [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|83305654|sp|Q493U3|RLME_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71795991|gb|AAZ40742.1| Ribosomal RNA large subunit (23S) methyltransferase J [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 208

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  WL +H  D YV+ AQ +  R+RS +KL  IN    +  +   ++DLGS+PG W+   
Sbjct: 10  SSGWLQKHFKDQYVKAAQRQKLRSRSWFKLDAINRIDALFSTGMTVIDLGSAPGGWALYV 69

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
               G      R+VA DIL M  I GV F K D  + +  + + + +G    ++VLSDMA
Sbjct: 70  KSKIGKTG---RIVACDILSMRNISGVNFLKGDCSNPNISKILYKWVGQKQVNVVLSDMA 126

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G   ID  R++ L   A      +L   G FLVK FQG   +  LC +   F  V 
Sbjct: 127 PNTTGISIIDVSRSIHLGNLALNICRNVLMHRGAFLVKVFQGKGLDKYLCDVHSLFNIVR 186

Query: 205 HVKPVASRAESVEMFLLAK 223
             KP ASR+ S E++++AK
Sbjct: 187 IRKPDASRSHSREVYIVAK 205


>gi|119901150|ref|XP_001250807.1| PREDICTED: FtsJ homolog 1 [Bos taurus]
 gi|297478416|ref|XP_002690096.1| PREDICTED: FtsJ homolog 1-like [Bos taurus]
 gi|296484247|gb|DAA26362.1| FtsJ homolog 1-like [Bos taurus]
          Length = 327

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W ++   D Y + A+ +GWRARSA+KLLQ++E+ Q+ Q   R +DL ++PGSWSQV ++ 
Sbjct: 3   WSSKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFQGVTRAIDLCAAPGSWSQVLSQK 62

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G   +   VVA+D+  M P+ GV   + D   L + + I Q     P DLV+ D A P 
Sbjct: 63  IGGQGSG-HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEDCPTDLVVCDGA-PD 120

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           +    +++++   L  AA   A+ +L  GG F+ K F+G     I   L+  F +V+  K
Sbjct: 121 VTGLHVEYMQAQLL-LAALNLAMHVLKPGGCFVGKIFRGRDVTLIYSQLRVFFSRVLCAK 179

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F + KG+
Sbjct: 180 PRSSRNSSIEAFAVCKGY 197


>gi|256831249|ref|YP_003159977.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580425|gb|ACU91561.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfomicrobium
           baculatum DSM 4028]
          Length = 204

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 7/197 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y ++A+ + + ARS YKL ++++ H++L+  ++++DLG+ PGSW+  AA   G+
Sbjct: 2   KQYRDYYFKKAKQDNYPARSVYKLQEMDKAHKLLRQGQKVLDLGACPGSWTLYAAERVGA 61

Query: 92  NANNTRVVAIDI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
                RV+ ID+   D      V F + D        F+       P D+V+SDMA  T 
Sbjct: 62  EG---RVLGIDLNMPDTRFPEQVTFLQEDIFARTPL-FLGHLQALAPFDVVMSDMAPKTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +  D  R++ L EAA   A E L  GG F+ K F+G      +  LK  F KV   KP
Sbjct: 118 GSKFTDQARSIQLVEAAFGVAEEWLASGGTFIAKVFEGPDVQPFVQSLKVRFAKVGMFKP 177

Query: 209 VASRAESVEMFLLAKGF 225
            +SRAES E+F+L  GF
Sbjct: 178 KSSRAESKEIFILGLGF 194


>gi|308804277|ref|XP_003079451.1| FtsJ-like methyltransferase family protein (ISS) [Ostreococcus
           tauri]
 gi|116057906|emb|CAL54109.1| FtsJ-like methyltransferase family protein (ISS) [Ostreococcus
           tauri]
          Length = 328

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV--------AAR 87
           D Y ++A+ EGWRARSA+KLLQI+E   I +  +  VDL ++PGSWSQV        A R
Sbjct: 29  DIYYRKAKEEGWRARSAFKLLQIDESFDIFRGVKHAVDLCAAPGSWSQVLSRKLYLPAVR 88

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              S +   ++VAID+  M PI GV   + D   LD   E +    G   DL++ D A  
Sbjct: 89  AGVSESELPKIVAIDLQPMAPIEGVTTIQGDITSLDKVLEVLSHFDGKQADLIVGDGAPD 148

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  A    A  +L  GG F+ K F+G   + +   LK  F  V   
Sbjct: 149 VTGLHDLDEFMQAQLILAGLTVATHILKPGGTFIAKIFRGKDVSLLYSQLKIFFPDVTCA 208

Query: 207 KPVASRAESV 216
           KP +SR  S+
Sbjct: 209 KPKSSRNSSI 218


>gi|148292181|dbj|BAF62896.1| putative ftsj [uncultured bacterium]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ- 83
           ++R WL  H  DP+V+RA+ E +R+R+A+KL +I+ + ++ +    +++LG++PG W+Q 
Sbjct: 4   AARRWLRAHAADPFVRRARRENYRSRAAFKLAEIDRRERLCRRGMTVLELGAAPGGWTQY 63

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
           V  R+         VVA+D   +  + GV+    D  D  + + I  A G G   L+LSD
Sbjct: 64  VRERVLPGGV----VVAVDRAPLADLPGVQVVNGDAGDEMTRKKIITACGAGRAHLLLSD 119

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R  +L + A   A + L   G  LVK FQG  +  +     + F +
Sbjct: 120 MAPDLTGVAATDQARGAALVDIALAVARDCLRADGVMLVKFFQGAESAAVRRRCGEMFGR 179

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V  VKP ASR  S E +LL +  +
Sbjct: 180 VKSVKPAASRGRSREQYLLCRALK 203


>gi|195450026|ref|XP_002072331.1| GK22383 [Drosophila willistoni]
 gi|194168416|gb|EDW83317.1| GK22383 [Drosophila willistoni]
          Length = 305

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TG 90
           D + + A+ +GWRARSA+KLLQ  E   +L    R VDL ++PGSWSQV ++      T 
Sbjct: 10  DIFYRLAKQQGWRARSAFKLLQAEETFHLLDGVTRAVDLCAAPGSWSQVLSKHMYEPRTP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M PI GVK  + D     + + I +  GG    LV+SD A    G
Sbjct: 70  EEREQVKIIAVDMQGMAPIDGVKQLRADITKESTAKEIIEYFGGQKAQLVISDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  AA   A  +L  GG F+ K ++ G  + +    ++ F+ V   KP 
Sbjct: 130 QHDRDAYMQGQLLLAALSIATYILEEGGSFVGKVYRAGDISSVYAQFQRFFKDVCLFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVARQF 205


>gi|150401023|ref|YP_001324789.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus aeolicus
           Nankai-3]
 gi|189040311|sp|A6UUK5|RLME_META3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150013726|gb|ABR56177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus aeolicus
           Nankai-3]
          Length = 269

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 7/200 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ +  ND Y + A+   +R+R++YKLLQ+NEK +I+     +VDLG +PG W Q +  +
Sbjct: 8   WVMQRKNDFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASYDL 67

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP---DLVLSDMAY 145
            G +     V+ +D+  ++P+           D+   E I + I   P   D+V+ D + 
Sbjct: 68  VGEDG---FVIGVDLQKVKPLREENIVAIQG-DMTKKETINKIIDLMPSKADVVICDASP 123

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++DH R++ L   A      +L   G+F+VK FQG   +  + LL K+F+KV  
Sbjct: 124 NISGVWEVDHSRSIELSLMALIATTHLLRKNGNFVVKVFQGSLFDQYVQLLTKYFKKVQT 183

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP ASR+ S E++++ K F
Sbjct: 184 TKPKASRSVSAEVYVIGKKF 203


>gi|50311753|ref|XP_455905.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645041|emb|CAG98613.1| KLLA0F18414p [Kluyveromyces lactis]
          Length = 301

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ +G+RARSA+KLLQ+++    LQ   R+VDL ++PGSWSQV +R      S+
Sbjct: 10  DLYYRKAKEQGYRARSAFKLLQLDDDFHFLQQAVRVVDLCAAPGSWSQVLSRRLFPQSSD 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHR 151
            ++ ++VA+D+  M PI  V   + D     + + I +   G   D + SD A    G  
Sbjct: 70  NSDRKIVAVDLQPMSPIDNVITLQADITHPKTLQTITELFEGKKADFICSDGAPDVTGLH 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D      L  +A   +  +L  GG+F+ K F+G   + +   L   F+KVI  KP +S
Sbjct: 130 DLDEYVQQQLILSALQLSTCLLRKGGNFVAKIFRGRDIDMLYSQLGYLFEKVICAKPRSS 189

Query: 212 RAESVEMFLLAKGF 225
           R  S+E F++  G+
Sbjct: 190 RGTSLESFIVCLGY 203


>gi|194742497|ref|XP_001953739.1| GF17080 [Drosophila ananassae]
 gi|190626776|gb|EDV42300.1| GF17080 [Drosophila ananassae]
          Length = 301

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R       T
Sbjct: 10  DIYYRQAKEEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDTCQT 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAY 145
                  +++A+D+  M PI GV   + D     + E I    G N +    LV+ D A 
Sbjct: 70  DDEKAAVKIIAVDLQAMAPIRGVIQLQGDITKQSTAEAIIGHFGDNKEDKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  AA   A  +L  GG F+ K F+G  T  +   +K  F+K   
Sbjct: 130 DVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATWLLSSQMKIFFKKFDI 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++   F
Sbjct: 190 YKPPSSRPSSIEAFVVCSDF 209


>gi|254796904|ref|YP_003081741.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           risticii str. Illinois]
 gi|254590140|gb|ACT69502.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           risticii str. Illinois]
          Length = 186

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 9/189 (4%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN--T 96
           +++A+ E +R+R+AYK L+IN+K  +++    +++LGS+PG WSQV A     NA N   
Sbjct: 1   MKKAKAEQYRSRAAYKFLEINKKFNLIREGSVVLELGSAPGGWSQVIA-----NALNGTG 55

Query: 97  RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           R++A+D+ DM+PI GV+  K D ++L   E      G   D+++SD+A    G R  D +
Sbjct: 56  RLIAVDLADMDPIPGVEVIKLD-IELQRKELYEYISGVELDVIVSDLAPSASGSRVTDSI 114

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN-DILCLLKKHFQKVIHVKPVASRAES 215
            ++ L E    +A   L   G  ++K  +G       +  LKK F+K+ + KP ASR  S
Sbjct: 115 SSIRLAELVLEYAKSSLKKFGTVVIKILRGSEDEYRFVNSLKKKFKKIEYFKPDASRKAS 174

Query: 216 VEMFLLAKG 224
            E++L+  G
Sbjct: 175 REIYLIFLG 183


>gi|322826933|gb|EFZ31322.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
          Length = 910

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N K+  L   R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKGRVLVDLCAAPGGWCQVAAKHMPV---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L   A   A  ML   G F+ K F+    + ++ +LK+ F KV   KP+ASR E
Sbjct: 131 LFEQNALVLHAAKMAASMLKPSGWFVTKVFRSQDFHKLMWVLKQLFDKVEATKPLASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|71400687|ref|XP_803129.1| FtsJ cell division protein [Trypanosoma cruzi strain CL Brener]
 gi|70865797|gb|EAN81683.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
          Length = 651

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAKHMPV---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I       P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYFKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L   A   A  ML   G F+ K F+    + ++ +LK+ F KV   KP+ASR E
Sbjct: 131 LFEQNALVLHAAKMAASMLKPSGWFVTKVFRSQDFHKLMWVLKQLFDKVEATKPLASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|94264071|ref|ZP_01287870.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [delta proteobacterium
           MLMS-1]
 gi|93455487|gb|EAT05677.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [delta proteobacterium
           MLMS-1]
          Length = 199

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 106/195 (54%), Gaps = 8/195 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y  RA+ EG+ ARS YKL++  +K ++L+   R++DLG  PG WS  AA   G+
Sbjct: 2   KQVQDHYYHRAKKEGYPARSVYKLIEAQQKFRLLRPGDRVLDLGCQPGGWSMFAAEQVGA 61

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFL--DLDSWEFIRQAIGGNPD--LVLSDMAYPT 147
                 VV +D L+  PI   K   F F+  D++    + +     PD  ++LSDMA  T
Sbjct: 62  RG---LVVGVD-LNPGPIRPRKGAPFHFVLGDINRESVLARVREITPDYTVLLSDMAPRT 117

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G+R  D  +++ L       A E+L  GG+F  K F+G    +++   ++ F KV   K
Sbjct: 118 TGNRWADQQQSLRLAREVLRLAGELLAAGGNFYCKVFEGEDFQELVADCRQRFAKVKIFK 177

Query: 208 PVASRAESVEMFLLA 222
           P +SRAES E+F+L 
Sbjct: 178 PKSSRAESREVFVLG 192


>gi|254573574|ref|XP_002493896.1| AdoMet-dependent methyltransferase involved in rRNA processing and
           60S ribosomal subunit maturation [Pichia pastoris GS115]
 gi|238033695|emb|CAY71717.1| AdoMet-dependent methyltransferase involved in rRNA processing and
           60S ribosomal subunit maturation [Pichia pastoris GS115]
 gi|328354283|emb|CCA40680.1| hypothetical protein PP7435_Chr4-0516 [Pichia pastoris CBS 7435]
          Length = 828

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++KLLQINEK+   L+ +R ++DL ++PGSW QVA+++   NA 
Sbjct: 15  DRYYYLAKEKGYRARSSFKLLQINEKYGHFLEKSRVVIDLCAAPGSWCQVASQVCPVNA- 73

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
              ++ +DI+ ++P+     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 74  --LIIGVDIVQIKPLPNCLTFQSDITTEDCRSKLRGHMKTWKADTVLHDGA-PNVGLGWV 130

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N+++ + ++ F KV   KP ASR
Sbjct: 131 QDAFTQSQLTLQALKLAVENLGVGGTFVTKIFRSKDYNNLMWIFQQLFDKVEATKPPASR 190

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 191 NVSAEIFVVCKGFK 204


>gi|156368067|ref|XP_001627518.1| predicted protein [Nematostella vectensis]
 gi|156214430|gb|EDO35418.1| predicted protein [Nematostella vectensis]
          Length = 316

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D Y + A+ EGWRARSA+KLLQ+NE   +     ++VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLNEDFDLFSGVSKVVDLCAAPGSWSQVLSRKLIEEKQD 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
                 ++VA+D+  M P+ GV   + D     +  + I    G + DLV+ D A    G
Sbjct: 70  EEGEKPKIVAVDLQAMAPLPGVIQIQGDITKTSTANQIISHFEGEHADLVICDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  AA      +L  GG+F+ K F+G   + +   LK  F  V   KP 
Sbjct: 130 LHDIDEYIQGQLLLAALNITTHVLKPGGNFVAKIFRGKDVSLLYAQLKVFFPTVTICKPR 189

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F++ +G+
Sbjct: 190 SSRNSSIESFVVCQGY 205


>gi|239790974|dbj|BAH72013.1| ACYPI009233 [Acyrthosiphon pisum]
          Length = 307

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 110/196 (56%), Gaps = 5/196 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y + A+ +GWRARSA+KL+QIN + ++L   +R+VDL ++PGSWSQV ++       +
Sbjct: 10  DIYYRLAKEQGWRARSAFKLIQINSQFKVLDGVKRVVDLCAAPGSWSQVLSKALYSDSDD 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGN-PDLVLSDMAYPTIGH 150
            ++ ++VA+D+  M P+ GV   K D   +  + E + Q  GG   DLV+ D A    G 
Sbjct: 70  KDDVKIVAVDLQSMAPLPGVVQLKGDITKESTANEILAQFDGGRLVDLVVFDGAPDVTGL 129

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  AA      +L  GG F+ K F+G  ++ ++  L+  F  V+  KP +
Sbjct: 130 HDLDEYVQAQLLLAALNITTYLLKPGGTFIGKIFRGKDSSLLISQLEIFFGDVVVAKPCS 189

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S+E F++ + FR
Sbjct: 190 SRNSSIESFVVCRDFR 205


>gi|294901600|ref|XP_002777432.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
 gi|239885068|gb|EER09248.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
          Length = 297

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 8/205 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARI 88
           L++   D Y + A+ EG+RARSAYKLLQ++E+  IL  +  R+VDL ++PGSWSQV ++ 
Sbjct: 4   LSKDKRDIYYRLAKEEGYRARSAYKLLQVDEQFHILTDDLERVVDLCAAPGSWSQVLSKK 63

Query: 89  TGSNANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
              N   +       +V++D+ +M PI  V   + D     + + +    GG   DLV+ 
Sbjct: 64  LCENLRGSDDRKKPLIVSVDLQEMAPIPDVTCIQGDITSEKTVKEVLDCFGGQLSDLVVC 123

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA      +L  GG F+ K F+G   + +   +   F+
Sbjct: 124 DGAPDVTGMHDMDEYVQFQLLLAALNITTLLLKPGGSFVAKVFRGENVDLLYAKMYVFFE 183

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP +SR  SVE F++ K FR
Sbjct: 184 CVWVAKPRSSRNSSVESFIVCKNFR 208


>gi|309355936|emb|CAP38015.2| hypothetical protein CBG_21206 [Caenorhabditis briggsae AF16]
          Length = 236

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 25/234 (10%)

Query: 12  GLTQKVKNRSCQGSSRDWLNRHI----NDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           G+  K+++ S + +++  LNR+I     D +  +A+   +RARSA+KL++INEK + L+ 
Sbjct: 9   GIFGKIRDFSTKKAAKGNLNRYIQRQSTDEFTVKAREHNYRARSAFKLIEINEKFKFLRP 68

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
              +VD+G +PGSW QV          N   + +D+ ++ PI G         D+ S E 
Sbjct: 69  GITVVDVGCAPGSWLQVVV----DKCPNGYALGLDLQNVLPIRGADILSQS--DVTSPEI 122

Query: 128 ---IRQAI---GGNPDLVLSDMAYPTIGHRKIDHLRTMSLC---------EAATFFALEM 172
              IR+ +    G  D+VLSDMA    G  + DHLR + LC         E     A E+
Sbjct: 123 QAKIREKLQMRQGTVDVVLSDMAPNPTGDSETDHLRLIDLCRTVFRLFSKENTVENAFEL 182

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               G FL K + G    + +  L   F  V  +KP+A R  S E++L  +GFR
Sbjct: 183 SRKNGVFLCKIWDGSGRGEFVRELSDRFSMVKTMKPMACRDMSAELYLFCRGFR 236


>gi|325142054|gb|EGC64483.1| FtsJ-like methyltransferase family protein [Neisseria meningitidis
           961-5945]
          Length = 120

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 79/117 (67%), Gaps = 4/117 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQV
Sbjct: 7   SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQV 66

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           AA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 67  AAKLTGTSG---AVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVI 120


>gi|158298233|ref|XP_318425.4| AGAP003974-PA [Anopheles gambiae str. PEST]
 gi|157014425|gb|EAA13594.4| AGAP003974-PA [Anopheles gambiae str. PEST]
          Length = 304

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-AARITGS--- 91
           D Y + A+ EGWRARSA+KL+ I+E  QI     R VDL ++PGSWSQV + R+  S   
Sbjct: 10  DIYYRLAKEEGWRARSAFKLIHIDEVFQIFDGVTRAVDLCAAPGSWSQVLSKRLYESRDP 69

Query: 92  -NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTI 148
              +  +++A+D+  M P+ G+   + D   L + E I +  G      LV+ D A    
Sbjct: 70  AERDEVKIIAVDLQTMGPLPGIIQLQGDITKLSTAEAIIEHFGDQQKAQLVICDGAPDVT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID      L  AA      +L  GG F+ K F+G  T+ +   L+  F++V   KP
Sbjct: 130 GLHDIDEYIQSQLLLAALNITTHVLTPGGTFVAKIFRGKDTSLLYSQLRIFFERVTIAKP 189

Query: 209 VASRAESVEMFLLAKGFR 226
            +SR  S+E F++ + +R
Sbjct: 190 PSSRNSSIEAFVVCQDYR 207


>gi|195438774|ref|XP_002067307.1| GK16249 [Drosophila willistoni]
 gi|194163392|gb|EDW78293.1| GK16249 [Drosophila willistoni]
          Length = 306

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y + A+ EGWRARSA+KL+ I++  +I    +R+VDL ++PGSWSQV +R       T
Sbjct: 10  DVYYRLAKEEGWRARSAFKLMHIDDAFKIFSGVKRVVDLCAAPGSWSQVLSRKLYDTCET 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAY 145
                N +++A+D+  M PI GV   + D     + E I +  G   +    LV+ D A 
Sbjct: 70  DEEKANVKIIAVDLQAMAPIRGVIQLQGDITKESTAEAIIEHFGEGVEQKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  +A   A  +L  GG F+ K F+G  T  +   ++  F+   +
Sbjct: 130 DVTGVHEMDEYMQHQLLVSALSIATFVLEPGGSFVAKIFKGNDTTLLDSQMRTFFKHFEY 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP++SR  S+E F++ + F
Sbjct: 190 YKPLSSRPSSIEHFVVCRDF 209


>gi|58264212|ref|XP_569262.1| cell division protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57223912|gb|AAW41955.1| cell division protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 237

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 110/219 (50%), Gaps = 34/219 (15%)

Query: 29  WLNRHINDPYVQR-------AQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGS 80
           WL R   DPYV++            +R+RS++KL+ + + H IL +  + +VDLG++PG 
Sbjct: 17  WLTRQSRDPYVRQRTGTSSSPSQPSYRSRSSFKLVSLAKSHPILSRETKSVVDLGAAPGG 76

Query: 81  WSQVAARITGSNANNT---RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----- 132
           WSQVAA + G +   T   RV AIDIL M+PI  V+  + DFL     E ++  +     
Sbjct: 77  WSQVAAHLLGVDKKPTSKPRVWAIDILPMDPIPAVQTLQGDFLSSSVRETLQSLVGTPES 136

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-----------------I 175
           GG  D VLSDM  P  G R  D   ++ LC AAT FA  +L                   
Sbjct: 137 GGGVDTVLSDMMAPMTGVRTRDVGLSLELCAAATVFARGVLKQASKEDEVKVVKGKKVWP 196

Query: 176 GGDFLVKTFQGGTTNDILCL-LKKHFQKVIHVKPVASRA 213
           GG+ ++K F     ++   L L + F KV+  KP  SR+
Sbjct: 197 GGNLVMKFFAHPDLDEFRKLELDRWFGKVVVEKPKESRS 235


>gi|94986714|ref|YP_594647.1| 23S rRNA methylase [Lawsonia intracellularis PHE/MN1-00]
 gi|143460425|sp|Q1MRQ0|RLME_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|94730963|emb|CAJ54326.1| 23S rRNA methylase [Lawsonia intracellularis PHE/MN1-00]
          Length = 200

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 9/196 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ E + ARS YKL +I+ +  + Q    ++DLG+SPGSWS  AA   G     
Sbjct: 6   DYYFLKAKHEKYPARSIYKLKEIDNRFCLFQKGMSVLDLGASPGSWSLGAAEKVGKTG-- 63

Query: 96  TRVVAIDILDMEPIL--GVKFFKFD-FLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
            RVV+ DI  +   L   V FF+ D F   DS+  I   I   P  +++SDMA  T G +
Sbjct: 64  -RVVSCDIQTITIPLPSNVSFFQEDIFHRSDSFNNI--LIKEGPFHVIMSDMAPQTTGVK 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             DH R++ LC  A   A   L   G F+VK F G  T +++  +++HF++V   KP +S
Sbjct: 121 ITDHSRSLELCLEALAIAKCYLLQQGSFIVKIFMGADTIELVKEMRQHFERVTSFKPCSS 180

Query: 212 RAESVEMFLLAKGFRK 227
           R +S E+F +  GF++
Sbjct: 181 RTKSKEIFYVGLGFKR 196


>gi|261326555|emb|CBH09516.1| FtsJ cell division protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 905

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N K+  L   R +VDL ++PGSW QVAA+        
Sbjct: 14  DAYYRLAKDQGFRARSAFKLVQLNRKYDFLSKCRVLVDLCAAPGSWCQVAAKHMPV---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  +  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITEEKTKKIIMTYLKREPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   A   A ++L  GG F+ K F+    + ++ ++K+ F KV   KP+ASR E
Sbjct: 131 LFEQNSLVLHAAKLASKLLRPGGWFVTKVFRSQDFHKLMWVMKQLFDKVEATKPLASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F+   G++
Sbjct: 191 SAEIFVTCAGYK 202


>gi|76154918|gb|AAX26315.2| SJCHGC03585 protein [Schistosoma japonicum]
          Length = 218

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 12/207 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-----RRIVDLGSSPGSWSQV- 84
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL S       R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 85  AARITGSNANNTR----VVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLV 139
           + R+  S + + R    +VA+D+  M PI GV   + D    D+  + I+   G    LV
Sbjct: 65  SKRLWESKSPDDRKSVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFSGKLAQLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D A    G   +D      L  AA      +L +GG F+ K F+G  +  +   L+  
Sbjct: 125 VCDGAPDVTGLHDLDEYVQSHLILAALTICSRVLELGGTFVAKVFRGRDSGLLGSQLRCL 184

Query: 200 FQ-KVIHVKPVASRAESVEMFLLAKGF 225
           F  +V   KP ASR  S+E F++ +GF
Sbjct: 185 FSGQVSFAKPKASRNSSLESFVVCRGF 211


>gi|84043710|ref|XP_951645.1| cell division protein [Trypanosoma brucei TREU927]
 gi|33348588|gb|AAQ15913.1| FtsJ cell division protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|62359748|gb|AAX80179.1| FtsJ cell division protein, putative [Trypanosoma brucei]
          Length = 905

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N K+  L   R +VDL ++PGSW QVAA+        
Sbjct: 14  DAYYRLAKDQGFRARSAFKLVQLNRKYDFLSKCRVLVDLCAAPGSWCQVAAKHMPV---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  +  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITEEKTKKIIMTYLKREPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   A   A ++L  GG F+ K F+    + ++ ++K+ F KV   KP+ASR E
Sbjct: 131 LFEQNSLVLHAAKLASKLLRPGGWFVTKVFRSQDFHKLMWVMKQLFDKVEATKPLASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F+   G++
Sbjct: 191 SAEIFVTCAGYK 202


>gi|195036840|ref|XP_001989876.1| GH18555 [Drosophila grimshawi]
 gi|193894072|gb|EDV92938.1| GH18555 [Drosophila grimshawi]
          Length = 356

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E   +L+   R VDL ++PG WSQV +R      T 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFNLLEGVERAVDLCAAPGGWSQVLSRRMYEPRTV 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
                 +++A+D   M PI GV   + D     + + I +  GG    LV+SD A    G
Sbjct: 70  EEREKVKIIAVDTQGMAPIDGVTQLRADITKESTADAIIEFFGGKKAQLVVSDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   A  +L  GG F+ K ++   T+ +   L++ F+ V   KP 
Sbjct: 130 SHDWDAYMQAQLLLSALSIATYILEEGGSFMGKVYRAANTSKVYLQLQRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVARQF 205


>gi|321248436|ref|XP_003191127.1| cell division protein [Cryptococcus gattii WM276]
 gi|317457594|gb|ADV19340.1| cell division protein, putative [Cryptococcus gattii WM276]
          Length = 255

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 121/236 (51%), Gaps = 34/236 (14%)

Query: 25  SSRDWLNRHINDPYVQR-------AQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGS 76
           SS  WL R   DPYV++       +    +R+RS++KL+ + + H IL +  + +VDLG+
Sbjct: 13  SSNRWLARQSRDPYVRQRVGTPSSSSQPSYRSRSSFKLVSLAKSHPILSRETKSVVDLGA 72

Query: 77  SPGSWSQVAARITGSNANNT---RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI- 132
           +PG WSQVAA + G +   T   RV AIDIL M+PI  V+  + DFL     E ++  + 
Sbjct: 73  APGGWSQVAAHLLGVDKKLTSKPRVWAIDILPMDPIPAVRTLQGDFLSSSVRETLQSLVG 132

Query: 133 ----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-------------- 174
               GG  D VLSDM  P  G R  D   ++ LC AAT FA  +L               
Sbjct: 133 TPESGGGVDTVLSDMMAPMTGVRTRDVGLSLELCAAATAFARGVLKQASKEDEVKIIKGK 192

Query: 175 ---IGGDFLVKTFQGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               GG+ ++K F     ++   L L + F KV+  KP  SR+ES E + +  GF+
Sbjct: 193 KVWPGGNLVMKFFAHPDLDEFRRLELDQWFGKVVVEKPKESRSESSEAYWVCLGFK 248


>gi|317484651|ref|ZP_07943554.1| FtsJ-like methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316924125|gb|EFV45308.1| FtsJ-like methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 204

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +I+ + +I +   +++DLG++PGSWS  AA   G+
Sbjct: 2   KEYRDHYFLKAKQENYPARSVYKLKEIDGRFKIFRKGMKVLDLGAAPGSWSLGAAERVGA 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
                +V+A DI     +    V+F + D     S  F RQ     P  +V+SDMA  T 
Sbjct: 62  QG---KVLACDIQSTVTVFPPNVEFHQEDVFQ-RSEAFERQLAETGPFHVVMSDMAPQTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +  D  R++ LC  A   A + L  GG F+VK F G    ++L  ++  F +V   KP
Sbjct: 118 GTKFTDQARSLELCLEALAVAEKYLVKGGSFVVKIFMGPDVGELLKGMRPRFARVTSFKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            +SR ES E F +  GF+
Sbjct: 178 QSSRVESKETFFVGLGFK 195


>gi|149241908|ref|XP_001526378.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450501|gb|EDK44757.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 334

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 108/235 (45%), Gaps = 39/235 (16%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARIT 89
           N+   D Y +RA+ EGWRARSAYKLLQ++++  +L SN +R+VDL ++PGSWSQV ++  
Sbjct: 5   NKDKRDLYYRRAKEEGWRARSAYKLLQLDQEFNLLNSNVKRVVDLCAAPGSWSQVLSKRL 64

Query: 90  GS-------------------------------------NANNTRVVAIDILDMEPILGV 112
            S                                     NA+  ++VA+D+  M PI GV
Sbjct: 65  HSSTTATNNSSTATTPITPTTPTAPTAAAAATTTSSVNVNADAAKIVAVDLQPMTPIEGV 124

Query: 113 KFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
              + D     + + I         D V SD A    G   +D      L  AA      
Sbjct: 125 TTIQADITHPKTLQQILDCFDNELADFVCSDGAPDVTGLHDLDEYVQHQLVWAALQLTTC 184

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F  K F+G   + +     K F +V+  KP +SR  S+E F++  G+R
Sbjct: 185 ILKPGGSFAAKIFRGKDIDVMYKQFSKFFDRVVCAKPRSSRGTSLEAFIVGLGYR 239


>gi|255083873|ref|XP_002508511.1| predicted protein [Micromonas sp. RCC299]
 gi|226523788|gb|ACO69769.1| predicted protein [Micromonas sp. RCC299]
          Length = 327

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG----- 90
           D Y ++A+ EGWRARSA+KLLQI++   IL++ + +VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDDSFDILKNVKNVVDLCAAPGSWSQVLSRRIYLPAKE 69

Query: 91  ---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAY 145
               + +  +++AID+  M PI G+   + D   +   E I      G   DLV+SD A 
Sbjct: 70  KGLPDEDMPKLIAIDLQPMAPIEGITTIQGDMTSMAKVEEILAHFTDGRKADLVISDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  A       +L  GG ++ K F+G     +   LK  F++V  
Sbjct: 130 DVTGLHDMDEFMQAQLILAGLTVCTHILADGGTYVAKIFRGKDCALLYSQLKLFFKQVTC 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ + +
Sbjct: 190 AKPKSSRNSSIEAFVVCQEY 209


>gi|320535785|ref|ZP_08035866.1| ribosomal RNA large subunit methyltransferase J [Treponema
           phagedenis F0421]
 gi|320147333|gb|EFW38868.1| ribosomal RNA large subunit methyltransferase J [Treponema
           phagedenis F0421]
          Length = 197

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 8/189 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  EG+ ARS YKL +IN+K ++   + +I+DLG++PGSW+    R    NA  
Sbjct: 9   DFWTKKAFSEGYPARSVYKLEEINKKFKLFSPSDKILDLGAAPGSWTSFVLRRMTPNA-- 66

Query: 96  TRVVAIDILDM-EPILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
             + A+D+  + E I+   + FF+ D       + +++   G  + V+ D A  T G++ 
Sbjct: 67  -MICAVDLKPLAENIIDERLHFFQGDLYSKQIIQSVKEL--GPYNAVICDAAPATTGNKT 123

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R++ L E A F+A EML  GG+F VK FQGG    +L  ++  F  V   KP A R
Sbjct: 124 VDTARSLGLVELAVFYAQEMLVKGGNFTVKIFQGGDRQQLLKDMRNIFDTVKTFKPQACR 183

Query: 213 AESVEMFLL 221
           + S E +L+
Sbjct: 184 SSSFETYLI 192


>gi|332255476|ref|XP_003276857.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
           methyltransferase 1-like [Nomascus leucogenys]
          Length = 329

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A      +K+ 
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDGKXQQKVG 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 GQAGAPLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|66504555|ref|XP_392223.2| PREDICTED: putative ribosomal RNA methyltransferase 1-like isoform
           1 [Apis mellifera]
          Length = 370

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 101/200 (50%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y +RA+ EGWRARSA+KLLQI+ +  IL    + VDL ++PGSWSQV +R        
Sbjct: 10  DIYYRRAKEEGWRARSAFKLLQIDNECHILDGVNKAVDLCAAPGSWSQVLSRRLNENYKK 69

Query: 88  -ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAY 145
            +   NA   ++VA+D+  M P+ GV   + D  ++D+  + I        DLV+ D A 
Sbjct: 70  ALETGNAIPPKIVAVDLQAMAPLEGVIQIQGDITNIDTAKQIISHFDNEQADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L  GG F+ K F+      +   LK  F  V  
Sbjct: 130 DVTGLHDMDIYIQSQLLLAALNITTHILKQGGTFVAKIFRAKDVTLLYAQLKIFFPYVYC 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ K +
Sbjct: 190 TKPSSSRNSSIEAFVVCKDY 209


>gi|226469920|emb|CAX70241.1| FtsJ homolog 1 [Schistosoma japonicum]
          Length = 345

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 12/207 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-----RRIVDLGSSPGSWSQV- 84
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL S       R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 85  AARITGSNANNTR----VVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLV 139
           + R+  S + + R    +VA+D+  M PI GV   + D    D+  + I+   G    LV
Sbjct: 65  SKRLWESKSPDDRKSVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFSGKLAQLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D A    G   +D      L  AA      +L +GG F+ K F+G  +  +   L+  
Sbjct: 125 VCDGAPDVTGLHDLDEYVQSHLILAALTICSRVLELGGTFVAKVFRGRDSGLLGSQLRCL 184

Query: 200 FQ-KVIHVKPVASRAESVEMFLLAKGF 225
           F  +V   KP ASR  S+E F++ +GF
Sbjct: 185 FSGQVSFAKPKASRNSSLESFVVCRGF 211


>gi|10120640|pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine
 gi|10120641|pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine, Mercury Derivative
          Length = 180

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 6/181 (3%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDIL 104
           G R+R+ +KL +I +  ++ +    +VDLG++PG WSQ V  +I G      R++A D+L
Sbjct: 1   GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKG----RIIACDLL 56

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCE 163
            M+PI+GV F + DF D    + + + +G +   +V+SDMA    G   +D  R M L E
Sbjct: 57  PMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVE 116

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            A     ++L  GG F+VK FQG   ++ L  ++  F KV   KP +SRA S E++++A 
Sbjct: 117 LALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 176

Query: 224 G 224
           G
Sbjct: 177 G 177


>gi|46580665|ref|YP_011473.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602033|ref|YP_966433.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           DP4]
 gi|81566318|sp|Q729T9|RLME_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513904|sp|A1VC40|RLME_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|46450084|gb|AAS96733.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562262|gb|ABM28006.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311234393|gb|ADP87247.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           RCH1]
          Length = 204

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +I+ + +I +   +++DLG++PGSWS  AA   G 
Sbjct: 2   KKYRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGP 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFD-FLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
                RV+A D+ + + +    V F + + F   +++E +   I    D+V+SDMA  T 
Sbjct: 62  RG---RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIAPF-DVVISDMAPRTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G R  D  R++ LC  A   A   L  GG F+VK F G    +++  +++ F  V   KP
Sbjct: 118 GTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            +SRAES E F +  G+R
Sbjct: 178 KSSRAESKETFYVCLGYR 195


>gi|328711007|ref|XP_003244421.1| PREDICTED: putative ribosomal RNA methyltransferase C4F10.03c-like
           [Acyrthosiphon pisum]
          Length = 307

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 109/195 (55%), Gaps = 5/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y + A+ +GWRARSA+KL+QIN + ++L   +R+VDL ++PGSWSQV ++       +
Sbjct: 10  DIYYRLAKEQGWRARSAFKLIQINSQFKVLDGVKRVVDLCAAPGSWSQVLSKALYSDSDD 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGN-PDLVLSDMAYPTIGH 150
            ++ ++VA+D+  M P+ GV   K D   +  + E + Q  GG   DLV+ D A    G 
Sbjct: 70  KDDVKIVAVDLQSMAPLPGVVQLKGDITKESTANEILAQFDGGRLVDLVVFDGAPDVTGL 129

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  AA      +L  GG F+ K F+G  ++ ++  L+  F  V+  KP +
Sbjct: 130 HDLDEYVQAQLLLAALNITTYLLKPGGTFIGKIFRGKDSSLLISQLEIFFGDVVVAKPCS 189

Query: 211 SRAESVEMFLLAKGF 225
           SR  S+E F++ + F
Sbjct: 190 SRNSSIESFVVCRDF 204


>gi|300123162|emb|CBK24435.2| unnamed protein product [Blastocystis hominis]
          Length = 288

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 2/192 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSNAN 94
           D Y ++A+  G+RARSA+KLLQINE++ I     R VDL ++PGSWSQV +R +      
Sbjct: 10  DIYYRKAKEVGYRARSAFKLLQINEEYHIFDQVSRAVDLCAAPGSWSQVLSRELYKPEKK 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
           + ++VA+D+ +M PI GV   + D     +  E I    G    LV+ D A    G   +
Sbjct: 70  DVKIVAVDLQEMAPIEGVIQIQGDITSKKTADEIINHFEGKKAQLVICDGAPDVTGLHDM 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  +A     ++L  GG F+ K F+G     +   L+  F +V   KP +SR 
Sbjct: 130 DVYVQSQLLLSALSITAQVLCDGGTFIAKIFRGRDVTLLFAQLRVFFSEVACCKPKSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S+E F++ + F
Sbjct: 190 SSMEAFVVCRDF 201


>gi|308273424|emb|CBX30026.1| Ribosomal RNA large subunit methyltransferase J [uncultured
           Desulfobacterium sp.]
          Length = 208

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 106/191 (55%), Gaps = 7/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ E + ARS YKL ++  ++++++   R++DLG  PGSW+  A+ + G     
Sbjct: 21  DHYSRLAKKENYPARSVYKLQELQSRYKLIKKGGRVLDLGCYPGSWTIYASDLVGQKGT- 79

Query: 96  TRVVAIDI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             VV ID+  LD++       ++ D L++D+   +  +IG   D+V+SDMA  T G++ +
Sbjct: 80  --VVGIDLKKLDIKIPSNALVYQCDILNIDNSMLL--SIGNKFDIVISDMAPATTGNKSV 135

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D +R+  LC AA   A  +L   G FL K FQG   N  L ++K  F      KP +SR 
Sbjct: 136 DAVRSYDLCLAALDVANNVLLHNGSFLCKIFQGEDFNKFLEMVKAAFNTYKIFKPQSSRK 195

Query: 214 ESVEMFLLAKG 224
            S E++++  G
Sbjct: 196 LSKEIYIIGLG 206


>gi|17553474|ref|NP_499776.1| hypothetical protein F45G2.9 [Caenorhabditis elegans]
 gi|9910849|sp|O62251|RRMJ2_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase F45G2.9;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|3877251|emb|CAB07618.1| C. elegans protein F45G2.9, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 214

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 104/211 (49%), Gaps = 10/211 (4%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           QG+   ++ R   D +  +A+   +RARSA+KL++INEK + L+    ++D+G +PGSW 
Sbjct: 8   QGNLHKYIQRQSTDEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWL 67

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNP-DLVL 140
           QV  +       N     +D+ ++ PI G       D  D      IR+ +     D+VL
Sbjct: 68  QVVVQ----KCPNGYASGVDLQNVLPIRGADILSLSDITDPAVKLKIREKLAHRQVDVVL 123

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAA-TFFALE---MLNIGGDFLVKTFQGGTTNDILCLL 196
           SDMA    G    DHLR + LC +    F++E    L   G +L K + G    + +  L
Sbjct: 124 SDMAPNPTGDNATDHLRLIELCRSVFRLFSVENEIELVKNGVYLCKIWDGSARAEFVREL 183

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              F  V  VKP A R  S E++L  + F+K
Sbjct: 184 SDRFSTVKTVKPTACRDNSAELYLFCRNFKK 214


>gi|282164555|ref|YP_003356940.1| ribosomal RNA large subunit methyltransferase J [Methanocella
           paludicola SANAE]
 gi|282156869|dbj|BAI61957.1| ribosomal RNA large subunit methyltransferase J [Methanocella
           paludicola SANAE]
          Length = 254

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 6/190 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+  G+R+R+A+KL  INEK  +++    +VDLG++PG W QVA  I+      
Sbjct: 7   DFYYNKAKQMGYRSRAAFKLKFINEKFGLIKKGDAVVDLGAAPGGWLQVAKEIS-----E 61

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             V+ +D+  +EP+ G    K D    ++   I + +    + V+ D A    G+  +DH
Sbjct: 62  GTVIGVDLQRIEPVEGAVTIKGDMTSPETQAKIFEKVE-KVNAVICDAAPNLSGNWALDH 120

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R++ L + A   A ++L  GG+FLVK FQG      +  + + F +V   K  ASR +S
Sbjct: 121 ARSIDLSKTALDVAAKILAPGGNFLVKVFQGDLYQGFVDEVGRRFSRVYTYKSPASRQQS 180

Query: 216 VEMFLLAKGF 225
            E++++ KGF
Sbjct: 181 AEIYVIGKGF 190


>gi|42522939|ref|NP_968319.1| cell division protein FtsJ [Bdellovibrio bacteriovorus HD100]
 gi|81617714|sp|Q6MN40|RLME_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|39574135|emb|CAE79312.1| cell division protein FtsJ [Bdellovibrio bacteriovorus HD100]
          Length = 196

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 5/189 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y ++A+ E + ARS +KL +I++K ++ +  + ++DLG+SPGSWSQ A+++ G     
Sbjct: 7   DHYFRKAKQENFAARSVFKLEEIDQKFKMFKPGQVVLDLGASPGSWSQYASKMAGEKG-- 64

Query: 96  TRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKI 153
            RV+ +D+  +   L    F + D  DL+  +  ++     P D+V+SDMA  T G R  
Sbjct: 65  -RVLGVDLSPVTVKLKNAVFIQADLRDLNLEDIFKEHGFVPPFDIVMSDMAPKTTGIRMT 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R+M LCE A   A   L   G F+ K F       +   +KK F KV  VKP ++R 
Sbjct: 124 DQARSMELCELALDVARRFLKKDGHFVCKLFHSDDFGKLRDEMKKTFAKVEAVKPDSTRK 183

Query: 214 ESVEMFLLA 222
            S E+FL+ 
Sbjct: 184 ISKEIFLVG 192


>gi|325114247|emb|CBZ49804.1| putative ftsJ-like methyltransferase domain-containing protein
           [Neospora caninum Liverpool]
          Length = 988

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 109/195 (55%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITGSNAN 94
           D +   A+ +G+RARSA+KLLQ++++  + Q N  R+VDL ++PG W QVAA+     + 
Sbjct: 17  DKFYHLAKEQGYRARSAFKLLQLSQRFNLFQKNCSRVVDLCAAPGGWLQVAAKHCPVAST 76

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-K 152
              +V +D++ ++PI GV+ F  D         +R+ +  G  DLVL D   P +G    
Sbjct: 77  ---IVGVDLVPIQPIRGVETFTGDITTAACAAKLRKLVKFGEVDLVLHD-GSPNMGTDWS 132

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  +A   A ++L  G  F+ K F+ G    +L +L+  F +V   KP ASR
Sbjct: 133 VDAFNQNVLVLSAARLACQLLAAGATFVSKVFRSGDYAALLYVLQTLFDRVDATKPQASR 192

Query: 213 AESVEMFLLAKGFRK 227
           A S E+F++ +GF+K
Sbjct: 193 AVSAEIFVVCRGFKK 207


>gi|255712339|ref|XP_002552452.1| KLTH0C05214p [Lachancea thermotolerans]
 gi|238933831|emb|CAR22014.1| KLTH0C05214p [Lachancea thermotolerans]
          Length = 303

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--ITGSNA 93
           D Y ++A+ EG+RARSA+KLLQ++E+   L +  R+VDL ++PGSWSQV +R        
Sbjct: 10  DLYYRKAKEEGYRARSAFKLLQLDEQFHFLDNVTRVVDLCAAPGSWSQVLSRRLFDDDTE 69

Query: 94  NNT--RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGH 150
           NN+  R+VA+D+  M PI  V   + D     +   I     G   D V SD A    G 
Sbjct: 70  NNSSKRIVAVDLQPMFPIDNVTTIQADITHPKTLNKIMDLFEGEKADFVCSDGAPDVTGL 129

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  +A      +L  GG F+ K F+G   + +   L   F++V+  KP +
Sbjct: 130 HDLDEYVQQQLILSALQLTTCLLREGGVFVAKIFRGRDIDMLYSQLSFLFERVVCAKPRS 189

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S+E F++  G+R
Sbjct: 190 SRGTSLESFIVCLGYR 205


>gi|156547729|ref|XP_001605414.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 311

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y +RA+ EGWRARSA+KLLQI+++  I     + VDL ++PGSWSQV ++ T ++   
Sbjct: 10  DIYYRRAKEEGWRARSAFKLLQIDDEFNIFNGVTKAVDLCAAPGSWSQVLSQ-TSTDVVA 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKID 154
            +++A+D+  M PI GV   + D  ++ + E I    G  + DLV+ D A    G   +D
Sbjct: 69  PKIIAVDLQAMAPIEGVVQIQGDITNVTTAEQIIAHFGNEHADLVVCDGAPDVTGLHDMD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA     ++L   G F+ K F+    + +   LK  F  V   KP +SR  
Sbjct: 129 IYIQSQLLLAALKITTQILKPKGTFVAKIFRAKDASLLYSQLKIFFTSVTCAKPRSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S E F++ K F
Sbjct: 189 SFEAFVVCKDF 199


>gi|148702027|gb|EDL33974.1| Ftsj homolog 1 (E. coli), isoform CRA_c [Mus musculus]
          Length = 310

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 16/191 (8%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A          
Sbjct: 70  -QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGA---------- 118

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                  C AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 119 ---PDGKC-AALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 174

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 175 SIEAFAVCQGY 185


>gi|149235103|ref|XP_001523430.1| hypothetical protein LELG_05276 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452839|gb|EDK47095.1| hypothetical protein LELG_05276 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 300

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 122/211 (57%), Gaps = 11/211 (5%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQ 83
            +R  L +  +DP+  R + + +R+R+A+K+L+IN++ ++   N + IVDLG +PG+W+Q
Sbjct: 31  QTRKHLAKVQDDPF-NRRKGDFYRSRAAFKILEINDRCRLFHKNCKNIVDLGFAPGAWTQ 89

Query: 84  VAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI---GGNP--- 136
           VA  ++      + +++ IDI +  P  G  + + D L  ++ E I++      G+P   
Sbjct: 90  VAVEKLHEQKIEDFKILGIDINEAVPYRGCHYIQGDLLKKETHEKIKEFFKSKDGSPEQI 149

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DL++SDM     GH   DHL  M LC AAT  + + L  GG+ ++K + G     +   +
Sbjct: 150 DLIMSDMMVNCTGHEHYDHLGNMELCGAATILSFDTLKTGGNLVMKVWHGSEEKLLDLRM 209

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +  F++++ +KP +SR+ES E+F +  G RK
Sbjct: 210 RIMFERLVRMKPESSRSESSELFYV--GLRK 238


>gi|298529995|ref|ZP_07017397.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509369|gb|EFI33273.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 198

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 12/196 (6%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + I D Y ++A+ + + ARS YKL +++ +  +L+  ++++DLG+SPGSW   AA+   S
Sbjct: 2   KKIRDHYSRQARQDNYPARSVYKLKEMDRRFSLLRPGQKVLDLGASPGSWCSFAAQKVQS 61

Query: 92  NANNTRVVAIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYP 146
                 V+A+D+   EP L     V F + D ++ ++     Q     P DLVLSDMA  
Sbjct: 62  RGF---VLAVDL--KEPTLSFPQHVVFIQGDIINDNAAR--EQVRDFAPFDLVLSDMAPK 114

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G +  D  R+  L   A   A EML  GG  +VK F+G    ++   +K  F++V H 
Sbjct: 115 TTGIKITDQARSHELAREAFDLAREMLGPGGSMVVKIFEGPDVQELGREMKACFKRVKHF 174

Query: 207 KPVASRAESVEMFLLA 222
           KP +SRAES E+FL+ 
Sbjct: 175 KPKSSRAESKEIFLVG 190


>gi|47124733|gb|AAH70677.1| LOC431876 protein [Xenopus laevis]
          Length = 346

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 6/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+  G+R+RSA+KL+Q+N K Q LQ  R +VDL ++PG W QVAA+       
Sbjct: 12  KDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCAAPGGWLQVAAKFMPV--- 68

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
           ++ ++ ID++ ++PI  V   + D    D  + +++ +     D+VL+D A P +G    
Sbjct: 69  SSLIIGIDLVPIKPIPNVLTLQEDITTEDCRQAVKKHLQTWKADVVLNDGA-PNVGANWT 127

Query: 154 -DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D    + L   A   A + L+ GG F+ K F+      +L +L++ F+KV   KP ASR
Sbjct: 128 HDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWILQQFFKKVNSTKPQASR 187

Query: 213 AESVEMFLLAKGF 225
           +ES E+F++ +GF
Sbjct: 188 SESAEIFVVCQGF 200


>gi|300869923|ref|YP_003784794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
           95/1000]
 gi|300687622|gb|ADK30293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
           95/1000]
          Length = 194

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 18/202 (8%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARI-- 88
           + + D Y ++A+ E ++ARS +KL +   K + ++S+  ++D+G SPGS+SQ +  +I  
Sbjct: 2   KKVQDFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDNVLDVGCSPGSFSQYMLNKIIK 61

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKF---DFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           TGS      VV +DIL        + FKF   D  ++D+  F         D+V+SD   
Sbjct: 62  TGS------VVGVDILPNN--FSHQRFKFILGDIKEMDASTFDNIEF----DVVVSDAMP 109

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T   R+ +HLR++ LCE   + A ++L   G+F +K F G    +    L  +F  V  
Sbjct: 110 NTTSDRETNHLRSIGLCEKIFYLAKDVLKDNGNFFIKVFDGKDLPNFKKELNDYFDSVTV 169

Query: 206 VKPVASRAESVEMFLLAKGFRK 227
            KP +SR ES E+FL AKGF+K
Sbjct: 170 FKPKSSRDESREVFLFAKGFKK 191


>gi|50289623|ref|XP_447243.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526552|emb|CAG60176.1| unnamed protein product [Candida glabrata]
          Length = 309

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 11/201 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQVAAR------ 87
           D Y ++A+ EG+RARSAYKLLQ+NE+   L     +R+VDL ++PGSWSQV +R      
Sbjct: 10  DLYYRKAKEEGYRARSAYKLLQLNEEFHFLDDPELKRVVDLCAAPGSWSQVLSRKLFAER 69

Query: 88  --ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
             +     ++ +++A+D+  M PI  V   + D     + E I +  G    D V SD A
Sbjct: 70  EPVADGQEDDRKIIAVDLQPMSPIDHVITLQADITHPRTLERIYELFGNQKADFVCSDGA 129

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  +A      +L  GG F+ K F+G   + +   L   F+K++
Sbjct: 130 PDVTGLHDLDEYIQHQLIMSALQLTTCVLKRGGTFVAKIFRGRDIDMLYSQLGYLFEKIV 189

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR  S+E F++  G+
Sbjct: 190 CAKPRSSRGTSLEAFIVCIGY 210


>gi|196016828|ref|XP_002118264.1| hypothetical protein TRIADDRAFT_62287 [Trichoplax adhaerens]
 gi|190579165|gb|EDV19267.1| hypothetical protein TRIADDRAFT_62287 [Trichoplax adhaerens]
          Length = 313

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------I 88
           D Y ++A+ EGWRARSA+KLLQI+E+  I +   R VDL ++PGSWSQV ++       +
Sbjct: 10  DIYYRQAKEEGWRARSAFKLLQIDEEFTIFKGVTRAVDLCAAPGSWSQVLSKKLRNQENL 69

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
           + +  +  ++VA+D+  M P+ GV   + D   + +   I     G   DLV+ D A   
Sbjct: 70  SEAEQSKVKIVAVDLQAMAPLDGVIQIQGDITSVSTANRIIDYFEGEKADLVVCDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG F+ K F+G   + +   L+  F  V   K
Sbjct: 130 TGQHDLDEYFQAQLLLAALNITNHVLKSGGTFIAKIFRGKDVSLLYSQLRVFFPNVTISK 189

Query: 208 PVASRAESVEMFLLAKGFRK 227
           P +SR  S+E F++ + + +
Sbjct: 190 PRSSRNSSIEAFVVCRNYSQ 209


>gi|42527473|ref|NP_972571.1| cell division protein FtsJ [Treponema denticola ATCC 35405]
 gi|81831375|sp|Q73L97|RLME_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|41818058|gb|AAS12482.1| cell division protein FtsJ [Treponema denticola ATCC 35405]
 gi|325473730|gb|EGC76919.1| ribosomal RNA large subunit methyltransferase J [Treponema
           denticola F0402]
          Length = 199

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 8/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  E + ARS YKL ++N+K  +   N +++DLG++PGSW+    R        
Sbjct: 10  DYWSKKAFAENYPARSVYKLEEMNKKFNLFSPNDKVLDLGAAPGSWTVYVLRFLNKEG-- 67

Query: 96  TRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            RV A+D+  ++  +    + FF+ D  D    + +++   G  D V+ D A  T G++ 
Sbjct: 68  -RVTAVDLKPLDSSVYDERLNFFQGDMFDKGIIKSVKEL--GPYDAVICDAAPATTGNKT 124

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R+  L E A ++A E L  GG F+VK FQGG     L  L+K F+     KP A R
Sbjct: 125 VDTARSSGLVELALYYAQEQLKQGGSFVVKIFQGGDQQIHLNNLRKCFKTARAFKPEACR 184

Query: 213 AESVEMFLLAKGFR 226
           + S E +L+   F+
Sbjct: 185 SSSFETYLIGLDFK 198


>gi|302846344|ref|XP_002954709.1| hypothetical protein VOLCADRAFT_102215 [Volvox carteri f.
           nagariensis]
 gi|300260128|gb|EFJ44350.1| hypothetical protein VOLCADRAFT_102215 [Volvox carteri f.
           nagariensis]
          Length = 297

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR------IT 89
           D + ++A+ EGWRARSAYKLLQI+E   I       VDL ++PGSWSQV +R      + 
Sbjct: 10  DIFYRKAKEEGWRARSAYKLLQIDEAFDIFSGVAHAVDLCAAPGSWSQVLSRKLYLPAVR 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
             + +   +VA+D+  M PI GV   + D   ++ + + I    G   DLV+ D A    
Sbjct: 70  SGSPSPPTIVAVDLQPMAPIEGVIQLQGDITSEVTAKQVISHFDGQPADLVVCDGAPDVT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA      +L  GG F+ K F+G     +   LK  F +V   KP
Sbjct: 130 GLHDLDEYVQAQLLLAALSIVCAVLRPGGTFVAKIFRGKDVALLYSQLKLLFPEVYVAKP 189

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F++ + F
Sbjct: 190 KSSRNSSIEAFVVGRRF 206


>gi|262199868|ref|YP_003271077.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haliangium ochraceum DSM
           14365]
 gi|262083215|gb|ACY19184.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haliangium ochraceum DSM
           14365]
          Length = 199

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 10/201 (4%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
           D  NRH  D Y QRA+  G+ AR+ +KL +I++K  + +   R++DLG +PGSW Q    
Sbjct: 6   DRRNRH--DVYHQRARKRGFLARAVFKLEEIDDKLDLFRRGDRVLDLGCAPGSWLQYCRT 63

Query: 88  ITGSNANNTRVVAID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
             G       +V ID   LD E I G +    D  ++ + E ++  +    D+VLSDMA 
Sbjct: 64  RVGPTGE---LVGIDRGPLDAE-IPGARLLSGDVFEV-APETLQGPLEAF-DVVLSDMAP 117

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G R +D  R+ SL E A   A  +L  GG+F+ K FQG   +D++   ++ F  V  
Sbjct: 118 DTTGIRHLDQARSESLFERALDIADAVLAPGGNFVGKLFQGPAFSDLVKRCRRDFDAVKI 177

Query: 206 VKPVASRAESVEMFLLAKGFR 226
           VKP  SR  S+E +++A+G R
Sbjct: 178 VKPKGSRQRSIEQYVVARGRR 198


>gi|320582207|gb|EFW96425.1| rRNA methyltransferase, putative [Pichia angusta DL-1]
          Length = 824

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 110/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K+LQIN+K+   L+ ++ ++DL ++PGSW QVAA++   N  
Sbjct: 14  DRYYHLAKEKGYRARSSFKILQINQKYGHFLEKSKVVIDLCAAPGSWCQVAAQLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + +V +DI+ ++PI     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIVGVDIVPIKPIPNCITFQSDITTEDCKSKLRGHLKTWKADTVLHDGA-PNVGLNWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F KV   KP ASR
Sbjct: 130 QDAYTQSHLTLQALRLAVEHLAAGGTFVTKVFRSRDYNNLVWVFRQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|206598233|gb|ACI16035.1| ribosomal RNA methyltransferase [Bodo saltans]
          Length = 321

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-AARITGSNAN 94
           D Y ++A+ EG+RARSAYKLLQI+E+  +  +  + VDL ++PGSWSQV  A++      
Sbjct: 10  DMYYRKAKEEGYRARSAYKLLQIDEELDVFTNVTKAVDLCAAPGSWSQVLTAKL--PQTP 67

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
             R+VA+D+ +M PI GV   + D     +   +   +G    +LV+ D A    G  ++
Sbjct: 68  ERRIVAVDLQEMAPIAGVVCIQGDITTEKTANEVIGRLGDVKAELVICDGAPDVTGLHEL 127

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  AA      +L  GG F+ K F+G  T  ++   +  F+ V+ +KP +SR 
Sbjct: 128 DEYVQHQLLLAALNITTFVLAPGGTFVTKMFRGPNTPFLVAKSEMFFENVMIMKPKSSRN 187

Query: 214 ESVEMFLLAKGFR 226
            S+E F++ + FR
Sbjct: 188 ASMEAFMVCQNFR 200


>gi|257076513|ref|ZP_05570874.1| FtsJ-like methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 194

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 11/198 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +NR   D Y  RA+ + +R+R++YKLL+I  K  ++     +++ GSSPG W+QV  ++T
Sbjct: 1   MNRK--DRYYTRAKKDNFRSRASYKLLEIQSKFNVIWKTDYVIEFGSSPGGWTQVVQKLT 58

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAY 145
                   V+AIDI  M+PI  V F + +  D +  E I+ A+      +   VLSD   
Sbjct: 59  -----EKPVIAIDISPMDPIENVTFVQGNINDPELSEKIKIAMDSLGISSVSTVLSDAMI 113

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G+   DH+ +  LC+     ++++L+ GG+ ++K FQG +T   +   K +F     
Sbjct: 114 KTSGNYDRDHMGSYLLCDNVMNLSIDLLSSGGNVVLKQFQGDSTMAFVNKWKVYFNYYKV 173

Query: 206 VKPVASRAESVEMFLLAK 223
            KP ASR  S E++++ K
Sbjct: 174 TKPNASRQHSREVYIIFK 191


>gi|195498417|ref|XP_002096514.1| GE25011 [Drosophila yakuba]
 gi|194182615|gb|EDW96226.1| GE25011 [Drosophila yakuba]
          Length = 318

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ  E  Q+L    R VDL ++PGSWSQV A+     +  
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQAEETFQLLDGLTRAVDLCAAPGSWSQVLAKRMYDPLPP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M  I GV   + D     + E I +  GG    +V+SD A  + G
Sbjct: 70  EERERVKIIAVDLQGMASIEGVTQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V   KP 
Sbjct: 130 MHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADKTSRLYTQLKRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVAQKF 205


>gi|256075992|ref|XP_002574299.1| ribosomal RNA methyltransferase [Schistosoma mansoni]
 gi|238659500|emb|CAZ30532.1| ribosomal RNA methyltransferase, putative [Schistosoma mansoni]
          Length = 300

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN----RRIVDLGSSPGSWSQVAA 86
           +R   D Y + A+ EGWRARSAYKLLQI++++ I  +      R+VDL ++PGSWSQV +
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGIFSTENTLLERVVDLCAAPGSWSQVLS 64

Query: 87  R-----ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVL 140
           +      +  +  + ++VA+D+  M PI GV   + D    D+  + I+   G    LV+
Sbjct: 65  KRLWESKSPEDQKSVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFDGKLAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  +  +   L+  F
Sbjct: 125 CDGAPDVTGLHDLDEYVQSHLILAAVTICSRVLELGGTFVAKVFRGRDSGLLGSQLRCLF 184

Query: 201 Q-KVIHVKPVASRAESVEMFLLAKGF 225
             +V   KP ASR  S+E F++ +GF
Sbjct: 185 SGEVSFAKPRASRNSSLESFVICRGF 210


>gi|195392525|ref|XP_002054908.1| GJ22540 [Drosophila virilis]
 gi|194152994|gb|EDW68428.1| GJ22540 [Drosophila virilis]
          Length = 316

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E   +L+   R VDL ++PG WSQV ++      T 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFNLLEGVTRAVDLCAAPGGWSQVLSKRLYEPRTP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
                 +++A+D+  M PI GV   + D    ++ E I +   G    LV+SD A    G
Sbjct: 70  EEREQVKIIAVDMQGMAPIDGVTQLREDITKEETAEAIIKFFDGKKAQLVVSDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG F+ K ++   T+D+   L++ F+ V   KP 
Sbjct: 130 MHDWDAYMQAQLLLSALSISTYILEEGGSFMGKVYRAANTSDVYLQLQRFFKDVCIFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++ + F
Sbjct: 190 ASRNSSIEAFVVCRQF 205


>gi|198428770|ref|XP_002127655.1| PREDICTED: similar to FtsJ homolog 1 [Ciona intestinalis]
          Length = 322

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAAR-ITGSNA 93
           D Y + A+ +GWRARSA+KLL ++E+  +  +  +++VDL ++PGSWSQV +R + G+  
Sbjct: 10  DVYYRLAKEQGWRARSAFKLLHLDEEFNLFHNGVKKVVDLCAAPGSWSQVLSRKLRGTEV 69

Query: 94  NN---TRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIG 149
            N    ++VA+D+  M  + GV   + D  ++ + +  I    G + DLV+ D A    G
Sbjct: 70  ENNKDVKIVAVDLQAMADLPGVIQLQGDITNVSTAQSIISHFEGESADLVVCDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  AA      +L +GG F+ K F+G     +   L+  F+KV   KP 
Sbjct: 130 LHDIDEYIQAQLLLAALNITTHVLKLGGTFVAKIFRGKDVTLLYAQLRLFFKKVTCAKPR 189

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F++ + +
Sbjct: 190 SSRNSSIEAFVVCENY 205


>gi|169641976|gb|AAI60685.1| LOC431876 protein [Xenopus laevis]
          Length = 852

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 6/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+  G+R+RSA+KL+Q+N K Q LQ  R +VDL ++PG W QVAA+       
Sbjct: 12  KDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCAAPGGWLQVAAKFMPV--- 68

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-K 152
           ++ ++ ID++ ++PI  V   + D    D  + +++ +     D+VL+D A P +G    
Sbjct: 69  SSLIIGIDLVPIKPIPNVLTLQEDITTEDCRQAVKKHLQTWKADVVLNDGA-PNVGANWT 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D    + L   A   A + L+ GG F+ K F+      +L +L++ F+KV   KP ASR
Sbjct: 128 HDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWILQQFFKKVNSTKPQASR 187

Query: 213 AESVEMFLLAKGF 225
           +ES E+F++ +GF
Sbjct: 188 SESAEIFVVCQGF 200


>gi|317032331|ref|XP_001394644.2| transfer RNA methyltransferase [Aspergillus niger CBS 513.88]
          Length = 396

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 31/221 (14%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVAARITG 90
           D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPDKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 91  SNAN--------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI---------G 133
            + +        N ++V+ID+  M P+ G+   K D     +   + +A+          
Sbjct: 70  KDTDMAELKPRKNVKIVSIDLQPMAPLEGITTLKADITHPSTIPLLLRALDPEAYDSSTS 129

Query: 134 GNP---------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
             P         DLV+SD A    G   +D      L  +A   AL +L  GG F+ K F
Sbjct: 130 STPSAIRPPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIF 189

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +G   + +   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 190 RGRDVDLLYAQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 230


>gi|115528317|gb|AAI24923.1| LOC431876 protein [Xenopus laevis]
          Length = 762

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 109/192 (56%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N K Q LQ  R +VDL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + ++ ID++ ++PI  V   + D    D  + +++ +     D+VL+D A P +G     
Sbjct: 70  SLIIGIDLVPIKPIPNVLTLQEDITTEDCRQAVKKHLQTWKADVVLNDGA-PNVGANWTH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D    + L   A   A + L+ GG F+ K F+      +L +L++ F+KV   KP ASR+
Sbjct: 129 DAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWILQQFFKKVNSTKPQASRS 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|116748440|ref|YP_845127.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Syntrophobacter
           fumaroxidans MPOB]
 gi|143461985|sp|A0LGZ0|RLME_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|116697504|gb|ABK16692.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Syntrophobacter
           fumaroxidans MPOB]
          Length = 197

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y  +A+ E + AR+ YKL +I ++++IL+   R++DLG++PGSW Q A  I G + 
Sbjct: 5   VRDHYFHKAKKEHYLARAVYKLQEIQDRYKILKPGNRVLDLGAAPGSWMQFAREIVGPSG 64

Query: 94  NNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQ-AIGGNP-DLVLSDMAYPTIG 149
               VV +D+  +E     GV   + D  D    E  R  ++   P D+VLSDMA  T G
Sbjct: 65  ---LVVGVDLKGVEHRFPEGVVVLQGDVTDP---ELARSLSVEHGPFDVVLSDMAPSTSG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            R  D  R+  L E+A   A   L  GG F+ K FQG   + +L  +K+ F+ V   KP 
Sbjct: 119 IRVADSARSALLFESALEMARSALRPGGHFVAKLFQGAEFHVLLQAVKRDFEWVKVTKPD 178

Query: 210 ASRAESVEMFLLAKGFRK 227
           ASR +S E++++    RK
Sbjct: 179 ASRKQSKEIYVIGMRLRK 196


>gi|307719842|ref|YP_003875374.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM
           6192]
 gi|306533567|gb|ADN03101.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM
           6192]
          Length = 194

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 111/196 (56%), Gaps = 11/196 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +D Y ++A+ EG+ ARS YKL++I +K++I+    R++DLG++PGSWS+      G    
Sbjct: 5   DDYYTRKAKREGYPARSVYKLMEIQQKYRIVSPGDRVLDLGAAPGSWSKYLLSCVGEKG- 63

Query: 95  NTRVVAIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
              VVA+D+L +  ++G    + F++ DF   +  E  R  +     +++SD A  T G+
Sbjct: 64  --LVVAVDLLPL--VIGSHERLVFYQGDFTSDEVQE--RVDVHAPFQVIVSDAAPSTSGN 117

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D  R+ +L E     A   L  GG+ + K FQG    +I   +++ +++   V+P A
Sbjct: 118 RGLDTARSEALVEGILSLAGRWLVPGGNLVAKLFQGSGAQEIFRAVREGWERAYFVRPRA 177

Query: 211 SRAESVEMFLLAKGFR 226
           +R +S E+F++  G R
Sbjct: 178 TRRQSFEVFVVGVGRR 193


>gi|195060807|ref|XP_001995863.1| GH14141 [Drosophila grimshawi]
 gi|193891655|gb|EDV90521.1| GH14141 [Drosophila grimshawi]
          Length = 311

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 102/202 (50%), Gaps = 12/202 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------T 89
           D Y ++A+ EGWRARSA+KLL I+E+  I    +R VDL ++PGSWSQV +R       T
Sbjct: 10  DVYYRQAKEEGWRARSAFKLLHIHEQFSIFDGVQRAVDLCAAPGSWSQVLSRKLFEPCQT 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAY 145
                  +++A+D+  M PI GV   + D     + E I    G   D    LV+ D A 
Sbjct: 70  DDEKLAVKIIAVDLQAMAPIPGVLQIQGDITQESTAEAIIAHFGSGDDQKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  +A   A  +L  GG F+ K F   T ND+L    + F K  H
Sbjct: 130 DVTGFHEMDEYMQNQLIVSALSLATCVLEPGGKFVAKIF-NVTENDLLETQMRTFFKHFH 188

Query: 206 V-KPVASRAESVEMFLLAKGFR 226
           + KP +SR  S E F++   FR
Sbjct: 189 IYKPPSSRPSSYEAFVVCSDFR 210


>gi|116515168|ref|YP_802797.1| hypothetical protein BCc_236 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285436|sp|Q057J5|RLME_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|116257022|gb|ABJ90704.1| ribosomal methytransferase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 209

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 26/215 (12%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS++WL R+ NDPY++    +  R+RS +KL +I+E  +I +    ++DLGS+PG WS+ 
Sbjct: 9   SSKNWLKRNFNDPYIKERNKKKLRSRSWFKLKEIDESEKIFKKGMNVIDLGSNPGGWSEY 68

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFK------------FDFLDLDSWEFIRQAI 132
             +  G +    ++ A DIL M  +  + FF             F FLD  SW       
Sbjct: 69  TLKKIGKSG---KIFACDILPMRFLKDIVFFCGDISNSDFLKKIFLFLDKYSW------- 118

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               ++V+SD++    G+  ID+     L       +  +L+  G  ++K FQG   N  
Sbjct: 119 ----NVVMSDISPNICGYSVIDNSNMFKLSNIVLKISRHVLSNNGYLIIKLFQGYGFNKY 174

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +  ++  F+ V   KP ASR  S E+F++A G +K
Sbjct: 175 MKKIRNIFELVKIYKPNASRVNSREVFIIAYGCKK 209


>gi|50289513|ref|XP_447188.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526497|emb|CAG60121.1| unnamed protein product [Candida glabrata]
          Length = 281

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 52/256 (20%)

Query: 15  QKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRI 71
            + +NR   + SS+ WL+R   D Y + ++L+  R+R+ +KL Q+++ + +   +  +RI
Sbjct: 14  HRTQNRCYSRASSKRWLDRQKQDFYTRESKLDNLRSRAGFKLAQLDDVYHVFHKSVPQRI 73

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ- 130
           +DLG +PG+WSQVA + T     ++ V+ +DIL  +P  GV   + + L   + + IRQ 
Sbjct: 74  LDLGYAPGAWSQVARKRTHP---DSIVLGVDILPCDPPFGVSSMQANILSKRTHQLIRQF 130

Query: 131 -------------AIGGNP-----------DLVLSDMAYP-------------------- 146
                        ++  N            +++LSDM  P                    
Sbjct: 131 FMEQIFMNDSQVESMARNDSDTEQQPQFPVNIILSDMYEPFPQLSPSLNNLTNMPYYRMS 190

Query: 147 -TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G    DHL ++ LC+AA   A+++L   G F+ K F G  T+     +KK F +V  
Sbjct: 191 NTSGLNFKDHLNSIDLCDAALITAVDLLEPAGSFICKQFSGAETSLFEKRMKKVFDRVEI 250

Query: 206 VKPVASRAESVEMFLL 221
            KP ASR ES E++ +
Sbjct: 251 TKPSASRDESKEIYFI 266


>gi|322796151|gb|EFZ18727.1| hypothetical protein SINV_05439 [Solenopsis invicta]
          Length = 359

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--- 92
           D Y ++A+ EGWRARSA+KLLQI+ +  I     + VDL ++PGSWSQV AR    N   
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDSECHIFDGVSKAVDLCAAPGSWSQVLARKLKENYEK 69

Query: 93  ------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAY 145
                 A+  ++VA+D+  M P+ GV   + D  + ++  E I        DLV+ D A 
Sbjct: 70  ASEKGSASPPKIVAVDLQAMAPLEGVIQLQGDITNTNTAKEIIAHFDNTRADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA   A  +L  GG F+ K F+      +   L+  F  V  
Sbjct: 130 DVTGLHDMDIFIQSQLLLAALNIATHILRPGGTFVAKIFRAKDVTFLYAQLRIFFPYVYC 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ K +
Sbjct: 190 TKPSSSRNSSIEAFVVCKDY 209


>gi|330836075|ref|YP_004410716.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
 gi|329747978|gb|AEC01334.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
          Length = 206

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 3/197 (1%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R+  D Y  RA+ EG+ ARS YKL +I +  +I++   +++D+G++PGSW+    R    
Sbjct: 6   RNTADSYTLRARKEGYPARSVYKLEEIQKVFRIIRPGAKVLDVGAAPGSWTLYVHREILK 65

Query: 92  NANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
              +   V ++ L + P+   V  F  D    D    +   + G  D ++SD A  T G+
Sbjct: 66  GKGSIVAVDLNPLSLNPLPPSVMEFTGDAFSEDIRSLL--VVNGPYDAIISDAAPMTTGN 123

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D  R+ +L E+    A E L   G+ ++K FQGG  N +L  +KK+F K    KP A
Sbjct: 124 RMVDVARSENLAESVLSLAREHLKPHGNLVIKIFQGGGHNAVLADVKKYFIKSKTFKPAA 183

Query: 211 SRAESVEMFLLAKGFRK 227
            R++S E +++    +K
Sbjct: 184 CRSDSFETYIIGLDLKK 200


>gi|302344658|ref|YP_003809187.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfarculus baarsii
           DSM 2075]
 gi|301641271|gb|ADK86593.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfarculus baarsii
           DSM 2075]
          Length = 207

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 9/196 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y +RA+ EG+ ARS YKL ++++++ +L+   R++D+G  PGSW Q AA   G
Sbjct: 3   SRKDQDSYYRRAKQEGFAARSVYKLQEMDQRYGLLRQGMRVLDIGCHPGSWLQYAA---G 59

Query: 91  SNANNTRVVAIDILDME---PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
                  V+ +DI ++    P  G +F + D L L   E +  A+    D+VLSD+A  T
Sbjct: 60  RVGPGGLVLGVDIQELAVDLPRWG-RFIQADVLKLTPAEVL--AVAPAFDVVLSDVAPRT 116

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G R  D   ++++ EA    AL +L  GG FL K + G   + ++  +K  F+     K
Sbjct: 117 TGVRHADEAASLAMLEAVFDLALAVLRPGGSFLAKVYFGPGVDQLIHQVKGRFKLGKGHK 176

Query: 208 PVASRAESVEMFLLAK 223
           P AS+A S E+++L +
Sbjct: 177 PAASKAASKEIYILGR 192


>gi|45201131|ref|NP_986701.1| AGR036Wp [Ashbya gossypii ATCC 10895]
 gi|44985914|gb|AAS54525.1| AGR036Wp [Ashbya gossypii ATCC 10895]
          Length = 306

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y ++A+ +G+RARSA+KLLQ+N++   L   +R+VDL ++PGSWSQV +R    +  N
Sbjct: 10  DLYYRKAKEQGFRARSAFKLLQLNDEFHFLDGVQRVVDLCAAPGSWSQVLSRELFPDGKN 69

Query: 96  T--RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRK 152
           T  R+VA+D+  M  I  V   + D     +   I +   G   D V SD A    G   
Sbjct: 70  TKKRIVAVDLQPMSRIEHVTTLQADITHPRTLTKIIELFKGEKADFVCSDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  +A    + +L  GG F+ K F+G   + +   L   F KV   KP +SR
Sbjct: 130 LDEYVQQQLILSALKLTVSLLAPGGCFVAKIFRGRDIDMLYSQLGLLFDKVTCAKPRSSR 189

Query: 213 AESVEMFLLAKGF 225
             S+E F++ +G+
Sbjct: 190 GTSLESFIVCQGY 202


>gi|146075540|ref|XP_001462727.1| FtsJ-like methyltransferase [Leishmania infantum JPCM5]
 gi|134066806|emb|CAM65266.1| putative FtsJ-like methyltransferase [Leishmania infantum JPCM5]
 gi|322496134|emb|CBZ31205.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 457

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 116/243 (47%), Gaps = 52/243 (21%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAA---RIT 89
           D Y ++A+ EG+RARSAYKLLQI+E+  IL         VDL ++PGSWSQV A   ++ 
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQIHEEFNILDPAEIRTGAVDLCAAPGSWSQVLAQHFKMI 69

Query: 90  GSN-----------ANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR-------- 129
           G+N           A   RVVA+D+ +M PI GV   + D   ++ + E IR        
Sbjct: 70  GANLTAAAEGDSLPAQTPRVVAVDLQEMAPIDGVTLLQGDITSEVTAREIIRLLNAPTPT 129

Query: 130 -----------------------QAIGGNP---DLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                                   A+G +P   D+VL D A    G  ++D      L  
Sbjct: 130 GVALTDDEQQQPANSSFSSPAPSPALGASPRKADIVLCDGAPDVTGMHELDEYLQHHLLL 189

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           AA      +L  GG FL K F+G  T  ++      FQ+V  VKP +SR  S+E FLL +
Sbjct: 190 AALHITTFVLRAGGCFLTKMFRGPNTAFLVAKSGLFFQQVRVVKPKSSRNASMESFLLCQ 249

Query: 224 GFR 226
           GFR
Sbjct: 250 GFR 252


>gi|268575662|ref|XP_002642810.1| Hypothetical protein CBG21206 [Caenorhabditis briggsae]
          Length = 210

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 21/213 (9%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           ++ R   D +  +A+   +RARSA+KL++INEK + L+    +VD+G +PGSW QV    
Sbjct: 4   YIQRQSTDEFTVKAREHNYRARSAFKLIEINEKFKFLRPGITVVDVGCAPGSWLQVVV-- 61

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF---IRQAI---GGNPDLVLSD 142
                 N   + +D+ ++ PI G         D+ S E    IR+ +    G  D+VLSD
Sbjct: 62  --DKCPNGYALGLDLQNVLPIRGADILSQS--DVTSPEIQAKIREKLQMRQGTVDVVLSD 117

Query: 143 MAYPTIGHRKIDHLRTMSLC---------EAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           MA    G  + DHLR + LC         E     A E+    G FL K + G    + +
Sbjct: 118 MAPNPTGDSETDHLRLIDLCRTVFRLFSKENTVENAFELSRKNGVFLCKIWDGSGRGEFV 177

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L   F  V  +KP+A R  S E++L  +GFR
Sbjct: 178 RELSDRFSMVKTMKPMACRDMSAELYLFCRGFR 210


>gi|73621933|sp|Q751U1|SPB1_ASHGO RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
          Length = 845

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++PGSW QVA+ +   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASNLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLNWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N ++ + ++ F KV   KP ASR
Sbjct: 130 QDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVFQQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|238882966|gb|EEQ46604.1| AdoMet-dependent rRNA methyltransferase SPB1 [Candida albicans
           WO-1]
          Length = 737

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 16  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPIN-- 73

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 74  -SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 131

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 132 QDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 191

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 192 NVSAEIFVVCKGFK 205


>gi|68491995|ref|XP_710224.1| potential rRNA methyltransferase [Candida albicans SC5314]
 gi|73621935|sp|Q59KF3|SPB1_CANAL RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|46431386|gb|EAK90959.1| potential rRNA methyltransferase [Candida albicans SC5314]
          Length = 845

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|241956944|ref|XP_002421192.1| 2'-O-ribose RNA methyltransferase, putative; AdoMet-dependent rRNA
           methyltransferase, putative;
           S-adenosyl-L-methionine-dependent methyltransferase,
           putative [Candida dubliniensis CD36]
 gi|223644535|emb|CAX41353.1| 2'-O-ribose RNA methyltransferase, putative [Candida dubliniensis
           CD36]
          Length = 830

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIVQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|68491984|ref|XP_710229.1| potential rRNA methyltransferase [Candida albicans SC5314]
 gi|46431392|gb|EAK90964.1| potential rRNA methyltransferase [Candida albicans SC5314]
          Length = 853

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|269860030|ref|XP_002649738.1| tRNA (Gm34, Gm37) 2'-O-methyltransferase [Enterocytozoon bieneusi
           H348]
 gi|220066797|gb|EED44268.1| tRNA (Gm34, Gm37) 2'-O-methyltransferase [Enterocytozoon bieneusi
           H348]
          Length = 264

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+   +RARS +KL QI+EK+ +   ++  ++DL ++PGSWSQ  + +  +  N
Sbjct: 10  DVYYFMAKQNNYRARSIFKLKQIDEKYNVFNDTDINVLDLCAAPGSWSQYLSELKANRKN 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              ++A+D+ DM PI GV  +K    D+ + +FI++      + V+ D A    G  ++D
Sbjct: 70  INNIIAVDLQDMMPIEGVTIYK---DDITNEQFIKKLSNMQINRVICDGAPDVTGFYELD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGD--FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               + L +A+    L + N   +  F+ K F+G  T  I+   K++FQ+VI  KP ASR
Sbjct: 127 LYAQIDLLKASLKITLHVCNDYNNVIFISKLFRGKYTKYIIHYFKQYFQEVILTKPRASR 186

Query: 213 AESVEMFLLAK 223
           + S E F++ K
Sbjct: 187 STSNEAFIVCK 197


>gi|203284234|ref|YP_002221974.1| ribosomal RNA methyltransferase [Borrelia duttonii Ly]
 gi|203287772|ref|YP_002222787.1| ribosomal RNA methyltransferase [Borrelia recurrentis A1]
 gi|259494559|sp|B5RLD9|RLME_BORDL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|259494560|sp|B5RRD2|RLME_BORRA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|201083677|gb|ACH93268.1| ribosomal RNA methyltransferase [Borrelia duttonii Ly]
 gi|201084992|gb|ACH94566.1| ribosomal RNA methyltransferase [Borrelia recurrentis A1]
          Length = 193

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 11/198 (5%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           ++ D Y Q+A+ EG+ ARS YKL++I++K  +  S   I+D+G+SPGS+SQ A     +N
Sbjct: 3   NVFDEYSQKAKNEGYLARSVYKLIEIDKKFSLFSSGN-ILDIGASPGSFSQYAY----AN 57

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD---FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             N  +VA+D+ D+       F+      +LD + ++ I+  I     L++SD A  T G
Sbjct: 58  LKNGVLVAVDLNDVNLNFTSNFYFIKGNIYLD-EVYQKIK--IFSPYSLIVSDAAPSTTG 114

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D   + +L       A E L  GG+ L+K FQGG    I   LK  F+ V  V+P 
Sbjct: 115 NRLVDTSNSFNLNIRIFELACESLMRGGNLLIKVFQGGEEEQIFYKLKSCFRVVKKVRPK 174

Query: 210 ASRAESVEMFLLAKGFRK 227
           A R  S E++ LAK F K
Sbjct: 175 AVRKNSFEIYFLAKDFAK 192


>gi|322487855|emb|CBZ23099.1| putative FtsJ-like methyltransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 454

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 116/243 (47%), Gaps = 52/243 (21%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAA---RIT 89
           D Y +RA+ EG+RARSAYKLLQINE+  IL         VDL ++PGSWSQV A   ++ 
Sbjct: 10  DIYYRRAKEEGYRARSAYKLLQINEEFNILSPAEIRTGAVDLCAAPGSWSQVLAQHFKMI 69

Query: 90  GSN------------ANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR------- 129
           G+N            A   RVVA+D+ +M PI GV   + D   ++ + E IR       
Sbjct: 70  GANAAAAAAEGDSLLAQTPRVVAVDLQEMAPIDGVTLLQGDITSEVTAREIIRLLNAPTS 129

Query: 130 -----------------------QAIGGN---PDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                                   A+G +    D+VL D A    G  ++D      L  
Sbjct: 130 TGVTRTDDEPQPASSYFSSSAPSPALGASLRKADIVLCDGAPDVTGMHELDEYLQHHLLL 189

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           AA      +L  GG FL K F+G  T  ++   +  FQ+V  VKP +SR  S+E FLL +
Sbjct: 190 AALHITTFVLRAGGCFLTKMFRGPNTAFLVAKSELFFQQVRVVKPKSSRNASMESFLLCQ 249

Query: 224 GFR 226
           GFR
Sbjct: 250 GFR 252


>gi|302309076|ref|NP_986282.2| AFR734Cp [Ashbya gossypii ATCC 10895]
 gi|299790933|gb|AAS54106.2| AFR734Cp [Ashbya gossypii ATCC 10895]
          Length = 830

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++PGSW QVA+ +   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASNLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLNWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N ++ + ++ F KV   KP ASR
Sbjct: 130 QDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVFQQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|321474059|gb|EFX85025.1| hypothetical protein DAPPUDRAFT_300798 [Daphnia pulex]
          Length = 861

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 109/193 (56%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+R+A+KLLQ+N K + L+ +R ++DL ++PGSW QVA +       +
Sbjct: 10  DKFYHLAKETGYRSRAAFKLLQLNRKFEFLEKSRVVIDLCAAPGSWMQVAKQHMPV---S 66

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ ID+  M+PI G    + D      ++ +++ +     D+VL D A P +G   I 
Sbjct: 67  SLIIGIDLFPMKPIQGCLTLQEDITTEKCYQSLKKELTTWKADVVLHDGA-PNVGQNWIY 125

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  +A   A E L  GG F+ K F+    N ++ +L++ F++V   KP ASR 
Sbjct: 126 DAFIQNQLVLSALKLATEFLVKGGWFVTKIFRSKDYNSLMWVLRQLFKRVHSTKPHASRM 185

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ +G+R
Sbjct: 186 ESAEIFVICQGYR 198


>gi|255732365|ref|XP_002551106.1| hypothetical protein CTRG_05404 [Candida tropicalis MYA-3404]
 gi|240131392|gb|EER30952.1| hypothetical protein CTRG_05404 [Candida tropicalis MYA-3404]
          Length = 632

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLAAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|324513843|gb|ADY45670.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 370

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 7/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR------IT 89
           D Y + A+ EGWRARSA+KL+QI+++  I +   R VDL ++PGSWSQV ++        
Sbjct: 10  DIYYRLAKEEGWRARSAFKLMQIDDEFNIFEGVTRAVDLCAAPGSWSQVLSKRLYFGEKD 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPTI 148
               +  R+VA+D+  M P+ GV   + D  +  + E  I    G   DLV+ D A    
Sbjct: 70  EQKRSEVRIVAVDLQPMSPLPGVIQLQGDITESSTAESIISHFEGSKADLVVCDGAPDVT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA      +L   G F+ K F+    + +   LK  F++V   KP
Sbjct: 130 GLHSLDEYMQSQLILAALNITTFVLKESGTFIAKIFRAKNVSLLYAQLKFFFEEVYCAKP 189

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S E F++ K F
Sbjct: 190 RSSRQSSCEAFVVCKRF 206


>gi|268323180|emb|CBH36768.1| putative ribosomal RNA large subunit methyltransferase J
           [uncultured archaeon]
          Length = 204

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 107/195 (54%), Gaps = 8/195 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+RSA+KLLQIN K  ++++   ++DLG++PG WSQVA  + G   ++
Sbjct: 10  DRFYKSAKELGYRSRSAFKLLQINTKFGLIRAGDVVLDLGAAPGGWSQVAYGLVG---DS 66

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIG--GNP--DLVLSDMAYPTIGH 150
             V+++D+  ME I  +   K D   + ++   I+  +   G+   D V+SD++    G 
Sbjct: 67  GLVLSVDLQPMENIADIVILKRDIAKEQETLAAIKAVLNRKGHELVDAVISDLSPQLSGT 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R  D  R+  L  +A   A  +L   G+F+ K FQG   N+    +K  F+      P A
Sbjct: 127 RDYDQFRSSELSTSALNIASALLRNNGNFVAKIFQGAYYNEFYKCVKAKFRYTRAHSPAA 186

Query: 211 SRAESVEMFLLAKGF 225
           SR  S EM+++ KG+
Sbjct: 187 SRKGSAEMYVIGKGY 201


>gi|307183163|gb|EFN70073.1| Putative ribosomal RNA methyltransferase 1 [Camponotus floridanus]
          Length = 381

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 101/200 (50%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y ++A+ EGWRARSA+KLLQI+ +  I     + VDL ++PGSWSQV AR        
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDTECHIFDGVSKAVDLCAAPGSWSQVLARKLNENYKK 69

Query: 88  -ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAY 145
            +   NA+  ++VA+D+  M P+ GV   + D  + ++  + I        DLV+ D A 
Sbjct: 70  ALETGNASPPKIVAVDLQAMAPLEGVIQLQGDITNTNTAQQIIAHFDNTQADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L  GG F+ K F+    + +   L+  F  V  
Sbjct: 130 DVTGLHDMDIFIQSQLLLAALNITTHILRPGGTFVAKIFRAKDVSFLYAQLRIFFPYVYC 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ K +
Sbjct: 190 TKPSSSRNSSIEAFVVCKDY 209


>gi|6319796|ref|NP_009877.1| Spb1p [Saccharomyces cerevisiae S288c]
 gi|6226708|sp|P25582|SPB1_YEAST RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase; AltName: Full=Suppressor of PAB1
           protein 1
 gi|1907120|emb|CAA42391.1| putative methylase [Saccharomyces cerevisiae]
 gi|151943780|gb|EDN62080.1| AdoMet-dependent rRNA methyltransferase [Saccharomyces cerevisiae
           YJM789]
 gi|285810648|tpg|DAA07432.1| TPA: Spb1p [Saccharomyces cerevisiae S288c]
          Length = 841

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASKLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L + G F+ K F+    N ++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|256270950|gb|EEU06076.1| Spb1p [Saccharomyces cerevisiae JAY291]
          Length = 841

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASKLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L + G F+ K F+    N ++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|307109488|gb|EFN57726.1| hypothetical protein CHLNCDRAFT_142970 [Chlorella variabilis]
          Length = 325

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 102/202 (50%), Gaps = 15/202 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI++   I    R +VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDDAFHIFAGVRHVVDLCAAPGSWSQVLSRRLYLPAVA 69

Query: 93  ANNT-----RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDM 143
           A  T     ++VA+D+  M PI GV   +    D+ S    RQ I    G + DLV+ D 
Sbjct: 70  AGRTGEQLPKIVAVDLQPMAPIEGVTQLQG---DITSEATARQVISHFHGHHADLVVCDG 126

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L  GG  + K F+G     +   LK  F  V
Sbjct: 127 APDVTGLHDMDEFVQGQLILAALAIVAHVLVPGGTLVAKVFRGRDIALLYSQLKIFFPDV 186

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SR  S+E F++ + +
Sbjct: 187 TVAKPKSSRNSSIEAFVVCRRY 208


>gi|332025843|gb|EGI65999.1| Putative ribosomal RNA methyltransferase 1 [Acromyrmex echinatior]
          Length = 397

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 10/202 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--- 92
           D Y ++A+ EGWRARSA+KLLQI+ +  I     + VDL ++PGSWSQV AR    N   
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDSECHIFDGVSKAVDLCAAPGSWSQVLARKLTENYKK 69

Query: 93  ------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
                 A+  ++VA+D+  M P+ GV   + D  +  + E  I        DLV+ D A 
Sbjct: 70  ALEKGPASKPKIVAVDLQAMAPLEGVIQLQGDITNSSTAEQIIAYFDNSRADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA   A  +L  GG F+ K F+    + +   L+  F  V  
Sbjct: 130 DVTGLHDMDIFIQSQLLLAALNIATYILRPGGTFVAKIFRAKDVSLLYAQLRIFFPYVYC 189

Query: 206 VKPVASRAESVEMFLLAKGFRK 227
            KP +SR  S+E F++ K + +
Sbjct: 190 TKPSSSRNSSIEAFVVCKDYSQ 211


>gi|219851444|ref|YP_002465876.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosphaerula
           palustris E1-9c]
 gi|254809556|sp|B8GG79|RLME_METPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|219545703|gb|ACL16153.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosphaerula
           palustris E1-9c]
          Length = 203

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 6/190 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D   +RA  EG+R+R+AYKL +I E+  I++ +  IVDLG++PGSW QV   +T      
Sbjct: 8   DKVYRRAMNEGFRSRAAYKLQEIQERFSIIREDDNIVDLGAAPGSWLQVERTLT-----K 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            +V+ +D+  +  I GV     D    +  + ++  + G  ++VL D +    GH+  D 
Sbjct: 63  GKVLGVDLNPIPSIDGVMTVVGDLTTSEVQQQVKDLV-GVVNVVLCDASPKLSGHKCYDQ 121

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R + L E A  FA   +  GG+  +K+FQG   +++L  +KKHF  V      ++R  S
Sbjct: 122 ARAIGLGEDALMFAARTMKQGGNMAMKSFQGEMFHELLEEVKKHFYVVKTFHTKSTRRGS 181

Query: 216 VEMFLLAKGF 225
            E++++AK F
Sbjct: 182 TEIYIVAKNF 191


>gi|194764569|ref|XP_001964401.1| GF23069 [Drosophila ananassae]
 gi|190614673|gb|EDV30197.1| GF23069 [Drosophila ananassae]
          Length = 405

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 14/200 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E   +L    R VDL ++PGSWSQV A+     ++ 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFHLLDGLHRAVDLCAAPGSWSQVLAKHMYEPLSE 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GGNPDLVLSDMAY 145
            +    +++A+D+  M PI GV   + D     S E   +AI     G    +V+ D A 
Sbjct: 70  EDKKKVKIIAVDMQGMAPIEGVTQMREDI----SKESTAEAIINFFEGEKAQIVVCDGAP 125

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            + G    D    + L   A   A  +L  GG F+ K ++   T+     +K+ F+ V  
Sbjct: 126 DSTGMHDFDSYVQIELVITAISIATYILEEGGSFVSKIYRCDKTSKAYTQMKRFFKDVCV 185

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP ASR  S+E F++ + F
Sbjct: 186 FKPSASRNSSIEAFVIGRQF 205


>gi|260809478|ref|XP_002599532.1| hypothetical protein BRAFLDRAFT_279878 [Branchiostoma floridae]
 gi|229284812|gb|EEN55544.1| hypothetical protein BRAFLDRAFT_279878 [Branchiostoma floridae]
          Length = 321

 Score =  104 bits (260), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 6/196 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D + + A+  G+RARSA+KL+Q+N K+  LQ ++ +VDL ++PG W QVAA+    
Sbjct: 9   QHRKDKFYKLAKETGYRARSAFKLIQLNRKYGFLQRSKVLVDLCAAPGGWLQVAAKYMPV 68

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGH 150
              ++ +V ID++ ++PI  V   + D       + +R+ +     D VL D A P +G 
Sbjct: 69  ---SSLLVGIDLVPIKPIPNVSTIQADITTDKCRQALRKELATWQADCVLHDGA-PNVGS 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D      L  AA   A E+L+ GG F+ K F+    + +L + ++ F+ V   KP 
Sbjct: 125 NWLKDASEQAQLVLAALRLATEVLSKGGCFVTKVFRSKDYHALLWVFQQLFKLVHATKPQ 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +GF
Sbjct: 185 ASRHESAEIFVVCEGF 200


>gi|300124014|emb|CBK25285.2| unnamed protein product [Blastocystis hominis]
          Length = 840

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+RARSA+KL+Q+N +   L     ++DL ++PG W QVAA+     +  
Sbjct: 10  DKWYALAKQQGYRARSAFKLIQLNRQFNFLSKAHVLIDLCAAPGGWCQVAAKQMPIEST- 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
             ++ +D+L ++PI  VK F+ D   L   + I++ + G + D+VL D A    G    D
Sbjct: 69  --IIGVDLLPIKPIHNVKTFQEDITTLSCRDVIKRELHGKHADVVLHDGAPNVGGGWSKD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   +   A+E +  G  F+ K F+    + ++ +  + F+KV   KP ASR E
Sbjct: 127 AFDQNSLVLHSLRLAVEFMTKGATFVTKVFRSADYHALIYIFNQLFEKVQATKPAASRTE 186

Query: 215 SVEMFLLAKGFR 226
           S E+F++ + ++
Sbjct: 187 SAEIFVVCQNYK 198


>gi|300121815|emb|CBK22389.2| unnamed protein product [Blastocystis hominis]
          Length = 840

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+RARSA+KL+Q+N +   L     ++DL ++PG W QVAA+     +  
Sbjct: 10  DKWYALAKQQGYRARSAFKLIQLNRQFNFLSKAHVLIDLCAAPGGWCQVAAKQMPIEST- 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
             ++ +D+L ++PI  VK F+ D   L   + I++ + G + D+VL D A    G    D
Sbjct: 69  --IIGVDLLPIKPIHNVKTFQEDITTLSCRDVIKRELHGKHADVVLHDGAPNVGGGWSKD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   +   A+E +  G  F+ K F+    + ++ +  + F+KV   KP ASR E
Sbjct: 127 AFDQNSLVLHSLRLAVEFMTKGATFVTKVFRSADYHALIYIFNQLFEKVQATKPAASRTE 186

Query: 215 SVEMFLLAKGFR 226
           S E+F++ + ++
Sbjct: 187 SAEIFVVCQNYK 198


>gi|156847842|ref|XP_001646804.1| hypothetical protein Kpol_2002p16 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117485|gb|EDO18946.1| hypothetical protein Kpol_2002p16 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 844

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DKYYYLAKEKGYRARSSFKVIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASKLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N ++ + ++ F KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ K F+
Sbjct: 190 NVSAEIFVVCKNFK 203


>gi|255722854|ref|XP_002546361.1| hypothetical protein CTRG_05839 [Candida tropicalis MYA-3404]
 gi|240130878|gb|EER30440.1| hypothetical protein CTRG_05839 [Candida tropicalis MYA-3404]
          Length = 255

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 22/218 (10%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQ 83
           S ++++NR   D +V + +   +++R+A+KL +I++K  I ++  R IVDLG +PG+W+Q
Sbjct: 24  SLKNYVNRVQGDSFVSQRKTSLYKSRAAFKLEEIDDKLHIFKNGTRNIVDLGFAPGAWTQ 83

Query: 84  VAARITGSNANNTRVVAIDILDMEPILG-----------------VKFFK-FDFLDLDSW 125
           VA     S      ++ +DI    P+ G                 ++FFK  D LD  ++
Sbjct: 84  VAVNRLESKNLPYNILGVDINPASPVRGCHYIQGDVTKKSTQTKILEFFKRCDVLDKITF 143

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E   +    + DLV+SDM   T G    DH  ++ LC AA   A   L  G DF+VK F 
Sbjct: 144 E---EDEYKHIDLVMSDMMVNTTGSSVNDHYGSIYLCNAALHLAFHQLKPGKDFVVKIFN 200

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           G   +     LK  F +V  VKP AS+  S E++L+ +
Sbjct: 201 GSELDSFQARLKLMFAQVHAVKPRASKDVSSELYLVGR 238


>gi|224532294|ref|ZP_03672926.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           valaisiana VS116]
 gi|224511759|gb|EEF82165.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           valaisiana VS116]
          Length = 192

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G++PGS+SQ A +      
Sbjct: 4   LDDEYSQKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGAAPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D  ++ +    F K D    D+   I     G   LV+SD+A  T G+R
Sbjct: 59  KKGILVSVDINDIGLKYVNNFYFVKGDIFLEDTVSKINMF--GPYSLVISDVAPRTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ L+K FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLIKVFQGGDEMQIFKRFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|212704983|ref|ZP_03313111.1| hypothetical protein DESPIG_03051 [Desulfovibrio piger ATCC 29098]
 gi|212671647|gb|EEB32130.1| hypothetical protein DESPIG_03051 [Desulfovibrio piger ATCC 29098]
          Length = 220

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 9/199 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +++ K ++ +   R++DLG++PGSWS  AA   G 
Sbjct: 2   KEYRDHYFLKAKRENYPARSVYKLKELDAKFKLFRQGMRVLDLGAAPGSWSLGAAEKVGQ 61

Query: 92  NANNTRVVAIDILDMEPILG--VKFFKFDFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTI 148
                 V+  DI   E      V F + D  +  D++E   + +G   D+V+SDMA  T 
Sbjct: 62  RG---LVLGCDIQTTETAFPPQVTFMQEDVFNRSDAFEARLREMGPF-DVVMSDMAPRTT 117

Query: 149 GHRKIDHLRTMSL-CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G +  D  R++ L CEA     L  L  GG F+VK F G    ++L  +++ F+ V   K
Sbjct: 118 GTKFTDQARSLELACEALEVARLH-LKPGGSFIVKIFMGPDIQEMLQPMRRAFKAVKSFK 176

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SRAES E F +  GF+
Sbjct: 177 PKSSRAESKETFFVGMGFK 195


>gi|307208282|gb|EFN85714.1| Putative ribosomal RNA methyltransferase 1 [Harpegnathos saltator]
          Length = 361

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 11/201 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--- 92
           D Y +RA+ EGWRARSA+KLLQI+++ +I     + +DL ++PGSWSQV A     N   
Sbjct: 10  DIYYRRAKEEGWRARSAFKLLQIDQECRIFNGVSKTIDLCAAPGSWSQVLALKLNENYKK 69

Query: 93  -------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMA 144
                  A+  ++VA+D+  M P+ GV   + D  + ++  E I        DLV+ D A
Sbjct: 70  ALEESSAASPPKIVAVDLQAMAPLEGVIQLQGDITNTNTAKEIIAHFDNTQADLVVCDGA 129

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  AA      +L  GG F+ K F+      +   L+  F  V 
Sbjct: 130 PDVTGLHDMDIFIQSQLLLAALNITTHILRPGGTFVAKIFRAKDVTFLYAQLRIFFSYVY 189

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR  S+E F++ K +
Sbjct: 190 CAKPSSSRNSSIEAFVVCKNY 210


>gi|71746024|ref|XP_822237.1| FtsJ-like methyltransferase [Leishmania major strain Friedlin]
 gi|321438176|emb|CBZ11928.1| putative FtsJ-like methyltransferase [Leishmania major strain
           Friedlin]
          Length = 459

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 117/245 (47%), Gaps = 54/245 (22%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQV-------- 84
           D Y ++A+ EG+RARSAYKLLQI+E+  IL         VDL ++PGSWSQV        
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQIHEEFNILDPAEIRTGAVDLCAAPGSWSQVLAQHFKMI 69

Query: 85  AARITGSN------ANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR-------- 129
           +A +T ++      A   RVVA+D+ +M PI GV   + D   ++ + E IR        
Sbjct: 70  SANLTAASEGDSLPAQTPRVVAVDLQEMAPIDGVTLLQGDITSEVTAREIIRLLNAPTST 129

Query: 130 -------------------------QAIGGNP---DLVLSDMAYPTIGHRKIDHLRTMSL 161
                                     A+G +P   D+VL D A    G  ++D      L
Sbjct: 130 GVVRTDDEQQQPQPASSSFSSSAPSPALGASPRKADIVLCDGAPDVTGMHELDEYLQHHL 189

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
             AA      +L  GG FL K F+G  T  ++   +  FQ+V  VKP +SR  S+E FLL
Sbjct: 190 LLAALHITTFVLRAGGCFLTKIFRGPNTAFLVAKSQLFFQQVRVVKPKSSRNASMESFLL 249

Query: 222 AKGFR 226
            +GFR
Sbjct: 250 CQGFR 254


>gi|322706026|gb|EFY97608.1| AdoMet-dependent rRNA methyltransferase spb1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 840

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA +      N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVM---PMN 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + +V +D+  ++PI  V  F+ D    +    IRQ +     D VL D A P +G     
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTENCRATIRQHLKTWKADTVLHDGA-PNVGTAWAQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +L + F KV   KP +SR 
Sbjct: 129 DSFNQAELALQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|254582987|ref|XP_002499225.1| ZYRO0E06952p [Zygosaccharomyces rouxii]
 gi|238942799|emb|CAR30970.1| ZYRO0E06952p [Zygosaccharomyces rouxii]
          Length = 291

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 5/195 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQVAAR--ITGS 91
           D Y ++A+ +G+RARSA+KLLQ+NE+   L     +R+VDL ++PGSWSQV +R      
Sbjct: 10  DLYYRKAKEQGYRARSAFKLLQLNEEFHFLDDPNLKRVVDLCAAPGSWSQVLSRKLFDKD 69

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGH 150
           +  + ++VA+D+  M PI  V   + D     +   I +  G +  D V SD A    G 
Sbjct: 70  DYTDRQIVAVDLQAMMPIDHVTTLQADITHPRTLHQILELFGNHRADFVCSDGAPDVTGL 129

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  +A    + +L  GG F+ K F+G   + I   L   F +V   KP +
Sbjct: 130 HDLDEYVQQQLIMSALQLTVCILKRGGTFVAKIFRGRDIDLIYAQLGYLFDQVTCAKPRS 189

Query: 211 SRAESVEMFLLAKGF 225
           SR  S+E F++ +G+
Sbjct: 190 SRGSSLEAFVVCQGY 204


>gi|322699763|gb|EFY91522.1| AdoMet-dependent rRNA methyltransferase spb1 [Metarhizium acridum
           CQMa 102]
          Length = 840

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA +      N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMPV---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + ++ +D+  ++PI  V  F+ D    +    IRQ +     D VL D A P +G     
Sbjct: 70  SLIIGVDLAPIKPIPKVITFQSDITTENCRATIRQHLKTWKADTVLHDGA-PNVGTAWAQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +L + F KV   KP +SR 
Sbjct: 129 DSFNQAELALQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|190347121|gb|EDK39337.2| hypothetical protein PGUG_03435 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+ +   N  
Sbjct: 14  DKYYFLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASNLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNCITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLTLGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|146416169|ref|XP_001484054.1| hypothetical protein PGUG_03435 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+ +   N  
Sbjct: 14  DKYYFLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASNLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNCITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLTLGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|213408265|ref|XP_002174903.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Schizosaccharomyces
           japonicus yFS275]
 gi|212002950|gb|EEB08610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Schizosaccharomyces
           japonicus yFS275]
          Length = 217

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL--GSSPGSWSQ 83
           SR W     +D + + ++   +R+R+AYKL+ +N KH I      ++DL  G +PGSWSQ
Sbjct: 8   SRTWAKARASDCFSKLSKKNNYRSRAAYKLIDLNRKHHIFNEGDTVIDLVKGFAPGSWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS----WEFIRQAIGGNP--- 136
           VA +  G       V+ +D+  + P  GV     D  +  +    ++ +++  G      
Sbjct: 68  VALKAVGPYG---MVIGVDVRFVNPPQGVHAIIGDVKNNVTVNGVYQLLKKHYGNTQNNQ 124

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDM +   G    DH  ++SLC AA  F+  +L   G  + K ++G   N     
Sbjct: 125 CDVVISDMFHNATGIPFRDHTISISLCRAALEFSEHVLRSKGILICKYYKGIEENRFFKE 184

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLA 222
           L+ HF++VI  KP ASR ES E + + 
Sbjct: 185 LQSHFREVIRAKPKASRKESKENYFVC 211


>gi|153003960|ref|YP_001378285.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp.
           Fw109-5]
 gi|189044084|sp|A7H9A5|RLME_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|152027533|gb|ABS25301.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp.
           Fw109-5]
          Length = 276

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 11/196 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ EG RARSA+K+ +I  +H++L+  + ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKEGLRARSAFKIDEILRRHRLLRKGQAVLDLGAAPGGFLQILADEVGETG- 66

Query: 95  NTRVVAIDILDMEPI--LG---VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
               VA+ + D+EP+  LG   VK    D L   + + IR    G   LV SDMA  TIG
Sbjct: 67  ----VAVGV-DLEPVRRLGKPWVKTAIVDLLSPGALDQIRTLHAGPFQLVTSDMAPKTIG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A + L  GG F+ K F GG    +   L+  F +V  ++P 
Sbjct: 122 VKITDEARSLELVRMALDVAEKTLAPGGAFVAKVFMGGEFPVLKKELQARFDEVHVIRPE 181

Query: 210 ASRAESVEMFLLAKGF 225
           A R  S E+++L KG 
Sbjct: 182 AVRESSYEVYVLGKGL 197


>gi|241959530|ref|XP_002422484.1| 2'O-ribose methyltransferase, putative; ribosomal RNA
           methyltransferase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223645829|emb|CAX40492.1| 2'O-ribose methyltransferase, putative [Candida dubliniensis CD36]
          Length = 319

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 21/227 (9%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLG 75
           V+N+S Q   R +++   ND Y  + +   +++R+A+KL +I++K++I  +  + IVDLG
Sbjct: 68  VRNKSKQNV-RKYIDSVSNDTYANKRRQSLFKSRAAFKLEEIDKKYKIFTKKTKNIVDLG 126

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR------ 129
            +PG+W+Q A           +++ +DI    P+ G  + + D ++  +   IR      
Sbjct: 127 FAPGAWTQFAVHRLEEQDQPHKILGVDINLATPVKGCHYMQGDIMNKSTHAKIRTFFEKS 186

Query: 130 -------QAIGGNP------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                    I  N       DL++SDM     G  ++DH+  M LC AA + A   L   
Sbjct: 187 RFQESQNSQIDTNSNEEKQLDLIMSDMMVDCTGSGQVDHIGNMELCTAALYLAYSELRSE 246

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            D ++K + G         +   F+KVIH+KP AS+  S E++++ +
Sbjct: 247 KDMILKVWSGSELKLFEARMNMMFKKVIHIKPDASKDRSSELYMVGR 293


>gi|86157470|ref|YP_464255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123499845|sp|Q2IPT3|RLME_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|85773981|gb|ABC80818.1| 23S rRNA Um-2552 2'-O-methyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 267

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 11/197 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ +G RARSA+K+ +I  +H++L     ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILAEAVGEKG- 66

Query: 95  NTRVVAIDILDMEPI--LGVKFFKFDFLDL---DSWEFIRQAIGGNPDLVLSDMAYPTIG 149
               VA+ + D+EPI  LG ++ +   +DL   D+ + IR    G   LV SDMA  TIG
Sbjct: 67  ----VAVGV-DLEPIRNLGKRWVRTAIVDLLAPDALDKIRLLHDGRFRLVTSDMAPKTIG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A ++L  GG F+ K F GG    +   L+  F  +  ++P 
Sbjct: 122 IKVTDEARSLELVRMALSVAEQVLVPGGAFVAKVFMGGDFPALKRELQGRFAAMHVIRPE 181

Query: 210 ASRAESVEMFLLAKGFR 226
           A R  S E+++L  GFR
Sbjct: 182 AVRESSYEVYVLGTGFR 198


>gi|218888283|ref|YP_002437604.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|226703295|sp|B8DNJ4|RLME_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|218759237|gb|ACL10136.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 201

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ E + ARS YKL +I+ + ++ +   +++DLG++PGSWS  AA   G     
Sbjct: 6   DHYFLKAKQENYPARSIYKLKEIDNRFKLFRQGMKVLDLGAAPGSWSLGAAERVGPKG-- 63

Query: 96  TRVVAIDI--LDMEPILGVKFFKFDFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            RV+A D+   D +    V F + D  +  +++E    A+G    +V+SDMA  T G R 
Sbjct: 64  -RVLACDLQTTDTQFPPNVTFMQEDVFNRSEAFEDALAAMGPF-HVVISDMAPRTTGTRF 121

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R++ LC  A   A   L  GG F+VK F G     +L  L+  F+ V   KP +SR
Sbjct: 122 TDQARSLELCIEALAVADHCLIKGGSFVVKIFMGPDVKQLLDALRARFETVKTFKPKSSR 181

Query: 213 AESVEMFLLAKGFR 226
            ES E F +  G+R
Sbjct: 182 VESKETFYVCLGYR 195


>gi|302510170|ref|XP_003017045.1| hypothetical protein ARB_05339 [Arthroderma benhamiae CBS 112371]
 gi|291180615|gb|EFE36400.1| hypothetical protein ARB_05339 [Arthroderma benhamiae CBS 112371]
          Length = 309

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 34/225 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+ ++E+     H    S RR+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  ----------------TGSNANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE 126
                           TG  A   R      +V++D+  M P+ G+   + D     +  
Sbjct: 70  RGESFGRRQYELDRGGTGDVAEEVRPRRDVKIVSVDLQPMAPLEGITTLQADITHPSTVP 129

Query: 127 FIRQAIGGNP-----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +  A+         DLVLSD A    G   +D      L  AA   A+ +L  GG F+ 
Sbjct: 130 LLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILRPGGTFVA 189

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 190 KIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 234


>gi|242009665|ref|XP_002425603.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
 gi|212509496|gb|EEB12865.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
          Length = 334

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 19/204 (9%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSN-- 92
           D Y + A+ EGWRARSA+KLLQINE+  I ++  R+VDL      WSQV +R + G +  
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQINEEFNIFENVTRVVDL------WSQVLSRKLYGKDMS 63

Query: 93  ---------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                    +N+T +VA+D+  M P+ GV   + D   L + + I +   G+P  LV+ D
Sbjct: 64  KSVDSNQKLSNDTIIVAVDLQPMAPLPGVIQIQGDITKLSTAKQIIEHFSGSPAQLVVCD 123

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   ID      L  AA      +L  GG F+ K F+G     I   LK  F+ 
Sbjct: 124 GAPDVTGLHDIDEFVQSQLLLAAFNITSHILMKGGTFVAKIFRGKDITLIYSQLKIFFKF 183

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S+E F++ + ++
Sbjct: 184 VTVAKPRSSRNSSIEAFVVCQNYQ 207


>gi|225619180|ref|YP_002720406.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
           hyodysenteriae WA1]
 gi|259494561|sp|C0QX75|RLME_BRAHW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|225213999|gb|ACN82733.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
           hyodysenteriae WA1]
          Length = 193

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 22/204 (10%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARITG 90
           + + D Y ++A+ E ++ARS +KL +   K + ++++  ++D+G SPGS+SQ +  +I  
Sbjct: 2   KKVQDFYFKKAKEENYKARSVFKLEEAQNKFKFIKASDNVLDVGCSPGSFSQYMLNKILK 61

Query: 91  SNANNTRVVAIDILD-------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
           S +    VV +DIL           ILG      D  D+D   F         D+V+SD 
Sbjct: 62  SGS----VVGVDILPNSFAHQRFTFILG------DIKDMDVTTFNNTLF----DVVVSDA 107

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T   R+ +H R++SLC +    A E+L   G+F +K F G    D    L ++F  V
Sbjct: 108 MPNTTSDRETNHFRSISLCRSIFDLAKEVLKENGNFFIKVFDGKDLQDFKKELSEYFNSV 167

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP +SR ES E+FL  K F+K
Sbjct: 168 NVFKPKSSRDESREIFLFCKNFKK 191


>gi|66824025|ref|XP_645367.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
 gi|74860452|sp|Q86AH1|RRMJL_DICDI RecName: Full=Probable ribosomal RNA methyltransferase fsjB;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
           fsjB
 gi|60473489|gb|EAL71433.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
          Length = 640

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 59/253 (23%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAA 86
           DW+ R + DPYV  AQ     +R+AYK++ I+E+ Q+ +  + +VDLG++PG WS+ +  
Sbjct: 389 DWMKRQMTDPYVAMAQKNDLISRAAYKIINIDEQIQLFKPGQIVVDLGAAPGGWSKYIQE 448

Query: 87  RITGSNANNTRVVAIDI-----LDMEPIL-----------------------GVKFFKFD 118
           R+T    N   V+++D      LD +  +                        +K +K  
Sbjct: 449 RVT----NRGLVISVDTSSNFQLDKDCFIHGDFTLTETQNKIFELTKFKSLNDLKLYKHS 504

Query: 119 FLDLDSW--------------------------EFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            +  DS                              +Q      D+V+SDMA    G ++
Sbjct: 505 LIHSDSKIQNLIENGGANGNGSGNGDLQKQPIDNMFKQKSACYVDVVVSDMAPSYSGLQQ 564

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH R + L   A FFA + L  GG F+ K  +GG       LL+ +F  V  +KP ASR
Sbjct: 565 VDHSRLIDLQRLALFFAFKTLKKGGTFVCKVSRGGEEKKFFKLLESNFISVKSMKPGASR 624

Query: 213 AESVEMFLLAKGF 225
           +ES E++ + K +
Sbjct: 625 SESTEIYYIGKNY 637


>gi|167378804|ref|XP_001734938.1| ribosomal RNA methyltransferase [Entamoeba dispar SAW760]
 gi|165903298|gb|EDR28886.1| ribosomal RNA methyltransferase, putative [Entamoeba dispar SAW760]
          Length = 231

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+ EG+RARSA+KL+ +     I      +VDL ++PGSWSQV ++      N 
Sbjct: 6   DKFHRQAKQEGYRARSAFKLIDVERDFHIFDGVHNVVDLCAAPGSWSQVLSKTIKEPKN- 64

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             +V++D+ D+ PI GVK  K D     +  E +     G  DL++ D A    G   ID
Sbjct: 65  --IVSVDLQDIAPIEGVKLVKGDITKGSTAKEVMSHFTDGKADLIICDGAPDVTGIHDID 122

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L +AA      +L  GG F+ K F       +    K  F+ V   KP +SR+ 
Sbjct: 123 EANQWILMQAAFSIMAVVLKQGGSFVAKIFVENEYPHLYFQFKSVFESVTIYKPESSRSS 182

Query: 215 SVEMFLLAKGFRK 227
           S E F++ KGF +
Sbjct: 183 SYEHFVVCKGFNE 195


>gi|67608071|ref|XP_666854.1| cell division protein [Cryptosporidium hominis TU502]
 gi|54657922|gb|EAL36626.1| cell division protein [Cryptosporidium hominis]
          Length = 275

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA--------------- 86
           A+ EG+RARSAYKL+QI+EK+ I     R VDL ++PGSWSQV +               
Sbjct: 16  AKQEGFRARSAYKLIQIDEKYNIFDKVTRAVDLCAAPGSWSQVLSTKLLNNSEYNEGQPK 75

Query: 87  ---RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSD 142
              +I  +N     +VA+D+ +M PI GV   K D    L     +    G   DLVL D
Sbjct: 76  ETDKIASNNEEAPLIVAVDLQEMAPIYGVNIIKGDITSRLTVSRILEYFQGKKADLVLCD 135

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            +    G   ID      L  ++     +++  GG F+ K F+G   + I   +  +F+ 
Sbjct: 136 GSPDVTGLHDIDEYIQNQLLISSLSITSKIMRKGGTFVAKIFRGENISRIYQQMFCYFEL 195

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S+E F++ + F+
Sbjct: 196 VDCCKPESSRNSSLEAFIVCRYFK 219


>gi|307353428|ref|YP_003894479.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoplanus
           petrolearius DSM 11571]
 gi|307156661|gb|ADN36041.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoplanus
           petrolearius DSM 11571]
          Length = 199

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +++ EG+R+R+AYKLL I ++  I++ +  IVDLG++PGSW QV   +T     +
Sbjct: 8   DKYYNKSRSEGYRSRAAYKLLDIQKRFGIIRDDDNIVDLGAAPGSWMQVLRDMT-----S 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             +V +D+  + PI        DF      E I   I    ++V+ D +    G +  D 
Sbjct: 63  GAIVGVDLNPIAPIENTIQITGDFTTEKIQEKIISHI-HEVNVVVCDASPKLSGSKSYDQ 121

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R + L   A  FA  +L  GG+F++K+FQG   +++L  +++ F  V   +  ASR  S
Sbjct: 122 ARAIGLNHEAFEFARRVLKPGGNFVIKSFQGEMFSELLNDIRESFYSVKVYRTTASRRGS 181

Query: 216 VEMFLLAKGFR 226
            E +++AK FR
Sbjct: 182 TETYIIAKNFR 192


>gi|328873742|gb|EGG22109.1| rRNA methyltransferase [Dictyostelium fasciculatum]
          Length = 366

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 116/247 (46%), Gaps = 46/247 (18%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S  W+ R + D +V  A+ E + +R+A+KL +I++K +IL+    I+DLG+SPG +SQV
Sbjct: 84  TSDKWVKRQMCDRFVSMAREENYVSRAAFKLEEIDDKFKILKYGSTIIDLGASPGGFSQV 143

Query: 85  AARITGSNANNTR------------------------VVAIDI------LDMEPILGV-- 112
           A +       NT                         V+++DI      L      G+  
Sbjct: 144 AQKRCYFQTINTTLKSSTTNKNNQQNNQNQLKKRKGLVISVDINGEKFELYQSEEEGIAI 203

Query: 113 -----KFFKFDFLDLDSWEFIRQAIGGNP-------DLVLSDMAYPTIGHRKIDHLRTMS 160
                 F   DF    + + IRQ +  N        D V+SDMA    G + +DH R +S
Sbjct: 204 EDRYTNFICGDFKLASTKQQIRQLLALNNKKTIASVDAVISDMAPSYCGVQSLDHDRLIS 263

Query: 161 LCEAATFFALE--MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           L   A  FA+   +L  GG F+ K  +GG  N +   +K HFQ V   KP ASR ES E+
Sbjct: 264 LASDAFEFAISGNILKKGGSFVCKVSRGGQENLLFQRIKSHFQTVKSFKPKASRQESTEI 323

Query: 219 FLLAKGF 225
           F +A  F
Sbjct: 324 FFVALNF 330


>gi|153801759|ref|ZP_01956345.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-3]
 gi|124122724|gb|EAY41467.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-3]
          Length = 152

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 12/147 (8%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDL--- 138
            AA++ G      RV+A D+L ME I GV F + DF +    E +  A+     PD+   
Sbjct: 68  FAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFRE----EVVLNALLDRIQPDMVDV 120

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAA 165
           V+SDMA    G+  +D  R M L E A
Sbjct: 121 VMSDMAPNMAGNLSVDQPRAMYLVELA 147


>gi|195110569|ref|XP_001999852.1| GI24754 [Drosophila mojavensis]
 gi|193916446|gb|EDW15313.1| GI24754 [Drosophila mojavensis]
          Length = 382

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D + + A+ +GWRARSA+KLLQ +E   +L+   R VDL ++PG WSQV ++      + 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQADETFNLLEGLTRAVDLCAAPGGWSQVLSKRMYEPRSE 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
            +    +++A+D+  M PI GV   + D   +  + E I+   G   +LV++D A    G
Sbjct: 70  KDREQVKIIAVDMQGMAPIDGVTQLRADITKESTAEEIIKFFDGKKAELVVTDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +    A  +L  GG F+ K ++   T+ +   L++ F+ V   KP 
Sbjct: 130 LHDWDAYMQAELLLSGLSIATYILEEGGTFMGKVYRAANTSRVYLQLQRFFKDVCLFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR+ S+E F++ + F
Sbjct: 190 ASRSSSIEAFVVCRQF 205


>gi|66358984|ref|XP_626670.1| ybr061c-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
 gi|46228392|gb|EAK89291.1| ybr061c-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
          Length = 296

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA--------------- 86
           A+ EG+RARSAYKL+QI+EK+ I     R VDL ++PGSWSQV +               
Sbjct: 37  AKQEGFRARSAYKLIQIDEKYNIFDKVTRAVDLCAAPGSWSQVLSTKLLNNSEYNEGQPK 96

Query: 87  ---RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSD 142
              +I  +N     +VA+D+ +M PI GV   K D    L     +    G   DLVL D
Sbjct: 97  ETDQIDSNNGEAPLIVAVDLQEMAPIYGVNIIKGDITSQLTVSRILEYFQGKKADLVLCD 156

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            +    G   ID      L  ++     +++  GG F+ K F+G   + I   +  +F+ 
Sbjct: 157 GSPDVTGLHDIDEYIQNQLLVSSLSITSKIMRKGGTFVAKIFRGENISRIYQQMFCYFEL 216

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S+E F++ + F+
Sbjct: 217 VDCCKPESSRNSSLEAFIVCRYFK 240


>gi|33519574|ref|NP_878406.1| cell division protein 23S rRNA methyltransferase FtsJ [Candidatus
           Blochmannia floridanus]
 gi|81666687|sp|Q7VQM8|RLME_BLOFL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33517237|emb|CAD83620.1| cell division protein 23S rRNA methyltransferase FtsJ [Candidatus
           Blochmannia floridanus]
          Length = 206

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           ++  D Y  +AQ +  R+RS +KL  I+   ++L+    ++DLGS+PG WS   + +   
Sbjct: 8   KYFIDQYALQAQNQKLRSRSWFKLQSIDRLDKLLKQGMTVIDLGSTPGGWS---SYVIKQ 64

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGH 150
            +N   +V+ DIL M+ I GVKF + D  +++    I   I      +VLSDM+  T G 
Sbjct: 65  ISNLGTIVSCDILPMKKIAGVKFLQGDCSNINFLNEIDLKIKHKRAQVVLSDMSPNTTGI 124

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D  +++ L + A       L  GG FLVK FQG   +  L  LK  F KV   KP +
Sbjct: 125 STVDVCKSIYLGKIALNMCCRFLAPGGSFLVKIFQGDGFDQYLYNLKCLFHKVKVRKPSS 184

Query: 211 SRAESVEMFLLAKGFR 226
           SR+ S E+++++K F+
Sbjct: 185 SRSHSREVYIVSKDFK 200


>gi|291228520|ref|XP_002734226.1| PREDICTED: Putative rRNA methyltransferase 3-like [Saccoglossus
           kowalevskii]
          Length = 261

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+RARSA+KLLQ+N K Q LQ +R ++DL ++PG W QVA   +     +
Sbjct: 13  DKFYKLAKETGYRARSAFKLLQLNRKFQFLQKSRVLIDLCAAPGGWLQVA---SNHMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ + PI      + D         +R  +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIRPIPNTITVQADITTEKCRSLLRNELKDWKADIVLNDGA-PNVGKNWLH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     SL   A   A + L  GG F+ K F+      ++ + K+ F+KV   KP ASR+
Sbjct: 129 DAFTQASLTLKALKLASDFLTQGGWFVTKVFRSKDYQPLMWVFKQLFKKVHATKPPASRS 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +G+
Sbjct: 189 ESAEIFVVCQGY 200


>gi|39946040|ref|XP_362557.1| hypothetical protein MGG_08140 [Magnaporthe oryzae 70-15]
 gi|73621941|sp|Q52C47|SPB1_MAGO7 RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|145019391|gb|EDK03619.1| hypothetical protein MGG_08140 [Magnaporthe oryzae 70-15]
          Length = 884

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA +      +
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A E L  GG F+ K F+    N +L +  + F+KV   KP +SR 
Sbjct: 129 DSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|50285125|ref|XP_444991.1| hypothetical protein [Candida glabrata CBS 138]
 gi|73621936|sp|Q6FX63|SPB1_CANGA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49524294|emb|CAG57891.1| unnamed protein product [Candida glabrata]
          Length = 837

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASKLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G    
Sbjct: 72  -SLIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKADTVLHDGA-PNVGLGWA 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L + G F+ K F+    N ++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|302908896|ref|XP_003049953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730890|gb|EEU44240.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 833

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA +      N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMPP---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G     
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTEKCRATIRQHFKTWKADTVLHDGA-PNVGTAWAQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A E L  GG F+ K F+    N +L +L + F KV   KP +SR 
Sbjct: 129 DSFNQAELALQAMKLATEFLIEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|118404228|ref|NP_001072428.1| FtsJ homolog 3 [Xenopus (Silurana) tropicalis]
 gi|113197746|gb|AAI21673.1| FtsJ homolog 3 [Xenopus (Silurana) tropicalis]
          Length = 298

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N K Q L   R +VDL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRKFQFLPKARALVDLCAAPGGWLQVAAKFM---PIS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G     
Sbjct: 70  SLIIGVDLVPIKPIPKVLTLQEDITTEACRQTVRKHLQTWKADVVLNDGA-PNVGANWTH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D    + L   A   A + L+ GG F+ K F+      +L +L++ F+KV   KP ASR+
Sbjct: 129 DAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWILQQFFKKVNSTKPQASRS 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|126138018|ref|XP_001385532.1| AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA
           methyltransferase) (S-adenosyl-L-methionine-dependent
           methyltransferase) [Scheffersomyces stipitis CBS 6054]
 gi|126092810|gb|ABN67503.1| AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA
           methyltransferase) (S-adenosyl-L-methionine-dependent
           methyltransferase) [Scheffersomyces stipitis CBS 6054]
          Length = 831

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNCITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F KV   KP ASR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLAAGGTFVTKIFRSRDYNNLMWVFQQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 TVSAEIFVVCKGFK 203


>gi|220916277|ref|YP_002491581.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954131|gb|ACL64515.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 298

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 11/197 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ +G RARSA+K+ +I  +H++L     ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILADAVGEKG- 66

Query: 95  NTRVVAIDILDMEPI--LGVKFFKFDFLDL---DSWEFIRQAIGGNPDLVLSDMAYPTIG 149
               VA+ + D+EPI  LG ++ +   +DL   D+ + IR    G   LV SDMA  TIG
Sbjct: 67  ----VAVGV-DLEPIRNLGKRWVRTAVVDLLAPDALDKIRLLHEGRFRLVTSDMAPKTIG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A ++L  GG F+ K F GG    +   L+  F  +  ++P 
Sbjct: 122 IKVTDEARSLELVRMALSVAEQVLVPGGAFVAKVFMGGDFPALKRELQGRFAAMHVIRPE 181

Query: 210 ASRAESVEMFLLAKGFR 226
           A R  S E+++L  GFR
Sbjct: 182 AVRESSYEVYVLGTGFR 198


>gi|6319535|ref|NP_009617.1| Trm7p [Saccharomyces cerevisiae S288c]
 gi|586500|sp|P38238|TRM7_YEAST RecName: Full=tRNA (uridine-2'-O-)-methyltransferase TRM7
 gi|536303|emb|CAA85004.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|151946453|gb|EDN64675.1| 2'-O-ribose tRNA anticodon loop methyltransferase [Saccharomyces
           cerevisiae YJM789]
 gi|190408775|gb|EDV12040.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Saccharomyces
           cerevisiae RM11-1a]
 gi|207347732|gb|EDZ73814.1| YBR061Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271915|gb|EEU06940.1| Trm7p [Saccharomyces cerevisiae JAY291]
 gi|285810396|tpg|DAA07181.1| TPA: Trm7p [Saccharomyces cerevisiae S288c]
 gi|290878080|emb|CBK39139.1| Trm7p [Saccharomyces cerevisiae EC1118]
 gi|323310224|gb|EGA63416.1| Trm7p [Saccharomyces cerevisiae FostersO]
 gi|323334541|gb|EGA75915.1| Trm7p [Saccharomyces cerevisiae AWRI796]
 gi|323338635|gb|EGA79851.1| Trm7p [Saccharomyces cerevisiae Vin13]
 gi|323349695|gb|EGA83910.1| Trm7p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323356040|gb|EGA87845.1| Trm7p [Saccharomyces cerevisiae VL3]
          Length = 310

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQVAAR-----I 88
           D Y ++A+ +G+RARSA+KLLQ+N++   L     +R+VDL ++PGSWSQV +R      
Sbjct: 10  DLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQVLSRKLFDES 69

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
             S+  + ++V++D+  M PI  V   + D     +   I +  G    D V SD A   
Sbjct: 70  PSSDKEDRKIVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNEKADFVCSDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A      +L  GG F+ K F+G   + +   L   F K++  K
Sbjct: 130 TGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGYLFDKIVCAK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  G+
Sbjct: 190 PRSSRGTSLEAFIVCLGY 207


>gi|10954014|gb|AAG25705.1| SPB1-like protein [Saccharomyces servazzii]
          Length = 842

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y+  A+ +G+RARS++K++QINEK    L+ ++ +VDL ++PGSW QVA ++   N  
Sbjct: 14  DRYLYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVVDLCAAPGSWCQVATKLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L + G F+ K F+    N ++ + ++ F KV   KP +SR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFDKVEATKPPSSR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|302659743|ref|XP_003021559.1| hypothetical protein TRV_04406 [Trichophyton verrucosum HKI 0517]
 gi|291185462|gb|EFE40941.1| hypothetical protein TRV_04406 [Trichophyton verrucosum HKI 0517]
          Length = 309

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 34/225 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+ ++E+     H    S RR+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  ----------------TGSNANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE 126
                           TG  A   R      +V++D+  M P+ G+   + D     +  
Sbjct: 70  RGESFGRRQYELDRGGTGGVAEEVRPRRDVKIVSVDLQPMAPLEGITTLQADITHPSTVP 129

Query: 127 FIRQAIGGNP-----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +  A+         DLVLSD A    G   +D      L  AA   A+ ++  GG F+ 
Sbjct: 130 LLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGIIRPGGTFVA 189

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 190 KIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 234


>gi|323447697|gb|EGB03609.1| hypothetical protein AURANDRAFT_33790 [Aureococcus anophagefferens]
          Length = 311

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVA 85
           +R   D Y + A+   +RAR+A+KLLQ++    IL +       R+ DL ++PG WSQV 
Sbjct: 5   SRDKRDIYYRLAKTSNYRARAAFKLLQLDATLGILSTATTHDRLRVADLCAAPGGWSQVV 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLS 141
           A          RVVA+D+  M PI GV+    D     +   +  A+GG  D    +VL 
Sbjct: 65  A----ERRPGARVVAVDLKPMAPIAGVEMVLGDITAAATAREVVDALGGGADARRGVVLC 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A   IG   +D      L  AA+    E   +GG F+ K ++G     +L  L+KHF+
Sbjct: 121 DGAPDVIGLNDVDEHLQNELARAASG-RREPPFLGGCFVSKVYRGRDATALLESLRKHFR 179

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP  SR+ S E F++ +GF
Sbjct: 180 SVFVAKPRCSRSASPEAFVVCRGF 203


>gi|312216350|emb|CBX96301.1| similar to tRNA (uridine-2'-O-)-methyltransferase TRM7
           [Leptosphaeria maculans]
          Length = 388

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 113/253 (44%), Gaps = 58/253 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSAYKLLQ++E+  + +   R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEEGWRARSAYKLLQLDEEFNLFEGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 89  ----------------------------TGSNANN----------------TRVVAIDIL 104
                                       T + A                   R+VAID+ 
Sbjct: 65  KGEKFGRAGWQEKQAAARNYVLGLDNTKTPAPAEEEKKDIQPAERPRPREGVRIVAIDLQ 124

Query: 105 DMEPILGVKFFKFDF------------LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            M P+ GV   + D             LD D+++          DLV+SD A    G   
Sbjct: 125 PMSPLEGVTTMRADITHPSTIPLMLKALDPDTYDPTTPQTSSPVDLVISDGAPDVTGLHD 184

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F +V   KP +SR
Sbjct: 185 LDIYVQSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKTVFDRVRVAKPRSSR 244

Query: 213 AESVEMFLLAKGF 225
           A S+E F++ +GF
Sbjct: 245 ASSIEAFVVCEGF 257


>gi|51246761|ref|YP_066645.1| ribosomal RNA methyltransferase (FtsJ) [Desulfotalea psychrophila
           LSv54]
 gi|81641141|sp|Q6AJ42|RLME_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|50877798|emb|CAG37638.1| related to ribosomal RNA methyltransferase (FtsJ) [Desulfotalea
           psychrophila LSv54]
          Length = 201

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 108/204 (52%), Gaps = 15/204 (7%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R IND Y ++A+ + + ARS YKL +  +K+ I+     I+DLG  PGSWS  A+ + G 
Sbjct: 2   RKINDYYAKKAKKDNYPARSIYKLEEAQKKYDIISRGDSILDLGCFPGSWSIYASELAGP 61

Query: 92  NANNTRVVAIDI--------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
                 VV +D+         D  PI    +   D  +    E +R+ I  +  +++SDM
Sbjct: 62  KGI---VVGVDLQQAVGGGRADAAPI---HWICEDIREPAMLEAVRR-IRPSFRVLISDM 114

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A  T G+R  D  ++++LC      A ++L   G+++ K FQGG   D +  +KK F+  
Sbjct: 115 APKTTGNRWTDAQQSLNLCYQTLEIAEQVLLNKGNYICKVFQGGDFPDFVDAVKKRFESA 174

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
             +KP +SR ES E+F+L   +RK
Sbjct: 175 RVIKPQSSRIESREVFVLGLNYRK 198


>gi|317142766|ref|XP_001819081.2| transfer RNA methyltransferase [Aspergillus oryzae RIB40]
          Length = 393

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 30/220 (13%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARITG 90
           D Y + A+ + WRARSA+KL+QI+E+     H+  +   R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 91  SNA--------NNTRVVAIDILDMEPILGVKFFKFDF------------LDLDSWEFIRQ 130
            +A         N ++V+ID+  M P+ G+   K D             LD ++++    
Sbjct: 70  KDAAMEELKPRKNVKIVSIDLQPMAPLEGITTLKADITHPSTIPLLLRALDPEAYDSTTS 129

Query: 131 AIGG----NP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +       +P DLV+SD A    G   +D      L  AA   AL +L  GG F+ K F+
Sbjct: 130 SPSSLRQPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLALGVLRPGGKFVAKIFR 189

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G   + I   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 190 GRDVDLIYAQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 229


>gi|198455401|ref|XP_001359976.2| GA20027 [Drosophila pseudoobscura pseudoobscura]
 gi|198133228|gb|EAL29128.2| GA20027 [Drosophila pseudoobscura pseudoobscura]
          Length = 316

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TG 90
           D + + A+ +GWRARSA+KLLQ  E   +L    R VDL ++PGSWSQV ++      + 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQAEETFHLLDGVTRAVDLCAAPGSWSQVLSKHMYEPRSP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M PI GV   + D     + E I +   G    LV+SD A  + G
Sbjct: 70  EEREKVKIIAVDLQGMAPIDGVHQLRADITKESTAEAIIEYFEGQKAQLVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG  + K ++   T+ +   L++ F+ V   KP 
Sbjct: 130 MHDFDVYMQGELLLSALSISTFILETGGSLVAKIYRADNTSRLYLQLQRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVARQF 205


>gi|323306102|gb|EGA59836.1| Trm7p [Saccharomyces cerevisiae FostersB]
          Length = 233

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQVAAR-----I 88
           D Y ++A+ +G+RARSA+KLLQ+N++   L     +R+VDL ++PGSWSQV +R      
Sbjct: 10  DLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQVLSRKLFDES 69

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
             S+  + ++V++D+  M PI  V   + D     +   I +  G    D V SD A   
Sbjct: 70  PSSDKEDRKIVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNEKADFVCSDGAPDV 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A      +L  GG F+ K F+G   + +   L   F K++  K
Sbjct: 130 TGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGYLFDKIVCAK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  G+
Sbjct: 190 PRSSRGTSLEAFIVCLGY 207


>gi|156836549|ref|XP_001642330.1| hypothetical protein Kpol_251p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112834|gb|EDO14472.1| hypothetical protein Kpol_251p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 313

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQVAAR------ 87
           D Y ++A+ +G+RARSA+KLLQ+NE+   L     +R+VDL ++PGSWSQV +R      
Sbjct: 10  DLYYRKAKEQGYRARSAFKLLQLNEQFHFLDDPNLKRVVDLCAAPGSWSQVLSRKLFTED 69

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYP 146
               N  + +++A+D+  M PI  V   + D     +   I +  G    D V SD A  
Sbjct: 70  PDKENTKDKKIIAVDLQPMSPIDNVITLQADITHPKTLAKILELFGNEKADFVCSDGAPD 129

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  +A      +L  GG F+ K F+G   + +   L   F++VI  
Sbjct: 130 VTGLHDLDEYVQQQLIMSALQLTTCILKTGGTFIAKIFRGRDIDLLYSQLGFLFKRVICA 189

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F++   +
Sbjct: 190 KPRSSRGTSLEAFIVCMDY 208


>gi|315187256|gb|EFU21012.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Spirochaeta thermophila
           DSM 6578]
          Length = 194

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 109/196 (55%), Gaps = 11/196 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +D Y ++A+ EG+ ARS YKL++I  K++++    R++DLG++PGSWS+      G    
Sbjct: 5   DDYYTRKARREGYPARSVYKLMEIQRKYRVVSRGDRVLDLGAAPGSWSKYLLSCVGEKGL 64

Query: 95  NTRVVAIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
              VVA+D+L +  ++G    + F++ DF   +  E  R  +     +++SD A  T G+
Sbjct: 65  ---VVAVDLLPL--VIGSHERLVFYQGDFTSDEVQE--RIDVHAPFQVIVSDAAPSTSGN 117

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D  R+ +L E     A   L  GG+ + K FQG    +I   +++ +++    +P A
Sbjct: 118 RGLDTARSEALVERILSLAGRWLVPGGNLVAKLFQGSGAQEIFRAVREGWERAYFFRPQA 177

Query: 211 SRAESVEMFLLAKGFR 226
           +R +S E+F++  G R
Sbjct: 178 TRRQSFEVFVVGVGKR 193


>gi|297569182|ref|YP_003690526.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925097|gb|ADH85907.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 197

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 8/199 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y ++A+ EG+ ARS YKL +  +K ++L+   +++DLG  PGSWS  AAR+ G 
Sbjct: 2   KQVQDFYFRKARKEGYPARSVYKLEEAQQKFKLLRPGDKVLDLGCQPGSWSIYAARVVGR 61

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGG---NPDLVLSDMAYPT 147
                 VV +DI    PI       F F+  D + E +++ + G      +++SDMA  T
Sbjct: 62  QGL---VVGVDI-TAGPIKTRGGAPFHFVLGDITRESVQEKVRGICSRYRVLISDMAPRT 117

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G+R  D  +++ L       A   L  GG    K F+G    +++  +++ F KV   K
Sbjct: 118 TGNRWADQQQSLRLARTVLELAANWLQPGGHLYCKVFEGEDFQELVADVRRSFGKVKVFK 177

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR ES E+FLLA  ++
Sbjct: 178 PKSSRTESREVFLLAMDYK 196


>gi|225678023|gb|EEH16307.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 779

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 120/275 (43%), Gaps = 88/275 (32%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R   D Y + A ++G ++R+A+KLLQIN+KH+I +  + +VDLG +PGSWSQ
Sbjct: 501 SSSKRWQARQAKDRYSREAIVKGLKSRAAFKLLQINDKHKIFKLGQSVVDLGYAPGSWSQ 560

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGV-----------------KFFK---------- 116
           VA  +T  N    RVV +DI+  +P  GV                 +F +          
Sbjct: 561 VAVELTQPNG---RVVGVDIIPAQPPKGVSTIQGNFLSPQVQAYVQEFLRNPNRGRVQRL 617

Query: 117 --FDFLDLDSWEFI--------------RQA------IGGNP-------------DLVLS 141
             F+  D DS                  R A      +GG+              D+VLS
Sbjct: 618 NHFENTDPDSQSITGYQIEESEGYIDRERSASSHITQVGGDAEDVSDTAMGDKTVDVVLS 677

Query: 142 DMAYP---TIG----------HRKI--------DHLRTM--SLCEAATFFALEMLNIGGD 178
           DM+ P   T G          HR +        DH  +M   LC AA  F+  +L  GG 
Sbjct: 678 DMSAPWDQTTGFWKKSLSDPYHRMMNTSGMSFRDHAGSMKQDLCRAALEFSFNVLKTGGH 737

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           F+ K +QG     +   LK+ FQ V   KP +SR+
Sbjct: 738 FVCKFYQGAEDKALERQLKELFQTVHREKPESSRS 772


>gi|198453132|ref|XP_001359081.2| GA18746 [Drosophila pseudoobscura pseudoobscura]
 gi|198132224|gb|EAL28224.2| GA18746 [Drosophila pseudoobscura pseudoobscura]
          Length = 304

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y ++A+ EGWRARSA+KLL I++ + IL   RR VDL ++PGSWSQV +R       N
Sbjct: 10  DIYYRQAKEEGWRARSAFKLLHIHDAYGILNGVRRAVDLCAAPGSWSQVLSRKLYDTCQN 69

Query: 96  ------TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAY 145
                 T+++A+D+  M PI GV   + D     + E I      +      LV+ D A 
Sbjct: 70  DAEKSATKIIAVDLQAMAPIRGVLQLQGDITKESTAEAIISHFSADGQEKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  +A   A  +L  GG F+ K FQG  T  +   +K  F K   
Sbjct: 130 DVTGVHEMDEYMQHQLLVSALSIATVVLETGGSFVAKIFQGNATGLLSTQMKIFFNKFDI 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR+ S+E F++   F
Sbjct: 190 YKPPSSRSSSIESFVVCSDF 209


>gi|254584860|ref|XP_002497998.1| ZYRO0F18304p [Zygosaccharomyces rouxii]
 gi|186928984|emb|CAQ43309.1| AdoMet-dependent rRNA methyltransferase SPB1 [Zygosaccharomyces
           rouxii]
 gi|238940891|emb|CAR29065.1| ZYRO0F18304p [Zygosaccharomyces rouxii]
          Length = 839

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DKYYHLAKEKGYRARSSFKVIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASKLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M P+  V  F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLILGVDIVPMRPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 -DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L   A   A+E L + G F+ K F+    N ++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFSQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ +GF+
Sbjct: 190 NVSAEIFVVCRGFK 203


>gi|145550654|ref|XP_001461005.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428837|emb|CAK93608.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 5/187 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+R+R+A+KL Q+N K+  L + R +VDL ++PG W QV A+I  +++  
Sbjct: 64  DKYYNLAKDQGYRSRAAFKLFQLNRKYNFLNNARTVVDLCAAPGGWMQVCAQIMPTSST- 122

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR-KID 154
             ++ +D++ ++PI G K F  D       + +++ I    D+ L D A P +G     D
Sbjct: 123 --IIGLDLVHIKPIPGCKAFTQDITTPQCVQLLKKEIPQKADVFLHDGA-PNVGASWAKD 179

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  +A   A + L  GG F+ K F+    N ++ +  K F KV   KP+ASR  
Sbjct: 180 AYNQNDLVLSALRLASQFLKKGGVFVTKVFRSTDYNSLMWVFNKFFSKVEATKPLASRFV 239

Query: 215 SVEMFLL 221
           S E+F++
Sbjct: 240 SAEIFVV 246


>gi|261191079|ref|XP_002621948.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239590992|gb|EEQ73573.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           dermatitidis SLH14081]
          Length = 829

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ +R ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSRVVIDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKTWKADTVLHDGA-PNVGVAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNNVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|260941558|ref|XP_002614945.1| hypothetical protein CLUG_04960 [Clavispora lusitaniae ATCC 42720]
 gi|238851368|gb|EEQ40832.1| hypothetical protein CLUG_04960 [Clavispora lusitaniae ATCC 42720]
          Length = 825

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+ +      
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASNLC---PI 70

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
           N+ ++ +DI+ ++P+     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 71  NSLIIGVDIVPIKPLPNCITFQSDITTEDCRSKLRGHLKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A E L  GG F+ K F+    N+++ + ++ F KV   KP ASR
Sbjct: 130 QDAFTQSQLVLKALKLACENLTQGGTFVTKVFRSKDYNNLMWVFQQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|169618599|ref|XP_001802713.1| hypothetical protein SNOG_12491 [Phaeosphaeria nodorum SN15]
 gi|160703646|gb|EAT80304.2| hypothetical protein SNOG_12491 [Phaeosphaeria nodorum SN15]
          Length = 377

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 110/248 (44%), Gaps = 53/248 (21%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSAYKLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEEGWRARSAYKLLQLDEEFNLFDGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 89  ---------------------------------------TGSNANNTRVVAIDILDMEPI 109
                                                          R+VAID+  M P+
Sbjct: 65  KGEKFGRAGWQEKQAATRNYVLGVKPIEKSLEKLEIKEEAPKPREGVRIVAIDLQPMSPL 124

Query: 110 LGVKFFKFDF------------LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
            GV   + D             LD D+++          DLV+SD A    G   +D   
Sbjct: 125 EGVTTLRADITHPSTIPLMLKALDPDTYDPSATTASSPVDLVISDGAPDVTGLHDLDIYV 184

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA   AL +L  GG F+ K F+G   + +   LK  F++V   KP +SRA S+E
Sbjct: 185 QSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKIVFERVRVAKPRSSRASSIE 244

Query: 218 MFLLAKGF 225
            F++ +GF
Sbjct: 245 AFVVCEGF 252


>gi|326475211|gb|EGD99220.1| tRNA methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 309

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 34/225 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+ ++E+     H    S RR+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  ----------------TGSNANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE 126
                            G+ A   R      +V++D+  M P+ G+   + D     +  
Sbjct: 70  RGESFGRRQYELDRGGAGNVAEEVRPRRDVKIVSVDLQPMAPLEGITTLQADITHPSTVP 129

Query: 127 FIRQAIGGNP-----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +  A+         DLVLSD A    G   +D      L  AA   A+ +L  GG F+ 
Sbjct: 130 LLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILRPGGTFVA 189

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 190 KIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 234


>gi|294657864|ref|XP_460162.2| DEHA2E19690p [Debaryomyces hansenii CBS767]
 gi|218511801|sp|Q6BNQ8|SPB1_DEBHA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|199433005|emb|CAG88435.2| DEHA2E19690p [Debaryomyces hansenii]
          Length = 831

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++ +     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E LN GG F+ K F+    N+++ + ++ F+KV   KP ASR
Sbjct: 130 QDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KG++
Sbjct: 190 NVSAEIFVVCKGYK 203


>gi|6759446|emb|CAB69851.1| cell division-like protein [Arabidopsis thaliana]
          Length = 287

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 88  ------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYC 178


>gi|154283311|ref|XP_001542451.1| hypothetical protein HCAG_02622 [Ajellomyces capsulatus NAm1]
 gi|150410631|gb|EDN06019.1| hypothetical protein HCAG_02622 [Ajellomyces capsulatus NAm1]
          Length = 620

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVIDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADTVLHDGA-PNVGVAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNTVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|195146443|ref|XP_002014194.1| GL24549 [Drosophila persimilis]
 gi|194103137|gb|EDW25180.1| GL24549 [Drosophila persimilis]
          Length = 304

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 10/200 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y ++A+ EGWRARSA+KLL I++ + IL   RR VDL ++PGSWSQV +R       N
Sbjct: 10  DIYYRQAKEEGWRARSAFKLLHIHDAYGILNGVRRAVDLCAAPGSWSQVLSRKLYDTCQN 69

Query: 96  ------TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAY 145
                 T+++A+D+  M PI GV   + D     + E I      + +    LV+ D A 
Sbjct: 70  DAEKSATKIIAVDLQAMAPIRGVLQLQGDITKESTAEAIISHFSADGEEKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  +A   A  +L  GG F+ K FQG  T  +   +K  F K   
Sbjct: 130 DVTGVHEMDEYMQHQLLVSALSIATVVLESGGSFVAKIFQGNATGLLSTQMKIFFNKFDI 189

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR+ S+E F++   F
Sbjct: 190 YKPPSSRSSSIESFVVCSDF 209


>gi|292625927|ref|XP_002666179.1| PREDICTED: putative rRNA methyltransferase 3 isoform 1 [Danio
           rerio]
          Length = 838

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RS++KL+Q+N K Q LQ  R +VDL ++PG W QVA++       +
Sbjct: 13  DKFYHLAKETGYRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQVASKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + V+ +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGA-PNVGANWQH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     +L   A   A E L  GG F+ K F+      ++ + ++ F+KV   KP ASR 
Sbjct: 129 DAFSQANLTLMALKLACEFLAKGGTFITKVFRSKDYQPLMWIFQQFFKKVQATKPQASRN 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|255715916|ref|XP_002554239.1| KLTH0F00704p [Lachancea thermotolerans]
 gi|238935622|emb|CAR23802.1| KLTH0F00704p [Lachancea thermotolerans]
          Length = 830

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK    ++ ++ ++DL ++PGSW QVA+ +   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKFGHFMEKSKVVIDLCAAPGSWCQVASNLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+P+  V  F+ D    D    +R  +     D VL D A P +G    
Sbjct: 72  -SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLGWA 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N ++ +  + F KV   KP ASR
Sbjct: 130 QDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFSQLFDKVEATKPPASR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|197121510|ref|YP_002133461.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp. K]
 gi|196171359|gb|ACG72332.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp. K]
          Length = 318

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 11/194 (5%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           Y ++A+ +G RARSA+K+ +I  +H++L     ++DLG++PG + Q+ A   G       
Sbjct: 11  YYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILADAVGEKG---- 66

Query: 98  VVAIDILDMEPI--LGVKFFKFDFLDL---DSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            VA+ + D+EPI  LG ++ +   +DL   D+ + IR    G   LV SDMA  TIG + 
Sbjct: 67  -VAVGV-DLEPIRNLGKRWVRTAVVDLLAPDALDKIRLLHEGRFRLVTSDMAPKTIGIKV 124

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R++ L   A   A ++L  GG F+ K F GG    +   L+  F  +  ++P A R
Sbjct: 125 TDEARSLELVRMALSVAEQVLVPGGAFVAKVFMGGDFPALKRELQGRFAAMHVIRPEAVR 184

Query: 213 AESVEMFLLAKGFR 226
             S E+++L  GFR
Sbjct: 185 ESSYEVYVLGTGFR 198


>gi|323445643|gb|EGB02153.1| hypothetical protein AURANDRAFT_8728 [Aureococcus anophagefferens]
          Length = 203

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVA 85
           +R   D Y + A+   +RAR+A+KLLQ++    IL +       R+ DL ++PG WSQV 
Sbjct: 5   SRDKRDIYYRLAKTSNYRARAAFKLLQLDATLGILSTATTHDRLRVADLCAAPGGWSQVV 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLS 141
           A          RVVA+D+  + PI GV+    D     +   +  A+GG  D    +VL 
Sbjct: 65  A----ERRPGARVVAVDLKPIAPIAGVEMVLGDITAAATAREVVDALGGGADARRGVVLC 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A   IG   +D      L  AA+    E   +GG F+ K ++G     +L  L+KHF+
Sbjct: 121 DGAPDVIGLNDVDEHLQNELARAASG-RREPPFLGGCFVSKVYRGRDATALLESLRKHFR 179

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP  SR+ S E F++ +GF
Sbjct: 180 SVFVAKPRCSRSASPEAFVVCRGF 203


>gi|308801797|ref|XP_003078212.1| elongation factor P (ISS) [Ostreococcus tauri]
 gi|116056663|emb|CAL52952.1| elongation factor P (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 12/206 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA-ARIT 89
           ++ + DP  + A+  G+ ARSA KL+Q++EK ++L++ R ++DLG +PG+W QV   R  
Sbjct: 265 SKRLIDPIAREAKRLGYVARSALKLVQLDEKFRLLRNKRSVLDLGCAPGAWIQVVHERTR 324

Query: 90  GSNANNTRVVAIDI--LDMEPILGVKFF---KFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
                  RV+ ID+  +D   + G++     +   + LD+ E     +G    D VLSDM
Sbjct: 325 RQGGTCARVLGIDLKEIDRGTLAGLRHVDAARASTMTLDATEARASDLGVETFDAVLSDM 384

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFAL----EMLNIGGDFLVKTFQG-GTTNDILCLLKK 198
              T G   +D   ++ L E A   A+     +L   GD +VK  +G G+  ++    K 
Sbjct: 385 MVNTRGLASVDAAASLELAECAVDLAVVRDGGVLAARGDLVVKILEGSGSVEELAKHCKP 444

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKG 224
           HF KV   KP A+R+ES E++L+A+G
Sbjct: 445 HFDKVNWFKPNATRSESREIYLVARG 470


>gi|320586619|gb|EFW99289.1| cell division protein [Grosmannia clavigera kw1407]
          Length = 341

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 114/266 (42%), Gaps = 71/266 (26%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W +R   D Y + A++ G + R+A+KLL+++ K+++ +  + +VDLG +PGSWSQV
Sbjct: 66  SSSRWTSRQEKDIYAREAKVRGLKGRAAFKLLEMDSKYRLFRPGQMVVDLGYAPGSWSQV 125

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----------- 133
           A   T       RV+ ID++  +P  GV   + +FL       +++ +            
Sbjct: 126 ALERTKPTG---RVLGIDLIPAQPPRGVSTIQGNFLAPSVRALVKEYLATSKKRPIARNR 182

Query: 134 ---GNP------------DLVLSDMAYPTIGH-------------------------RKI 153
               +P            D+VL   +Y  IG                          R +
Sbjct: 183 ESKSDPDARAPDDFEEATDIVLDRPSYLQIGQEEALTSALPLTGEDVAPVQDSIDSSRTV 242

Query: 154 D-----------------HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D                 H  +M LC AA  FA + L  GG F+ K +QGG    +   L
Sbjct: 243 DVVLSDMMMNTSGTPFRDHAGSMDLCAAALEFASDTLRPGGHFVCKFYQGGEDKALETRL 302

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLA 222
            K F KV   KP +SR+ES E F +A
Sbjct: 303 LKMFAKVHREKPNSSRSESKESFFVA 328


>gi|13541120|ref|NP_110808.1| methyltransferase involved in cell division [Thermoplasma volcanium
           GSS1]
 gi|74576058|sp|Q97C13|RLME_THEVO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|14324507|dbj|BAB59434.1| cell division protein [FtsJ] [Thermoplasma volcanium GSS1]
          Length = 197

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 107/197 (54%), Gaps = 14/197 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y  +A+ E  R+R+A+KL  + +++++++    ++++GSSPG W+QV       N+  
Sbjct: 7   DEYYWKAKKEQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVL------NSLA 60

Query: 96  TRVVAIDILDMEPILGVKFFKFD------FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
            ++++ID+ +ME I GV+F + D      F D+D    +R+      D V+SD      G
Sbjct: 61  RKIISIDLQEMEEIAGVRFIRCDIFKETIFDDID--RALREEGIEKVDDVVSDAMAKVSG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               DH  +  + +     A+  L  GG+ L+K FQG  TND + + +K+F      KP 
Sbjct: 119 IPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPP 178

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR  S E++++  GF+
Sbjct: 179 ASRGSSSEIYIMFFGFK 195


>gi|195113347|ref|XP_002001229.1| GI10674 [Drosophila mojavensis]
 gi|193917823|gb|EDW16690.1| GI10674 [Drosophila mojavensis]
          Length = 305

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 10/201 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR------IT 89
           D Y ++A+ EGWRARSA+KL+ IN++  +L + +R VDL ++PGSWSQV +R      +T
Sbjct: 10  DVYYRQAKEEGWRARSAFKLMHINDQFGVLDNVQRAVDLCAAPGSWSQVLSRKLYDCCLT 69

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAY 145
               +  ++VA+D+  M PI GV   + D     + + I        D    LV+ D A 
Sbjct: 70  DDQKSEVKIVAVDLQAMAPIRGVVQLQGDITKQSTAKAIISHFNYGDDKKAQLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  +A   A  +L  GG F+ K F+G     +   L   F     
Sbjct: 130 DVTGVHEMDEYMQSQLIISALSIATFVLESGGKFVAKIFKGNANCMLESRLLSFFNNFQI 189

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E F++   FR
Sbjct: 190 YKPPSSRPSSNEAFVVCCDFR 210


>gi|149236601|ref|XP_001524178.1| AdoMet-dependent rRNA methyltransferase SPB1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452554|gb|EDK46810.1| AdoMet-dependent rRNA methyltransferase SPB1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 799

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 110/194 (56%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASQLCPIN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ ++P+     F+ D    D    +R  +     D VL D A P +G   +
Sbjct: 72  -SLIIGVDIVPIKPLPNCITFQSDITTEDCRSKLRGHMKTWKADTVLHDGA-PNVGLGWV 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV   KP +SR
Sbjct: 130 QDAFTQSQLTLQALKLAVENLTAGGTFVTKVFRSRDYNNLMWVFQQLFEKVEATKPPSSR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ KGF+
Sbjct: 190 NVSAEIFVVCKGFK 203


>gi|67473519|ref|XP_652522.1| ribosomal RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
 gi|56469380|gb|EAL47134.1| ribosomal RNA methyltransferase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 231

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 4/193 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+ EG+RARSA+KL+ +     I      +VDL ++PGSWSQV ++      N 
Sbjct: 6   DKFHRQAKQEGYRARSAFKLIDVERDFHIFDGVHNVVDLCAAPGSWSQVLSKTIKEPKN- 64

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             +V++D+ D+ PI GV   K D     +  E +     G  DL++ D A    G   ID
Sbjct: 65  --IVSVDLQDIAPIEGVTLVKGDITKGSTAKEVMSHFTDGKADLIICDGAPDVTGIHDID 122

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L +AA      +L  GG F+ K F       +    K  F+ V   KP +SR+ 
Sbjct: 123 EANQWILMQAAFSIMAVVLKQGGSFVAKIFVENEYPHLYFQFKSVFESVTIYKPESSRSS 182

Query: 215 SVEMFLLAKGFRK 227
           S E F++ KGF +
Sbjct: 183 SYEHFVVCKGFNE 195


>gi|118575756|ref|YP_875499.1| 23S rRNA methylase [Cenarchaeum symbiosum A]
 gi|158512513|sp|A0RV28|RLME_CENSY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|118194277|gb|ABK77195.1| 23S rRNA methylase [Cenarchaeum symbiosum A]
          Length = 196

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+R+R+AYKL ++N+ ++I+ +   ++DLG +PGSW QVAA   G   N 
Sbjct: 9   DHYRKMAREQGYRSRAAYKLKELNKAYRIIGAGFTVLDLGCAPGSWMQVAASAAG---NR 65

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             V+ +D+   E +   +  + D  D    E + + + G  D V+ D++    G+  +DH
Sbjct: 66  GTVLGVDLEYAEELNHAESMRGDVEDESLAETVAERL-GRADAVICDLSPQVSGNWSVDH 124

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R +SL  AA      +L   G+ + K F G    +    +   F K    KP ASR +S
Sbjct: 125 ARQISLNYAAARIMGRVLAPKGNAVFKVFDGEYAAEFREHMGHMFSKTKSTKPQASRKQS 184

Query: 216 VEMFLLAKGFR 226
            E++L+  GFR
Sbjct: 185 SELYLVCLGFR 195


>gi|307111554|gb|EFN59788.1| hypothetical protein CHLNCDRAFT_18395 [Chlorella variabilis]
          Length = 205

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 19/203 (9%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D + ++A+  G+ ARSAYKLL+I +KH+++    +I+DLG  PG+W QVA    G  + 
Sbjct: 1   EDTFFKKAKASGYVARSAYKLLEIQQKHKLIPQGGQILDLGCHPGAWLQVACESLGPPSR 60

Query: 95  NTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
             R++ ID+    P      V   + D   L   EF ++      D VLSDM + T+G+ 
Sbjct: 61  GGRILGIDM--QRPAKCDERVTIVQADATLLPP-EFWQEQAPDGYDAVLSDMCHFTLGNS 117

Query: 152 KIDHLRTMSLCEAATFFAL-------------EMLNIGGDFLVKTFQGGTTNDILCLLKK 198
             D  +++ L   A   A               +L  GG  L+K  QG  T +    L++
Sbjct: 118 MADAYKSLELARTAWAIATGGEAAYPNATLSRGVLRPGGTLLMKLLQGPGTQEFAAELRR 177

Query: 199 HFQKVIHVKPVASRAESVEMFLL 221
            F KV   +P A+R+ES E+FLL
Sbjct: 178 DFAKVAWHRPKATRSESKEVFLL 200


>gi|320162925|gb|EFW39824.1| cell division protein [Capsaspora owczarzaki ATCC 30864]
          Length = 327

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 16/206 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y + A+ EGWRARSA+KLLQ++E+ Q+  + RR VDL ++PGSWSQV ++        
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDEEFQLFLNVRRAVDLCAAPGSWSQVLSKKLDAVQCP 69

Query: 88  -------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
                  +        ++VA+D+  M P+ GV   + D     + + I     G   DLV
Sbjct: 70  VAVPMESLPAHCQIPRKIVAVDLQAMAPLPGVIQIQGDITKESTAQQIVAHFEGELADLV 129

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D A    G   ID      L  AA      +L   G F+ K F+G   + +   LK  
Sbjct: 130 VCDGAPDVTGLHDIDEYIQAQLILAALNITTHVLRPDGVFVAKIFRGKDVSLLYSQLKLF 189

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+ V   KP +SR  S+E F++ +G+
Sbjct: 190 FRNVTCSKPRSSRNSSIEAFVVCRGY 215


>gi|320352800|ref|YP_004194139.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121302|gb|ADW16848.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
          Length = 200

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y ++A+ + + ARS YKL +   K++ L+  +R++DLG  PGSWS   A I G 
Sbjct: 2   RKEQDYYFKKAKKDNYPARSVYKLEEAQLKYKFLKGGQRVLDLGCHPGSWSLYTAGIVGE 61

Query: 92  NANNTRVVAID-----ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                 VVA D     IL  +P   + +  +D    +  ++++Q   G   +VLSDMA  
Sbjct: 62  KGT---VVAADLQRTEILTQKPHAEIHWLCYDVFSEEFVDYLKQHWPGF-HVVLSDMAPR 117

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G +  DH +++ L       ++  L+  G    K FQG      L   K  F  V  +
Sbjct: 118 TTGSQYADHQQSLLLARRVLELSVLFLHENGTLYCKVFQGEDFPAFLQECKPLFATVKVM 177

Query: 207 KPVASRAESVEMFLLAKGFRK 227
           KP +SR ES E+F+L +GFR+
Sbjct: 178 KPKSSRLESREVFVLGRGFRR 198


>gi|195157878|ref|XP_002019821.1| GL12002 [Drosophila persimilis]
 gi|194116412|gb|EDW38455.1| GL12002 [Drosophila persimilis]
          Length = 316

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TG 90
           D + + A+ +GWRARSA+KLLQ  E   +L    R VDL ++PGSWSQV ++      + 
Sbjct: 10  DIFYRLAKEQGWRARSAFKLLQAEETFHLLDGVTRAVDLCAAPGSWSQVLSKHMYEPRSP 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
                 +++A+D+  M PI GV   + D     + + I +   G    LV+SD A  + G
Sbjct: 70  EEREKVKIIAVDLQGMAPIDGVHQLRADITKESTAQAIIEYFEGQKAQLVVSDGAPDSTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L  +A   +  +L  GG  + K ++   T+ +   L++ F+ V   KP 
Sbjct: 130 MHDFDVYMQGELLLSALSISTFILETGGSLVAKIYRADNTSRLYLQLQRFFKDVCVFKPS 189

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S+E F++A+ F
Sbjct: 190 ASRNSSIEAFVVARQF 205


>gi|239613095|gb|EEQ90082.1| AdoMet-dependent rRNA methyltransferase spb1 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVIDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKTWKADTVLHDGA-PNVGVAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNNVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|301060192|ref|ZP_07201059.1| ribosomal RNA large subunit methyltransferase J [delta
           proteobacterium NaphS2]
 gi|300445704|gb|EFK09602.1| ribosomal RNA large subunit methyltransferase J [delta
           proteobacterium NaphS2]
          Length = 197

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +D Y ++A+ E W ARS YKL +I+ K ++++ N  ++DLG  PGSWSQ      G   N
Sbjct: 7   DDHYTEKARKEKWLARSVYKLQEIDRKFKLIRRNDTVLDLGCFPGSWSQYVIGKVGKGGN 66

Query: 95  NTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              VV ID+   +        + K D   +D  +   +    N  LVLSD+A PT G R 
Sbjct: 67  ---VVGIDLQKPKAFNPPNFTYMKADIETVDPEQLSARIEPRN--LVLSDLAPPTTGIRD 121

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R++ L E A   A  +L   G F+ K F+     D    L   F ++   +P A+R
Sbjct: 122 TDASRSLFLAERAAEIARMLLKPKGHFVCKIFEDEALKDFKKDLGPAFGQIRLFRPKATR 181

Query: 213 AESVEMFLLAKGF 225
             S E++L+A GF
Sbjct: 182 KRSREVYLVATGF 194


>gi|255719518|ref|XP_002556039.1| KLTH0H03630p [Lachancea thermotolerans]
 gi|238942005|emb|CAR30177.1| KLTH0H03630p [Lachancea thermotolerans]
          Length = 310

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 73/264 (27%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQVAA 86
           WL+R   D + + A+++G R+R+A+KL+ +++K+ + +  S+++++DLG +PG+WSQVA 
Sbjct: 35  WLDRQKGDSFTREAKVQGLRSRAAFKLMHLDDKYHLFRKGSSQKVLDLGYAPGAWSQVAL 94

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR----------------- 129
             TG N     ++ +DIL   P  GV   + + L   + E IR                 
Sbjct: 95  DRTGPNG---VILGVDILPCAPPRGVSAIQGNILSKKTHELIRLFFSKHFQLYQEDQLHK 151

Query: 130 ----------QAIGG-------------------NP-DLVLSDMAYP------------- 146
                     Q + G                    P D+++SDM  P             
Sbjct: 152 DNGYFQHMLEQELEGLIPDGSKTGLQIDRSKVEKTPIDVIVSDMYEPWPQTTGFWNNITN 211

Query: 147 --------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
                   T G    DH  +M LC+AA   A++++  GG F+ K + G     +   LKK
Sbjct: 212 SAYDRMANTTGVAIKDHYMSMDLCDAALVTAIDLMKPGGSFVCKLYTGKEDKLLESRLKK 271

Query: 199 HFQKVIHVKPVASRAESVEMFLLA 222
            F+ V   KP ASR ES E++ + 
Sbjct: 272 AFENVHRFKPSASRNESKELYFIG 295


>gi|224035899|gb|ACN37025.1| unknown [Zea mays]
          Length = 202

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 10/169 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+++  I    + +VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKHVVDLCAAPGSWSQVLSRNLYVPAKQ 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           +++ +      +VAID+  M PI GV   + D  +  + +  IR   G   DLV+ D A 
Sbjct: 70  SSDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTADVVIRHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C
Sbjct: 130 DVTGLHDMDEFVQSQLILAALAIVTHVLKVGGKFVAKIFRGKDTSLLYC 178


>gi|237840609|ref|XP_002369602.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
           gondii ME49]
 gi|211967266|gb|EEB02462.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
           gondii ME49]
          Length = 981

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D +   A+ +G+RARSA+KLLQ++++ ++ + S   +VDL ++PG W QVAA+       
Sbjct: 18  DKFYHLAKEQGYRARSAFKLLQLSQRFRLFEKSCASVVDLCAAPGGWLQVAAK---HCPV 74

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-K 152
            T +V +D++ + PI GV+ F  D         +R+ +  G  DLVL D + P +G    
Sbjct: 75  ATTIVGVDLVPISPIRGVQTFTGDITTPQCAAKLRKLVKFGEVDLVLHDGS-PNMGTDWS 133

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L   A   A ++L  G  F+ K F+      +L +L+  F++V   KP ASR
Sbjct: 134 VDAFSQNVLVLCAAKLACQLLAAGATFVSKVFRSADYAALLYVLQTLFERVDATKPQASR 193

Query: 213 AESVEMFLLAKGFRK 227
           A S E+F++ +GFRK
Sbjct: 194 AVSAEIFVVCRGFRK 208


>gi|221503392|gb|EEE29090.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 981

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D +   A+ +G+RARSA+KLLQ++++ ++ + S   +VDL ++PG W QVAA+       
Sbjct: 18  DKFYHLAKEQGYRARSAFKLLQLSQRFRLFEKSCASVVDLCAAPGGWLQVAAK---HCPV 74

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-K 152
            T +V +D++ + PI GV+ F  D         +R+ +  G  DLVL D + P +G    
Sbjct: 75  ATTIVGVDLVPISPIRGVQTFTGDITTPQCAAKLRKLVKFGEVDLVLHDGS-PNMGTDWS 133

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L   A   A ++L  G  F+ K F+      +L +L+  F++V   KP ASR
Sbjct: 134 VDAFSQNVLVLCAAKLACQLLAAGATFVSKVFRSADYAALLYVLQTLFERVDATKPQASR 193

Query: 213 AESVEMFLLAKGFRK 227
           A S E+F++ +GFRK
Sbjct: 194 AVSAEIFVVCRGFRK 208


>gi|187918187|ref|YP_001883750.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia hermsii DAH]
 gi|119861035|gb|AAX16830.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia hermsii DAH]
          Length = 205

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 11/198 (5%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           ++ D Y Q+A+ EG+ ARS YKL++I+++  +  S   I+D+G+SPGS+SQ A     + 
Sbjct: 11  NVVDKYSQKAKKEGYLARSVYKLIEIDQRFSLFSSGN-ILDIGASPGSFSQYAY----NK 65

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD---FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             N  +VA+D+ D+       F+      ++D + +E I+        L++SD A+ T G
Sbjct: 66  LKNGVLVAVDLNDINLNFTNNFYFIKGNIYID-EVFEKIKTF--APYSLIISDAAFKTTG 122

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D   + +L       A ++L  GG+ L+K FQGG    +   LK+ F+ V  ++P 
Sbjct: 123 NRLVDTSNSFNLNMRIVELASQILIRGGNLLLKVFQGGEEEQLFYKLKRCFKLVKKIRPK 182

Query: 210 ASRAESVEMFLLAKGFRK 227
           A R  S E++ L+K F K
Sbjct: 183 AVRKNSFEIYFLSKDFIK 200


>gi|327354853|gb|EGE83710.1| hypothetical protein BDDG_06655 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 829

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVIDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKTWKADTVLHDGA-PNVGVAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNNVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|320037455|gb|EFW19392.1| rRNA methyltransferase Spb1 [Coccidioides posadasii str. Silveira]
          Length = 712

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPT---E 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELALQSLKLATEFLVAGGTFVTKVFRSKDYNSLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|145551003|ref|XP_001461179.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429012|emb|CAK93806.1| unnamed protein product [Paramecium tetraurelia]
          Length = 902

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 5/187 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+R+R+A+KL Q+N K+  L + R +VDL ++PG W QV A+I  +   +
Sbjct: 12  DKYYNLAKDQGYRSRAAFKLFQLNRKYNFLNNARTVVDLCAAPGGWMQVCAQIMPT---S 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR-KID 154
           + ++ +D++ ++PI G K F  D       + +++ I    D+ L D A P +G     D
Sbjct: 69  SIIIGLDLVHIKPIPGCKAFTQDITTPQCVQLLKKEIPQKADVFLHDGA-PNVGASWAKD 127

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  +A   A + L  GG F+ K F+    N ++ +  K F KV   KP+ASR  
Sbjct: 128 AYNQNDLVLSALRLASQFLKKGGVFVTKVFRSTDYNSLMWVFNKFFSKVEATKPLASRFV 187

Query: 215 SVEMFLL 221
           S E+F++
Sbjct: 188 SAEIFVV 194


>gi|50304545|ref|XP_452227.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|73621940|sp|Q6CV12|SPB1_KLULA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49641360|emb|CAH01078.1| KLLA0C00737p [Kluyveromyces lactis]
          Length = 833

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA+ +   N  
Sbjct: 15  DKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASNLCPVN-- 72

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
            + ++ +DI+ M+ +  V  F+ D    D    +R  +     D VL D A P +G    
Sbjct: 73  -SLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGA-PNVGLSWA 130

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   A   A+E L +GG F+ K F+    N ++ + ++ F+KV   KP ASR
Sbjct: 131 QDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASR 190

Query: 213 AESVEMFLLAKGFR 226
             S E+F++ K F+
Sbjct: 191 NVSAEIFVVCKNFK 204


>gi|95007320|emb|CAJ20540.1| methyltransferase, putative [Toxoplasma gondii RH]
 gi|221482814|gb|EEE21145.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 981

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D +   A+ +G+RARSA+KLLQ++++ ++ + S   +VDL ++PG W QVAA+       
Sbjct: 18  DKFYHLAKEQGYRARSAFKLLQLSQRFRLFEKSCASVVDLCAAPGGWLQVAAK---HCPV 74

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-K 152
            T +V +D++ + PI GV+ F  D         +R+ +  G  DLVL D + P +G    
Sbjct: 75  ATTIVGVDLVPIAPIRGVQTFTGDITTPQCAAKLRKLVKFGEVDLVLHDGS-PNMGTDWS 133

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L   A   A ++L  G  F+ K F+      +L +L+  F++V   KP ASR
Sbjct: 134 VDAFSQNVLVLCAAKLACQLLAAGATFVSKVFRSADYAALLYVLQTLFERVDATKPQASR 193

Query: 213 AESVEMFLLAKGFRK 227
           A S E+F++ +GFRK
Sbjct: 194 AVSAEIFVVCRGFRK 208


>gi|328848748|gb|EGF97947.1| hypothetical protein MELLADRAFT_84132 [Melampsora larici-populina
           98AG31]
          Length = 294

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 9/200 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQIL----QSNRRIVDLGSSPGSWSQVAARITGS 91
           D + + ++ EG+RARSAYKL+ +++ + +     Q  + +VDL ++PGSWSQV     G 
Sbjct: 10  DIFYRLSKSEGYRARSAYKLIHLDQHYHLFNNPNQPIKTVVDLCAAPGSWSQVLVNKLGH 69

Query: 92  NANN----TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYP 146
           +        ++VA+D+  M P+ GV     D   +++ + I     G   DLV+ D A  
Sbjct: 70  HPELHDELPKIVAVDLQPMAPLSGVHQLMGDITQIETAQAIMSYFNGQKTDLVVCDGAPD 129

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  AA    L +L  GG F+ K F+G     +L  L   F++V   
Sbjct: 130 VTGLHDLDEFVQAQLLLAALNITLSLLREGGSFVAKIFKGRDVGLLLSQLDCFFEEVSTF 189

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 190 KPKSSRDSSIESFVICRNYK 209


>gi|303314341|ref|XP_003067179.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106847|gb|EER25034.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 816

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPT---E 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELALQSLKLATEFLVAGGTFVTKVFRSKDYNSLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|328856745|gb|EGG05865.1| hypothetical protein MELLADRAFT_48684 [Melampsora larici-populina
           98AG31]
          Length = 884

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+++Q L+S R  +DL ++PG W QVAA+   +   N
Sbjct: 14  DKYYRLAKEQGYRARSAFKLIQLNKRYQFLESARCCIDLCAAPGGWLQVAAKWMPA---N 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D++ ++PI  V     D        ++R  +     D+VL D A P +G   + 
Sbjct: 71  SLILGVDLVPIKPIPKVVTATEDIRTDSCRRWLRSELKDWKADVVLHDGA-PNVGTAWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A EML  GG F+ K F+    N +L +  + F+KV   KP +SR 
Sbjct: 130 DAFSQAELVLHSFKLATEMLAPGGTFVTKVFRSKDYNSLLYVFNQLFKKVESTKPPSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ + F
Sbjct: 190 VSAEIFVVCQDF 201


>gi|257456100|ref|ZP_05621301.1| ribosomal RNA large subunit methyltransferase J [Treponema
           vincentii ATCC 35580]
 gi|257446486|gb|EEV21528.1| ribosomal RNA large subunit methyltransferase J [Treponema
           vincentii ATCC 35580]
          Length = 200

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 8/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  EG+ ARS YKL ++ +K  +      ++DLG++PGSW+    R        
Sbjct: 9   DYWSRKAFSEGYPARSVYKLEEMQKKFNLFGKTDSVLDLGAAPGSWTTFLLRFLSPEG-- 66

Query: 96  TRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            RV A+D+  +   +    + FF+ D    D    ++    G    V+ D A  T G++ 
Sbjct: 67  -RVCAVDLQPLSESIRDPRLSFFQGDLTGADMAAAVKSC--GPYRSVICDAAPATTGNKT 123

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R+ SL E A ++A   L   G+F VK FQGG+    L  ++K F+     KP A R
Sbjct: 124 VDTARSASLVEMALYYAETQLEAHGNFAVKIFQGGSEQQYLQQMRKMFKSARAFKPEACR 183

Query: 213 AESVEMFLLAKGFR 226
           + S E +LL   F+
Sbjct: 184 SSSFETYLLGLDFK 197


>gi|51598573|ref|YP_072761.1| cell division protein [Borrelia garinii PBi]
 gi|81610080|sp|Q661V2|RLME_BORGA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|51573144|gb|AAU07169.1| cell division protein [Borrelia garinii PBi]
          Length = 192

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           H+ D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   HLGDEYSQKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                +V++DI D  +  +    F K D    D+   I +   G   LV+SD+A  T G+
Sbjct: 58  LKRGVLVSVDINDISLRYVNNFYFIKGDIFSDDTASKINKF--GPYSLVISDVAPKTTGN 115

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A
Sbjct: 116 RLVDTSNSFNLNMRIIDLSFEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKA 175

Query: 211 SRAESVEMFLLAKGFRK 227
            R  S E++ L K F K
Sbjct: 176 VRKNSFEIYFLGKSFGK 192


>gi|312385342|gb|EFR29867.1| hypothetical protein AND_00887 [Anopheles darlingi]
          Length = 308

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITG 90
           D Y + A+ EGWRARSA+KL+ ++E + IL    R VDL ++PGSWSQV ++        
Sbjct: 10  DIYYRLAKEEGWRARSAFKLIHLDETYNILDGVTRAVDLCAAPGSWSQVLSKRLYLSREE 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTI 148
            + +  ++VA+D+  M P+ GV   + D     + E I      G    LV+ D A    
Sbjct: 70  KDRDEVKIVAVDLQAMGPLPGVIQLRGDITRFTTAEAIISHFDEGQKAQLVICDGAPDVT 129

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA      +L  GG F+ K F+G  T+ +   L+  F  V   KP
Sbjct: 130 GLHDMDEYLQSQLLLAALGITTFVLVPGGTFVAKIFRGKCTHSLYSQLRIFFDTVDIAKP 189

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F++ +G+
Sbjct: 190 QSSRNSSIEAFVVCQGY 206


>gi|331226587|ref|XP_003325963.1| AdoMet-dependent rRNA methyltransferase SPB1 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309304953|gb|EFP81544.1| AdoMet-dependent rRNA methyltransferase SPB1 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 892

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+++Q L+S R  +DL ++PG W QVAA+   +   N
Sbjct: 14  DKYYRLAKEQGYRARSAFKLIQLNKRYQFLESARCCIDLCAAPGGWLQVAAKWMPA---N 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D++ ++PI  V     D        ++R  +     D+VL D A P +G   + 
Sbjct: 71  SLILGVDLVPIKPIPKVVTATEDIRTQSCRMWLRSELKDWKADVVLHDGA-PNVGTAWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A EML   G F+ K F+    N +L +  + F+KV   KP +SR 
Sbjct: 130 DAFSQSELVLHSLKLATEMLAQNGTFITKVFRSKDYNSLLYIFNQLFKKVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ +G+
Sbjct: 190 VSAEIFVVCQGY 201


>gi|224033613|gb|ACN35882.1| unknown [Zea mays]
          Length = 190

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 10/169 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR---ITGSN 92
           D Y ++A+ EGWRARSA+KLLQI+++  I    + +VDL ++PGSWSQV +R   +    
Sbjct: 10  DIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKHVVDLCAAPGSWSQVLSRNLYVPAKQ 69

Query: 93  ANNTR------VVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAY 145
           +++ +      +VAID+  M PI GV   + D  +  + +  IR   G   DLV+ D A 
Sbjct: 70  SSDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTADVVIRHFDGCKADLVVCDGAP 129

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
              G   +D      L  AA      +L +GG F+ K F+G  T+ + C
Sbjct: 130 DVTGLHDMDEFVQSQLILAALAIVTHVLKVGGKFVAKIFRGKDTSLLYC 178


>gi|118369700|ref|XP_001018053.1| FtsJ-like methyltransferase family protein [Tetrahymena
           thermophila]
 gi|89299820|gb|EAR97808.1| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
           SB210]
          Length = 947

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 103/182 (56%), Gaps = 6/182 (3%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A+  G+R+R+ +KL+QIN+K+  L+    ++DL ++PG W QVAA+           + +
Sbjct: 19  AKEYGYRSRACFKLIQINKKYGFLEKANAVIDLCAAPGGWLQVAAKFCPVTCTK---IGL 75

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHR-KIDHLRTM 159
           D++ ++PI GVK +  D     +++ +++ + GG  D+VL+D A P +G   + D    +
Sbjct: 76  DLVPIKPIPGVKTYVQDITAPVTYQLLKRELKGGKADVVLNDGA-PNVGANWQKDAFNQI 134

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  AA   A+  L  GG F+ K F+    N ++ +  K F+K+   KP ASR  S E+F
Sbjct: 135 ELTLAALKLAVNFLRRGGTFVTKVFRSKDYNALIWVCNKFFRKIEANKPKASRFTSAEIF 194

Query: 220 LL 221
           ++
Sbjct: 195 IV 196


>gi|326933959|ref|XP_003213065.1| PREDICTED: putative rRNA methyltransferase 3-like [Meleagris
           gallopavo]
          Length = 811

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KLLQ+N K Q LQ  R ++DL ++PG W QVA++       +
Sbjct: 13  DKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQVASKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + V+ +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGA-PNVGSSWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     +L   A   A E L  GG F+ K F+      +L + ++ F KV   KP ASR 
Sbjct: 129 DAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQASRN 188

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ +G++
Sbjct: 189 ESAEIFVVCQGYQ 201


>gi|119174478|ref|XP_001239600.1| hypothetical protein CIMG_09221 [Coccidioides immitis RS]
          Length = 816

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPT---E 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELALQSLKLATEFLVAGGTFVTKVFRSKDYNSLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|169868142|ref|XP_001840645.1| ribosomal RNA large subunit methyltransferase J [Coprinopsis
           cinerea okayama7#130]
 gi|116498249|gb|EAU81144.1| ribosomal RNA large subunit methyltransferase J [Coprinopsis
           cinerea okayama7#130]
          Length = 266

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 118/256 (46%), Gaps = 49/256 (19%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLE--GWRARSAYKLLQINEKHQILQSN---RRIVDL 74
           R  + SSR WL R   D YV++ Q++   +RARSA+KLL+IN++     S      +VDL
Sbjct: 9   RLAKKSSRQWLARQTKDSYVKKRQIDPAAFRARSAFKLLEINDQWDNFLSKSDVNAVVDL 68

Query: 75  GSSPGSWSQVAARITGSNANNT-----------------------------RVVAIDILD 105
           G++PG WSQV A+  G  + +T                              ++A+D+L 
Sbjct: 69  GAAPGGWSQVVAQKLGWTSESTDSSPTHDSASTFDPLAIDDDISAPAQGRGTIIAVDLLR 128

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAI------GGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           M PI GV     DFL  D+   I++ +       G  D++LSDMA    G+   D   ++
Sbjct: 129 MRPIHGVHDIVADFLAPDTDRVIQELLKREGVNDGKVDVILSDMAANASGNVTRDIECSL 188

Query: 160 SLCEAATFFALEMLNI--------GGDFLVKTFQGGTTNDIL-CLLKKHFQKVIHVKPVA 210
            +C+A   FA   L          GG  L+K F            L   F  V ++KP +
Sbjct: 189 EICQAVMEFAGRHLRTAEKIGRKRGGVVLMKHFAHPELQQFREEELVPKFNLVKYIKPDS 248

Query: 211 SRAESVEMFLLAKGFR 226
           SRAES E F L  G++
Sbjct: 249 SRAESREGFFLCMGWK 264


>gi|331214017|ref|XP_003319690.1| 23S rRNA methylase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309298680|gb|EFP75271.1| 23S rRNA methylase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 299

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQIL----QSNRRIVDLGSSPGSWSQVAAR---- 87
           D Y +  + EG+RARSAYKL+ ++E + +     Q+  R++DL ++PGSWSQV  +    
Sbjct: 10  DIYYRLGKSEGYRARSAYKLIHLDELYGLFNHPSQAVDRVIDLCAAPGSWSQVLVKKLNE 69

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYP 146
              +     ++VA+D+  M PI GV     D   L++   I     G   DLV+ D A  
Sbjct: 70  TRSAEEEPAKIVAVDLQPMAPIDGVVQIVGDITKLETATSILSHFEGQKADLVVCDGAPD 129

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  AA    L +L  GG F+ K F+G   N I   L   F +V   
Sbjct: 130 VTGLHDLDEFVQSQLLLAALNITLSVLKPGGTFVAKIFRGRDVNMIYDQLLNFFGEVDCA 189

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR+ S+E F++ + +
Sbjct: 190 KPRSSRSSSIEAFVVCRNY 208


>gi|330926680|ref|XP_003301563.1| hypothetical protein PTT_13095 [Pyrenophora teres f. teres 0-1]
 gi|311323564|gb|EFQ90356.1| hypothetical protein PTT_13095 [Pyrenophora teres f. teres 0-1]
          Length = 386

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 110/253 (43%), Gaps = 58/253 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSAYKLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEEGWRARSAYKLLQLDEEFNLFDGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 89  -----------------------------------------TGSNANNTRVVAIDILDME 107
                                                            R+VAID+  M 
Sbjct: 65  KGEIFGRGGWQEKQAAMRNQVLGLDNKGSMTEKREDAEVKEAAKPREGVRIVAIDLQPMS 124

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNP---------------DLVLSDMAYPTIGHRK 152
           P+ GV   + D     +   +  A+  +P               DLV+SD A    G   
Sbjct: 125 PLEGVTTMRADITHPSTIPLLLAALDPSPTSSTPSANTPTTSPVDLVISDGAPDVTGLHD 184

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F++V   KP +SR
Sbjct: 185 LDIYVQSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKIVFERVRVAKPRSSR 244

Query: 213 AESVEMFLLAKGF 225
           A S+E F++ +GF
Sbjct: 245 ASSIEAFVVCEGF 257


>gi|325972772|ref|YP_004248963.1| ribosomal RNA large subunit methyltransferase E [Spirochaeta sp.
           Buddy]
 gi|324028010|gb|ADY14769.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta sp.
           Buddy]
          Length = 208

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 13/193 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--ITGSNA 93
           D Y +RA  EG+ ARS YKL ++ +   +++S   ++D+G++PGSW+       I G   
Sbjct: 10  DSYTKRAHKEGYPARSVYKLEELQQSFNLIKSGDTVLDVGAAPGSWTLYTHNELIKGKGT 69

Query: 94  NNTRVVAIDI--LDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
               ++A+D+  L + P+ + V  +  D       E     I   P D+++SD A  T+G
Sbjct: 70  ----IIAVDLNPLSLNPVPVTVTSYVGDAF---GKEMRNTLISHGPYDVIISDAAPMTMG 122

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D  R+ +L E   + A + L + G+ +VK FQGG   ++L L++  F KV   KP 
Sbjct: 123 NRSVDTSRSENLAEQVIYLAKDHLKVHGNLVVKIFQGGGQVEMLKLMRTLFVKVKPFKPK 182

Query: 210 ASRAESVEMFLLA 222
           A R +S E++L+ 
Sbjct: 183 ACRDDSFEIYLVG 195


>gi|73621842|sp|Q5ZKM1|RRMJ3_CHICK RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
          Length = 832

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KLLQ+N K Q LQ  R ++DL ++PG W QVA++       +
Sbjct: 13  DKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQVASKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + V+ +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     +L   A   A E L  GG F+ K F+      +L + ++ F KV   KP ASR 
Sbjct: 129 DAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQASRN 188

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ +G++
Sbjct: 189 ESAEIFVVCQGYQ 201


>gi|270009490|gb|EFA05938.1| hypothetical protein TcasGA2_TC008754 [Tribolium castaneum]
          Length = 460

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 47/244 (19%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-- 87
            +R   D + ++A+ +GWRARSA+KLLQI+EK  IL+   + VDL ++PGSWSQV +R  
Sbjct: 4   FSRDRRDIFYRKAKEQGWRARSAFKLLQIDEKFNILEGVTKAVDLCAAPGSWSQVLSRRL 63

Query: 88  ------------------------------------------ITGSNANN--TRVVAIDI 103
                                                     +T +   N   ++VA+D+
Sbjct: 64  YLGEKINIKPKCKLFYTENEDYMSEDMVECSTSKIVEPKKEEVTETPQKNKDVKIVAVDL 123

Query: 104 LDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
             M P+ GV   + D  +  + E  I    G + DLV+ D A    G   ID      L 
Sbjct: 124 QPMSPLPGVIQLQGDITEYKTAEAIISHFEGDHADLVVCDGAPDVTGLHCIDIYIQAQLL 183

Query: 163 EAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
             A      +L  GG F+ K F+    + +   L   F+ VI VKP +SR  S+E F++ 
Sbjct: 184 LGALHITCNVLKPGGTFVAKIFRAKDCDLLTQQLLMLFEDVITVKPTSSRNSSIEAFVVC 243

Query: 223 KGFR 226
           + F+
Sbjct: 244 RKFK 247


>gi|50550277|ref|XP_502611.1| YALI0D09251p [Yarrowia lipolytica]
 gi|73621944|sp|Q6C9Q1|SPB1_YARLI RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49648479|emb|CAG80799.1| YALI0D09251p [Yarrowia lipolytica]
          Length = 850

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y + A+ +G+RARS++K++QIN+K+ + L+ ++ ++DL ++PGSW QVA+++   N  
Sbjct: 14  DHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVASQLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-K 152
            + ++  DI+ ++P+  V  F+ D       + +RQ +     D V+ D A P +G    
Sbjct: 72  -SLIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKADTVMHDGA-PNVGMAWA 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L   +   A+E LN GG F+ K F+    N+++ + ++ F+KV   KP +SR
Sbjct: 130 QDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNLMWVFQQFFEKVEATKPPSSR 189

Query: 213 AESVEMFLLAKGFR 226
             S E+F++   F+
Sbjct: 190 NVSAEIFVVCLKFK 203


>gi|169844171|ref|XP_001828807.1| RNA methyltransferase [Coprinopsis cinerea okayama7#130]
 gi|116510178|gb|EAU93073.1| RNA methyltransferase [Coprinopsis cinerea okayama7#130]
          Length = 882

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+K+  L+S R  +DL ++PG W QVA++       N
Sbjct: 14  DKYYKLAKEQGYRARSAFKLIQLNKKYGFLESARCTIDLCAAPGGWLQVASKYMPP---N 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D++ ++PI  V  F  D        ++R  +     D+VL D A P +G   + 
Sbjct: 71  SLIIGVDLVPIKPIPRVITFASDITTTQCRNYLRGEMKDWKADVVLHDGA-PNVGTAWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A+E L  GG F+ K F+    N ++ +  + F KV   KP +SR 
Sbjct: 130 DAYSQSELVLMSLKLAVEFLAKGGTFVTKVFRSVDYNSLIWVFSQLFSKVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ + F
Sbjct: 190 VSAEIFVVCRDF 201


>gi|315040654|ref|XP_003169704.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Arthroderma gypseum
           CBS 118893]
 gi|311345666|gb|EFR04869.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Arthroderma gypseum
           CBS 118893]
          Length = 316

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 41/232 (17%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+ ++E+     H    S RR+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSNPDSVRRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  ------------------TGSNA-----------NNTRVVAIDILDMEPILGVKFFKFDF 119
                              G +A            + ++V++D+  M P+ G+   + D 
Sbjct: 70  RGESFGRRQYELDRGRGGAGESAAGDAGEDVRPRRDVKIVSVDLQPMAPLEGITTLQADI 129

Query: 120 LDLDSWEFIRQAIGGNP-----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
               +   +  A+         DLVLSD A    G   +D      L  AA   A+ +L 
Sbjct: 130 THPSTAPLLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILR 189

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 190 PGGTFVAKIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 241


>gi|302698005|ref|XP_003038681.1| hypothetical protein SCHCODRAFT_64580 [Schizophyllum commune H4-8]
 gi|300112378|gb|EFJ03779.1| hypothetical protein SCHCODRAFT_64580 [Schizophyllum commune H4-8]
          Length = 869

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+K+  L++ R  +DL ++PG W QVA++      NN
Sbjct: 14  DKYYKLAKEQGYRARSAFKLIQLNKKYNFLETARCCIDLCAAPGGWLQVASK---HMPNN 70

Query: 96  TRVVA-IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
           + +VA +D++ ++PI  V  F  D         +R  +     D+VL D A P +G   I
Sbjct: 71  SVIVAGVDLVPIKPIPRVVTFAADITTTHCRNLLRGELKDWKADVVLHDGA-PNVGTAWI 129

Query: 154 DHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
               T S L   +   A+E L  GG F+ K F+    N+++ +  + F KV   KP +SR
Sbjct: 130 QDAYTQSELVLMSLKLAVEFLVKGGTFVTKVFRSTDYNNLIWVFSQLFGKVEATKPPSSR 189

Query: 213 AESVEMFLLAKGF 225
             S E+F++ + F
Sbjct: 190 NVSAEIFVVCRDF 202


>gi|73667119|ref|YP_303135.1| ribosomal RNA methyl transferase RrmJ/FtsJ [Ehrlichia canis str.
           Jake]
 gi|83305659|sp|Q3YRW8|RLME_EHRCJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|72394260|gb|AAZ68537.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ehrlichia canis str. Jake]
          Length = 171

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 4/171 (2%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           ++ K  I +  + ++DLGS PG WSQ AA+   S+ NN  V ++DI +M+ I  V F K 
Sbjct: 1   MDNKFSIFKKGQYVLDLGSFPGGWSQFAAQKV-SHGNNNLVFSVDIQNMDAIPNVIFIKC 59

Query: 118 DFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           D  +    E +         D++LSDMA    G++++DH   ++LCE +    ++     
Sbjct: 60  DISN--EIEILNDKFHNKKFDVILSDMAPKACGNKQVDHANIINLCEMSLDIVIKFAREN 117

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G F+ K  QG    +    +K +F+ V + KP ASR +S E++L+  GF+K
Sbjct: 118 GTFITKILQGEYEKEFYQSMKSNFKLVKYFKPKASRKDSSEIYLVGLGFKK 168


>gi|121713778|ref|XP_001274500.1| rRNA methyltransferase Spb1, putative [Aspergillus clavatus NRRL 1]
 gi|119402653|gb|EAW13074.1| rRNA methyltransferase Spb1, putative [Aspergillus clavatus NRRL 1]
          Length = 796

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPT---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SIIVGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSMKLATEFLAEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|293393160|ref|ZP_06637475.1| ribosomal RNA large subunit methyltransferase J [Serratia odorifera
           DSM 4582]
 gi|291424306|gb|EFE97520.1| ribosomal RNA large subunit methyltransferase J [Serratia odorifera
           DSM 4582]
          Length = 157

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 6/156 (3%)

Query: 71  IVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDLG++PG WSQ V  +I G+     R++A DIL M+PI+GV F + DF D    + + 
Sbjct: 3   VVDLGAAPGGWSQYVVTQIGGTG----RIIACDILPMDPIVGVDFLQGDFRDELVLKALL 58

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             +G +   +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG  
Sbjct: 59  DRVGESKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFLVKVFQGDG 118

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            ++ L  ++  F KV   KP ASRA S E++++A G
Sbjct: 119 FDEYLREIRSLFTKVKIRKPDASRARSREVYIVATG 154


>gi|156402433|ref|XP_001639595.1| predicted protein [Nematostella vectensis]
 gi|156226724|gb|EDO47532.1| predicted protein [Nematostella vectensis]
          Length = 306

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+  G+RARSA+KL+Q+N K   LQ +R ++DL ++PG W QVA++       
Sbjct: 12  KDKFYHLAKETGYRARSAFKLIQLNRKFGFLQKSRCLIDLCAAPGGWLQVASKFM---PM 68

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
           ++ +V +D++ ++PI  V  F  D       + +++ +     D VL+D A P +G   +
Sbjct: 69  SSIIVGVDLVPIKPIKNVITFTEDITTERCKQLLKKELKTWKADCVLNDGA-PNVGTAWV 127

Query: 154 -DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L  +A   A E L  GG F+ K F+      +L + ++ F+ V   KP ASR
Sbjct: 128 QDAFTQAELTLSALKLACENLKEGGWFITKVFRSKDYQPLLWVFQQLFKSVHSTKPQASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 NESAEIFVVCQGY 200


>gi|295670405|ref|XP_002795750.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb01]
 gi|226284835|gb|EEH40401.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 825

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPKVITFQSDITTDKCRATIRQHFKSWKADTVLHDGA-PNVGVAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLTPGGTFVTKVFRSKDYNPLLWVFKQLFATVKATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|310792520|gb|EFQ28047.1| Spb1 domain-containing protein [Glomerella graminicola M1.001]
          Length = 852

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ +VDL ++PGSW QVAA      A  
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVVDLCAAPGSWCQVAAETCPVGA-- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
             +V +D+  ++PI  V  F+ D         IR  +     D VL D A P +G     
Sbjct: 71  -LIVGVDLAPIKPIPKVITFQSDITTDKCRATIRSHLKTWKADCVLHDGA-PNVGTAWNQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSFNQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ KG++
Sbjct: 189 VSAEIFVVCKGYK 201


>gi|209883044|ref|XP_002142954.1| rRNA (uridine-2'-O-)-methyltransferase 3 [Cryptosporidium muris
           RN66]
 gi|209558560|gb|EEA08605.1| rRNA (uridine-2'-O-)-methyltransferase 3, putative [Cryptosporidium
           muris RN66]
          Length = 920

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KL+Q+ +K+ I ++ + +VDL ++PG W QVA R  G ++  
Sbjct: 13  DRYYHLAKEQGYRARSAFKLIQLAQKYDIFKNCQVLVDLCAAPGGWLQVAKRHMGVSS-- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
            +++ +D++ ++ I GV  FK D       + I   + G + D+VL D A P +G     
Sbjct: 71  -KIIGVDLVSIKSIPGVTTFKCDITTEQCKKLILNNLEGLSVDVVLHDGA-PNVGTSWNR 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +T  A ++L  GG F+ K F+    N ++ +L + F+ V   KP +SR 
Sbjct: 129 DAYIQNELVVHSTKLACDILRPGGIFITKIFRSSDYNSLIWVLNQLFKTVRATKPQSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+FL+   ++
Sbjct: 189 VSAEIFLVCLDYK 201


>gi|295674407|ref|XP_002797749.1| ribosomal RNA methyltransferase MRM2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280399|gb|EEH35965.1| ribosomal RNA methyltransferase MRM2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 357

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 127/284 (44%), Gaps = 84/284 (29%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R   D Y + A ++G ++R+A+KLLQIN+KH+I +  + +VDLG +PGSWSQV
Sbjct: 65  SSKRWQARQAKDRYSREAIVKGLKSRAAFKLLQINDKHKIFKVGQSVVDLGYAPGSWSQV 124

Query: 85  A-------ARITG--------------------------------SNANNTRVVAIDIL- 104
           A        R+ G                                 N N  RV  ++   
Sbjct: 125 AVELTQPNGRVVGVDIIPAQPPKGVSTIQGNFLSPQVQAYVQEFLRNPNRGRVQRLNHFE 184

Query: 105 ----DMEPILGVKFFKFD-FLDLD--SWEFIRQAIGGNP-------------DLVLSDMA 144
               D + I G +  + + ++D +  +   I Q +GG+              D+VLSDM+
Sbjct: 185 NTDPDSQSITGYQIEESEGYIDRERSASSHITQ-VGGDAEDVSDTAMGDKTVDVVLSDMS 243

Query: 145 YP---TIG----------HRKI--------DHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            P   T G          HR +        DH  +M LC AA  F+  +L  GG F+ K 
Sbjct: 244 APWDQTTGFWKKSLSDPYHRMMNTSGMSFRDHAGSMDLCRAALEFSFNVLKTGGHFVCKF 303

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +QG     +   LK+ FQ V   KP +SR+ES E + +  G R+
Sbjct: 304 YQGAEDKALERQLKELFQTVHREKPESSRSESKEAYFI--GLRR 345


>gi|156058214|ref|XP_001595030.1| hypothetical protein SS1G_03118 [Sclerotinia sclerotiorum 1980]
 gi|154700906|gb|EDO00645.1| hypothetical protein SS1G_03118 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 347

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +   +
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE---TMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IR        D VL D A P +G   + 
Sbjct: 70  SLIVGVDLSPIKPIPRVITFQSDITTEKCRATIRTHFKSWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSFNQAELALQSLKLATEFLAPGGTFVTKVFRSKDYNSLLWVFNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|225684454|gb|EEH22738.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb03]
          Length = 826

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPKVITFQSDITTDKCRATIRQHFKSWKADTVLHDGA-PNVGVAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLAPGGTFVTKVFRSKDYNPLLWVFKQLFTSVKATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|167388553|ref|XP_001738607.1| ribosomal RNA methyltransferase [Entamoeba dispar SAW760]
 gi|165898080|gb|EDR25052.1| ribosomal RNA methyltransferase, putative [Entamoeba dispar SAW760]
          Length = 829

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+RARSA+KL+Q+N+++  L S   ++DL ++PG W QVA   T      
Sbjct: 13  DKYYHLAKQYGYRARSAFKLVQMNKRYDFLSSAHILIDLCAAPGGWCQVA---TKEMPVE 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS----WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
           +++  +   D+EPIL +        D+ +     E  +   G + D+VL D   P +G  
Sbjct: 70  SKIFGV---DLEPILPIPRCTTYVGDITTGMCFAEMKKLMKGEHADVVLHD-GSPNMGKS 125

Query: 152 KIDHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            I    T S LC AA  FA+  L  GG F+ K F+      IL + +K F+ VI  KP A
Sbjct: 126 WIQDAYTQSELCIAALKFAVTFLKKGGWFISKVFRSQDYYAILFVFEKFFKSVIATKPPA 185

Query: 211 SRAESVEMFLLAKGF 225
           SR  S E++L+ K F
Sbjct: 186 SRNTSAEVYLVCKDF 200


>gi|308812406|ref|XP_003083510.1| Putative SAM-dependent rRNA methyltransferase SPB1 (ISS)
           [Ostreococcus tauri]
 gi|116055391|emb|CAL58059.1| Putative SAM-dependent rRNA methyltransferase SPB1 (ISS)
           [Ostreococcus tauri]
          Length = 948

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 5/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y   A+ +G+R+R+A+KL+Q+N K+  L   R  +DL ++PG W QVA +    
Sbjct: 8   KHRLDKYYYLAKEQGFRSRAAFKLVQLNRKYDFLSKARACMDLCAAPGGWLQVAQKYM-- 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTIG 149
              N+ +V +D+  + PI GV  F  D         +R+A   G   D+V+ D A    G
Sbjct: 66  -PMNSLIVGVDLAPIRPIRGVTTFVEDITTQSCRAALRRATPKGTQYDVVIHDGAPNVGG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +   +     +L   +   A E L  GG F+ K F+    + +L   ++ F+KV   KPV
Sbjct: 125 NFAKESYTQAALTLDSLRLATEFLGQGGWFVTKVFRSVEYHALLYACRQLFKKVESTKPV 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S E++++  G+
Sbjct: 185 ASRGTSAEIYVVCSGY 200


>gi|15639669|ref|NP_219119.1| cell division protein (ftsJ) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025907|ref|YP_001933679.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|9910943|sp|O83687|RLME_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705319|sp|B2S3S1|RLME_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|3322979|gb|AAC65645.1| cell division protein (ftsJ) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018482|gb|ACD71100.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060048|gb|ADD72783.1| ribosomal RNA large subunit methyltransferase J [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 200

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 13/196 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV----AARITGS 91
           D + ++A   G+RARS YKL  +++K+ +L    R++DLG++PGSW+Q     AA  T  
Sbjct: 8   DFWAKKAAAAGYRARSVYKLAALDKKYSLLSRASRVLDLGAAPGSWTQYVLGTAAACTAV 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            A + + +A DI D      ++  + D    D+    R A     DL+LSD A  T G+R
Sbjct: 68  CAVDVQPIASDIQDAR----LQRVQGDLCAADTRA--RVACNAPFDLILSDAAPRTTGNR 121

Query: 152 KIDHLRTMSLCEAATFFA-LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            +D   + S C AA   A +  L+  G  + K FQG     IL  L+ HF  V   KP A
Sbjct: 122 TVDT--SASACLAAGVCAYVNFLSSDGGLVFKVFQGSEHLAILTHLRAHFGAVCSFKPPA 179

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E++++A+ FR
Sbjct: 180 SRPRSCELYVVARFFR 195


>gi|169779173|ref|XP_001824051.1| AdoMet-dependent rRNA methyltransferase spb1 [Aspergillus oryzae
           RIB40]
 gi|238499797|ref|XP_002381133.1| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]
 gi|83772790|dbj|BAE62918.1| unnamed protein product [Aspergillus oryzae]
 gi|220692886|gb|EED49232.1| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]
          Length = 802

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAECMPA---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SIIIGVDLAPIKPIPRVITFQSDITTEKCRTTIRQHLKHWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNALLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|47225726|emb|CAG08069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 842

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RS++KL+Q+N K Q LQ  R +VDL ++PG W QVA++       +
Sbjct: 13  DKFYHLAKETGYRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQVASKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + ++ +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGA-PNVGANWQH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A E L  GG F+ K F+      ++ + ++ F KV   KP ASR 
Sbjct: 129 DAFSQAHLTLMALKLACEFLTKGGTFVTKVFRSKDYQPLIWIFQQFFNKVQSTKPQASRN 188

Query: 214 ESVEMFLLAKG 224
           ES E+F++ +G
Sbjct: 189 ESAEIFVVCQG 199


>gi|332701181|ref|ZP_08421269.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551330|gb|EGJ48374.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 208

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y ++A+ + + ARS YKL +IN++  IL+  ++++DLG++PGSW+  AA++ G 
Sbjct: 2   KKYQDHYFKQAKKDNYPARSVYKLQEINKRFGILRPGQKVLDLGAAPGSWTLFAAKVVGQ 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                +V+ +D+          V+F   D  +  +            D+V+SDMA  T G
Sbjct: 62  GG---KVLGVDLQSTSTDFPDNVRFLVGDVFEPPAEVQAAMEELAPFDVVVSDMAPKTSG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D   +  LC  A   A + L  GG+F+ K F+G        +L++ F  V + KP 
Sbjct: 119 IIFRDQAFSFDLCVRALEVADKYLAKGGNFVAKIFEGPDVRQFAAMLRERFVTVKNFKPQ 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR+ES E F +  GF+
Sbjct: 179 SSRSESKETFYIGLGFK 195


>gi|320593636|gb|EFX06045.1| rRNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 858

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +   N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAETMPA---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++ I  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SIIVGVDLSPIKSIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSFNQAELALQAMKLATDFLIEGGTFVTKVFRSKDYNSLLWVFNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|67480103|ref|XP_655413.1| ribosomal RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
 gi|56472547|gb|EAL50027.1| ribosomal RNA methyltransferase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 829

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+RARSA+KL+Q+N+++  L S   ++DL ++PG W QVA   T      
Sbjct: 13  DKYYHLAKQYGYRARSAFKLVQMNKRYDFLSSAHILIDLCAAPGGWCQVA---TKEMPVE 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS----WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
           +++  +   D+EPIL +        D+ +     E  +   G + D+VL D   P +G  
Sbjct: 70  SKIFGV---DLEPILPIPRCTTYVGDITTGMCFAEMKKLMKGEHADVVLHD-GSPNMGKS 125

Query: 152 KIDHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            I    T S LC AA  FA+  L  GG F+ K F+      IL + +K F+ VI  KP A
Sbjct: 126 WIQDAYTQSELCIAALKFAVTFLKKGGWFISKVFRSQDYYAILFVFEKFFKSVIATKPPA 185

Query: 211 SRAESVEMFLLAKGF 225
           SR  S E++L+ K F
Sbjct: 186 SRNTSAEVYLVCKDF 200


>gi|224011377|ref|XP_002295463.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583494|gb|ACI64180.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 221

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 24/218 (11%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-AARI 88
           L+R   D + ++A+  G+RARSA+KL+QI+ +  +L    R VDL ++PG WSQV   RI
Sbjct: 4   LSRDKRDVFYRKAKETGYRARSAFKLIQIDNEFDLLV--HRAVDLCAAPGGWSQVLVERI 61

Query: 89  --------------------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
                               +G N     +VA+D+  MEP+ GV   + D   L++ + I
Sbjct: 62  VPQDAVAKTEASTKDKLNGASGENIGTPAIVAVDLWPMEPLPGVHCIQGDITSLETAQKI 121

Query: 129 RQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
            Q   G   +LV+ D A         D      L  +A   +  +L+  G F+ K F+G 
Sbjct: 122 IQHFHGRRAELVVCDGAPDVTNLHSFDSYTQSQLLLSAINISTHVLSPNGIFVAKIFRGR 181

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               I   L+  F+ V+  KP ASR  S+E F++ +GF
Sbjct: 182 DVGLIYTQLQLLFENVVCAKPTASRNASIESFVVCRGF 219


>gi|119478916|ref|XP_001259487.1| rRNA methyltransferase Spb1, putative [Neosartorya fischeri NRRL
           181]
 gi|119407641|gb|EAW17590.1| rRNA methyltransferase Spb1, putative [Neosartorya fischeri NRRL
           181]
          Length = 794

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    + +  
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPTQSI- 71

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
             ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 72  --IIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|159119934|ref|XP_001710185.1| FtsJ-like protein [Giardia lamblia ATCC 50803]
 gi|157438303|gb|EDO82511.1| FtsJ-like protein [Giardia lamblia ATCC 50803]
          Length = 268

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +++   D Y + A+ EGWRARSAYKLLQ++E++ + +   R VDL ++PGSWSQV +   
Sbjct: 1   MSKDKRDIYYRLAKDEGWRARSAYKLLQLDEQYDLFRGVTRAVDLCAAPGSWSQVLSHKL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
            ++A    ++++D+  M P+  V   + D    +  + I +   G    LV+ D A    
Sbjct: 61  PADAI---IISVDLAPMAPLPRVTQIQGDITRKEVADKIIELCHGEMCQLVVCDGAPDVT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV-K 207
           G   +D      L + A   A ++L  GG F+ K F+G     +L      F K + + K
Sbjct: 118 GVHDLDEYVQAGLVDHAMTLARQILAPGGTFVSKVFRGECLESLLRRNALSFFKTVDISK 177

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S+E F++   +
Sbjct: 178 PDASRASSMECFMVCADY 195


>gi|327297282|ref|XP_003233335.1| rRNA methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326464641|gb|EGD90094.1| rRNA methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 834

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 35  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 91

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 92  SLIVGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 150

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 151 DAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 210

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 211 VSAEIFVVCLGFK 223


>gi|255954021|ref|XP_002567763.1| Pc21g07220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589474|emb|CAP95619.1| Pc21g07220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 838

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ +R  +DL ++PGSW QVAA    S    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNQKYGFLEKSRVCIDLCAAPGSWCQVAAEYMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI     F+ D         IR  I     D+VL D A P +G   + 
Sbjct: 70  SLIIGVDLSPIKPIPRAITFQSDITTDKCRATIRSHIKHWKADVVLHDGA-PNVGSAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A + L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLESLRLATDFLGEGGTFVTKVFRSKDYNPLLWVFKQLFNSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|328771243|gb|EGF81283.1| hypothetical protein BATDEDRAFT_10491 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 283

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS--NA 93
           D Y + A+ +GWRARSA+KLLQI+E++ I +  + +VDL ++PGSWSQV +R   S  + 
Sbjct: 10  DIYYRLAKEQGWRARSAFKLLQIDEEYNIFEDVKNVVDLCAAPGSWSQVLSRRLASTDST 69

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRK 152
             +++VA+D+  M P+ GV   + D     + E I     G   DLV+ D A    G   
Sbjct: 70  KQSKIVAVDLQAMAPLPGVIQIQGDITKKSTAELITSHFDGEKADLVICDGAPDVTGLHD 129

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           +D      L  AA      +L  GG F+ K F+G   + +   ++  F  V   KP
Sbjct: 130 MDEYIQAQLLLAAFNITSHVLRNGGTFIAKIFRGKDISLLFAQMRLFFPLVDVAKP 185


>gi|296127776|ref|YP_003635028.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira murdochii
           DSM 12563]
 gi|296019592|gb|ADG72829.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira murdochii
           DSM 12563]
          Length = 193

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 18/202 (8%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAARI-- 88
           + + D Y ++A+ E ++ARS +KL +   K + ++S+  ++D+G SPGS+SQ +  +I  
Sbjct: 2   KKVQDFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDTVLDVGCSPGSFSQYMLNKILK 61

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKF---DFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           TGS      VV +DIL        + F F   D  D+D+  F         D+V+SD   
Sbjct: 62  TGS------VVGVDILPNS--FAHQRFTFMLGDIKDMDASSFNNTLF----DVVVSDAMP 109

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T   R+ +H R++SLC A    A ++L   G F +K F G         L  +F+ V  
Sbjct: 110 NTTSDRETNHFRSVSLCRAIFNLAKDVLKENGHFFIKVFDGKDLQMFKKELSGYFESVNV 169

Query: 206 VKPVASRAESVEMFLLAKGFRK 227
            KP +SR ES E+FL  K F+K
Sbjct: 170 FKPKSSRDESREVFLFCKNFKK 191


>gi|70997385|ref|XP_753441.1| rRNA methyltransferase Spb1 [Aspergillus fumigatus Af293]
 gi|73621934|sp|Q4WVH3|SPB1_ASPFU RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|66851077|gb|EAL91403.1| rRNA methyltransferase Spb1, putative [Aspergillus fumigatus Af293]
 gi|159126832|gb|EDP51948.1| rRNA methyltransferase Spb1, putative [Aspergillus fumigatus A1163]
          Length = 795

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    + +  
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPTQSI- 71

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
             ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 72  --IIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|322504161|emb|CAM41440.2| putative FtsJ-like methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 457

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 110/247 (44%), Gaps = 56/247 (22%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAARI---- 88
           D Y ++A+ EG+RARSAYKLLQI E+  IL         VDL ++PGSWSQV A+     
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQIEEEFHILDPAEIRTGAVDLCAAPGSWSQVLAQCFKTI 69

Query: 89  -----------TGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR-----QA 131
                          A   RVVA+D+ +M PI GV   + D   ++ + E IR      +
Sbjct: 70  GANATAAAVAGAALPAQTPRVVAVDLQEMAPIDGVAILQGDITSEVTANEIIRLLNAPNS 129

Query: 132 IGG--------------------------------NPDLVLSDMAYPTIGHRKIDHLRTM 159
            GG                                  D+VL D A    G  ++D     
Sbjct: 130 TGGPCTDDEQQQQPTSSNPSSSSSSHPPVLCASQRKADIVLCDGAPDVTGMHELDEYLQH 189

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  AA      +L  GG FL K F+G  T  ++   +  F++V  VKP +SR  S+E F
Sbjct: 190 HLLLAALHITTFVLRAGGCFLTKMFRGPNTAFLIAKSEIFFEQVRVVKPKSSRNASMESF 249

Query: 220 LLAKGFR 226
           LL +GFR
Sbjct: 250 LLCQGFR 256


>gi|154331472|ref|XP_001561554.1| FtsJ-like methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 457

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 110/247 (44%), Gaps = 56/247 (22%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAARI---- 88
           D Y ++A+ EG+RARSAYKLLQI E+  IL         VDL ++PGSWSQV A+     
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQIEEEFHILDPAEIRTGAVDLCAAPGSWSQVLAQCFKTI 69

Query: 89  -----------TGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR-----QA 131
                          A   RVVA+D+ +M PI GV   + D   ++ + E IR      +
Sbjct: 70  GANATAAAVAGAALPAQTPRVVAVDLQEMAPIDGVAILQGDITSEVTANEIIRLLNAPNS 129

Query: 132 IGG--------------------------------NPDLVLSDMAYPTIGHRKIDHLRTM 159
            GG                                  D+VL D A    G  ++D     
Sbjct: 130 TGGPCTDDEQQQQPTSSNPSSSSSSHPPVLCASQRKADIVLCDGAPDVTGMHELDEYLQH 189

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  AA      +L  GG FL K F+G  T  ++   +  F++V  VKP +SR  S+E F
Sbjct: 190 HLLLAALHITTFVLRAGGCFLTKMFRGPNTAFLIAKSEIFFEQVRVVKPKSSRNASMESF 249

Query: 220 LLAKGFR 226
           LL +GFR
Sbjct: 250 LLCQGFR 256


>gi|171692335|ref|XP_001911092.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946116|emb|CAP72917.1| unnamed protein product [Podospora anserina S mat+]
          Length = 954

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA        +
Sbjct: 108 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAETM---PKD 164

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IR  +     D VL D A P +G   + 
Sbjct: 165 SIIIGVDLSPIKPIPKVITFQSDITTEKCRATIRTHLKTWKADCVLHDGA-PNVGTAWVQ 223

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +LK+ F KV   KP +SR 
Sbjct: 224 DSFNQAELALHSLKLATEFLIEGGAFVTKVFRSKDYNSLLWVLKQLFTKVEATKPPSSRN 283

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  G++
Sbjct: 284 VSAEIFVVCLGYK 296


>gi|242010550|ref|XP_002426028.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
 gi|212510038|gb|EEB13290.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
          Length = 839

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 6/198 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KLLQ+N K   L+S++ ++DL ++PG W QVA +  
Sbjct: 7   IGKQRKDRYYKLAKETGFRSRAAFKLLQLNRKFGFLESSKVLIDLCAAPGGWMQVAKQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
            +   ++ +V +D+  ++PI G      D         + +A+     D+VL D A P +
Sbjct: 65  -NMPVSSVIVGVDLFPIKPIPGCISLVEDITTSKCKSSLTKALQTWKADVVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   I D  + + L  +A     E L  GG F+ K F+    N +L + K+ F+KV   K
Sbjct: 123 GTNWIHDAYQQVCLTLSALKLGTEFLREGGWFITKVFRSSDYNSLLWVFKQLFKKVQATK 182

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR+ES E+F+  K F
Sbjct: 183 PQASRSESAEIFVACKHF 200


>gi|326481598|gb|EGE05608.1| rRNA methyltransferase Spb1 [Trichophyton equinum CBS 127.97]
          Length = 791

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 70  SLIVGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|46136703|ref|XP_390043.1| hypothetical protein FG09867.1 [Gibberella zeae PH-1]
          Length = 301

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 63/234 (26%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAAR 87
           W  R   D Y + A+++G ++R+A+KLL+++ K+++ + S + +VDLG +PGSWSQVA  
Sbjct: 37  WKQRQGRDSYARGAKVQGLKSRAAFKLLEMDSKYKLFKGSGQTVVDLGYAPGSWSQVAVE 96

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------------GGN 135
            T  +    RV+ ID++  +P  GV  F+ DFL  D  E ++  I             G+
Sbjct: 97  KTKPHG---RVIGIDLIPAQPPRGVATFQGDFLSPDVQEMVKNFILESHRRPPPLQDEGD 153

Query: 136 P--------------------------DLVLSDMAYP---------------------TI 148
           P                          ++VLSDM+ P                     T 
Sbjct: 154 PENSTPDEAAALDRPSYLDMERHAAQDEVVLSDMSEPWDQTTGFNVNTLSNPYHRLMNTS 213

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           G+   DH  +M LC AA  FA + L  GG F+ K +QG    D    L+  F K
Sbjct: 214 GNAFRDHAGSMDLCAAALQFASDTLRSGGHFVCKFYQGSEDRDFEKKLRTLFTK 267


>gi|197097760|ref|NP_001125667.1| putative rRNA methyltransferase 3 [Pongo abelii]
 gi|73621845|sp|Q5RAS1|RRMJ3_PONAB RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|55728800|emb|CAH91139.1| hypothetical protein [Pongo abelii]
          Length = 841

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|159477739|ref|XP_001696966.1| hypothetical protein CHLREDRAFT_105410 [Chlamydomonas reinhardtii]
 gi|158274878|gb|EDP00658.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 328

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N K+  L   R ++DL ++PG W QVAA+   +    
Sbjct: 12  DKFYHLAKEQGFRSRAAFKLIQLNRKYNFLGKCRTLLDLCAAPGGWLQVAAK---TMPVG 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
           + ++ +D+  ++PI GVK    D         I R+A G   D+VL D A    G    +
Sbjct: 69  SLILGVDLAPIKPIRGVKTLVQDITTQQCRTAIKREAGGAKMDVVLHDGAPNVGGAWASE 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   +   A+E L   G F+ K F+    N +L    + F KV   KP ASR  
Sbjct: 129 AYNQSSLVLDSLRLAVETLAPKGTFVTKIFRSKDYNALLYAFNQLFDKVEATKPAASRNT 188

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 189 SAEIFVVCLGFK 200


>gi|161528903|ref|YP_001582729.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosopumilus maritimus
           SCM1]
 gi|226705297|sp|A9A3M9|RLME_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160340204|gb|ABX13291.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosopumilus maritimus
           SCM1]
          Length = 197

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 103/190 (54%), Gaps = 3/190 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A  +G+R+R+AYKL ++N+ ++I+     ++DLG +PG W+Q+A ++ G   N 
Sbjct: 9   DHYRKLAHEQGFRSRAAYKLKELNQSYRIIGPGFYVLDLGCAPGGWTQMAIKLAG---NQ 65

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            +V+ ID+  +E I G +  + D  D +  + +        + V+ D++    G+  +DH
Sbjct: 66  GKVMGIDLSYVEEIPGAEILRGDIEDENVVDDVMNYFERKVNAVICDLSPKVSGNWSVDH 125

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            + +SL    T    ++L   G+ + K F G  + +    +KK F ++   KP ASR +S
Sbjct: 126 AKQISLNYDCTKIMDKVLAHKGNAVFKVFDGEYSMEFRDYVKKKFARINLTKPKASRKQS 185

Query: 216 VEMFLLAKGF 225
            E++ +  GF
Sbjct: 186 SELYYVCLGF 195


>gi|23331072|gb|AAH36710.1| FtsJ homolog 3 (E. coli) [Homo sapiens]
 gi|123983012|gb|ABM83247.1| FtsJ homolog 3 (E. coli) [synthetic construct]
 gi|123997695|gb|ABM86449.1| FtsJ homolog 3 (E. coli) [synthetic construct]
 gi|189054652|dbj|BAG37502.1| unnamed protein product [Homo sapiens]
 gi|307685131|dbj|BAJ20496.1| FtsJ homolog 3 [synthetic construct]
          Length = 847

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|18028291|gb|AAL56015.1|AF327355_1 hypothetical protein SB92 [Homo sapiens]
          Length = 847

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|289621680|emb|CBI51591.1| unnamed protein product [Sordaria macrospora]
          Length = 833

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++  +DL ++PGSW QV A    +   N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMPT---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IR  +     D+VL D A P +G   + 
Sbjct: 70  SIIIGVDLAPIKPIPKVITFQSDITTEKCRATIRTHLKTWKADVVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSYNQAELALHSLKLATEFLVEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|332848815|ref|XP_003315725.1| PREDICTED: putative rRNA methyltransferase 3 isoform 1 [Pan
           troglodytes]
          Length = 847

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|307199137|gb|EFN79847.1| Putative rRNA methyltransferase 3 [Harpegnathos saltator]
          Length = 853

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 6/196 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K++ LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGYRSRAAFKLIQLNRKYEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDF-LDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ VV +D+  ++PI G      D   D       R+      D+VL+D A P +
Sbjct: 65  -NMPVSSIVVGVDLFPIKPIPGCINLTEDITTDKCRIAITRELKTWKADVVLNDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  +   L  AA   A + L  GG F+ K F+    + ++ +LK+ F+KV   K
Sbjct: 123 GKNWLHDAYQQAVLTLAAIKLAAQFLRAGGWFVTKIFRSKDYHPLIWVLKQLFKKVHATK 182

Query: 208 PVASRAESVEMFLLAK 223
           P ASR ES E+F++ +
Sbjct: 183 PQASRNESAEIFVVCQ 198


>gi|219684632|ref|ZP_03539575.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           PBr]
 gi|219671994|gb|EED29048.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           PBr]
          Length = 192

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 9/197 (4%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            + D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   RLGDEYFQKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                +V++DI D  +  +    F K D    D+   I +   G   LV+SD+A  T G+
Sbjct: 58  LKRGVLVSVDINDISLRYVDNFYFIKGDIFSDDTAYKINKF--GPYSLVISDVAPKTTGN 115

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A
Sbjct: 116 RLVDTSNSFNLSMRIIDLSFEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKA 175

Query: 211 SRAESVEMFLLAKGFRK 227
            R  S E++ L K F K
Sbjct: 176 VRKNSFEIYFLGKSFGK 192


>gi|194097365|ref|NP_060117.3| putative rRNA methyltransferase 3 [Homo sapiens]
 gi|296452883|sp|Q8IY81|RRMJ3_HUMAN RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|119614679|gb|EAW94273.1| FtsJ homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
 gi|119614680|gb|EAW94274.1| FtsJ homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
 gi|119614681|gb|EAW94275.1| FtsJ homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
          Length = 847

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|66357152|ref|XP_625754.1| Spb1p-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
 gi|46226949|gb|EAK87915.1| Spb1p-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
          Length = 1011

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KL+Q+ +K  I ++ + +VDL ++PG W QVA R  G ++  
Sbjct: 13  DRYYHLAKEQGYRARSAFKLIQLAQKFNIFKNCQVLVDLCAAPGGWLQVAKRNMGVSS-- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR-KI 153
            +++ +D++ ++ I GV  FK D       + I   + G P D+VL D A P +G     
Sbjct: 71  -KIIGVDLVAIKGIPGVTTFKCDITTERCRKLIFDELNGIPVDVVLHDGA-PNVGTSWDK 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E+L   G F+ K F+    N +L +L + F  V   KP +SR 
Sbjct: 129 DAYIQNELVLHSAELACEILRPNGIFVTKVFRSTDYNSVLWVLSQLFNTVKATKPQSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+FL+  G++
Sbjct: 189 VSAEIFLVCLGYK 201


>gi|212529376|ref|XP_002144845.1| rRNA methyltransferase Spb1, putative [Penicillium marneffei ATCC
           18224]
 gi|210074243|gb|EEA28330.1| rRNA methyltransferase Spb1, putative [Penicillium marneffei ATCC
           18224]
          Length = 794

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPA---G 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         +R  +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTDKCRSTLRSHVKHLKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFTQAELVLQSMKLATEFLREGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|311266963|ref|XP_003131335.1| PREDICTED: putative rRNA methyltransferase 3-like [Sus scrofa]
          Length = 836

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|216263778|ref|ZP_03435772.1| ribosomal RNA large subunit methyltransferase J [Borrelia afzelii
           ACA-1]
 gi|215979822|gb|EEC20644.1| ribosomal RNA large subunit methyltransferase J [Borrelia afzelii
           ACA-1]
          Length = 192

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 4   LNDEYSQKAKREGYLARSVYKLIEINEKFSLF-SYGNVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +VA+DI D  +  +    F K D    D+   I     G   LV+SD A  T G+R
Sbjct: 59  KRGILVAVDINDIGLRHVDNFYFVKGDIFSDDTVFKINTL--GPYSLVISDAAPRTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEIQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|169614552|ref|XP_001800692.1| hypothetical protein SNOG_10422 [Phaeosphaeria nodorum SN15]
 gi|111060696|gb|EAT81816.1| hypothetical protein SNOG_10422 [Phaeosphaeria nodorum SN15]
          Length = 836

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+ +  +    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVASEVMPA---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI     F+ D         +RQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRCITFQSDITTDKCRATLRQHLKHFKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DAFTQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNSLLWVFNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|308161650|gb|EFO64088.1| FtsJ-like protein [Giardia lamblia P15]
          Length = 268

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +++   D Y + A+ EGWRARSAYKLLQ++ ++ + +   R VDL ++PGSWSQV +   
Sbjct: 1   MSKDKRDIYYRLAKDEGWRARSAYKLLQLDAQYDLFRGVTRAVDLCAAPGSWSQVLSHKL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
            ++A    ++++D+  M P+  V   + D    +  + I +   G    LV+ D A    
Sbjct: 61  PADAV---IISVDLAPMAPLPRVTQIQGDITRKEVADKITELCHGEMCQLVVCDGAPDVT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV-K 207
           G   +D      L + A   A ++L   G F+ K F+G     +L      F K + + K
Sbjct: 118 GVHDLDEYVQAGLVDHAMALARQILAPDGTFVSKVFRGECLESLLRRNALSFFKNVDISK 177

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S+E F++ +G+
Sbjct: 178 PDASRASSMECFMVCRGY 195


>gi|111115138|ref|YP_709756.1| cell division protein [Borrelia afzelii PKo]
 gi|123047013|sp|Q0SNJ8|RLME_BORAP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110890412|gb|ABH01580.1| cell division protein [Borrelia afzelii PKo]
          Length = 189

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 1   MNDEYSQKAKREGYLARSVYKLIEINEKFSLF-SYGNVLDIGASPGSFSQYAYK----KL 55

Query: 94  NNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +VA+DI D  +  +    F K D    D+   I     G   LV+SD A  T G+R
Sbjct: 56  KRGILVAVDINDIGLRHVDNFYFVKGDIFSDDTVFKINTL--GPYSLVISDAAPRTTGNR 113

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 114 LVDTSNSFNLSMRIIDLSLEVLIKKGNLLVKVFQGGDEIQIFKKFEKYFKFVKKIRPKAV 173

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 174 RKNSFEIYFLGKSFGK 189


>gi|303311695|ref|XP_003065859.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240105521|gb|EER23714.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320039764|gb|EFW21698.1| FtsJ-like methyltransferase [Coccidioides posadasii str. Silveira]
          Length = 380

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 113/268 (42%), Gaps = 78/268 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  ---------------------------TGSNA----------------------NNTRVV 99
                                      TG  +                       N R+V
Sbjct: 70  KGESFGRRAWEEKRKKQLRDLRRCEEETGRESFSEETQKKGDIDEDGSQILKPRKNVRIV 129

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI---------GGNP-------------D 137
           AID+  M P+ G+   K D     +   + +A+          GN              D
Sbjct: 130 AIDLQPMAPLDGITTLKADITHPSTIPLLLKALDPDLYSENENGNTSTPSPSRPHPHPVD 189

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK
Sbjct: 190 LVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLK 249

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
             F+KV   KP +SRA S+E F++ +GF
Sbjct: 250 TVFEKVSVAKPRSSRASSLEAFVVCEGF 277


>gi|301165470|emb|CBW25041.1| 23S rRNA methyltransferase [Bacteriovorax marinus SJ]
          Length = 197

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 13/199 (6%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y ++A+ + + ARS YKL +I+ K +I+    ++VD G  PGSW Q  +R  G+  
Sbjct: 5   VQDHYFKKAKKDDFLARSVYKLEEIDSKFKIINKGDQVVDFGYHPGSWVQYTSRRVGAEG 64

Query: 94  NNTRVVAIDILDMEPIL----GVKFFKFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPT 147
              +V+ IDI  +   L     V  F+ D  D+D+       +G +   D+VLSDMA  T
Sbjct: 65  ---KVIGIDIRPLNKKLLTLKNVTLFEKDIFDVDT----TSQLGADNKFDVVLSDMAPNT 117

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G R +D  R+++L E         L   G+ ++K F        L   K  F++   +K
Sbjct: 118 TGIRSVDQDRSLNLVEKVFEVLPVFLKENGNMVIKVFDSHQAQKFLKESKGLFKQYDFLK 177

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ++R+ S E F++ +G++
Sbjct: 178 PKSTRSVSKEFFVIGRGYK 196


>gi|242763691|ref|XP_002340625.1| rRNA methyltransferase Spb1, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218723821|gb|EED23238.1| rRNA methyltransferase Spb1, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 798

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPA---G 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         +R  +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQSDITTDKCRSTLRSHVKHLKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFTQAELVLQSMKLATEFLREGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|170096322|ref|XP_001879381.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645749|gb|EDR09996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 249

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 28/226 (12%)

Query: 29  WLNRHINDPYVQR--AQLEGWRARSAYKLLQINEKHQILQSN---RRIVDLGSSPGSWSQ 83
           W+ R   DPYV++  +    +R+RSA+KLL+IN++     +    + +VDLG++PG WSQ
Sbjct: 20  WIARQARDPYVKKRLSDPASYRSRSAFKLLEINDQWDSFLTKPDVKAVVDLGAAPGGWSQ 79

Query: 84  VAA------RITGSNANNTR--VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ--AIG 133
           V         +  S+A   R  +VA+D+L M+PI GV   + DFL  ++   I    ++ 
Sbjct: 80  VPYDPLNIDDLEPSSALTGRGTIVAVDLLKMQPIHGVHAIQADFLAAETERRIHNLLSVK 139

Query: 134 GN----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI--------GGDFLV 181
           GN     D++LSD+A    G+   D   ++ +CEA   FA + L          GG  L+
Sbjct: 140 GNLECKADIILSDIAANASGNDVHDIESSLEICEAVFCFARQYLRSAERIGRRRGGVLLM 199

Query: 182 KTFQGGTTNDI-LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+        +  L  +F  V ++KP +SR+ S E + L +G++
Sbjct: 200 KHFEHPLLQKFRVEKLLPNFHDVRYIKPDSSRSASREGYFLCQGWK 245


>gi|68473115|ref|XP_719363.1| potential mitochondrial rRNA methyltransferase [Candida albicans
           SC5314]
 gi|46441176|gb|EAL00475.1| potential mitochondrial rRNA methyltransferase [Candida albicans
           SC5314]
 gi|238880388|gb|EEQ44026.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 271

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 33/244 (13%)

Query: 12  GLTQKVKNRSCQG-----------SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
            L+ K +NR C             + R +++   ND Y  + +   +++R+A+KL +I+ 
Sbjct: 3   SLSIKFRNRHCNNLLIFARNKSKQNVRKYIDSVSNDTYSNKRRQSLFKSRAAFKLQEIDS 62

Query: 61  KHQIL-QSNRRIVDLGSSPGSWSQVAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           K++I  +  + IVDLG +PG+W+Q A  R+   N ++  ++ IDI    P+ G  + + D
Sbjct: 63  KYRIFTKRTKNIVDLGFAPGAWTQFAVHRLEEQNLSHN-ILGIDINLATPVKGCHYMQGD 121

Query: 119 FLDLDSWEFIRQAIGGNP-------------------DLVLSDMAYPTIGHRKIDHLRTM 159
            ++  +   IR                          DL++SDM     G    DH+  M
Sbjct: 122 IMNKSTHAKIRNFFEKQRLRETQDYQTDTSSDEEKQLDLIMSDMMVDCTGTGSADHIGNM 181

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LC AA + A   L    D ++K + G         +   F+KVIH+KP AS+  S E++
Sbjct: 182 ELCTAALYLAYSELKPEKDMILKVWSGSELKLFETRMNIMFKKVIHIKPDASKDRSSELY 241

Query: 220 LLAK 223
           ++ +
Sbjct: 242 MVGR 245


>gi|219685646|ref|ZP_03540461.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           Far04]
 gi|219672834|gb|EED29858.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           Far04]
          Length = 192

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 9/197 (4%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            + D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   RLGDEYFQKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                +V++DI D  +  +    F K D    D+   I +   G   L++SD+A  T G+
Sbjct: 58  LKRGVLVSVDINDISLRYVDNFYFIKGDIFSDDTAYKINKF--GPYSLIISDVAPKTTGN 115

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A
Sbjct: 116 RLVDTSNSFNLSMRIIDLSFEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKA 175

Query: 211 SRAESVEMFLLAKGFRK 227
            R  S E++ L K F K
Sbjct: 176 VRKNSFEIYFLGKSFGK 192


>gi|224534384|ref|ZP_03674962.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           spielmanii A14S]
 gi|224514486|gb|EEF84802.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           spielmanii A14S]
          Length = 192

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 7/196 (3%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            +ND Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   RLNDEYSQKAKREGYLARSVYKLIEINEKFSLF-SYGNVLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR 151
                +VA+DI D+  +  V  F F   D+ S++ + +     P  LV+SD A  T G+R
Sbjct: 58  LKRGVLVAVDINDI-ALRYVDNFYFIRGDVFSYDTVFKINTLGPYSLVISDAAPRTSGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LIDTSNSFNLSMRIIDLSFEVLLKKGNLLVKVFQGGDEVQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|154309412|ref|XP_001554040.1| hypothetical protein BC1G_07600 [Botryotinia fuckeliana B05.10]
 gi|150852424|gb|EDN27616.1| hypothetical protein BC1G_07600 [Botryotinia fuckeliana B05.10]
          Length = 807

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA        +
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAETMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IR        D VL D A P +G   + 
Sbjct: 70  SLIVGVDLSPIKPIPRVITFQSDITTEKCRATIRTHFKSWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSFNQAELALQSLKLATEFLAPGGTFVTKVFRSKDYNSLLWVFNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|298709155|emb|CBJ31099.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1004

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL++IN+K+  L S +  +DL ++PG W QVAA+        
Sbjct: 11  DKYYRLAKDQGFRARSAFKLIEINKKYDFLSSAKVCIDLCAAPGGWCQVAAK---HMPRG 67

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + ++ +D+L + PI  VK    D    +    +++ +     D+VL D A P +G   K 
Sbjct: 68  SIILGVDLLPIRPIPNVKTLVHDITTDECRTALKREMQTWKADVVLCDGA-PNVGTAYKK 126

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      +   A   A + L  GG F+ K ++    N ++ ++++ F++   VKP +SR+
Sbjct: 127 DAYEQNEIALHALRVATQHLKKGGTFVTKVYRSQDYNSLMWVIQQFFEEHQAVKPASSRS 186

Query: 214 ESVEMFLLAKGFR 226
           +S E+F++ + ++
Sbjct: 187 QSAEIFVVGRNYK 199


>gi|158520389|ref|YP_001528259.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans
           Hxd3]
 gi|254809550|sp|A8ZT18|RLME_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158509215|gb|ABW66182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans
           Hxd3]
          Length = 207

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 11/199 (5%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y ++A+ E + ARS YKL +I +KH +L+    ++DLG  PGSW   AA   G 
Sbjct: 9   RKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVGR 68

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--P-DLVLSDMAYPTI 148
                +V  ID+  +   +  +      L  D +E  R+A+ G   P D+VLSDMA  T+
Sbjct: 69  GG---KVTGIDLKKVATHMPAQATS---LQEDIYEIDREALAGTLGPLDVVLSDMAPDTM 122

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G++  D  R+  L  AA   AL +L  GG F+ K FQG    + + ++K  F++    KP
Sbjct: 123 GNKFTDAARSFHLAAAALDLALFLLKPGGHFVCKVFQGEDFQNFVNMVKAEFERHKVFKP 182

Query: 209 VASRAESVEMFLLAKGFRK 227
              R +S E +++  GF K
Sbjct: 183 ETCRKDSKETYVI--GFSK 199


>gi|116206520|ref|XP_001229069.1| hypothetical protein CHGG_02553 [Chaetomium globosum CBS 148.51]
 gi|88183150|gb|EAQ90618.1| hypothetical protein CHGG_02553 [Chaetomium globosum CBS 148.51]
          Length = 754

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QV A    +   +
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVCAE---TMPKD 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IR  +     D VL D A P +G   + 
Sbjct: 70  SIIVGVDLAPIKPIPKVITFQSDITTEKCRATIRTHLKTWKADCVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +L + F KV   KP +SR 
Sbjct: 129 DSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVLNQLFTKVHATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|90082607|dbj|BAE90485.1| unnamed protein product [Macaca fascicularis]
          Length = 540

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + +V +D++ ++P+  V   + D     + E  RQA+         D+VL D A P +G 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDI----TTERCRQALRKELKTWKVDVVLDDGA-PNVGA 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP 
Sbjct: 125 SWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQ 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +GF
Sbjct: 185 ASRHESAEIFVVCQGF 200


>gi|109116848|ref|XP_001116413.1| PREDICTED: putative rRNA methyltransferase 3-like isoform 2 [Macaca
           mulatta]
          Length = 843

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|149723383|ref|XP_001501025.1| PREDICTED: similar to FtsJ homolog 3 [Equus caballus]
          Length = 837

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|332243108|ref|XP_003270724.1| PREDICTED: putative rRNA methyltransferase 3-like [Nomascus
           leucogenys]
          Length = 840

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|301778303|ref|XP_002924561.1| PREDICTED: putative rRNA methyltransferase 3-like [Ailuropoda
           melanoleuca]
 gi|281351660|gb|EFB27244.1| hypothetical protein PANDA_013937 [Ailuropoda melanoleuca]
          Length = 831

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|312082095|ref|XP_003143302.1| hypothetical protein LOAG_07721 [Loa loa]
 gi|307761535|gb|EFO20769.1| hypothetical protein LOAG_07721 [Loa loa]
          Length = 602

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 6/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+R+R+A+KLLQ+N++ + LQ +R +VDL ++PG W QVA   T +   +
Sbjct: 13  DKYYHLAKEAGYRSRAAFKLLQLNKRFEFLQKSRAVVDLCAAPGGWLQVA---TQNMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           +  + +D++ ++PI      + D     + + +R+ + G   D VL D A P IG   + 
Sbjct: 70  SLCIGVDLVPIKPINRCVTLQGDITAEKTRQMVRKELRGWEADCVLHDGA-PNIGRNWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L  +A   A ++L   G F+ K F+    + ++ + +K F++V   KP ASR 
Sbjct: 129 DAFQQNCLTLSALKLATQILAKNGIFVTKVFRSSDYHHLISVFEKLFRQVHVWKPAASRL 188

Query: 214 ESVEMFLLAKGFRK 227
           ES E+F++ + + K
Sbjct: 189 ESAEIFVVCEKYLK 202


>gi|291406359|ref|XP_002719522.1| PREDICTED: FtsJ homolog 3 [Oryctolagus cuniculus]
          Length = 836

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGYFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|73965375|ref|XP_548033.2| PREDICTED: similar to FtsJ homolog 3 (E. coli) (predicted) [Canis
           familiaris]
          Length = 834

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F +V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|330916102|ref|XP_003297295.1| hypothetical protein PTT_07642 [Pyrenophora teres f. teres 0-1]
 gi|311330112|gb|EFQ94603.1| hypothetical protein PTT_07642 [Pyrenophora teres f. teres 0-1]
          Length = 835

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+ +  +   +
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVASEVMPA---H 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI     F+ D         +RQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRCITFQSDITTDKCRATLRQHLKHLKCDTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DAFTQAELVLQSMKLATEFLAEGGTFVTKIFRSKDYNSLLWVFNQLFAKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|257471440|ref|ZP_05635439.1| cell division protein FtsJ [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|311086120|gb|ADP66202.1| cell division protein FtsJ [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086693|gb|ADP66774.1| cell division protein FtsJ [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087790|gb|ADP67869.1| cell division protein FtsJ [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 154

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           ++DLG++PGSWSQ A+   G      R++A DIL + PI GV  F+ DF +  +   +  
Sbjct: 3   VIDLGAAPGSWSQYASNRIGKKG---RIIACDILPIRPITGVDIFQGDFRNKKTLNLMLN 59

Query: 131 AIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
                   LV+SDMA    G+  ID  R + LC+ A   +  +L+  G FL+K+FQG   
Sbjct: 60  TFSNITFHLVMSDMAPNITGNFSIDMPRIIELCKLALKISEHVLSKNGIFLLKSFQGEGF 119

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           N++   +K  F+K+   KP  SR  S E+F+LA
Sbjct: 120 NELYKEIKMLFKKIKICKPKTSRTRSREIFILA 152


>gi|115387475|ref|XP_001211243.1| AdoMet-dependent rRNA methyltransferase spb-1 [Aspergillus terreus
           NIH2624]
 gi|114195327|gb|EAU37027.1| AdoMet-dependent rRNA methyltransferase spb-1 [Aspergillus terreus
           NIH2624]
          Length = 806

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPA---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IR  +     D VL D A P +G   + 
Sbjct: 70  SIIIGVDLAPIKPIPRVISFQSDITTEKCRATIRSHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNALLWVFKQLFTSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|307555273|gb|ADN48048.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           ABU 83972]
          Length = 157

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 6/156 (3%)

Query: 71  IVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDLG++PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + 
Sbjct: 3   VVDLGAAPGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALL 58

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + +G +   +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG  
Sbjct: 59  ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 118

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            ++ L  ++  F KV   KP +SRA S E++++A G
Sbjct: 119 FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 154


>gi|332025804|gb|EGI65961.1| Putative rRNA methyltransferase 3 [Acromyrmex echinatior]
          Length = 836

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 6/196 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K +  Q +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGYRSRAAFKLIQLNRKFEFFQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            + + ++ V+ +D+  ++PI G      D + D       R+      D+VL+D A P +
Sbjct: 65  -NMSISSIVIGVDLFPIKPIPGCLSLVEDIMTDKCRVAISRELKTWKADVVLNDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   K
Sbjct: 123 GKSWLHDAYQQVVLTLSALKLATQFLKAGGWFVTKVFRSKDYNPLIWVLKQLFKKVHATK 182

Query: 208 PVASRAESVEMFLLAK 223
           P ASR ES E+F++ +
Sbjct: 183 PQASRNESAEIFVVCQ 198


>gi|326472373|gb|EGD96382.1| rRNA methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 812

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA     S    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVATECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 70  SLIVGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|145254616|ref|XP_001398682.1| AdoMet-dependent rRNA methyltransferase spb1 [Aspergillus niger CBS
           513.88]
 gi|134084264|emb|CAK47295.1| unnamed protein product [Aspergillus niger]
          Length = 801

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAECMPA---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A P +G   + 
Sbjct: 70  SIIVGVDLAPIKPIPRVITFQSDITTEKCRTTIRQHLKHWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLAEGGTFVTKVFRSKDYNPLLWVFKQLFASVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ + ++
Sbjct: 189 VSAEIFVVCRNYK 201


>gi|302308507|ref|NP_985433.2| AFL117Cp [Ashbya gossypii ATCC 10895]
 gi|299790664|gb|AAS53257.2| AFL117Cp [Ashbya gossypii ATCC 10895]
          Length = 303

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 123/271 (45%), Gaps = 71/271 (26%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+R   DPY + A+++  R+R+A+KL++I+E+ ++ ++ +R++DLG +PG+WSQV
Sbjct: 26  SSGRWLSRQRRDPYTREAKVQELRSRAAFKLIEIDEQFRLFRAGQRVLDLGFAPGAWSQV 85

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR--------------- 129
           A + T       +V+ +D+L  +P  GV   + + L   + E +R               
Sbjct: 86  AHQRTQPGG---KVMGVDVLPCKPPTGVSSIQANVLSRKTHELVRLYFSRHFQLNMHDEL 142

Query: 130 ------------------------QAIGG--NP------DLVLSDMAYP----------- 146
                                   Q + G  +P      D+VLSDM  P           
Sbjct: 143 HKKHGYFQHMLEERLEELQKDNSFQPLYGMADPVHEHPLDVVLSDMYEPWPQVTGFWNNF 202

Query: 147 ----------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
                     T G    DH  +M LC+AA   A+ +L  GG F+ K + G     +   L
Sbjct: 203 TNAAYSRMANTSGVAVKDHYMSMDLCDAALLCAIALLRPGGSFVCKLYTGKEDQLLERRL 262

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +K F KV   KP A R+ES E++ +    RK
Sbjct: 263 RKVFTKVRRFKPEACRSESKELYFVGLDKRK 293


>gi|15126717|gb|AAH12281.1| Ftsj3 protein [Mus musculus]
          Length = 838

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F +V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|189207701|ref|XP_001940184.1| AdoMet-dependent rRNA methyltransferase spb-1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976277|gb|EDU42903.1| AdoMet-dependent rRNA methyltransferase spb-1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 835

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+ +  +   +
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVASEVMPA---H 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI     F+ D         +RQ +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRCITFQSDITTDKCRATLRQHLKHLKCDTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DAFTQAELVLQSMKLATEFLAEGGTFVTKIFRSKDYNSLLWVFNQLFAKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|1750389|gb|AAB39254.1| FtsJ homolog [Pseudomonas aeruginosa PAO1]
          Length = 106

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 67/97 (69%), Gaps = 3/97 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ WL  H +DPYV+ AQ + +R+R++YKLL+I EK +IL+    +VDLG+ PG WSQV
Sbjct: 6   TSQRWLKEHFDDPYVKMAQRDAYRSRASYKLLEIQEKDRILRPGMTVVDLGAGPGGWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
            +R+ G   +  R++A DIL+M+ I  V F + DF +
Sbjct: 66  TSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTE 99


>gi|322795549|gb|EFZ18245.1| hypothetical protein SINV_12039 [Solenopsis invicta]
          Length = 833

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 6/196 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K Q LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKDTGYRSRAAFKLIQLNRKFQFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDF-LDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ VV +D+  ++PI G      D   D       R+      D+VL+D A P +
Sbjct: 65  -NMPVSSVVVGVDLFPIKPIPGCFSLVEDITTDKCKAALSRELKTWKADVVLNDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  +   L  +A   A + L  GG F+ K F+    + ++ +LK+ F+KV   K
Sbjct: 123 GKNWLHDAFQQSVLTLSALKLATQFLRPGGWFITKVFRSKDYHPLIWVLKQLFEKVHATK 182

Query: 208 PVASRAESVEMFLLAK 223
           P ASR ES E+F++ +
Sbjct: 183 PQASRIESAEIFVVCQ 198


>gi|71020429|ref|XP_760445.1| hypothetical protein UM04298.1 [Ustilago maydis 521]
 gi|73621943|sp|Q4P6G5|SPB1_USTMA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|46100114|gb|EAK85347.1| hypothetical protein UM04298.1 [Ustilago maydis 521]
          Length = 921

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K   L+  R  +DL ++PG W QVA++   +   N
Sbjct: 15  DKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASKFMPA---N 71

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++PI     F  D       + +RQ +     D+V+ D A P +G   + 
Sbjct: 72  SLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQILKDWKADIVIHDGA-PNVGTAWVQ 130

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A+E L  GG F+ K F+    N++L +  + F+KV   KP +SR 
Sbjct: 131 DAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNNLLWVFNQLFKKVEATKPSSSRN 190

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 191 VSAEIFVVCQGYK 203


>gi|119193911|ref|XP_001247559.1| hypothetical protein CIMG_01330 [Coccidioides immitis RS]
          Length = 380

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 113/268 (42%), Gaps = 78/268 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  ---------------------------TGSNA----------------------NNTRVV 99
                                      TG  +                       N R+V
Sbjct: 70  KGESFGRRAWEEKRKKQLRDLRRCEEETGRESFSEETQKKGDIDEDGSQILKPRKNVRIV 129

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI---------GGNP-------------D 137
           AID+  M P+ G+   K D     +   + +A+          GN              D
Sbjct: 130 AIDLQPMAPLDGITTLKADITHPSTIPLLLKALDPDLYSENENGNTSTPSPSRPHPHPVD 189

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK
Sbjct: 190 VVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLK 249

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
             F+KV   KP +SRA S+E F++ +GF
Sbjct: 250 TVFEKVSVAKPRSSRASSLEAFVVCEGF 277


>gi|58865606|ref|NP_001012014.1| putative rRNA methyltransferase 3 [Rattus norvegicus]
 gi|73621846|sp|Q5RJT2|RRMJ3_RAT RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|55778366|gb|AAH86512.1| FtsJ homolog 3 (E. coli) [Rattus norvegicus]
          Length = 829

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F +V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|225710072|gb|ACO10882.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
          Length = 201

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 7/148 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++A+ EG+RARSAYKLL++++K +IL+ N  +++ G +PG+W+QV 
Sbjct: 49  SSSWIRRQAKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVL 108

Query: 86  ARITGSNANNTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGGNP--DLVLSD 142
                S      +++ D+LD EP+   +     DF    + + I   +G +   DLVLSD
Sbjct: 109 TERVSSGT----IISCDLLDYEPVGRAIILPNSDFTSPSTQDTILSHLGKSSGFDLVLSD 164

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           MA    G  +++H + ++L   AT FAL
Sbjct: 165 MAPNASGMAELNHGQILNLSYEATKFAL 192


>gi|296476235|gb|DAA18350.1| putative rRNA methyltransferase 3 [Bos taurus]
          Length = 809

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G     
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWAH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|322491917|emb|CBZ27190.1| ribosomal RNA methyltransferase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 285

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGS 80
           QG+SR W+ R   DP+V +A+ +G+ ARSAYKL+ I+++  +   Q  R  +DLG SPG 
Sbjct: 9   QGTSRQWMQRQSQDPFVTKARQDGYVARSAYKLIHIDDRFHLFDRQHTRIAIDLGCSPGG 68

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAI------- 132
           W QV     G   +   ++ +D+L ++  I  V   + DF D+ + E + Q +       
Sbjct: 69  WCQVIRERAG---DRCFLLGVDLLPIKAQIPNVVIVQGDFTDVATQETLVQHLAHHSATL 125

Query: 133 -GGNP---------------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            GG+                D+V SDM    +G  + D  R   L   A      +L +G
Sbjct: 126 GGGDATTAVASSSSSCFTKVDVVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRVG 184

Query: 177 GDFLVKTFQG-GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           G F+ K         ++ C L + F  V   KP ASR +S E FL+ 
Sbjct: 185 GHFVCKVLGSRAVYEELWCRLSRLFLTVHTCKPPASRMQSDEAFLVG 231


>gi|72157695|ref|XP_787153.1| PREDICTED: similar to MGC140597 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 415

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 12/198 (6%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+RSA+KL+Q+N K   LQ +R  +DL ++PG W+   + + 
Sbjct: 7   IGKQRKDRYYHLAKETGYRSRSAFKLIQLNRKFSFLQESRVCIDLCAAPGGWNMPISSM- 65

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                   ++ +D+  ++PI  V  F  D         +R+ +     D VL D A P +
Sbjct: 66  --------IIGVDLFPIKPIPNVVSFTCDITTTKCRMQLRKEMKTWKADCVLHDGA-PNV 116

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D      L   A   A+E LN GG F+ K F+      +L +  + F+KV   K
Sbjct: 117 GTSWVLDAFTQAQLTLHALKLAVEFLNKGGWFITKVFRSKDYQPLLWVFHQMFRKVHVTK 176

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E+F++ +GF
Sbjct: 177 PQASRNESAEIFVVCQGF 194


>gi|13384672|ref|NP_079586.1| putative rRNA methyltransferase 3 [Mus musculus]
 gi|73621844|sp|Q9DBE9|RRMJ3_MOUSE RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|12836606|dbj|BAB23730.1| unnamed protein product [Mus musculus]
 gi|74211447|dbj|BAE26467.1| unnamed protein product [Mus musculus]
 gi|123242263|emb|CAM23780.1| FtsJ homolog 3 (E. coli) [Mus musculus]
 gi|148702334|gb|EDL34281.1| FtsJ homolog 3 (E. coli) [Mus musculus]
          Length = 838

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F +V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|115949002|ref|XP_001176916.1| PREDICTED: similar to MGC140597 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 443

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 12/198 (6%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+RSA+KL+Q+N K   LQ +R  +DL ++PG W+   + + 
Sbjct: 7   IGKQRKDRYYHLAKETGYRSRSAFKLIQLNRKFSFLQESRVCIDLCAAPGGWNMPISSM- 65

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                   ++ +D+  ++PI  V  F  D         +R+ +     D VL D A P +
Sbjct: 66  --------IIGVDLFPIKPIPNVVSFTCDITTTKCRMQLRKEMKTWKADCVLHDGA-PNV 116

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D      L   A   A+E LN GG F+ K F+      +L +  + F+KV   K
Sbjct: 117 GTSWVLDAFTQAQLTLHALKLAVEFLNKGGWFITKVFRSKDYQPLLWVFHQMFRKVHVTK 176

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E+F++ +GF
Sbjct: 177 PQASRNESAEIFVVCQGF 194


>gi|88602762|ref|YP_502940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanospirillum
           hungatei JF-1]
 gi|121697642|sp|Q2FNX6|RLME_METHJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88188224|gb|ABD41221.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanospirillum hungatei
           JF-1]
          Length = 207

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 10/187 (5%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           +A+  G+R+R+A KL +I +K+ +++ +  I+DLG++PGSW QV   +T     N  +V 
Sbjct: 13  KAKQSGYRSRAAMKLKEIIQKNPVIRPDDNILDLGAAPGSWLQVLREMT-----NGVIVG 67

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL--VLSDMAYPTIGHRKIDHLRT 158
           +D+  + PI GV+    DF D      IR+ +   P++  ++ D +    G R  D  R 
Sbjct: 68  VDLNPILPIEGVRTIIGDFSDPVVIAQIRELM---PEVNGIVCDASPKLSGQRSFDQARA 124

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           + L E A   A ++L  GG+ ++K+FQG   + +   +K+ F  V   K   +R  S EM
Sbjct: 125 IELNEMALGVARQLLKQGGNMIMKSFQGEDFSWLYNRVKQEFYSVRTYKAHTTRKGSTEM 184

Query: 219 FLLAKGF 225
           +++AK F
Sbjct: 185 YIIAKNF 191


>gi|302843764|ref|XP_002953423.1| hypothetical protein VOLCADRAFT_63770 [Volvox carteri f.
           nagariensis]
 gi|300261182|gb|EFJ45396.1| hypothetical protein VOLCADRAFT_63770 [Volvox carteri f.
           nagariensis]
          Length = 440

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+R+R+A+KL+Q+N K+  L   R ++DL ++PG W QVAA+   +    
Sbjct: 13  DKYYHLAKEQGYRSRAAFKLIQLNRKYNFLGKCRALLDLCAAPGGWLQVAAK---TMPVG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
           + ++ +D+  ++PI GVK    D         I R+A     D+VL D A    G    +
Sbjct: 70  SLILGVDLAPIKPIRGVKTLVQDITTQQCRSAIKREAGNAKMDVVLHDGAPNVGGAWASE 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L   +   A++ L   G F+ K F+    N +L    + F+KV   KP ASR  
Sbjct: 130 AYNQSTLVLDSLKLAVDTLAPKGTFVTKIFRSKDYNALLYAFNQLFEKVEATKPAASRNA 189

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 190 SAEIFVVCIGFK 201


>gi|84997481|ref|XP_953462.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304458|emb|CAI76837.1| hypothetical protein, conserved [Theileria annulata]
          Length = 920

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+R+RSA+K++Q+++K  I Q+   +VDL ++PG W QVA   +     +
Sbjct: 13  DKYYHLAKEHGYRSRSAFKIIQLSKKFNIFQNCNVLVDLCAAPGGWLQVA---SNQLPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG-HRKI 153
           + ++ +D++ ++PI GV  F+ D         I   + G N D+VL D   P +G +  +
Sbjct: 70  STIIGVDLVPIKPIKGVTTFQADIRTPKCLSLITNHLNGMNVDVVLHD-GSPNMGCNWNL 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A  +L  GG F+ K F+    N ++ +L   F KV   KP +SR 
Sbjct: 129 DAFNQNVLVLTACKMACSLLRKGGIFVTKVFRSSDYNSLVWMLSNCFDKVKVTKPQSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F +  GF+
Sbjct: 189 VSAEIFAVCIGFK 201


>gi|115496334|ref|NP_001068830.1| putative rRNA methyltransferase 3 [Bos taurus]
 gi|109659216|gb|AAI18407.1| FtsJ homolog 3 (E. coli) [Bos taurus]
          Length = 834

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVAA+       +
Sbjct: 13  DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + +V +D++ ++P+  V   + D       + +R+ +     D+VL+D A P +G     
Sbjct: 70  SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGA-PNVGASWAH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F++V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRH 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVVCQGF 200


>gi|296416047|ref|XP_002837692.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633575|emb|CAZ81883.1| unnamed protein product [Tuber melanosporum]
          Length = 354

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 57/252 (22%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-R 87
           W  R I D +   A+ +  ++R+ YKL++++ KH I    + +VDLG +PG+WSQVA  +
Sbjct: 94  WKRRQIRDVFATAAKRDDMKSRAGYKLIELDYKHGIFGPGQTVVDLGFAPGAWSQVAIDK 153

Query: 88  ITGSNANNTRVVAIDILDMEPILG----------------VKFFKFD------------- 118
           +T       RV+ +DIL   P  G                +K F  D             
Sbjct: 154 VTPEG----RVIGVDILPANPPPGVSTFQGSMKSPGVRELLKKFLMDPSRGKMRENRYLR 209

Query: 119 ---------------FLDLD---SWEFIRQAIG-----GNPDLVLSDMAYPTIGHRKIDH 155
                          +LD +     E   + +G     G  D+VLSDM   T G    DH
Sbjct: 210 KGDVDEEELEEMERGYLDRERDAEREEKFEGVGEDDTRGPVDVVLSDMLMNTSGIPVRDH 269

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
             ++ LC  A  FA+++L   G F+ K + G    ++   LK  F  V   KP ASR ES
Sbjct: 270 AYSIDLCYTAMSFAMDVLKTSGVFVCKVYSGDQECELKAKLKLMFSTVYCDKPEASRTES 329

Query: 216 VEMFLLAKGFRK 227
            E++ ++K  RK
Sbjct: 330 REVYYVSKLLRK 341


>gi|85103106|ref|XP_961445.1| AdoMet-dependent rRNA methyltransferase spb1 [Neurospora crassa
           OR74A]
 gi|73621942|sp|Q9P6V8|SPB1_NEUCR RecName: Full=AdoMet-dependent rRNA methyltransferase spb-1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|16415988|emb|CAB88626.2| conserved hypothetical protein [Neurospora crassa]
 gi|28922991|gb|EAA32209.1| AdoMet-dependent rRNA methyltransferase spb1 [Neurospora crassa
           OR74A]
          Length = 831

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++  +DL ++PGSW QV A    +   N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAE---TMPTN 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI  V  F+ D         IR  +     D+VL D A P +G   + 
Sbjct: 70  SIIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADVVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCRGFK 201


>gi|253742114|gb|EES98965.1| FtsJ-like protein [Giardia intestinalis ATCC 50581]
          Length = 268

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 5/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +++   D Y + A+ EGWRARSAYKLLQ++ ++ +     R VDL ++PGSWSQV +R  
Sbjct: 1   MSKDKRDIYYRLAKDEGWRARSAYKLLQLDAQYDLFSGVTRAVDLCAAPGSWSQVLSRKL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
             +A    ++++D+  M P+  V   + D    +  + I +   G    LV+ D A    
Sbjct: 61  PDDAI---IISVDLAPMAPLPRVIQIQGDITRKEVADKIIELCRGEMCQLVVCDGAPDVT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV-K 207
           G   +D      L + A   A  +L  GG F+ K F+G     +L      F K + V K
Sbjct: 118 GVHDLDEYVQAGLVDHAMTLARRILAPGGTFVSKVFRGECLESLLRRNALSFFKHVDVSK 177

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S+E FL+   +
Sbjct: 178 PDASRASSMECFLVCTEY 195


>gi|126308657|ref|XP_001376931.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 839

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL ++PG W QVA++       +
Sbjct: 13  DKFYHLAKETGFRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVASKFM---PVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G   + 
Sbjct: 70  SLIVGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELKTWKVDVVLNDGA-PNVGASWVH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A + L  GG F+ K F+      +L + ++ F+ V   KP ASR 
Sbjct: 129 DAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFRHVQATKPQASRQ 188

Query: 214 ESVEMFLLAKGF 225
           ES E+F++ +GF
Sbjct: 189 ESAEIFVICQGF 200


>gi|307176560|gb|EFN66047.1| Putative rRNA methyltransferase 3 [Camponotus floridanus]
          Length = 844

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 6/196 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDF-LDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ V+ +D+  ++PI G      D   D       R+      D+VL+D A P +
Sbjct: 65  -NMPVSSIVIGVDLFPIKPIPGCISLTEDITTDKCRVAISRELKTWKADVVLNDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  + + L  +A   A + L  GG F+ K F+    + ++ +LK+ F+KV   K
Sbjct: 123 GKNWLHDAYQQVVLTLSAVKLATQFLRAGGWFVTKVFRSKDYHALIWVLKQLFKKVHATK 182

Query: 208 PVASRAESVEMFLLAK 223
           P ASR ES E+F++ +
Sbjct: 183 PQASRNESAEIFVVCQ 198


>gi|307110257|gb|EFN58493.1| hypothetical protein CHLNCDRAFT_19573 [Chlorella variabilis]
          Length = 358

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 4/182 (2%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           G+R+R+++KL+Q+N  +  L   R ++DL ++PG W QVA +   +    + V+ +D++ 
Sbjct: 1   GYRSRASFKLIQLNRTYYFLSGARSLLDLCAAPGGWCQVAVK---NMPVGSLVIGVDLVA 57

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           ++PI GVK    D       + I++  GG+  D+VL D A    G    +      L   
Sbjct: 58  IKPIRGVKTLVGDITTQKCRQAIKKETGGSLIDVVLHDGAPNVGGAWATEAYSQAWLVLE 117

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A   A ++L   G F+ K F+    + +L   ++ F KV   KPVASR+ S E+F++ +G
Sbjct: 118 ALRMATDVLAPKGTFVTKVFRSKDYSPLLYAFQQLFTKVEATKPVASRSTSAEIFVVCRG 177

Query: 225 FR 226
           ++
Sbjct: 178 YK 179


>gi|154274554|ref|XP_001538128.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces capsulatus
           NAm1]
 gi|150414568|gb|EDN09930.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces capsulatus
           NAm1]
          Length = 372

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 110/259 (42%), Gaps = 69/259 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSNPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA---------------------------------------NNTRVVAIDILD 105
                G  A                                        N ++VAID+  
Sbjct: 70  KGESFGRRAWEEKRQREQKQAQRLEGVKKGVETKEQQGEEEKEILKPRKNVKIVAIDLQP 129

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-------------------DLVLSDMAYP 146
           M P+ G+   K D     +   + +A+  +                    DLVLSD A  
Sbjct: 130 MTPLDGITCLKADITHPSTIPLLLEALDPDDYTHNDTPTTTSTSHRLHPVDLVLSDGAPD 189

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK  F+ V   
Sbjct: 190 VTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLKTVFETVSVA 249

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SRA S+E F++ +GF
Sbjct: 250 KPRSSRASSLEAFVVCEGF 268


>gi|327302420|ref|XP_003235902.1| tRNA methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326461244|gb|EGD86697.1| tRNA methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 341

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 33/215 (15%)

Query: 45  EGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT---------- 89
           + WRARSA+KL+ ++E+     H    S RR+VDL ++PGSWSQV +R+           
Sbjct: 52  QNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVLSRVLIRGESFGRRQ 111

Query: 90  -----GSNA--------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
                G+           + ++V++D+  M P+ G+   + D     +   +  A+    
Sbjct: 112 YELDRGAGCVDEDVQPRRDVKIVSVDLQPMAPLEGIITLQADITHPSTVPLLLNALNDEG 171

Query: 137 -----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + 
Sbjct: 172 EEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILRPGGTFVAKIFRGRDVDV 231

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 232 LYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 266


>gi|90415764|ref|ZP_01223698.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2207]
 gi|90333087|gb|EAS48257.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2207]
          Length = 110

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 67/98 (68%), Gaps = 3/98 (3%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +  +R W+ +H+ DPYVQ +Q +G+R+R++YKLL+I EK ++++    +VDLG++PG W
Sbjct: 2   AKSKNRSWIKQHVKDPYVQMSQKDGYRSRASYKLLEIIEKDRLIRPGMTVVDLGAAPGGW 61

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           SQVA  + G   +  RV A+D+L M+ I GV F   DF
Sbjct: 62  SQVAMDLVG---HEGRVHALDLLPMDGIAGVDFILGDF 96


>gi|319760242|ref|YP_004124180.1| ribosomal RNA large subunit methyltransferase, ftsJ-like protein
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038956|gb|ADV33506.1| ribosomal RNA large subunit methyltransferase, ftsJ-like protein
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 217

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+ C   +  W  ++  D Y   A++   R+RS +KL  I++   + +    ++DLGS+P
Sbjct: 3   NKKCFTRTFKWSKKYYIDKYSNEAKVRKLRSRSWFKLQFIDQIDVLFKKGTTVIDLGSAP 62

Query: 79  GSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           G WS  AA    +  NNT  ++A DIL M+ I GV F + +  DL   + I +      D
Sbjct: 63  GGWSIYAA----NKINNTGYIMACDILPMKTIYGVDFVQGNCADL---KVINKICCWAKD 115

Query: 138 ----LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
               ++LSDM+  T G   ID   ++ L   A      +L   G F+VK FQG      L
Sbjct: 116 KKVQVILSDMSPKTTGISVIDVYNSIHLGNIALNICKYVLVFEGSFVVKIFQGKGFEQYL 175

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +K  F  V   KP +SR  S E++++AK F+
Sbjct: 176 HNVKSLFFDVKIRKPSSSRCNSREVYIVAKKFK 208


>gi|67515621|ref|XP_657696.1| hypothetical protein AN0092.2 [Aspergillus nidulans FGSC A4]
 gi|73621939|sp|Q5BH88|SPB1_EMENI RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|40746114|gb|EAA65270.1| hypothetical protein AN0092.2 [Aspergillus nidulans FGSC A4]
 gi|259489716|tpe|CBF90216.1| TPA: AdoMet-dependent rRNA methyltransferase spb1 (EC
           2.1.1.-)(2'-O-ribose RNA
           methyltransferase)(S-adenosyl-L-methionine-dependent
           methyltransferase)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BH88] [Aspergillus
           nidulans FGSC A4]
          Length = 806

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPA---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI  V  F+ D         IR  +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|156550167|ref|XP_001599955.1| PREDICTED: similar to ribosomal RNA methyltransferase [Nasonia
           vitripennis]
          Length = 832

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 106/198 (53%), Gaps = 6/198 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA    
Sbjct: 7   IGKQRRDKYYHLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVAHE-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDF-LDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ +V +D+  ++P+ G      D   D    +  R+      D+VL+D A P +
Sbjct: 65  -NMPVSSIIVGVDLFPIKPVPGCIGLIGDITTDKCRIDLARELKTWKADVVLNDGA-PNV 122

Query: 149 GHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G    ID  +  +L  +A   A + L  GG F+ K F+    N ++ + K+ F+KV   K
Sbjct: 123 GKNWLIDAYQQATLTLSALKLATQFLRPGGWFVTKVFRSKDYNPLIWVFKQMFKKVHATK 182

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E+F++ + +
Sbjct: 183 PQASRNESAEIFVVCQHY 200


>gi|134079334|emb|CAK96963.1| unnamed protein product [Aspergillus niger]
          Length = 365

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 67/257 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPDKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  -------------------------TGSNAN-----------------NTRVVAIDILDM 106
                                     G N                   N ++V+ID+  M
Sbjct: 70  KGESFGRRAWVEKKRKEKEALDRVRNGDNTTTVTSSEDTDMAELKPRKNVKIVSIDLQPM 129

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAI---------GGNP---------DLVLSDMAYPTI 148
            P+ G+   K D     +   + +A+            P         DLV+SD A    
Sbjct: 130 APLEGITTLKADITHPSTIPLLLRALDPEAYDSSTSSTPSAIRPPHPVDLVISDGAPDVT 189

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  +A   AL +L  GG F+ K F+G   + +   L+  F+KV   KP
Sbjct: 190 GLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRGRDVDLLYAQLRTVFEKVSVAKP 249

Query: 209 VASRAESVEMFLLAKGF 225
            +SRA S+E F++ +GF
Sbjct: 250 RSSRASSLEAFVVCEGF 266


>gi|71005240|ref|XP_757286.1| hypothetical protein UM01139.1 [Ustilago maydis 521]
 gi|46096465|gb|EAK81698.1| hypothetical protein UM01139.1 [Ustilago maydis 521]
          Length = 325

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 38/222 (17%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A   G+ ARSA+KLLQ++++++ L+  R +VDLG++PG WSQ     T S A   +V A+
Sbjct: 100 ATSSGYVARSAFKLLQLDDRYRFLRPGRVMVDLGAAPGGWSQAIIERTRS-ATTGKVFAL 158

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQ-----AIGGNP------------DLVLSDMA 144
           D+L +  I GV   + DFLD      +RQ     A+GG              D+V+SDM 
Sbjct: 159 DLLPVADIEGVTSIQGDFLDPTIQAKLRQLVSDAALGGRSGRDAEPQVDGFVDVVVSDMM 218

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLN------------------IGGDFLVKTFQG 186
             T GH  +D   ++ LC AAT FA++ L                        LV  +  
Sbjct: 219 ANTTGHPIVDTEASLELCRAATNFAIQNLKHDIQLMQDGERRSPTSLASKASVLVMKYFM 278

Query: 187 GTTNDIL--CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               D+    +L+KHF  V   K  ASR ES E F +  G +
Sbjct: 279 SHQADLFRRDVLEKHFHFVKAEKMDASRKESREQFWICIGLK 320


>gi|156089279|ref|XP_001612046.1| ribosomal RNA large subunit methyltransferase J family protein
           [Babesia bovis]
 gi|154799300|gb|EDO08478.1| ribosomal RNA large subunit methyltransferase J family protein
           [Babesia bovis]
          Length = 959

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 13/212 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +K+R+  G  R        D Y   A+ +G+RARSA+K++Q+ +K  I ++   +VDL +
Sbjct: 1   MKSRTKHGKER-------QDKYYYLAKEQGYRARSAFKIIQLAKKFNIFENCNVLVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGN 135
           +PG W QVA++       ++ ++ +D++ + PI GV   + D         I Q + G  
Sbjct: 54  APGGWLQVASKHLPV---SSIIIGVDLVPIRPIKGVVTIQADIRTQRCRNLINQQLRGAE 110

Query: 136 PDLVLSDMAYPTIGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
            D+VL D A P +G    +D      L   A   A  +L  GG F+ K F+    N ++ 
Sbjct: 111 VDVVLHDGA-PNVGANWNLDAFNQNVLVIEAAKLASNVLRKGGIFVTKIFRSADYNSLIW 169

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L K F +V   KP +SR  S E+F +  GFR
Sbjct: 170 TLGKCFDRVKVTKPSSSRNVSAEIFAVCIGFR 201


>gi|91090288|ref|XP_971422.1| PREDICTED: similar to CG8939 CG8939-PA [Tribolium castaneum]
 gi|270013436|gb|EFA09884.1| hypothetical protein TcasGA2_TC012032 [Tribolium castaneum]
          Length = 805

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 24/207 (11%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGFRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVAKQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFL----------DLDSWEFIRQAIGGNPDLV 139
            +   ++ ++ ID+  ++PI G      D            +L +W+          D+V
Sbjct: 65  -NMPVSSVIIGIDLFPIKPIPGCISLTEDITTEKCRVSLKKELQTWK---------ADVV 114

Query: 140 LSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           L D A P +G   + D  +   L  ++   A E L  GG F+ K F+    + ++ +LK+
Sbjct: 115 LHDGA-PNVGKNWLHDAYQQACLTLSSLKLASEFLKKGGWFITKVFRSKDYHSLIWVLKQ 173

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F+KV   KP ASR ES E+F++ + +
Sbjct: 174 FFKKVHATKPQASRNESAEIFVVCQHY 200


>gi|296415586|ref|XP_002837467.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633339|emb|CAZ81658.1| unnamed protein product [Tuber melanosporum]
          Length = 528

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA        N
Sbjct: 13  DKWYKLAKQKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAAECMPV---N 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++ I  V  F+ D         +R  +     D VL D A P +G   + 
Sbjct: 70  SLIVGVDLAPIKAIPRVITFQSDITTDKCRATLRGHLKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A + L  GG F+ K F+    N+++ +  + F KV   KP +SR+
Sbjct: 129 DAFTQAELVLQSLKLATKFLIEGGTFVTKVFRSRDFNNLMWVFNQLFTKVEATKPPSSRS 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ KG++
Sbjct: 189 VSAEIFVVCKGYK 201


>gi|156848734|ref|XP_001647248.1| hypothetical protein Kpol_1002p37 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117933|gb|EDO19390.1| hypothetical protein Kpol_1002p37 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 317

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 118/277 (42%), Gaps = 77/277 (27%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSS 77
           R    S   WL R  +DPY Q A+ +  R+R+A+KL++IN + ++   +++  ++DLG +
Sbjct: 29  RYNSNSKSRWLQRQWSDPYTQEAKDQNLRSRAAFKLIEINNRFKLFDKHKKLNVLDLGFA 88

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ------- 130
           PG+WSQV   I  S ++++ ++ +DIL  +P  GV   + + L   + + IR        
Sbjct: 89  PGAWSQV---IRKSTSDDSLILGVDILPCDPPTGVSSIQANILSKRTHDLIRLFFNESFQ 145

Query: 131 -------------------------------------------AIGGNP-DLVLSDMAYP 146
                                                      +I   P D+V+SDM  P
Sbjct: 146 LNREDNLHKDYGYFQDYLENELDSNFKEDSQTLMTDNDKPVNFSISKYPIDIVVSDMYVP 205

Query: 147 ---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
                                T G    DH +++ LC+AA   A++++   G F+ K + 
Sbjct: 206 WQVFNTHQNNITNIPNYRMANTSGLAVKDHAQSIDLCDAALVTAIDLVKPKGSFVCKLYS 265

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           G   N     LKK F K    KP +SR+ES E + + 
Sbjct: 266 GKEENLFEKRLKKVFHKAYRFKPKSSRSESKEFYFIG 302


>gi|290998754|ref|XP_002681945.1| rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi]
 gi|284095571|gb|EFC49201.1| rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi]
          Length = 823

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 6/199 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           LN    D Y   A+ +G+R+R+A+KL+Q+N+K+  L + R ++DL ++PG W QVA +  
Sbjct: 7   LNNERLDKYYHMAKEQGYRSRAAFKLVQLNKKYDFLGTARVMLDLCAAPGGWLQVAKKFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
             N+    +V +D+  ++ I  V   + D     +   ++  + G   D+VL D A P +
Sbjct: 67  PVNST---LVGVDLCPIKAIPHVTTIQGDITTKKTMTMVKNVLRGQKCDVVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D      LC  A   A E L   G F+ K F+      ++ +L + F KV   K
Sbjct: 123 GANWLKDAFSQSELCLFALKMATEFLKPEGLFITKVFRSKDYTSLMWVLNQFFTKVEATK 182

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR  S E+F++  G++
Sbjct: 183 PKASRDASAEIFVVCFGYK 201


>gi|226288116|gb|EEH43629.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Paracoccidioides
           brasiliensis Pb18]
          Length = 397

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 112/269 (41%), Gaps = 79/269 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA------------------------------------------NNTRVVAID 102
                G  A                                           N ++VAID
Sbjct: 70  KGESFGRRAWEEKRRRECSEVRKLENAKREEHKREAEGEEEKEEEQVLKPRKNVKIVAID 129

Query: 103 ILDMEPILGVKFFKFDF------------LDLDSWEFIRQ----AIGGN----------P 136
           +  M P+ G+   K D             LD D +  I         GN           
Sbjct: 130 LQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYAVISDLTTTTTTGNMPHHHPPPHPV 189

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   L
Sbjct: 190 DLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQL 249

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K  F++V   KP +SRA S+E F++ +GF
Sbjct: 250 KTVFERVSVAKPRSSRASSLEAFVVCEGF 278


>gi|225679098|gb|EEH17382.1| 2'-O-ribose methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 397

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 112/269 (41%), Gaps = 79/269 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA------------------------------------------NNTRVVAID 102
                G  A                                           N ++VAID
Sbjct: 70  KGESFGRRAWEEKRRRECSEVRKLENAKREEHKREAEGEEEKEEEQVLKPRKNVKIVAID 129

Query: 103 ILDMEPILGVKFFKFDF------------LDLDSWEFIRQ----AIGGN----------P 136
           +  M P+ G+   K D             LD D +  I         GN           
Sbjct: 130 LQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYAVISDLTTTTTTGNMPHHHPHPHPV 189

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   L
Sbjct: 190 DLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQL 249

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K  F++V   KP +SRA S+E F++ +GF
Sbjct: 250 KTVFERVSVAKPRSSRASSLEAFVVCEGF 278


>gi|119953113|ref|YP_945321.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia turicatae 91E135]
 gi|119861884|gb|AAX17652.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia turicatae 91E135]
          Length = 211

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 107/196 (54%), Gaps = 11/196 (5%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           ++ D Y +RA+ EG+ ARS YKL++I+++  +  S   I+D+G+SPGS+SQ A      N
Sbjct: 23  NVVDEYSRRAKKEGYLARSVYKLIEIDKRFSLFSSGN-ILDVGASPGSFSQYAY----GN 77

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW--EFIRQAIGGNP-DLVLSDMAYPTIG 149
             +  +VA+D+ D++      F+   F+  + +  E  ++     P  L++SD A  T G
Sbjct: 78  LKDGVLVAVDLNDIDLNFTNNFY---FIKGNIYIDEVCQKIETFAPYSLIISDAAPKTTG 134

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D   + +L       A  +L  GG+ L+K FQGG    +   LK  F+ V  ++P 
Sbjct: 135 NRLVDTSNSFNLNMRIIELASRILVKGGNLLLKVFQGGEEEQLFYKLKSCFKIVKKIRPK 194

Query: 210 ASRAESVEMFLLAKGF 225
           A R  S E++ L+K F
Sbjct: 195 AVRKNSFEIYFLSKDF 210


>gi|194749909|ref|XP_001957378.1| GF10393 [Drosophila ananassae]
 gi|190624660|gb|EDV40184.1| GF10393 [Drosophila ananassae]
          Length = 817

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQTWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             I D  + + L   +   A + L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWIYDAYQQICLTLNSLKLATQFLRSGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|302416843|ref|XP_003006253.1| AdoMet-dependent rRNA methyltransferase SPB1 [Verticillium
           albo-atrum VaMs.102]
 gi|261355669|gb|EEY18097.1| AdoMet-dependent rRNA methyltransferase SPB1 [Verticillium
           albo-atrum VaMs.102]
          Length = 718

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    +   N
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLIDLCAAPGSWCQVAAE---TMPVN 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + +V +D+  ++ I     F+ D         +RQ +     D VL D A P +G     
Sbjct: 70  SLIVGVDLAPIKAIPKCITFQSDITTDKCRATLRQHLKTWKADTVLHDGA-PNVGTAWNQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F KV   KP +SR 
Sbjct: 129 DSFNQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFNQLFTKVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 189 VSAEIFVVCRGYK 201


>gi|302407548|ref|XP_003001609.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Verticillium
           albo-atrum VaMs.102]
 gi|261359330|gb|EEY21758.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Verticillium
           albo-atrum VaMs.102]
          Length = 398

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 56/247 (22%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------- 88
           D Y + A+ +GWRARSA+KLLQ++E+  +     R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFDLFHGVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 89  --------------------------------TGSNANNTR----VVAIDILDMEPILGV 112
                                           T ++A + R    +V+ID+  + P+ GV
Sbjct: 70  GRTAWQDREASFRQQMLKIFPSGASDTDQPMTTPASATSPRDDVKIVSIDLQPISPLPGV 129

Query: 113 KFFKFDF------------LDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTM 159
              + D             LD D     +     +P DLV+SD A    G   +D     
Sbjct: 130 VTLRADITHPATVPLLLKALDPDYDATSQSKNAAHPVDLVISDGAPDVTGLHDLDIYVQS 189

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SRA SVE F
Sbjct: 190 QLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKVFFEKVIVAKPRSSRASSVEAF 249

Query: 220 LLAKGFR 226
           ++   F+
Sbjct: 250 IVCINFQ 256


>gi|145354875|ref|XP_001421700.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581938|gb|ABO99993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 376

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           R    R I D Y   A+ +G+R+R+A+KL+Q+N K+  L   R  +DL ++PG W QVA 
Sbjct: 83  RARCARSIADKYYYLAKEQGFRSRAAFKLVQLNRKYDFLSKARACMDLCAAPGGWLQVAQ 142

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMA 144
           +    ++    +V +D+  + PI GV     D         +++    G   D+V+ D A
Sbjct: 143 KYMPMSST---IVGVDLAPIRPIRGVTTLVEDITTQSCRAALKRVTPQGLKYDVVIHDGA 199

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G+   +     +L   +   A E L  GG F+ K F+    + +L   ++ F+KV 
Sbjct: 200 PNVGGNFAKESYTQAALTLDSLRLATEFLGPGGWFVTKVFRSVEYHALLYAFQQLFKKVE 259

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KPVASR  S E++++  G+
Sbjct: 260 STKPVASRGTSAEIYVVCSGY 280


>gi|216264466|ref|ZP_03436458.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 156a]
 gi|221217749|ref|ZP_03589217.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 72a]
 gi|215980939|gb|EEC21746.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 156a]
 gi|221192426|gb|EEE18645.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 72a]
          Length = 192

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 13/199 (6%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   RLDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
                +V++DI D    +G+++   F F   D+ S + + +     P  LV+SD+A  T 
Sbjct: 58  LKRGILVSVDIND----IGLRYDDNFYFIKGDIFSDDTVFKINTFKPYSLVISDVAPKTT 113

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+R +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRP 173

Query: 209 VASRAESVEMFLLAKGFRK 227
            A R  S E++ L K F K
Sbjct: 174 KAVRKNSFEIYFLGKSFGK 192


>gi|225552371|ref|ZP_03773311.1| ribosomal RNA large subunit methyltransferase J [Borrelia sp. SV1]
 gi|225371369|gb|EEH00799.1| ribosomal RNA large subunit methyltransferase J [Borrelia sp. SV1]
          Length = 192

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 13/199 (6%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   RLDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
                +V++DI D    +G+++   F F   D+ S + + +     P  LV+SD+A  T 
Sbjct: 58  LKRGILVSVDIND----IGLRYDDNFYFIKGDIFSDDTVFKINTFRPYSLVISDVAPKTT 113

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+R +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRP 173

Query: 209 VASRAESVEMFLLAKGFRK 227
            A R  S E++ L K F K
Sbjct: 174 KAVRKNSFEIYFLGKSFGK 192


>gi|46126149|ref|XP_387628.1| hypothetical protein FG07452.1 [Gibberella zeae PH-1]
          Length = 839

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 102/192 (53%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ +R ++DL ++PGSW QVAA +       
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSRVLIDLCAAPGSWLQVAAEVM---PQG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR-KID 154
           + +V  D+  ++PI  V  F+ D    D    +++ +  +    +     P +G     D
Sbjct: 70  SLIVGCDLSPIKPIPRVTSFQSDITSEDCRATLKRLLLSHKACTVIHDGAPNVGTAWTQD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L   +   A E +   G F+ K F+    N +L + K+ F KV   KP +SR  
Sbjct: 130 AFDQNALVLQSLKLATEFMKPDGTFVTKVFRSKDYNSLLWVFKQLFNKVEATKPSSSRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+F++ +G++
Sbjct: 190 SSEIFVVCRGYK 201


>gi|223997678|ref|XP_002288512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975620|gb|EED93948.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 208

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 6/188 (3%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A+ +G+R+R+A+KL QIN K  IL++ + I+DL ++PG W+QV AR   +N++ T ++A+
Sbjct: 5   AKEQGFRSRAAFKLTQINRKFNILKNAQTIIDLCAAPGGWTQVCARSLPNNSSTT-ILAV 63

Query: 102 DILDMEPILGVKFFKF--DFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIG-HRKIDHLR 157
           DIL +  +          D         IR  + G   D+VL D A P +G     D   
Sbjct: 64  DILPIRNLNSKNVITLIGDITTEKCKAAIRSEMQGAGADVVLCDGA-PNVGASYDRDAYM 122

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L   A   A E L   G F+ K ++    +  L + K+ F  V  VKP ASR++S E
Sbjct: 123 QNELALHALKCACEHLRKKGTFVTKLYRSSDYSAYLWVAKQFFHTVQAVKPSASRSQSAE 182

Query: 218 MFLLAKGF 225
           +FL+ +G+
Sbjct: 183 IFLVCEGY 190


>gi|19074557|ref|NP_586063.1| rRNA METHYL-TRANSFERASE [Encephalitozoon cuniculi GB-M1]
 gi|19069199|emb|CAD25667.1| rRNA METHYL-TRANSFERASE [Encephalitozoon cuniculi GB-M1]
          Length = 573

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KLLQ+N K+  L+    ++DL ++PGSWSQVAA+        
Sbjct: 36  DKYYSLAKEKGYRARSAFKLLQMNRKYGFLEDAHVLIDLCAAPGSWSQVAAQ---EMPLR 92

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHR-KI 153
            ++VAID+  ++ I  V     D    +    +R+ +G +  D+VL D A P +G   + 
Sbjct: 93  RKIVAIDLEPIKFIGDVDTIVEDITTDECRLKLREILGTHKADVVLHDGA-PNVGTSWEN 151

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+      +L +L + F  V   KP++SR+
Sbjct: 152 DAFNQNLLVLHSARLAAEFLRKGGVFVTKVFRSQDYFSLLNVLSQLFGSVETSKPLSSRS 211

Query: 214 ESVEMFLLAKGF 225
           +S E+FL+  GF
Sbjct: 212 QSAEIFLVCLGF 223


>gi|315044531|ref|XP_003171641.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma gypseum
           CBS 118893]
 gi|311343984|gb|EFR03187.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma gypseum
           CBS 118893]
          Length = 812

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++ I  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 70  SLIVGVDLSPIKAIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|90085359|dbj|BAE91420.1| unnamed protein product [Macaca fascicularis]
          Length = 198

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLD 123
           R++D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  
Sbjct: 27  RVLDCGAAPGAWSQVAVQKVNAAGTDPSSPIGFVLGVDLLHIFPLEGATFLCPADVTDPR 86

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + I + + GG  D++LSDMA    G R +DH R +SLC        ++L   G FL K
Sbjct: 87  TSQRILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCK 146

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           T+ G  ++ +   L + FQ V  +KP ASR ES E++ LA  ++
Sbjct: 147 TWAGSQSHRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQ 190


>gi|312149324|gb|ADQ29395.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi N40]
          Length = 189

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 13/198 (6%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 1   MDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----KL 55

Query: 94  NNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
               +V++DI D    +G+++   F F   D+ S + + +     P  LV+SD+A  T G
Sbjct: 56  KRGILVSVDIND----IGLRYDDNFYFIKGDIFSDDTVFKINTFKPYSLVISDVAPKTTG 111

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P 
Sbjct: 112 NRLVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPK 171

Query: 210 ASRAESVEMFLLAKGFRK 227
           A R  S E++ L K F K
Sbjct: 172 AVRKNSFEIYFLGKSFGK 189


>gi|296809876|ref|XP_002845276.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma otae CBS
           113480]
 gi|238842664|gb|EEQ32326.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma otae CBS
           113480]
          Length = 804

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++ I  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 70  SLIVGVDLSPIKAIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 129 DAFSQAELVLQSLKLATEFLIPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 189 VSAEIFVVCLGFK 201


>gi|295658670|ref|XP_002789895.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Paracoccidioides
           brasiliensis Pb01]
 gi|226282856|gb|EEH38422.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Paracoccidioides
           brasiliensis Pb01]
          Length = 395

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 112/267 (41%), Gaps = 77/267 (28%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA------------------------------------------NNTRVVAID 102
                G  A                                           N ++VAID
Sbjct: 70  KGESFGRRAWEEKRRRECSEEPKLENAKRDEHKWEAEGEEGKEEEQVLKPRKNVKIVAID 129

Query: 103 ILDMEPILGVKFFKFDF------------LDLDSWEF---------IRQAIGGNP---DL 138
           +  M P+ G+   K D             LD D +            R     +P   DL
Sbjct: 130 LQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYAVTSDLTTSTTTRNMPHHHPHPVDL 189

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK 
Sbjct: 190 VLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLKT 249

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F++V   KP +SRA S+E F++ +GF
Sbjct: 250 VFERVSVAKPRSSRASSLEAFVVCEGF 276


>gi|259487095|tpe|CBF85494.1| TPA: tRNA methyltransferase, putative (AFU_orthologue;
           AFUA_6G08910) [Aspergillus nidulans FGSC A4]
          Length = 420

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 112/255 (43%), Gaps = 65/255 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           D Y + A+ + WRARSA+KL+QI+E+     H+  +   R+VDL ++PGSWSQV +R   
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 88  ------------------------------------ITGSNA----NNTRVVAIDILDME 107
                                               IT S A     N ++V+ID+  M 
Sbjct: 70  KGESFGRRSWVEKRRKEQAALENLDGDAPAANQGADITDSTALKPRKNVKIVSIDLQPMA 129

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAI--------GGNP---------DLVLSDMAYPTIGH 150
           P+ G+   + D     +   + QA+           P         DLV+SD A    G 
Sbjct: 130 PLQGITTLQADITHPSTIPLLLQALDPEAYDSTSSTPHAVRQPHPVDLVISDGAPDVTGL 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  +A   AL +L  GG F+ K F+    + +   L+  F++V   KP +
Sbjct: 190 HDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRDRDVDLLYSQLRTVFERVSVAKPRS 249

Query: 211 SRAESVEMFLLAKGF 225
           SRA S+E F++ +GF
Sbjct: 250 SRASSLEAFIVCEGF 264


>gi|67522589|ref|XP_659355.1| hypothetical protein AN1751.2 [Aspergillus nidulans FGSC A4]
 gi|40744881|gb|EAA64037.1| hypothetical protein AN1751.2 [Aspergillus nidulans FGSC A4]
          Length = 420

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 112/255 (43%), Gaps = 65/255 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           D Y + A+ + WRARSA+KL+QI+E+     H+  +   R+VDL ++PGSWSQV +R   
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 88  ------------------------------------ITGSNA----NNTRVVAIDILDME 107
                                               IT S A     N ++V+ID+  M 
Sbjct: 70  KGESFGRRSWVEKRRKEQAALENLDGDAPAANQGADITDSTALKPRKNVKIVSIDLQPMA 129

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAI--------GGNP---------DLVLSDMAYPTIGH 150
           P+ G+   + D     +   + QA+           P         DLV+SD A    G 
Sbjct: 130 PLQGITTLQADITHPSTIPLLLQALDPEAYDSTSSTPHAVRQPHPVDLVISDGAPDVTGL 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  +A   AL +L  GG F+ K F+    + +   L+  F++V   KP +
Sbjct: 190 HDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRDRDVDLLYSQLRTVFERVSVAKPRS 249

Query: 211 SRAESVEMFLLAKGF 225
           SRA S+E F++ +GF
Sbjct: 250 SRASSLEAFIVCEGF 264


>gi|303390043|ref|XP_003073253.1| 23S rRNA methyl-transferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302398|gb|ADM11893.1| 23S rRNA methyl-transferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 550

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KLLQIN K+  L+    ++DL ++PGSW QVAA+        
Sbjct: 13  DKYYNLAKEKGYRARSAFKLLQINRKYAFLEKAHVLIDLCAAPGSWCQVAAQ---EMPLR 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHR-KI 153
            ++VA+D+  ++ +  V     D    +    +R+ +G +  D+VL D A P +G   + 
Sbjct: 70  RKIVAVDLEPIKFMGDVDTITADITSDECRLRLREILGTHKADVVLHDGA-PNVGTSWEN 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +     E L  GG F+ K F+      +L +L + F+ V   KP++SR+
Sbjct: 129 DAFNQNLLVLHSARLTAEFLKKGGVFVTKVFRSQDYFSLLNILSQLFETVETSKPLSSRS 188

Query: 214 ESVEMFLLAKGF 225
           +S E+FL+  GF
Sbjct: 189 QSAEIFLVCLGF 200


>gi|195432683|ref|XP_002064346.1| GK19748 [Drosophila willistoni]
 gi|194160431|gb|EDW75332.1| GK19748 [Drosophila willistoni]
          Length = 824

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A     + L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLFDAYQQICLTLNALKLGTQFLRSGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|170574558|ref|XP_001892866.1| rRNA methyltransferase [Brugia malayi]
 gi|158601360|gb|EDP38288.1| rRNA methyltransferase, putative [Brugia malayi]
          Length = 789

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 107/194 (55%), Gaps = 6/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+R+R+A+KLLQ+N++ + LQ +R +VDL ++PG W QVA +   +   +
Sbjct: 13  DKYYHLAKEAGYRSRAAFKLLQLNKRFEFLQKSRAVVDLCAAPGGWLQVAIQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           +  + +D++ ++PI      + D     + + +R+ + G   D VL D A P +G   + 
Sbjct: 70  SICIGVDLVPIKPINKCVTLQGDITTEKTRQMVRKELHGWEADCVLHDGA-PNVGRNWVQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L  +A   A ++L   G F+ K F+      ++ + +K F++V   KP ASR 
Sbjct: 129 DAFQQNCLTLSALRLATQILTKNGIFVTKIFRSSDYCHLISVFEKLFKQVHVWKPAASRL 188

Query: 214 ESVEMFLLAKGFRK 227
           ES E+F++ + + K
Sbjct: 189 ESAEIFVVCEKYLK 202


>gi|294947674|ref|XP_002785437.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239899348|gb|EER17233.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 224

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 2/161 (1%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           N+R+VDLG   G WSQVA + T    +N+ VV +D + M+ +    F + D  +  + + 
Sbjct: 36  NQRVVDLGCYSGGWSQVALKRTRVGESNSMVVGVDKVRMDALQMHTFVQGDITEPSTIDA 95

Query: 128 IRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +++A+G N    ++LSDMA    G R  DHL    L          +L + G  ++KTF 
Sbjct: 96  VKRALGENKKAHVLLSDMAPNVTGRRADDHLEITELNIKTIDVMESVLGLKGWLVMKTFY 155

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G  T  +   L+  F KV   +P A+R ES E++L+A G+R
Sbjct: 156 GPETQKLRTFLESRFYKVRACRPHATRPESREVYLIASGYR 196


>gi|146087128|ref|XP_001465733.1| ribosomal RNA methyltransferase-like protein [Leishmania infantum
           JPCM5]
 gi|134069833|emb|CAM68159.1| ribosomal RNA methyltransferase-like protein [Leishmania infantum
           JPCM5]
 gi|322499182|emb|CBZ34253.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 285

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 31/227 (13%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGS 80
           QG+SR W+ R   DP+V +A+ +G+ ARSAYKL  I+++  +   Q  R  +DLG SPG 
Sbjct: 9   QGASRQWMQRQSQDPFVAKARQDGYVARSAYKLTHIDDRFHLFDRQHTRIAIDLGCSPGG 68

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIG------ 133
           W QV   I     +   ++ ID+L ++  I      + DF D+ + E + + +       
Sbjct: 69  WCQV---IRERAGDRCFLLGIDLLPIKAQIPNAVIVQGDFTDVTTQEKLVKCLAHHSATL 125

Query: 134 ---------GNP--------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                     +P        D+V SDM    +G  + D  R   L   A      +L IG
Sbjct: 126 GRGDATTAVASPSSSCFTKVDVVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRIG 184

Query: 177 GDFLVKTFQG-GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           G F+ K         ++ C L + F  V   KP ASR  S E FL+A
Sbjct: 185 GHFVCKVLGSRAAYEELWCRLSRLFLTVHACKPPASRMHSDEAFLVA 231


>gi|121699614|ref|XP_001268080.1| tRNA methyltransferase, putative [Aspergillus clavatus NRRL 1]
 gi|119396222|gb|EAW06654.1| tRNA methyltransferase, putative [Aspergillus clavatus NRRL 1]
          Length = 428

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 67/257 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H+  +   R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA---------------------------------------NNTRVVAIDILD 105
                G  A                                        N ++V+ID+  
Sbjct: 70  KGESFGRRAWIEKKRKEREALRRIDNAVEGQETVPEEEMEGTAELKPRKNVKIVSIDLQP 129

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAI------GGNP-----------DLVLSDMAYPTI 148
           M P+ G+   + D     +   + +A+        +P           DLV+SD A    
Sbjct: 130 MAPLEGITTLQADITHPSTIPLLLRALDPEAYNSADPSPSELQQPHPVDLVISDGAPDVT 189

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  +A   AL +L  GG F+ K F+G   + +   L+  F+KV   KP
Sbjct: 190 GLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRGRDVDLLYAQLRTVFEKVSVAKP 249

Query: 209 VASRAESVEMFLLAKGF 225
            +SRA S+E F++ +GF
Sbjct: 250 RSSRASSLEAFVVCEGF 266


>gi|134057568|emb|CAK37978.1| unnamed protein product [Aspergillus niger]
          Length = 230

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 46/190 (24%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS+ W  R + D + + A ++G ++R+A+KLLQI+EK+ I +S + +VDLG +PGSWSQV
Sbjct: 29  SSKRWQARQLKDRFTREAAVQGLKSRAAFKLLQIDEKYHIFESGQTVVDLGYAPGSWSQV 88

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD--LDSW--EFIRQAIGGNP---- 136
           A   T  +    RV+ +DI+  +P  GV   + +FLD  + ++  EF+R A  G P    
Sbjct: 89  AVARTQPHG---RVLGVDIIPAQPPKGVSTIQGNFLDPNIQAYVREFVRDANRGRPHPPS 145

Query: 137 -----------------------------------DLVLSDMAYPTIGHRKIDHLRTMSL 161
                                              D+VLSDM   T G    DH  +M  
Sbjct: 146 TILDAEYDDTQLKSDANASSDKQTDPKQWDRNYSVDVVLSDMMMNTSGISFKDHAGSMLC 205

Query: 162 CEAATFFALE 171
             A  F ALE
Sbjct: 206 SSAKKFSALE 215


>gi|325180137|emb|CCA14539.1| ribosomal RNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 264

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 14/205 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS---- 91
           D Y +RA+   +RARSA+KLLQ++++  +    +R VDL ++PGSWSQV +R   S    
Sbjct: 12  DVYYRRAKELKFRARSAFKLLQLDDQFDLFNDVQRAVDLCAAPGSWSQVLSRKLYSEREL 71

Query: 92  ---------NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLS 141
                    +  + ++V++D+ +  PI GVK  + D     +  E  R   G    +V+ 
Sbjct: 72  LDLKQRNDEDNESLKIVSVDLQETAPIPGVKLIQGDITSEKTVAEIARHFRGRKAQIVVC 131

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA   +  +L  GG F+ K F       +       F 
Sbjct: 132 DGAPDVTGMHDVDEFLQAELLHAALNVSAHVLEEGGTFVAKIFHCKQYELLASQFALFFA 191

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP +SR +S E F++ + FR
Sbjct: 192 NVSRSKPESSRVQSNEAFIIGQQFR 216


>gi|308159656|gb|EFO62181.1| FtsJ cell division protein, putative [Giardia lamblia P15]
          Length = 1084

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 6/194 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + ++  D Y + A+  G+R+R+AYKL+Q++ ++  L S + ++DL ++PGSWSQVAA   
Sbjct: 8   IGKNRKDEYYRLAREAGYRSRAAYKLIQLDAQYGFLSSTKCLIDLCAAPGSWSQVAAMKM 67

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                 + +V++D+  ++PI GV  F  D         + + + G   D V+ D A P +
Sbjct: 68  PV---GSLIVSVDLDPIKPINGVVSFCSDITTAACRNALTEKLKGWAVDTVIHDGA-PNM 123

Query: 149 GHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G    +D     +L  AA   A E L + G F+ K F+    + +L +L++ F+KV   K
Sbjct: 124 GTAWGVDAFGQNTLVLAACKLATEFLRMHGTFITKIFRSADHDALLYVLRQLFEKVEITK 183

Query: 208 PVASRAESVEMFLL 221
           P ASR  S E F +
Sbjct: 184 PRASRDNSSECFAV 197


>gi|15029842|gb|AAH11144.1| Ftsj1 protein [Mus musculus]
          Length = 308

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+  +L+S +R V + ++P  +  V  +  G + + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFSLLESVKRAVAVCAAPFFFFFVRLQKAGGHGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKID 154
            +VVA+D+  M P  GV   + D   L + + I Q   G P L       P + G   +D
Sbjct: 70  -QVVAVDLQAMAPQPGVIQIQGDITQLSTAKEIIQHFEGCPALFAVCEGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFPSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAKGF 225
           S+E F + +G+
Sbjct: 189 SIEAFAVCQGY 199


>gi|19114041|ref|NP_593129.1| rRNA methyltransferase Spb1 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|9910811|sp|O42832|SPB1_SCHPO RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|4106665|emb|CAA22605.1| rRNA methyltransferase Spb1 (predicted) [Schizosaccharomyces pombe]
          Length = 802

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+R+R+A+KL+Q+N+K+  L+  + I+DL ++PG W QVA++        
Sbjct: 14  DKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKTCKP---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI     F  D         +R  +     D+VL D A P +G   + 
Sbjct: 71  SLIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGA-PNVGSAWLQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N++L + K+ F KV   KP +SR 
Sbjct: 130 DAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 190 VSAEIFVVCRGYK 202


>gi|195133724|ref|XP_002011289.1| GI16447 [Drosophila mojavensis]
 gi|193907264|gb|EDW06131.1| GI16447 [Drosophila mojavensis]
          Length = 826

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A     + L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLYDAYQQICLTLNALKLGTQFLRGGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|110760837|ref|XP_391900.3| PREDICTED: putative rRNA methyltransferase 3-like isoform 2 [Apis
           mellifera]
          Length = 817

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 6/196 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D + Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYQLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ V+ +D+  ++PI G +   +    D       R+      D+VL D A P +
Sbjct: 65  -NMPVSSIVIGVDLFPIKPIPGCISLIEDITTDKCRVSITRELKTWKADVVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  + + L  +A   A   L  GG F+ K F+    + ++ +LK+ F+KV   K
Sbjct: 123 GKNWLHDAYQQIVLTLSALKMATHFLRSGGWFITKVFRSKDYHPLIWVLKQLFKKVHATK 182

Query: 208 PVASRAESVEMFLLAK 223
           P ASR ES E+F++ +
Sbjct: 183 PQASRTESAEIFVVCQ 198


>gi|71987550|ref|NP_497656.2| hypothetical protein H06I04.3 [Caenorhabditis elegans]
 gi|60543537|gb|AAX22286.1| Hypothetical protein H06I04.3b [Caenorhabditis elegans]
          Length = 716

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A P +
Sbjct: 67  PV---SSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVI 204
           G   + D  +   L  +A   A ++L  GG F+ K F+   +ND  CL++   K F++V 
Sbjct: 123 GLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFR---SNDYSCLIRVFEKLFKRVH 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR ES E+F++ + ++K
Sbjct: 180 VWKPAASRLESAEIFVVCEVYQK 202


>gi|159115593|ref|XP_001708019.1| FtsJ cell division protein, putative [Giardia lamblia ATCC 50803]
 gi|157436128|gb|EDO80345.1| FtsJ cell division protein, putative [Giardia lamblia ATCC 50803]
          Length = 1084

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 6/188 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+R+R+AYKL+Q++ ++  L S + ++DL ++PGSWSQVAA         
Sbjct: 14  DEYYRLAREAGYRSRAAYKLIQLDAQYGFLSSTKCLIDLCAAPGSWSQVAAMKMPV---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + +V++D+  ++PI GV  F  D         + + + G   D V+ D A P +G    +
Sbjct: 71  SLIVSVDLDPIKPINGVVSFCSDITTAACRNALTEKLKGWAVDTVIHDGA-PNMGTAWGV 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     +L  AA   A E L + G F+ K F+    + +L +L++ F+KV   KP ASR 
Sbjct: 130 DAFGQNTLVLAACKLATEFLRMHGTFITKIFRSADHDALLYVLRQLFEKVEITKPRASRD 189

Query: 214 ESVEMFLL 221
            S E F +
Sbjct: 190 NSSECFAV 197


>gi|328784537|ref|XP_003250462.1| PREDICTED: putative rRNA methyltransferase 3-like isoform 1 [Apis
           mellifera]
          Length = 844

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 6/196 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D + Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYQLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ V+ +D+  ++PI G +   +    D       R+      D+VL D A P +
Sbjct: 65  -NMPVSSIVIGVDLFPIKPIPGCISLIEDITTDKCRVSITRELKTWKADVVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  + + L  +A   A   L  GG F+ K F+    + ++ +LK+ F+KV   K
Sbjct: 123 GKNWLHDAYQQIVLTLSALKMATHFLRSGGWFITKVFRSKDYHPLIWVLKQLFKKVHATK 182

Query: 208 PVASRAESVEMFLLAK 223
           P ASR ES E+F++ +
Sbjct: 183 PQASRTESAEIFVVCQ 198


>gi|303286059|ref|XP_003062319.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455836|gb|EEH53138.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 231

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 33/224 (14%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y + A+  G+ ARSA+KLL+++++  IL+    ++DLG  PG+W+QVA R  G   
Sbjct: 10  LTDFYAKEAKRLGYVARSAFKLLELSDRFGILRKGAHVLDLGCHPGAWTQVACRALGHPD 69

Query: 94  NNTRVVAIDILDMEPILGV-----KFFKFDFLDLDSW----------------------E 126
               V+ +D+ + E  LG      +  +F   D  +                       E
Sbjct: 70  EGGGVLGVDLRETE--LGTLRHVDRRARFAVADATTLCEKRLRALRGGDGDGDGDGDGDE 127

Query: 127 FIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL-EMLNIGGDFLVKTF 184
            I       P  +VLSDMA  T G   +D  R+  L EAA   AL E    GG  +VK  
Sbjct: 128 SIATRRRTRPFTVVLSDMAPSTTGAADVDAARSYELAEAAVRIALGERALDGGSLVVKLL 187

Query: 185 Q--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG   D+  +  + F +V   +P A+R +S E+FL+A+G R
Sbjct: 188 EGPGGGKADLQAVCARAFDRVRWYRPRATRRDSSEVFLVARGRR 231


>gi|15594658|ref|NP_212447.1| cell division protein (ftsJ) [Borrelia burgdorferi B31]
 gi|218249912|ref|YP_002374835.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi ZS7]
 gi|223889029|ref|ZP_03623620.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 64b]
 gi|224533189|ref|ZP_03673789.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi WI91-23]
 gi|224533742|ref|ZP_03674330.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi CA-11.2a]
 gi|225549132|ref|ZP_03770107.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 94a]
 gi|225550187|ref|ZP_03771147.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 118a]
 gi|226320614|ref|ZP_03796174.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 29805]
 gi|226321630|ref|ZP_03797156.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi Bol26]
 gi|9910941|sp|O51293|RLME_BORBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809547|sp|B7J1P0|RLME_BORBZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2688216|gb|AAC66697.1| cell division protein (ftsJ) [Borrelia burgdorferi B31]
 gi|218165100|gb|ACK75161.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi ZS7]
 gi|223885845|gb|EEF56944.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 64b]
 gi|224511916|gb|EEF82317.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi WI91-23]
 gi|224513035|gb|EEF83398.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi CA-11.2a]
 gi|225369299|gb|EEG98752.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 118a]
 gi|225370358|gb|EEG99796.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 94a]
 gi|226232819|gb|EEH31572.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi Bol26]
 gi|226234033|gb|EEH32754.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 29805]
          Length = 192

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 27/206 (13%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   RLDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-----------DLVLS 141
                +V++DI D+         ++D    D++ FI+  I  +             LV+S
Sbjct: 58  LKRGILVSVDINDIG-------LRYD----DNFYFIKGDIFLDDTVFKINTFKPYSLVIS 106

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D+A  T G+R +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+
Sbjct: 107 DVAPKTTGNRLVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFK 166

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
            V  ++P A R  S E++ L K F K
Sbjct: 167 FVKKIRPKAVRKNSFEIYFLGKSFGK 192


>gi|75400150|sp|Q8KTR0|RLME_TREPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|21702591|gb|AAM75988.1|AF481102_24 cell division protein [Candidatus Tremblaya princeps]
          Length = 202

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 1/201 (0%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G + +W  RH+ D +V+ ++  G+RAR+A KL +++ K+ ++     +++LGSSPG WSQ
Sbjct: 2   GRTSEWYARHVGDSFVRTSKAWGYRARAACKLKRLDAKYGLMSRQCDVLELGSSPGVWSQ 61

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
             +     +    R V++D   M  + GV F   D  + ++   +   +     L+LSD+
Sbjct: 62  YISYERRVSGMAWRTVSVDTRAMVRVRGVSFIHGDITEAETMAEVSSRLPSGVGLILSDI 121

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
                  R +D + T  + E     +   L  GG  L KTF       I  ++++HF  V
Sbjct: 122 CPHPSCERYLDSIATAKVAETLLMVSRRFLLDGGALLHKTFV-IRAEHIASVMERHFSSV 180

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              +  +SR+ + E +LL  G
Sbjct: 181 EVYRDASSRSFNSEAYLLCVG 201


>gi|213402435|ref|XP_002171990.1| AdoMet-dependent rRNA methyltransferase spb1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000037|gb|EEB05697.1| AdoMet-dependent rRNA methyltransferase spb1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 795

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+R+R+A+KL+Q+N+K+  L+  R ++DL ++PG W QVA++        
Sbjct: 14  DKWYKLAKEQGYRSRAAFKLVQLNKKYNFLEKARVVIDLCAAPGGWLQVASKTCKP---G 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  ++PI     F  D         +R  +     D+V+ D A P +G   + 
Sbjct: 71  SLIVGVDLAPIKPIPNCITFVEDITSDRCRSQLRGYLKTWKADVVVHDGA-PNVGAAWLQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A E L  GG F+ K F+    N+++ + K+ F KV   KP +SR 
Sbjct: 130 DAYGQAELVLMAMKLACEFLGPGGTFVTKVFRSKDYNNLIWVFKQLFNKVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +G++
Sbjct: 190 VSAEIFVVCRGYK 202


>gi|309355312|emb|CAP39049.2| hypothetical protein CBG_22467 [Caenorhabditis briggsae AF16]
          Length = 856

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A P +
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVI 204
           G   + D  +   L  +A   A ++L  GG F+ K F+   +ND  CL++   K F++V 
Sbjct: 123 GLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFR---SNDYSCLIRVFEKLFKRVH 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR ES E+F++ + ++K
Sbjct: 180 VWKPAASRLESAEIFVVCEVYQK 202


>gi|268571471|ref|XP_002641056.1| Hypothetical protein CBG22467 [Caenorhabditis briggsae]
          Length = 827

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A P +
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVI 204
           G   + D  +   L  +A   A ++L  GG F+ K F+   +ND  CL++   K F++V 
Sbjct: 123 GLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFR---SNDYSCLIRVFEKLFKRVH 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR ES E+F++ + ++K
Sbjct: 180 VWKPAASRLESAEIFVVCEVYQK 202


>gi|71029650|ref|XP_764468.1| rRNA methyltransferase [Theileria parva strain Muguga]
 gi|68351422|gb|EAN32185.1| rRNA methyltransferase, putative [Theileria parva]
          Length = 924

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+R+RSA+K++Q+ +K  I Q+   +VDL ++PG W QVA+     ++  
Sbjct: 13  DKYYHLAKEHGYRSRSAFKIIQLAKKFNIFQNCNVLVDLCAAPGGWLQVASNQLPVSST- 71

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
             ++ +D++ ++PI GV  F+ D         I   + G + D+VL D   P +G    +
Sbjct: 72  --IIGVDLVPIKPIKGVITFQADIRTPKCHSLITNQLNGLSVDVVLHD-GSPNMGCNWNL 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A  +L  GG F+ K F+    N ++ +L   F++V   KP +SR 
Sbjct: 129 DAFNQNVLVLTAAKLACSLLRKGGIFVTKVFRSSDYNSLVWMLGNCFERVKVTKPQSSRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F +  GF+
Sbjct: 189 VSAEIFAVCIGFK 201


>gi|153217144|ref|ZP_01950908.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           1587]
 gi|124113837|gb|EAY32657.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           1587]
          Length = 162

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 18/138 (13%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG++PG WSQ
Sbjct: 8   ASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDL--- 138
            AA++ G      RV+A D+L ME I GV F + DF +    E +  A+     PD+   
Sbjct: 68  FAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFRE----EAVLNALLDRIQPDMVDV 120

Query: 139 VLSDMAY------PTIGH 150
           V+SDMA       P+I H
Sbjct: 121 VMSDMALIWRVTCPSISH 138


>gi|302895811|ref|XP_003046786.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727713|gb|EEU41073.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 373

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 58/249 (23%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------ 89
           D Y + A+ +GWRARSA+KLLQ++E+  +  +  R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFDLFSNVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 90  GSNA---------------------------------------NNTRVVAIDILDMEPIL 110
           G  A                                       ++ ++V+ID+  + P+ 
Sbjct: 70  GRAAWQDKEAKFRQQMLGILPKDDEAIITEQDGEKQEEALKPRDDVKIVSIDLQPISPLA 129

Query: 111 GVKFFKFDFLDLDSWEFIRQAI--------GGNP-----DLVLSDMAYPTIGHRKIDHLR 157
           G+   + D     +   +  A+         GN      DLVLSD A    G   +D   
Sbjct: 130 GITTLRADITHPATVPLLLSALDPSYDAKTAGNQASHPVDLVLSDGAPDVTGLHDLDIYV 189

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SRA SVE
Sbjct: 190 QSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKIFFEKVIVAKPRSSRASSVE 249

Query: 218 MFLLAKGFR 226
            F++   F+
Sbjct: 250 AFIVCINFQ 258


>gi|256079102|ref|XP_002575829.1| ribosomal RNA methyltransferase [Schistosoma mansoni]
 gi|238661080|emb|CAZ32064.1| ribosomal RNA methyltransferase, putative [Schistosoma mansoni]
          Length = 885

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A+  G+R+R+A+KL+Q+N + + L S++ ++DL ++PG W QVAA+        + ++ +
Sbjct: 19  AKETGFRSRAAFKLIQLNRRFKFLNSSKVLIDLCAAPGGWLQVAAK---EMPMTSHIIGV 75

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KIDHLRTM 159
           D++ + PI  VK F  D       + +R  +     D+VL D A P +G    ID     
Sbjct: 76  DLVPIHPIPKVKTFVADITTDKCKQILRSELNDLKADVVLHDGA-PNVGAAWSIDEYTQA 134

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L   +   A E L  GG F+ K F+      +  +L + F+ V  +KP ASR ES E+F
Sbjct: 135 VLSLNSFAIATEFLRRGGWFVTKVFRSRDYEPLKWVLSQFFRTVRAIKPEASRLESAEIF 194

Query: 220 LLAKGF 225
           L+ + +
Sbjct: 195 LVGQNY 200


>gi|255932265|ref|XP_002557689.1| Pc12g08590 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582308|emb|CAP80486.1| Pc12g08590 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 435

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 80/267 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H+   +  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDERFDLFEHENPDNVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA---------------------------------------NNTRVVAIDILD 105
                G  A                                        N ++V+ID+  
Sbjct: 70  KGESFGRRAWLEKKRKELKGLEAAETATADGDKMDCDEVSSSSELKPRKNVKIVSIDLQP 129

Query: 106 MEPILGVKFFKFDF------------LDLDSWE--------------FIRQAIGGNP-DL 138
           M P+ G+   K D             LD +++E               IRQ    +P DL
Sbjct: 130 MAPLEGITTLKADITHPSTIPLLLRALDPEAYEQPSTPSESPSPATEAIRQP---HPVDL 186

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + +   L+ 
Sbjct: 187 VISDGAPDVTGLHDLDIYIQSQLLYAALNLAMGVLRPGGKFVAKIFRGRDVDLLYAQLRT 246

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F++V   KP +SRA S+E F++ +GF
Sbjct: 247 VFERVSVAKPRSSRASSLEAFVVCEGF 273


>gi|71987561|ref|NP_001022635.1| hypothetical protein H06I04.3 [Caenorhabditis elegans]
 gi|60543538|gb|AAX22287.1| Hypothetical protein H06I04.3c [Caenorhabditis elegans]
          Length = 786

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A P +
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVI 204
           G   + D  +   L  +A   A ++L  GG F+ K F+   +ND  CL++   K F++V 
Sbjct: 123 GLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFR---SNDYSCLIRVFEKLFKRVH 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR ES E+F++ + ++K
Sbjct: 180 VWKPAASRLESAEIFVVCEVYQK 202


>gi|167044324|gb|ABZ09003.1| putative FtsJ-like methyltransferase [uncultured marine
           crenarchaeote HF4000_APKG6B14]
          Length = 197

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A +EG+R+RS+YKL ++++ ++I+     ++DLG +PG W+QVA ++ G   N 
Sbjct: 9   DHYRKLASVEGYRSRSSYKLKELHKSYRIIGVGHYVLDLGCAPGGWTQVAVQLAG---NK 65

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            +V+ +D   +E I G    K D  D    + I    G   ++V+ D++    G+  +DH
Sbjct: 66  GKVMGVDTSYVEEIPGAYMLKSDICDGSVTKEILSFFGKKVNVVICDLSPQVTGNWSVDH 125

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
              +S   AA     ++L   G+ L K F G  +N+    +KK F KV   KP  SR +S
Sbjct: 126 STQISSNYAAAKIMDQVLKKNGNALFKVFDGEYSNEFYQYVKKKFFKVKLKKPKVSRKQS 185

Query: 216 VEMFLLAKGF 225
            E++ +  G+
Sbjct: 186 SELYCICLGY 195


>gi|195941333|ref|ZP_03086715.1| cell division protein (ftsJ) [Borrelia burgdorferi 80a]
 gi|312148291|gb|ADQ30950.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi JD1]
          Length = 189

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 27/205 (13%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 1   MDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSGN-VLDIGASPGSFSQYAYK----KL 55

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-----------DLVLSD 142
               +V++DI D+         ++D    D++ FI+  I  +             LV+SD
Sbjct: 56  KRGILVSVDINDIG-------LRYD----DNFYFIKGDIFLDDTVFKINTFKPYSLVISD 104

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           +A  T G+R +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ 
Sbjct: 105 VAPKTTGNRLVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKF 164

Query: 203 VIHVKPVASRAESVEMFLLAKGFRK 227
           V  ++P A R  S E++ L K F K
Sbjct: 165 VKKIRPKAVRKNSFEIYFLGKSFGK 189


>gi|310822375|ref|YP_003954733.1| ribosomal RNA large subunit methyltransferase j [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395447|gb|ADO72906.1| Ribosomal RNA large subunit methyltransferase J [Stigmatella
           aurantiaca DW4/3-1]
          Length = 215

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 7/190 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y Q+A+ EG RARSA+K+ +I  +  +++    ++DLG++PG + Q+ A   G +  
Sbjct: 15  KDHYFQKAKQEGLRARSAFKVDEILRRFPVVKKGGVVLDLGAAPGGFLQILADTVGLSG- 73

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF---IRQAIGGNPDLVLSDMAYPTIGHR 151
             RV+ +DI+ + P    K      LD+ + +F   +R    G  D V+SDMA  T G +
Sbjct: 74  --RVIGVDIVAIRP-FPQKHVTTAVLDVLADDFDARLRALYEGPLDAVISDMAPKTSGIK 130

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ L   A   A+E    G  F+ K F GG        ++  + +V  V+P A+
Sbjct: 131 ATDEARSLRLAGKALEVAVERGRPGSSFVAKLFMGGDFEAFRDQVRASYDEVKVVRPEAT 190

Query: 212 RAESVEMFLL 221
           R  S+E++L+
Sbjct: 191 RGASMEVYLV 200


>gi|17553860|ref|NP_497655.1| hypothetical protein H06I04.3 [Caenorhabditis elegans]
 gi|7206709|gb|AAF39868.1| Hypothetical protein H06I04.3a [Caenorhabditis elegans]
          Length = 833

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A P +
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVI 204
           G   + D  +   L  +A   A ++L  GG F+ K F+   +ND  CL++   K F++V 
Sbjct: 123 GLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFR---SNDYSCLIRVFEKLFKRVH 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR ES E+F++ + ++K
Sbjct: 180 VWKPAASRLESAEIFVVCEVYQK 202


>gi|320170532|gb|EFW47431.1| FtsJ cell division protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1045

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+R+A+KL+Q+N K+  L ++R ++DL ++PG W QVA++       +
Sbjct: 13  DKFYKLAKEAGYRSRAAFKLIQLNRKYNFLGTSRVLLDLCAAPGGWLQVASKHMPV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
           + ++ +D + ++PI  V     D         IR+   G   D VL D A P +G     
Sbjct: 70  SVIIGVDRVQIKPIHNVICLTEDITTDKCRAAIRKETKGWKVDCVLHDGA-PNVGTSWTQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     +L   +   A E L  GG ++ K F+    N ++ + ++ F+KV   KP ASR 
Sbjct: 129 DAYTQAALVLMSLKIACEHLGQGGWYITKVFRSADYNALVWVFQQFFKKVHATKPQASRN 188

Query: 214 ESVEMFLLAKGFRK 227
           ES E+F++ +G+ K
Sbjct: 189 ESAEIFVVCQGYNK 202


>gi|149919181|ref|ZP_01907664.1| cell division protein FtsJ [Plesiocystis pacifica SIR-1]
 gi|149819895|gb|EDM79317.1| cell division protein FtsJ [Plesiocystis pacifica SIR-1]
          Length = 209

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 9/201 (4%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
           D  NRH  DP   RA+ E +  R+ YKL +I+++ ++++   R++DLG  PGSW Q A +
Sbjct: 3   DKKNRH--DPNYLRAKRENFAGRAIYKLEEIDKRFRLIKPGARVLDLGCWPGSWLQYAVK 60

Query: 88  ITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
             G++A    +V +D+  +E  L   VK F  D   L   + + +   G  D+VLSDMA 
Sbjct: 61  RAGTDAT---LVGVDLKAVELALPSNVKTFVGDVNKLKLDKMVERF--GRFDVVLSDMAP 115

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G++  D   +  L   A   A     IGG F  K FQG   ++++  +++ +Q+   
Sbjct: 116 NTTGNKDFDIPVSEDLFLRALDIATGCSRIGGHFCAKVFQGARFHELIREVERRYQQAKP 175

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            +   +R +S E +++ +G +
Sbjct: 176 YRSAHTRKQSREQYIIGRGLK 196


>gi|226466768|emb|CAX69519.1| hypothetical protein [Schistosoma japonicum]
          Length = 260

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+  G+R+R+A+KL+Q+N + + L S++ ++DL ++PG W QVAA+       
Sbjct: 12  KDKFYYLAKETGFRSRAAFKLIQLNRRFKFLNSSKVLIDLCAAPGGWLQVAAK---EMPI 68

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-K 152
            ++++ +D++ + PI  VK F  D       + +R  +     D+VL D A P +G    
Sbjct: 69  ASQIIGVDLVPIHPIPKVKTFIADITTDKCKQILRNELNESKADVVLHDGA-PNVGAAWS 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           ID      L   +   A E L  GG F+ K F+         +L + F+ V  +KP ASR
Sbjct: 128 IDEYSQAVLSLNSFAIATEFLRRGGWFVTKVFRSRDYEPFKWVLSQFFRTVRAIKPEASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ + +
Sbjct: 188 LESAEIFIVGQFY 200


>gi|154337806|ref|XP_001565129.1| ribosomal RNA methyltransferase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062176|emb|CAM36564.1| ribosomal RNA methyltransferase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 285

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 31/229 (13%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGS 80
           QG+SR W+ R   DP+V +A+ +G+ ARSAYKL+ ++++  +   Q  R +VDLG SPG 
Sbjct: 9   QGTSRQWMQRQSQDPFVTKARQDGYVARSAYKLIHMDDRFHLFDRQHTRIVVDLGCSPGG 68

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNP--- 136
           W QV   I     +   ++ +D+L ++  I      + DF +  + E + + +  +    
Sbjct: 69  WCQV---IRERAGDRCFLLGVDLLPIKAKIPNAVIVQGDFTEAATEEKLVKRLAHHSATL 125

Query: 137 --------------------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                               D+V SDM    +G  + D  R   L   A      +L  G
Sbjct: 126 GRTDTVTAAAASSASRFTGVDIVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRTG 184

Query: 177 GDFLVKTFQG-GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           G F+ K         ++ CLL + F  V   KP ASR  S E FL+A G
Sbjct: 185 GHFVCKVLGSRAAYEELWCLLSRLFLTVHTCKPPASRMHSDEAFLVALG 233


>gi|119470072|ref|XP_001258008.1| tRNA methyltransferase, putative [Neosartorya fischeri NRRL 181]
 gi|119406160|gb|EAW16111.1| tRNA methyltransferase, putative [Neosartorya fischeri NRRL 181]
          Length = 426

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 115/258 (44%), Gaps = 68/258 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H+  +   R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA---------------------------------------NNTRVVAIDILD 105
                G  A                                        N ++V+ID+  
Sbjct: 70  KGESFGRRAWIEKKRKESEALRRIDHGSESESPAEEEGKDDVAQLKPRRNVKIVSIDLQP 129

Query: 106 MEPILGVKFFKFDF------------LDLDSWEFIRQAIGG-----NP-DLVLSDMAYPT 147
           M P+ G+   + D             LD ++++    +        +P DLV+SD A   
Sbjct: 130 MAPLEGITTLQADITHPSTIPLLLRALDPEAYDSASSSTPSAIQQPHPVDLVISDGAPDV 189

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A   A+ +L  GG F+ K F+G   + I   L+  F+KV   K
Sbjct: 190 TGLHDLDIYVQSQLLYSALNLAVGVLRPGGKFVAKIFRGRDVDLIYAQLRTVFEKVSVAK 249

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SRA S+E F++ +GF
Sbjct: 250 PRSSRASSLEAFVVCEGF 267


>gi|308474701|ref|XP_003099571.1| hypothetical protein CRE_29065 [Caenorhabditis remanei]
 gi|308266583|gb|EFP10536.1| hypothetical protein CRE_29065 [Caenorhabditis remanei]
          Length = 784

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 113/203 (55%), Gaps = 12/203 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A P +
Sbjct: 67  PV---SSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVI 204
           G   + D  +   L  +A   A ++L  GG F+ K F+   +ND  CL++   K F++V 
Sbjct: 123 GLNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFR---SNDYSCLIRVFEKLFKRVH 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP ASR ES E+F++ + + K
Sbjct: 180 VWKPAASRLESAEIFVVCEVYLK 202


>gi|119480445|ref|XP_001260251.1| ribosomal RNA large subunit methyltransferase J, putative
           [Neosartorya fischeri NRRL 181]
 gi|119408405|gb|EAW18354.1| ribosomal RNA large subunit methyltransferase J, putative
           [Neosartorya fischeri NRRL 181]
          Length = 252

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
             SS+ W  R I D + + A ++G ++R+A+KLLQI+EK+ I +S + +VDLG +PGSWS
Sbjct: 27  HSSSKRWQARQIKDHFTRAAAVQGLKSRAAFKLLQIDEKYHIFKSGQTVVDLGYAPGSWS 86

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--DLDSW--EFIRQAIGGNP 136
           QVAA  T  N    RV+ +DI+  +P  GV   + +FL  D+ ++  EF+R    G P
Sbjct: 87  QVAATRTQPNG---RVLGVDIIPAQPPKGVSTIQGNFLTPDIQAYVREFLRDPCRGRP 141


>gi|198424890|ref|XP_002122891.1| PREDICTED: similar to Putative rRNA methyltransferase 3 (rRNA
           (uridine-2-O-)-methyltransferase 3) [Ciona intestinalis]
          Length = 744

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+RARSA+KLLQ+N+K   LQS++  VDL ++PG W QVA+        +
Sbjct: 13  DKYYHLAKETGYRARSAFKLLQLNKKFNFLQSSQACVDLCAAPGGWLQVASE---HMPMS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKID 154
           + +V +D++ + P+     F+ D         +R+ +     D  L D A P +G   + 
Sbjct: 70  SIIVGVDLVPIRPVPKCVTFQDDITKESCRTQLRRELHKWKVDCFLHDGA-PNVGKNWLH 128

Query: 155 HLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
              + S L  AA   A E L  GG F+ K F+      ++ +  + F KV   KP ASR 
Sbjct: 129 DAYSQSVLTLAALKLASEFLCKGGWFITKVFRSKDYQALMWIFGQLFNKVHATKPQASRN 188

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ +GF+
Sbjct: 189 VSAEIFVVCQGFK 201


>gi|194894024|ref|XP_001977991.1| GG17939 [Drosophila erecta]
 gi|190649640|gb|EDV46918.1| GG17939 [Drosophila erecta]
          Length = 816

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLYDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|329766421|ref|ZP_08257965.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137020|gb|EGG41312.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 197

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 11/194 (5%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A  +G+R+R+AYKL Q+N  ++I+     ++DLG +PG W+Q+A ++ G   N 
Sbjct: 9   DQYRKLAHEQGYRSRAAYKLKQLNHSYRIIGPGFYVLDLGCAPGGWTQMAVKLVG---NK 65

Query: 96  TRVVAIDILDMEPILGVKFFKF----DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            +VV +D   +E I G    +     +FL  +   +  + +    + V+ D++    G+ 
Sbjct: 66  GKVVGVDTSYVEEIPGAHIIRENIENEFLVDELLSYFERKV----NAVICDLSPQVTGNW 121

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH   +SL  + +    ++L   G+ + K F G  + +    +KK F ++   KP AS
Sbjct: 122 SVDHAIQISLNYSCSKIMDKVLMHKGNAIFKVFDGEYSMEFRDYIKKKFSRINLTKPEAS 181

Query: 212 RAESVEMFLLAKGF 225
           R +S E++ +  GF
Sbjct: 182 RKQSSELYYVCLGF 195


>gi|328876585|gb|EGG24948.1| rRNA methyltransferase [Dictyostelium fasciculatum]
          Length = 873

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K+  L S +  +DL ++PG W QVA++   +    
Sbjct: 14  DKFYYLAKEQGFRSRAAFKLIQLNKKYNFLGSAKACLDLCAAPGGWMQVASKYMPA---Q 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  + PI      + D         I++A+     D+ L D A P +G   I 
Sbjct: 71  SVIVGVDLDPIRPIRNCIGLQEDITTAKCRAEIKKALKTWKVDICLHDGA-PNMGTSWIQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L   A   A E L  GG F+ K F+G   N ++ +  + F+KV   KP ASR 
Sbjct: 130 DAFQQAELTLHALKLATEFLTAGGWFVTKVFRGPDYNSLMWVFHQLFKKVDSTKPQASRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ +GF
Sbjct: 190 ASAEIFVVCQGF 201


>gi|195357054|ref|XP_002044929.1| GM11680 [Drosophila sechellia]
 gi|194124271|gb|EDW46314.1| GM11680 [Drosophila sechellia]
          Length = 817

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLYDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|108757449|ref|YP_631182.1| ribosomal RNA large subunit methyltransferase J [Myxococcus xanthus
           DK 1622]
 gi|123247821|sp|Q1D841|RLME_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|108461329|gb|ABF86514.1| ribosomal RNA large subunit methyltransferase J [Myxococcus xanthus
           DK 1622]
          Length = 213

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 9/196 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y Q+A+ EG RARSA+K+ ++ ++  +++    ++DLG++PG + Q+ A   G    
Sbjct: 15  KDHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILADAVGPKG- 73

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF---IRQAIGGNPDLVLSDMAYPTIGHR 151
             RV+ +DI+ + P     F +   LD+ + +F   + +   G  D V+SDMA  T G +
Sbjct: 74  --RVIGVDIVAIRP-FSQPFVQTAVLDVLADDFDAKLTELHAGPFDAVISDMAPKTSGIK 130

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ L   A   A      G  F+ K F G    D    ++  F++V  V+P A+
Sbjct: 131 ATDEARSLRLAGKALELAAARGRPGSSFVAKVFMGRDFEDFRNQIRALFEEVKVVRPEAT 190

Query: 212 RAESVEMFLLAKGFRK 227
           R  S+E++L+  G R+
Sbjct: 191 RGASMEVYLV--GLRR 204


>gi|197725282|pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
           Division From Thermoplasma Volcanicum Gss1
          Length = 191

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 14/185 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R+R+A+KL  + +++++++    ++++GSSPG W+QV       N+   ++++ID+ + E
Sbjct: 6   RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVL------NSLARKIISIDLQEXE 59

Query: 108 PILGVKFFKFD------FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
            I GV+F + D      F D+D    +R+      D V+SD      G    DH  +  +
Sbjct: 60  EIAGVRFIRCDIFKETIFDDID--RALREEGIEKVDDVVSDAXAKVSGIPSRDHAVSYQI 117

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            +     A+  L  GG+ L+K FQG  TND + + +K+F      KP ASR  S E+++ 
Sbjct: 118 GQRVXEIAVRYLRNGGNVLLKQFQGDXTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIX 177

Query: 222 AKGFR 226
             GF+
Sbjct: 178 FFGFK 182


>gi|70991863|ref|XP_750780.1| tRNA methyltransferase [Aspergillus fumigatus Af293]
 gi|66848413|gb|EAL88742.1| tRNA methyltransferase, putative [Aspergillus fumigatus Af293]
 gi|159124342|gb|EDP49460.1| tRNA methyltransferase, putative [Aspergillus fumigatus A1163]
          Length = 426

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 112/258 (43%), Gaps = 68/258 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPDKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA---------------------------------------NNTRVVAIDILD 105
                G  A                                        N ++V+ID+  
Sbjct: 70  KGESFGRRAWIEKKRKESEALKRIDHGSESESPAEEERKDDIAQLKPRRNVKIVSIDLQP 129

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAI-------GGNP-----------DLVLSDMAYPT 147
           M P+ G+   + D     +   + +A+         +P           DLV+SD A   
Sbjct: 130 MAPLEGITTLQADITHPSTIPLLLRALDPEAYDSASSPTPSAIQQPHPVDLVISDGAPDV 189

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A   A+ +L  GG F+ K F+G   + I   L+  F+KV   K
Sbjct: 190 TGLHDLDIYVQSQLLYSALNLAVGVLRPGGKFVAKIFRGRDVDLIYAQLRTVFEKVSVAK 249

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SRA S+E F++ +GF
Sbjct: 250 PRSSRASSLEAFVVCEGF 267


>gi|170042491|ref|XP_001848957.1| AdoMet-dependent rRNA methyltransferase spb1 [Culex
           quinquefasciatus]
 gi|167866033|gb|EDS29416.1| AdoMet-dependent rRNA methyltransferase spb1 [Culex
           quinquefasciatus]
          Length = 857

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 107/193 (55%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYKLAKETGYRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI- 153
           + V+ +D+  ++ + G      D   D    +  ++      D+VL+D A P +G   + 
Sbjct: 70  SIVIGVDLYAIKNVPGCISLVGDITSDKTKSDLTKELKTWKADVVLNDGA-PNVGRNWLF 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  + + L  +AT  A + L  GG F+ K F+    N ++ +LK+ F+KV   KP ASR 
Sbjct: 129 DAYQQVCLTLSATKLATQFLRPGGWFITKVFRSKDYNALIWVLKQLFKKVHATKPSASRN 188

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ + +R
Sbjct: 189 ESAEIFVVCQHYR 201


>gi|18859957|ref|NP_573099.1| CG8939 [Drosophila melanogaster]
 gi|7293173|gb|AAF48557.1| CG8939 [Drosophila melanogaster]
 gi|17862372|gb|AAL39663.1| LD23718p [Drosophila melanogaster]
 gi|220944838|gb|ACL84962.1| CG8939-PA [synthetic construct]
          Length = 817

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLYDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|167042175|gb|ABZ06908.1| putative FtsJ-like methyltransferase [uncultured marine
           crenarchaeote HF4000_ANIW93H17]
          Length = 197

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A +EG+R+RS+YKL ++++ ++I+     ++DLG +PG W+QVA ++ G   N 
Sbjct: 9   DHYRKLASVEGYRSRSSYKLKELHKSYRIIGVGHYVLDLGCAPGGWTQVAVQLAG---NK 65

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
            +V+ +D   +E I G    K D  D    + +    G   ++V+ D++    G+  +DH
Sbjct: 66  GKVMGVDTSFVEEIPGAYMLKSDICDGSVTKEVLSFFGKKVNVVICDLSPQVTGNWSVDH 125

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
              +S   AA     ++L   G+ L K F G  +N+    +KK F KV   KP  SR +S
Sbjct: 126 STQISSNYAAAKIMDQVLKKNGNALFKVFDGEYSNEFYQYVKKKFFKVKLKKPKVSRKQS 185

Query: 216 VEMFLLAKGF 225
            E++ +  G+
Sbjct: 186 SELYCICLGY 195


>gi|195398799|ref|XP_002058008.1| GJ15847 [Drosophila virilis]
 gi|194150432|gb|EDW66116.1| GJ15847 [Drosophila virilis]
          Length = 831

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKVDVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A       L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLYDAYQQICLTLNALKLGTHFLRGGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|46134619|ref|XP_389476.1| hypothetical protein FG09300.1 [Gibberella zeae PH-1]
          Length = 373

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 59/250 (23%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------- 88
           D Y + A+ +GWRARSA+KLLQ++E+  +     R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFDLFADVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 89  ----------------------TGSNANNT-----------------RVVAIDILDMEPI 109
                                  G +   T                 ++V+ID+  + P+
Sbjct: 70  GRAAWQDKEAKFRQQMLGILPKDGDDEQQTTEIQQNEEEPAKPREDVKIVSIDLQPISPL 129

Query: 110 LGVKFFKFDFLDLDSWEFIRQAI------------GGNP-DLVLSDMAYPTIGHRKIDHL 156
            G+   + D     +   +  A+              +P DLVLSD A    G   +D  
Sbjct: 130 AGITTLRADITHPATVPLLLSALDSSYDPKAAGTQASHPVDLVLSDGAPDVTGLHDLDIY 189

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
               L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SRA SV
Sbjct: 190 VQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKIFFEKVIVAKPRSSRASSV 249

Query: 217 EMFLLAKGFR 226
           E F++   F+
Sbjct: 250 EAFIVCINFQ 259


>gi|85086230|ref|XP_957655.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Neurospora crassa
           OR74A]
 gi|28918749|gb|EAA28419.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Neurospora crassa
           OR74A]
          Length = 387

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 59/250 (23%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------- 88
           D Y + A+ +GWRARSA+KLLQ++E+  + ++  R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFNLFENVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 89  ---------------------------------------TGSNANNTRVVAIDILDMEPI 109
                                                  T +     ++V+ID+  + P+
Sbjct: 70  GRCAWQDREAKFRQQMLNVFPEKQDAQDEVQRVQATQESTPAPREQVKIVSIDLQPISPL 129

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGG-------NP------DLVLSDMAYPTIGHRKIDHL 156
            G+   + D     +   + +A+         NP      DLV+SD A    G   +D  
Sbjct: 130 PGIITLRADITHPATVPLLLKALDPDFDPSTMNPQASHPVDLVISDGAPDVTGLHDLDIY 189

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
               L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV   KP +SRA SV
Sbjct: 190 VQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKVFFEKVYVAKPRSSRASSV 249

Query: 217 EMFLLAKGFR 226
           E F++   F+
Sbjct: 250 EAFIVCINFQ 259


>gi|213622212|ref|ZP_03374995.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 139

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 8/142 (5%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMAYPTIGHRKIDHLR 157
             +V+SDMA    G   +D  R
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPR 139


>gi|225561193|gb|EEH09474.1| 2'-O-ribose methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 381

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 112/268 (41%), Gaps = 78/268 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQV------ 84
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV      
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSNPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 85  --------------------AARITGSNA----------------------------NNT 96
                               A R+ G                                N 
Sbjct: 70  KGESFGRRAWEEKRRREQKQAQRLEGVQKGVETKEQQGEEEEEEEEGEEEKEKLKPRKNV 129

Query: 97  RVVAIDILDMEPILGVKFFKFDF------------LDLDSWEF------IRQAIGGNP-D 137
           ++VAID+  M P+ G+   K D             LD D++         R +   +P D
Sbjct: 130 KIVAIDLQPMTPLDGITCLKADITHPSTIPLLLEALDPDNYTHNDTLTTTRTSHRLHPVD 189

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK
Sbjct: 190 LVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLK 249

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
             F+ V   KP +SRA S+E F++ +GF
Sbjct: 250 TVFETVSVAKPRSSRASSLEAFVVCEGF 277


>gi|56758278|gb|AAW27279.1| SJCHGC04749 protein [Schistosoma japonicum]
          Length = 260

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 31/211 (14%)

Query: 5   PGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P  +  +GL+  + N RS  GSS+ W+ R  +DPYV+ A+LE +R RSA+KLLQ+NEK  
Sbjct: 14  PYCTFNQGLSCLITNVRSNHGSSQRWIARQRSDPYVKHARLESYRCRSAFKLLQLNEKIY 73

Query: 64  --ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR----VVAIDILDMEPILGVKFFKF 117
             + +    ++D G++PGSW QVA+ +  SN NN+     ++A D+L+   + GV     
Sbjct: 74  GGLFKPGDIVIDCGAAPGSWCQVASSLINSNDNNSNNQGLIIAFDLLNFAQLPGVSI--H 131

Query: 118 DFLDLDSWE----FIRQAIGGN------------------PDLVLSDMAYPTIGHRKIDH 155
             +DL++W      I Q+I  +                   D+VLSD+A    G R ID 
Sbjct: 132 SGIDLNNWSECINLINQSISNHFINNNNRQLQDIQKLLPAVDVVLSDIAPNVTGIRDIDI 191

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
              M L        + +   G  F++K F+ 
Sbjct: 192 PAMMKLAYNILRVTISVSKQGASFVIKLFES 222


>gi|326430676|gb|EGD76246.1| FtsJ cell division protein [Salpingoeca sp. ATCC 50818]
          Length = 934

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G RARSA+KLLQ+N ++  L      +DL ++PG W QVA      N+N 
Sbjct: 13  DKFYHLAKESGLRARSAFKLLQLNRQYDFLTGASVCIDLCAAPGGWMQVAKEAMTKNSNT 72

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGH 150
           T V+ +D++ ++PI G    + D     + E  R  +  N      D+VL D A P +G 
Sbjct: 73  T-VIGVDLVPIQPIKGCISIQADI----TTEHCRAQLRKNMNHRKADVVLHDGA-PNVGT 126

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             I D      L   +   A + L  GG F+ K F+      +L +  K F+KV   KP 
Sbjct: 127 SWIQDAFTQAELVLQSLKLATQFLRKGGTFVTKVFRSRDYPKLLYVFGKLFEKVHATKPS 186

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E+F++ + +
Sbjct: 187 SSRNVSAEIFVVCQRY 202


>gi|322710895|gb|EFZ02469.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Metarhizium anisopliae
           ARSEF 23]
          Length = 417

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 115/257 (44%), Gaps = 66/257 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------ 89
           D Y + A+ +GWRARSA+KLLQ++E+  +  +  R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFNLFANVSRVVDLCAAPGSWSQVLSRVLIKNEQF 69

Query: 90  ---------------------------GSNA---------------NNTRVVAIDILDME 107
                                      G++A               ++ ++VAID+  + 
Sbjct: 70  GLKSWQDGEAHLRRSMLSVLPASTTPGGTSAVEAAIAAQHAASRPRDDVKIVAIDLQPIS 129

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIG-----------------GNP-DLVLSDMAYPTIG 149
           P+ G+   + D     +   +  A+                   +P DLVLSD A    G
Sbjct: 130 PLAGITTLQADITHPATVPLLLGALDPGRDAQRAAEGAAEGKASHPVDLVLSDGAPDVTG 189

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV+  KP 
Sbjct: 190 LHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKIFFEKVVVAKPR 249

Query: 210 ASRAESVEMFLLAKGFR 226
           +SRA S+E F++   FR
Sbjct: 250 SSRASSMEAFIVCLNFR 266


>gi|238501666|ref|XP_002382067.1| tRNA methyltransferase, putative [Aspergillus flavus NRRL3357]
 gi|83766939|dbj|BAE57079.1| unnamed protein product [Aspergillus oryzae]
 gi|220692304|gb|EED48651.1| tRNA methyltransferase, putative [Aspergillus flavus NRRL3357]
          Length = 427

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 64/254 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+QI+E+     H+  +   R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  -------------------TGSNAN---------------------NTRVVAIDILDMEP 108
                                +NAN                     N ++V+ID+  M P
Sbjct: 70  KGESFGRRAWVEKKGKEAAALANANGDATDNNVDGDAAMEELKPRKNVKIVSIDLQPMAP 129

Query: 109 ILGVKFFKFDF------------LDLDSWEFIRQAIGG----NP-DLVLSDMAYPTIGHR 151
           + G+   K D             LD ++++    +       +P DLV+SD A    G  
Sbjct: 130 LEGITTLKADITHPSTIPLLLRALDPEAYDSTTSSPSSLRQPHPVDLVISDGAPDVTGLH 189

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D      L  AA   AL +L  GG F+ K F+G   + I   L+  F+KV   KP +S
Sbjct: 190 DLDIYIQSQLLYAALNLALGVLRPGGKFVAKIFRGRDVDLIYAQLRTVFEKVSVAKPRSS 249

Query: 212 RAESVEMFLLAKGF 225
           RA S+E F++ +GF
Sbjct: 250 RASSLEAFVVCEGF 263


>gi|193690534|ref|XP_001942837.1| PREDICTED: putative rRNA methyltransferase 3-like [Acyrthosiphon
           pisum]
          Length = 834

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 6/200 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D +   A+  G+R+R+A+KLLQ+N K + LQ  R ++DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYHLAKETGFRSRAAFKLLQLNRKFEFLQKARVLIDLCAAPGGWMQVAKQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
            +   ++ VV +D+  ++P+ G      D         + + +     D+VL+D A P +
Sbjct: 65  -NMPVSSIVVGVDLYPIKPVPGCICLTEDITTPQCQSALNKELQTYKADVVLNDGA-PNV 122

Query: 149 GHRKIDHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   I    T S L  +A       L  GG F+ K F+    N ++ + K+ F+KV   K
Sbjct: 123 GQNWIYDAYTQSCLTLSALKLCCHNLREGGWFITKVFRSKDYNALMWVFKQLFRKVHATK 182

Query: 208 PVASRAESVEMFLLAKGFRK 227
           P ASR+ES E+F++ + + K
Sbjct: 183 PQASRSESAEIFVVCQYYLK 202


>gi|167527299|ref|XP_001747982.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773731|gb|EDQ87369.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1021

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G RARSA+KL+Q+N K   LQ ++  +DL ++PG W QVAA+   +   +
Sbjct: 101 DKFYHLAKETGLRARSAFKLVQLNRKFNFLQQSKVCIDLCAAPGGWMQVAAQ---NMPPS 157

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D++ ++PI G      D       + +R+ +     D+VL D A P +G   I 
Sbjct: 158 SLIIGVDLVPIKPIKGCIGLVADITTERCRQMLRKEMKHLKADVVLHDGA-PNVGTSWIQ 216

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D     SL   +   A E L   G F+ K F+    + ++ + K+ F+KV   KP +SR 
Sbjct: 217 DAFTQASLVLKSLKLATEFLVEKGTFVTKVFRSRDYHALMWVFKQLFRKVQATKPTSSRN 276

Query: 214 ESVEMFLLAKGF 225
            S E+F++ +GF
Sbjct: 277 VSAEIFVVCQGF 288


>gi|320593423|gb|EFX05832.1| trm7-like tRNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 385

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 112/257 (43%), Gaps = 67/257 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------- 88
           D Y + A+ +GWRARSA+KLLQ++E+  +     R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFDLFSGVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 89  ----------------------------TGSNANNT-----------RVVAIDILDMEPI 109
                                         S A +T           ++V+ID+  + P+
Sbjct: 70  GRAAWQDREAELRQQMLGVLRMDGGKEREDSRAASTTSLPSTIRSDVKIVSIDLQPISPL 129

Query: 110 LGVKFFKFDFLDLDSWEFIRQA--------------------IGGNP-DLVLSDMAYPTI 148
            G+   + D     +   + QA                    +  NP DLVLSD A    
Sbjct: 130 PGIVTLRADITHPATVPLLLQALDPERQQPDSEDTSDSTAAIVADNPVDLVLSDGAPDVT 189

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F++V+  KP
Sbjct: 190 GLHDLDMYVQSQLLFAALNLALCVLRPGGKFVAKIFRGRNVDLLFAQLKLFFRRVVVAKP 249

Query: 209 VASRAESVEMFLLAKGF 225
            +SRA SVE F++   F
Sbjct: 250 RSSRASSVEAFIVCLDF 266


>gi|212529056|ref|XP_002144685.1| tRNA methyltransferase, putative [Penicillium marneffei ATCC 18224]
 gi|210074083|gb|EEA28170.1| tRNA methyltransferase, putative [Penicillium marneffei ATCC 18224]
          Length = 429

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 112/271 (41%), Gaps = 81/271 (29%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHADPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 90  -----GSNA-------------------------------------------NNTRVVAI 101
                G  A                                            N ++VAI
Sbjct: 70  KGESFGRRAWLEKRRRDKKALEKLEKESKNTETTTEEDSDDTEDESAILKPRKNVKIVAI 129

Query: 102 DILDMEPILGVKFFKFDF------------LDLDSWE--------FIRQAIGGNP----- 136
           D+  M P+ G+   K D             LD + +E         I       P     
Sbjct: 130 DLQPMAPLEGITMMKADITHPSTIPLLLRALDPEYYEGESGKQDPTIEPTTTKLPSRHPH 189

Query: 137 --DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLV+SD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + +  
Sbjct: 190 PVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLLYA 249

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 250 QLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 280


>gi|195059568|ref|XP_001995663.1| GH17878 [Drosophila grimshawi]
 gi|193896449|gb|EDV95315.1| GH17878 [Drosophila grimshawi]
          Length = 836

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 18/198 (9%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------I 88
           D + Q A+  G+R+R+A+KL+Q+N K+  LQ ++  VDL ++PG W QVA +       +
Sbjct: 13  DKFYQLAKETGFRSRAAFKLIQLNRKYGFLQESQVCVDLCAAPGGWMQVAKQNMPVSSIV 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            G +    R +   I  +E I   K  +   ++L SW+          D+VL D A P +
Sbjct: 73  IGVDLFPIRAIPGCISLVEDITTEKCRQSLTMELQSWKV---------DVVLHDGA-PNV 122

Query: 149 GHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           G   + D  + + L   A   A + +  GG F+ K F+    N +L +LK+ F+KV   K
Sbjct: 123 GRNWLYDAYQQICLTLNALKLATQFMRKGGWFVTKVFRSKDYNSLLWVLKQLFKKVHATK 182

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E+F++ + +
Sbjct: 183 PSASRKESAEIFVVCQYY 200


>gi|195479104|ref|XP_002100764.1| GE17245 [Drosophila yakuba]
 gi|194188288|gb|EDX01872.1| GE17245 [Drosophila yakuba]
          Length = 819

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 14/196 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G      D     + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGCIGLVEDI----TTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             + D  + + L   A   +   L  GG F+ K F+    N +L +LK+ F+KV   KP 
Sbjct: 125 NWLYDAYQQICLTLNALKLSTLFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPS 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR ES E+F++ +G+
Sbjct: 185 ASRKESAEIFVVCQGY 200


>gi|157169535|ref|XP_001657887.1| ribosomal RNA methyltransferase [Aedes aegypti]
 gi|108883667|gb|EAT47892.1| ribosomal RNA methyltransferase [Aedes aegypti]
          Length = 852

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+R+A+KL+Q+N +   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYKLAKETGYRSRAAFKLIQLNRRFGFLQQSQVCIDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI- 153
           + V+ ID+  ++ + G      D   D    +  ++      D+VL+D A P +G   + 
Sbjct: 70  SVVIGIDLFPIKNVPGCISLVGDITSDKTKSDLAKELKTWKADVVLNDGA-PNVGRNWLF 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP ASR 
Sbjct: 129 DAYQQVCLTLSAVKLATQFLRPGGWFVTKVFRSKDYNALIWVLKQLFKKVHATKPSASRN 188

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ + +R
Sbjct: 189 ESAEIFVVCQHYR 201


>gi|157869652|ref|XP_001683377.1| ribosomal RNA methyltransferase-like protein [Leishmania major]
 gi|68126442|emb|CAJ04191.1| ribosomal RNA methyltransferase-like protein [Leishmania major
           strain Friedlin]
          Length = 285

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 31/227 (13%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGS 80
           QG+SR W+ R   DP+V +A+ +G+ ARSAYKL  I+++  +   Q  R  +DLG SPG 
Sbjct: 9   QGTSRQWMQRQSQDPFVTKARQDGYVARSAYKLTHIDDRFHLFDRQHTRIAIDLGCSPGG 68

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNP--- 136
           W QV   I     +   ++ +D+L ++  I      + DF D+ + E + + +  +    
Sbjct: 69  WCQV---IRERAGDRCFLLGVDLLPIKAQIPDAVIVQGDFTDVATQEKLVKYLAHHSATL 125

Query: 137 --------------------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                               D+V SDM    +G  + D  R   L   A      +L +G
Sbjct: 126 GRGDATTAVAASSPSCFTKVDVVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRVG 184

Query: 177 GDFLVKTFQG-GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           G F  K         ++ C L + F  V   KP ASR  S E FL+A
Sbjct: 185 GHFACKVLGSRAAYEELWCRLSRLFLTVHACKPPASRMHSDEAFLVA 231


>gi|219117612|ref|XP_002179598.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408651|gb|EEC48584.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 209

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 103/195 (52%), Gaps = 10/195 (5%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNT 96
           Y Q A+ +G R+R+A+KL QIN K+ +L+ +   ++DL ++PG W+QVAAR       + 
Sbjct: 1   YSQVAKEQGLRSRAAFKLTQINRKYPVLEKAQNAVLDLCAAPGGWTQVAARTCN---KSV 57

Query: 97  RVVAIDILDMEPILGVKFFKFDFLDLDSWEF---IRQAIGGNP-DLVLSDMAYPTIG-HR 151
            ++A+DIL +      +       D+ + +    I+ A+ G P D+VL D A P IG   
Sbjct: 58  PIIAVDILPIRSFANAQNITTLIGDITTDKCKSDIKHALQGRPVDVVLHDGA-PNIGADY 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D      +   A   A + L  GG F+ K ++         LL++ FQ V   KP AS
Sbjct: 117 GKDAYEQNEIALHALRCATQHLVKGGTFITKVYRSRDYASFQWLLQQLFQGVQAFKPKAS 176

Query: 212 RAESVEMFLLAKGFR 226
           RA+S E+FL+ + ++
Sbjct: 177 RAQSAEIFLVCEKYK 191


>gi|213162026|ref|ZP_03347736.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 128

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 8/129 (6%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           PG WSQ V  +I G      R++A D+L M+PI+GV F + DF D    + + + +G + 
Sbjct: 62  PGGWSQYVVTQIGGKG----RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 137 -DLVLSDMA 144
             +V+SDMA
Sbjct: 118 VQVVMSDMA 126


>gi|226469918|emb|CAX70240.1| FtsJ homolog 1 [Schistosoma japonicum]
          Length = 189

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 11/164 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-----RRIVDLGSSPGSWSQV- 84
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL S       R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 85  AARITGSNANNTR----VVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLV 139
           + R+  S + + R    +VA+D+  M PI GV   + D    D+  + I+   G    LV
Sbjct: 65  SKRLWESKSPDDRKFVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFSGKLAQLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + D A    G   +D      L  AA      +L +GG F+ K 
Sbjct: 125 VCDGAPDVTGLHDLDEYVQSHLILAALTICSRVLELGGTFVAKV 168


>gi|322827301|gb|EFZ31545.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 253

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 20/211 (9%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWS 82
             R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +   N  R +VD+G SPG W 
Sbjct: 12  GGRQWMEKQARDPFVLEARRRGYVARSAFKLLEMDDKFGLFARNHTRVVVDIGCSPGGWL 71

Query: 83  QVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAI--------- 132
           QVA    G   +   +  +D+L + P + G    + DF D+     I+Q +         
Sbjct: 72  QVARERCG---DRCALFGVDLLHVSPTVTGAVCIQGDFTDMA----IQQQLLLRMENVHA 124

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-ND 191
            G  D+V+SDM          D  + M L   A  FA   L  GG+F+ K     T   +
Sbjct: 125 NGLVDVVMSDMCLNRGSGGTDDRQKQMQLNMEALAFATSQLRTGGNFVCKVLGTPTAFEE 184

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   L++ F +    KP +SR  S E F++ 
Sbjct: 185 LRGELQRWFVRSTLCKPFSSRRGSDEAFMVC 215


>gi|255079048|ref|XP_002503104.1| predicted protein [Micromonas sp. RCC299]
 gi|226518370|gb|ACO64362.1| predicted protein [Micromonas sp. RCC299]
          Length = 200

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 5/193 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+ +G+R+R+++KL+Q+N K+      R  +DL ++PG W QVA +       
Sbjct: 3   TDKFYYLAKEQGFRSRASFKLVQLNRKYDFFSGARACMDLCAAPGGWLQVAQKYM---PM 59

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRK 152
           ++ +V +D+  ++PI G   F  D         +R+    G   D+V++D A    G+  
Sbjct: 60  SSLIVGVDLAPIKPIRGCTTFVDDITTQSCRAQLRRVTPEGTKYDIVMNDGAPNVGGNFA 119

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            +     +L   +   A E L  GG F+ K F+    + +L  +++ F+KV   KPVASR
Sbjct: 120 AESYTQAALTLDSLRLASEFLREGGWFVTKVFRSTEYHALLYSMQQLFKKVESTKPVASR 179

Query: 213 AESVEMFLLAKGF 225
             S E++++  G+
Sbjct: 180 GTSAEIYVVCIGY 192


>gi|71665009|ref|XP_819479.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884782|gb|EAN97628.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 253

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 20/211 (9%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWS 82
             R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +   N  R +VD+G SPG W 
Sbjct: 12  GGRQWMEKQARDPFVLEARRRGYVARSAFKLLEMDDKFGLFARNHTRVVVDIGCSPGGWL 71

Query: 83  QVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAI--------- 132
           QVA    G   +   +  +D+L + P + G    + DF D+     I+Q +         
Sbjct: 72  QVARERCG---DRCALFGVDLLHVSPAVTGAVCIQGDFTDMA----IQQQLLSRMENVHA 124

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-ND 191
            G  D+V+SDM          D  + M L   A  FA   L  GG+F+ K     T   +
Sbjct: 125 NGLVDVVMSDMCLNRGSGGTDDRQKQMQLNMEALAFATSQLRTGGNFVCKVLGTPTAFEE 184

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   L++ F +    KP +SR  S E F++ 
Sbjct: 185 LRGELQRWFVRSTLCKPFSSRRGSDEAFMVC 215


>gi|328772897|gb|EGF82934.1| hypothetical protein BATDEDRAFT_831 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 834

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KL+Q+N+K+  L+  + +VDL ++PG W QVA +        
Sbjct: 13  DKYYHMAKEQGFRARSAFKLIQLNKKYSFLEKAKVVVDLCAAPGGWLQVAQKYM---PKP 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++PI GV     D       + IR  +     D+ L D A P +G   + 
Sbjct: 70  SLIIGLDLAPIKPISGVITHVEDITTSKCRQTIRSELKDWKVDVFLHDGA-PNVGISWLQ 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  +A   A E L   G F+ K F+    N +L + ++ F+KV   KP +SR 
Sbjct: 129 DAFGQSELTLSALKLATEFLMPNGTFVTKVFRSKDYNKLLWVFQQLFRKVEATKPASSRN 188

Query: 214 ESVEMFLLAKGF 225
            S E+F++ + +
Sbjct: 189 VSAEIFVVCREY 200


>gi|260900673|ref|ZP_05909068.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AQ4037]
 gi|308110887|gb|EFO48427.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AQ4037]
          Length = 122

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 3/98 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG++PG WSQ
Sbjct: 8   ASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
            AA+I G   ++ +++A D+L M+PI GV F + DF D
Sbjct: 68  YAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRD 102


>gi|58263807|ref|XP_569180.1| RNA methyltransferase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108256|ref|XP_777079.1| hypothetical protein CNBB3110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|73621937|sp|Q5KM86|SPB1_CRYNE RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|50259764|gb|EAL22432.1| hypothetical protein CNBB3110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223830|gb|AAW41873.1| RNA methyltransferase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 908

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RARSA+KL+ +N K+ +L   R  +DL ++PG W QVA +        
Sbjct: 14  DKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYM---PKG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++P+  V  F  D       + +RQ +     DLVL D A P +G   + 
Sbjct: 71  SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADLVLHDGA-PNVGSAWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F+ V   KP +SR 
Sbjct: 130 DAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ + F
Sbjct: 190 VSAEIFVVCRDF 201


>gi|321251839|ref|XP_003192196.1| RNA methyltransferase [Cryptococcus gattii WM276]
 gi|317458664|gb|ADV20409.1| RNA methyltransferase, putative [Cryptococcus gattii WM276]
          Length = 907

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RARSA+KL+ +N K+ +L   R  +DL ++PG W QVA +        
Sbjct: 14  DKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYM---PKG 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D+  ++P+  V  F  D       + +RQ +     DLVL D A P +G   + 
Sbjct: 71  SLIIGVDLNAIKPLPHVTTFVSDITTPHCRQTLRQHMHDWKADLVLHDGA-PNVGSAWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L +  + F+ V   KP +SR 
Sbjct: 130 DAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ + F
Sbjct: 190 VSAEIFVVCRDF 201


>gi|71656457|ref|XP_816775.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70881926|gb|EAN94924.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 253

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 20/211 (9%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWS 82
             R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +   N  R +VD+G SPG W 
Sbjct: 12  GGRQWMEKQARDPFVLEARRRGYVARSAFKLLEMDDKFGLFARNHTRVVVDIGCSPGGWL 71

Query: 83  QVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAI--------- 132
           QVA    G   +   +  +D+L + P + G    + DF D+     I+Q +         
Sbjct: 72  QVARERCG---DRCALFGVDLLHVSPTVTGAVCIQGDFTDMA----IQQQLLSRMENVHA 124

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-ND 191
            G  D+V+SDM          D  + M L   A  FA   L  GG+F+ K     T   +
Sbjct: 125 NGLVDVVMSDMCLNRGSGGTDDRQKQMQLNMEALAFATSQLRTGGNFVCKVLGTPTAFEE 184

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   L++ F +    KP +SR  S E F++ 
Sbjct: 185 LRGELQRWFVRSSLCKPFSSRRGSDEAFMVC 215


>gi|324504254|gb|ADY41837.1| RRNA methyltransferase 3 [Ascaris suum]
          Length = 800

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 108/194 (55%), Gaps = 6/194 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+  G+R+R+A+KL+Q+N++ + LQ +R ++DL ++PG W QVAA+      ++
Sbjct: 13  DKFYHLAKEAGYRSRAAFKLIQLNKRFEFLQKSRALIDLCAAPGGWLQVAAQ--NMPVSS 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
            R + ID++ ++PI      + D     + + I++ +     D VL D A P +G   + 
Sbjct: 71  VR-IGIDLVPIKPINSCITLQGDITTEKARQMIKKELQTWEADCVLHDGA-PNVGLNWLH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L  +A   A ++L   G F+ K F+    + ++ + +K F+KV   KP ASR 
Sbjct: 129 DAFQQNCLTLSALRLATQVLAKNGCFVTKVFRSNDYHSLISVFEKLFKKVHVWKPAASRL 188

Query: 214 ESVEMFLLAKGFRK 227
           ES E+F++ + + K
Sbjct: 189 ESAEIFVVCEKYLK 202


>gi|242764601|ref|XP_002340808.1| tRNA methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724004|gb|EED23421.1| tRNA methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 425

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 112/272 (41%), Gaps = 82/272 (30%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+  
Sbjct: 10  DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHADPDSVTRVVDLCAAPGSWSQVLSRVLI 69

Query: 89  -----------------------TGSNANNT-----------------------RVVAID 102
                                   G  + NT                       ++VAID
Sbjct: 70  KGESFGRRAWLEKRRRDKKALEKVGKESENTQEGEQDDDDTEDESIILKPRKNVKIVAID 129

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--------------------------NP 136
           +  M P+ G+   K D     +   + +A+                            +P
Sbjct: 130 LQPMAPLEGITMMKADITHPSTIPLLLRALDPEYYEEGSEKRDTPQSNTTTSTKLPSRHP 189

Query: 137 ---DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              DLV+SD A    G   +D      L  AA    + +L  GG F+ K F+G   + + 
Sbjct: 190 HPVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLTIGVLRPGGKFVAKIFRGRDVDLLY 249

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 250 AQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 281


>gi|312372717|gb|EFR20615.1| hypothetical protein AND_19798 [Anopheles darlingi]
          Length = 890

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+R+A+KL+Q+N +   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYKLAKESGYRSRAAFKLIQLNRRFAFLQQSQVCIDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI- 153
           + V+ +D+  ++ + G      D   D    +  ++      D+VL+D A P +G   + 
Sbjct: 70  SIVIGVDLYPIKNVPGCISLVGDITSDKTKSDLAKELKTWKADVVLNDGA-PNVGKNWLH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP ASR 
Sbjct: 129 DAYQQVCLTLSAVKLATQFLRPGGWFITKVFRSKDYNALIWVLKQLFKKVHATKPSASRK 188

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ + +R
Sbjct: 189 ESAEIFVVCQHYR 201


>gi|254166970|ref|ZP_04873823.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
 gi|197623826|gb|EDY36388.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
          Length = 155

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           +DLG++PG WSQVA +I G      RV+A+DI  ++ +  V++ + D    ++ + I++ 
Sbjct: 1   MDLGAAPGGWSQVALKIVGREG---RVIAVDIKPVK-LRDVEYIRGDVYSDETLKRIKER 56

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+VLSDM+    G    DH R++ L E A F A  +L   G F+VK FQG   N 
Sbjct: 57  -AEKVDVVLSDMSPKISGISSWDHARSIDLAERALFIAENVLRERGHFVVKIFQGDMLNG 115

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L   +  F+ V   KP AS  ES E++++ K F+
Sbjct: 116 YLKKCRDRFEMVKVHKPKASNRESPEIYVVCKRFK 150


>gi|116202349|ref|XP_001226986.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88177577|gb|EAQ85045.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 399

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 111/251 (44%), Gaps = 60/251 (23%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------ 89
           D Y + A+ +GWRARSA+KLLQ++E+  + +   R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFNLFEDVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 90  GSNA-----------------------------------------NNTRVVAIDILDMEP 108
           G  A                                          + ++V+ID+  + P
Sbjct: 70  GRCAWQDREAKFRQHMLNVVPSDTTPDQEKPISKDEVPQAQLKPRKDVKIVSIDLQPISP 129

Query: 109 ILGVKFFKFDF------------LDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           + G+   + D             LD D   E + Q      DLV+SD A    G   +D 
Sbjct: 130 LPGIITLRADITHPATVPLLLKALDPDYDPETMNQQASQPVDLVISDGAPDVTGLHDLDI 189

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
                L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV   KP +SRA S
Sbjct: 190 YVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKIFFEKVYVAKPRSSRASS 249

Query: 216 VEMFLLAKGFR 226
           VE F++   F+
Sbjct: 250 VEAFIVCINFQ 260


>gi|145603067|ref|XP_362057.2| hypothetical protein MGG_04502 [Magnaporthe oryzae 70-15]
 gi|145011391|gb|EDJ96047.1| hypothetical protein MGG_04502 [Magnaporthe oryzae 70-15]
          Length = 341

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 64/265 (24%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           + R    +SR W  R   D + + A+++G ++R+A+KL++++ ++++ +  + +VDLG +
Sbjct: 58  QTRPSSSNSR-WKARQGRDYFAREAKVQGLKSRAAFKLIEMDSRYRLFKKGQLVVDLGYA 116

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILG----------------VKFFKFD--- 118
           PGSWSQVA   T       RV+ ID++  +P  G                VK F  D   
Sbjct: 117 PGSWSQVAMERTKPGG---RVLGIDVIPAQPPPGVATIQGNFLSPVVQGMVKQFVVDVHR 173

Query: 119 ---------------------------------FLDLD-----SWEFIRQAIGGNPDLVL 140
                                            ++D++       E +R AI        
Sbjct: 174 LQARDRARAGGAGAAGDDAGGGEADDCVEEKQSYIDMERHSVAEEEVVRAAISAEDGNDC 233

Query: 141 SDMAYPTIGHRKI---DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
             +A P          D      LC AA  FA + L  GG F+ K +QG    ++   L+
Sbjct: 234 EGIASPRAADASKGTQDKKLVDELCHAALRFASDTLRPGGHFVCKFYQGSADKELETQLR 293

Query: 198 KHFQKVIHVKPVASRAESVEMFLLA 222
           K F KV   KP +SR+ES E F +A
Sbjct: 294 KLFTKVHREKPDSSRSESKEAFFVA 318


>gi|255543715|ref|XP_002512920.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
 gi|223547931|gb|EEF49423.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
          Length = 828

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 9/200 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D + + A+  G+R+R+++KL+Q++ K Q L S+R ++DL ++PG W QVA +    
Sbjct: 7   KHRLDKFYRLAKEHGYRSRASWKLVQLDSKFQFLHSSRAVLDLCAAPGGWMQVAVQRVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ ID++ + PI G    + D    +    +++ +G +     DLVL D   P 
Sbjct: 67  ---GSLVLGIDLVKIAPIRGATSIEQDITKPECKARVKKIMGEHGVKAFDLVLHD-GSPN 122

Query: 148 IGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           IG     + +   +L   A   A + L   G F+ K F+    N ++  L + F+KV   
Sbjct: 123 IGGAWAQEAMSQNALVIDAVRLATQFLAPKGTFVTKVFRSQDYNSVIYCLNQLFEKVEVD 182

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP ASR+ S E+F+L   ++
Sbjct: 183 KPAASRSASAEIFVLGLKYK 202


>gi|66811534|ref|XP_639947.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
 gi|74854041|sp|Q54NX0|RRMJ3_DICDI RecName: Full=rRNA methyltransferase 3 homolog; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|60466892|gb|EAL64936.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
          Length = 833

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K+  L + +  +DL ++PG W QVA++        
Sbjct: 14  DKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASKYMPV---Q 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ +  +        D         I++A+     D+ L D A P +G   + 
Sbjct: 71  SLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDVCLHDGA-PNMGTSWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L   A   A E L  GG F+ K F+G   N ++ +  K F+KV   KP +SR 
Sbjct: 130 DAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNKLFKKVESTKPPSSRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ +GF
Sbjct: 190 ASAEIFVVCQGF 201


>gi|330840582|ref|XP_003292292.1| hypothetical protein DICPUDRAFT_57851 [Dictyostelium purpureum]
 gi|325077462|gb|EGC31172.1| hypothetical protein DICPUDRAFT_57851 [Dictyostelium purpureum]
          Length = 817

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K+  L S +  +DL ++PG W QVA++        
Sbjct: 14  DKFYYLAKEQGYRSRAAFKLVQLNKKYNFLGSAKACLDLCAAPGGWMQVASKYMPV---Q 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D++ +  +        D         I++A+     D+ L D A P +G   + 
Sbjct: 71  SLIVGVDLVPIRQVRNCISLAEDITTQKCRTEIKKALKTWKVDVCLHDGA-PNMGTSWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L   A   A E L  GG F+ K F+G   N ++ +  K F+KV   KP ASR 
Sbjct: 130 DAYQQAELTLHALKLATEFLATGGWFVTKVFRGADYNSLIWVFNKLFRKVESTKPQASRN 189

Query: 214 ESVEMFLLAKGF 225
            S E+F++ +GF
Sbjct: 190 ASAEIFVVCQGF 201


>gi|281211427|gb|EFA85591.1| rRNA methyltransferase [Polysphondylium pallidum PN500]
          Length = 830

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 6/192 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K+  L S +  +DL ++PG W QVA++        
Sbjct: 24  DKFYYLAKEQGYRSRAAFKLIQLNKKYNFLGSAKACLDLCAAPGGWMQVASKYM---PVQ 80

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + +V +D+  + PI      + D         I++++     D+ L D A P +G   I 
Sbjct: 81  SLIVGVDLDPIRPIKNCIGLQEDITTQKCRTEIKKSLKTWKVDICLHDGA-PNMGTSWIQ 139

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  +   L   A   A E L  GG F+ K F+G   N +L +  + F+KV   KP ASR 
Sbjct: 140 DAYQQAELTLHALKLATEFLVAGGWFVTKVFRGPDYNALLWVFHQLFKKVDSTKPQASRN 199

Query: 214 ESVEMFLLAKGF 225
            S E+F++ +GF
Sbjct: 200 ASAEIFVVCQGF 211


>gi|194378570|dbj|BAG63450.1| unnamed protein product [Homo sapiens]
          Length = 145

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 62/86 (72%), Gaps = 4/86 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G
Sbjct: 23  RCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCG 80

Query: 76  SSPGSWSQVAARITGSNANNTRVVAI 101
           ++PG+WSQVA  +   NA  T  V++
Sbjct: 81  AAPGAWSQVA--VQKVNAAGTDGVSL 104


>gi|310800597|gb|EFQ35490.1| FtsJ-like methyltransferase [Glomerella graminicola M1.001]
          Length = 410

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 112/256 (43%), Gaps = 65/256 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------- 88
           D Y + A+ +GWRARSA+KLLQ++E+  +  +  R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFDLFANVTRVVDLCAAPGSWSQVLSRVLIKGEKF 69

Query: 89  --------------------------TGSNA------------------NNTRVVAIDIL 104
                                      G++A                   + ++V+ID+ 
Sbjct: 70  GRSAWQDREAKFRQEMLGVFPAAPSEAGASAADKSDAEAAAGEEEIHPRKDVKIVSIDLQ 129

Query: 105 DMEPILGVKFFKFDFL--------------DLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
            + P+ G+   + D                D D+    +Q      DLV+SD A    G 
Sbjct: 130 PISPLPGIVTLRADITHPATVPLLLKALDPDYDANLTAKQQATDRVDLVISDGAPDVTGL 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+ V+  KP +
Sbjct: 190 HDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKIFFETVVVAKPRS 249

Query: 211 SRAESVEMFLLAKGFR 226
           SRA SVE F++   F+
Sbjct: 250 SRASSVEAFIVCINFQ 265


>gi|240995616|ref|XP_002404632.1| ribosomal RNA methyltransferase, putative [Ixodes scapularis]
 gi|215491634|gb|EEC01275.1| ribosomal RNA methyltransferase, putative [Ixodes scapularis]
          Length = 817

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 24/205 (11%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D +   A+  G+R+R+A+KL+Q+N K + LQ +R ++DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYHLAKETGYRSRAAFKLIQLNRKFEFLQKSRVLIDLCAAPGGWLQVAQKYM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFL----------DLDSWEFIRQAIGGNPDLV 139
                ++ +V +D++ +  I  V   + D            +L +W+          D+V
Sbjct: 67  ---PVSSVIVGVDLVPIRAIPNVITIQDDITTGSCRFKLKKELKTWK---------ADIV 114

Query: 140 LSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           L+D A P +G   + D      L   A   A E L  GG F+ K F+      ++ +LKK
Sbjct: 115 LNDGA-PNVGKSWVHDAYGQNVLTLHAVKLATEFLTKGGWFITKVFRSKDYQALMWVLKK 173

Query: 199 HFQKVIHVKPVASRAESVEMFLLAK 223
            F+K+   KP ASR ES E+F++ +
Sbjct: 174 LFRKISATKPQASRHESAEIFVVCQ 198


>gi|71403252|ref|XP_804446.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70867422|gb|EAN82595.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 296

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 113/256 (44%), Gaps = 65/256 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---RRIVDLGSSPGSWSQ--------- 83
           D Y ++A+ EG+RARSAYKLLQ++E+  IL  +     +VDL ++PGSWSQ         
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQLHEEFNILNRDDIQTGVVDLCAAPGSWSQLLARHLREE 69

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFD------------------------- 118
           V  R    ++   R+VA+D+ +M PI GV+  + D                         
Sbjct: 70  VGGRTEKRSSGAPRIVAVDLQEMMPIEGVQLLQGDITSEATAREIIRLLNIKEDTASVND 129

Query: 119 -FLDLDSWEFIRQ--------------AIGG-------------NPDLVLSDMAYPTIGH 150
            ++D +  +F  Q              A GG               DLV+ D A    G 
Sbjct: 130 AYVDSEEDKFAIQTDKGGRSTARRPSLAPGGRKSYSDHTNSCEKKADLVVCDGAPDVTGM 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            ++D      L  AA      +L  GG F+ K F+G  T  ++   +  F+ VI  KP +
Sbjct: 190 HELDEYLQHHLLLAALNITTFVLRCGGTFVTKIFRGPNTPFLVAKSEVFFRHVIIAKPRS 249

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S+E F++ + ++
Sbjct: 250 SRNASMEAFMVCQDYQ 265


>gi|70944493|ref|XP_742172.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521000|emb|CAH79645.1| hypothetical protein PC000405.03.0 [Plasmodium chabaudi chabaudi]
          Length = 284

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 104/193 (53%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I ++   ++DL ++PG W QVA +   + + +
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAKKYNIFKNANILIDLCAAPGGWLQVAYK---NMSKS 69

Query: 96  TRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR-K 152
           + ++ +D++ +  I   V   K D   ++    I+  I     D++L+D A P +G    
Sbjct: 70  STIIGVDLMPIRKIDNNVITIKSDITSVECIRKIKDIIKYEKADVILNDGA-PNVGTTYS 128

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L  ++   A + L  GG F+ K F+      ++ +L+K F +V H+KP +SR
Sbjct: 129 YDSFNQNILVLSSIKLAYKFLTRGGIFITKVFRNEEYVSLIWVLEKLFTEVKHIKPRSSR 188

Query: 213 AESVEMFLLAKGF 225
             S E++L+   F
Sbjct: 189 EISSEIYLIGLNF 201


>gi|119185034|ref|XP_001243345.1| hypothetical protein CIMG_07241 [Coccidioides immitis RS]
          Length = 336

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R   D Y + A L G ++R+A+KLLQIN  ++I +  + +VDLG +PGSWSQ
Sbjct: 67  ASSKQWQARQFKDIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGSWSQ 126

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           VA  +T  N    RV+ IDI+  +P  GV   + +FL      +IR+ +  NPD
Sbjct: 127 VAVDLTHPNG---RVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFL-RNPD 176


>gi|254167682|ref|ZP_04874533.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
 gi|197623491|gb|EDY36055.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
          Length = 155

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           +DLG++PG WSQVA +I G      RV+A+DI  ++ +  V++ + D    ++ + I++ 
Sbjct: 1   MDLGAAPGGWSQVALKIVGREG---RVIAVDIKPVK-LRDVEYIRGDVYSDETLKRIKER 56

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+VLSDM+    G    DH R++ L E A F A  +L   G F+VK FQG   N 
Sbjct: 57  -AEKVDVVLSDMSPKISGISSWDHARSIDLAERALFIAENVLRERGHFVVKIFQGDMLNA 115

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L   +  F  V   KP AS  ES E++++ K F+
Sbjct: 116 YLKKCRDRFDMVKVHKPKASNRESPEIYVVCKRFK 150


>gi|312222075|emb|CBY02015.1| hypothetical protein [Leptosphaeria maculans]
          Length = 356

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           R  +  V  +    SS  W +R   D + + A+++G ++R+A+KLL++N+KH++ +  + 
Sbjct: 38  RSRSPAVSAQRASSSSTRWKSRQGKDFFAREARVQGLKSRAAFKLLELNKKHKLFKPGQT 97

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +VDLG +PGSWSQVA   T  N    RV+ IDI+  +P  GV   + +FL  +  E +R 
Sbjct: 98  VVDLGYAPGSWSQVAVNCTDPNG---RVIGIDIIPAQPPRGVSTIQGNFLSAEIQEEVR- 153

Query: 131 AIGGNPDL 138
           A   +P+L
Sbjct: 154 AYVRDPEL 161



 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 21/107 (19%)

Query: 137 DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+VLSDM+ P                     T G+   DH  +M LC AA  FA + L  
Sbjct: 236 DVVLSDMSEPWDQTTGFYKKSLSDPYFRMMNTSGNGFRDHAGSMDLCMAALTFAFDTLKT 295

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           GG FL K +QG     +   LK+ F +V   KP +SR ES E + +A
Sbjct: 296 GGHFLCKYYQGAEEKALETKLKRLFAQVCREKPDSSRNESKEAYFVA 342


>gi|293333905|ref|NP_001168052.1| hypothetical protein LOC100381782 [Zea mays]
 gi|223945719|gb|ACN26943.1| unknown [Zea mays]
          Length = 298

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+ +G+R+R+A+KLLQ++ +   L + R ++DL ++PG W QVA       A 
Sbjct: 10  QDKFYHLAKEQGYRSRAAFKLLQLDARFHFLPTARSVLDLCAAPGGWVQVAVNHAPVGAF 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGH 150
              VV +D++ + PI G      D         +R+ +  N     D+VL D + P +G 
Sbjct: 70  ---VVGVDLVPIRPIRGAHSLTEDITATKCRAAVRRLMDSNGVSAFDVVLHDGS-PNVGG 125

Query: 151 RKIDHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
                  + S L   A   A   L   G F+ K F+    N I+  LK+ F+KV   KP 
Sbjct: 126 AWAQEATSQSALVIDALRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQLFEKVEATKPT 185

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR+ S E++++   ++
Sbjct: 186 ASRSTSAEIYIICLKYK 202


>gi|297460745|ref|XP_002701220.1| PREDICTED: FtsJ homolog 1-like [Bos taurus]
          Length = 291

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R VDL ++PGSWSQV ++  G   +   VVA+D+  M P+ GV   + D   L + + I 
Sbjct: 6   RAVDLCAAPGSWSQVLSQKIGGQGSG-HVVAVDLQAMAPLPGVLQIQGDITQLSTAKEII 64

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           Q   G P DLV+ D A    G   +D      L  AA   A  +L  GG F+ K F+G  
Sbjct: 65  QHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD 124

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              I   L+  F  V+  KP +SR  S+E F + KG+
Sbjct: 125 VTLIYSQLRVFFSSVLCAKPRSSRNSSIEAFAVCKGY 161


>gi|303313694|ref|XP_003066856.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106523|gb|EER24711.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 300

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R   D Y + A L G ++R+A+KLLQIN  ++I +  + +VDLG +PGSWSQ
Sbjct: 31  ASSKQWQARQFKDIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGSWSQ 90

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           VA  +T  N    RV+ IDI+  +P  GV   + +FL      +IR+ +  NPD
Sbjct: 91  VAVDLTHPNG---RVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFL-RNPD 140


>gi|39979231|emb|CAE85601.1| probable tRNA 2'-O-ribose methyltransferase [Neurospora crassa]
          Length = 318

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 14/181 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSNAN 94
           D Y + A+ +GWRARSA+KLLQ++E+  + ++  R+VDL ++PGSWSQV +R  T +   
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFNLFENVTRVVDLCAAPGSWSQVLSRESTPAPRE 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-------NP------DLVLS 141
             ++V+ID+  + P+ G+   + D     +   + +A+         NP      DLV+S
Sbjct: 70  QVKIVSIDLQPISPLPGIITLRADITHPATVPLLLKALDPDFDPSTMNPQASHPVDLVIS 129

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+
Sbjct: 130 DGAPDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKVFFE 189

Query: 202 K 202
           K
Sbjct: 190 K 190


>gi|320032551|gb|EFW14503.1| cell division protein ftsj [Coccidioides posadasii str. Silveira]
          Length = 321

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R   D Y + A L G ++R+A+KLLQIN  ++I +  + +VDLG +PGSWSQ
Sbjct: 31  ASSKQWQARQFKDIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGSWSQ 90

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           VA  +T  N    RV+ IDI+  +P  GV   + +FL      +IR+ +  NPD
Sbjct: 91  VAVDLTHPNG---RVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFL-RNPD 140


>gi|242088869|ref|XP_002440267.1| hypothetical protein SORBIDRAFT_09g028780 [Sorghum bicolor]
 gi|241945552|gb|EES18697.1| hypothetical protein SORBIDRAFT_09g028780 [Sorghum bicolor]
          Length = 819

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA       A 
Sbjct: 10  QDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARSVLDLCAAPGGWVQVAVNHAPVGAF 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGH 150
              VV +D++ + PI G      D         +R+ +  N     D+VL D   P +G 
Sbjct: 70  ---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVSAFDVVLHD-GSPNVGG 125

Query: 151 RKIDHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
                  + S L   A   A   L   G F+ K F+    N I+  LK+ F+KV   KP 
Sbjct: 126 AWAQEATSQSALVIDALRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQFFEKVEATKPS 185

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR+ S E++++ + ++
Sbjct: 186 ASRSTSAEIYIICQKYK 202


>gi|171682198|ref|XP_001906042.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941058|emb|CAP66708.1| unnamed protein product [Podospora anserina S mat+]
          Length = 385

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 114/256 (44%), Gaps = 65/256 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN--- 92
           D Y + A+ +GWRARSA+KLLQ++E+  + ++  R+VDL ++PGSWSQV +R+   N   
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEEFNLFENVTRVVDLCAAPGSWSQVLSRVLIKNEKF 69

Query: 93  ---------------------------------------AN---------NTRVVAIDIL 104
                                                  AN         + ++V+ID+ 
Sbjct: 70  GRCAWEDREAQFRQRMLNLIPSASSQEDSQQETKQDVEMANTQDETTARPDVKIVSIDLQ 129

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAI-------------GGNP-DLVLSDMAYPTIGH 150
            + P+ GV   + D     +   + +A+               +P DLV+SD A    G 
Sbjct: 130 PISPLPGVITLRADITHPATVPLLLKALDPSYDPETSTNQQAQHPVDLVISDGAPDVTGL 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV   KP +
Sbjct: 190 HDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKVFFEKVHVAKPRS 249

Query: 211 SRAESVEMFLLAKGFR 226
           SRA SVE F++   F+
Sbjct: 250 SRASSVEAFIVCINFQ 265


>gi|72392565|ref|XP_847083.1| ribosomal RNA methyltransferase [Trypanosoma brucei TREU927]
 gi|62175581|gb|AAX69714.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei]
 gi|70803113|gb|AAZ13017.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 255

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 18/213 (8%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +    + R +VD+G SPGSW QV
Sbjct: 14  RQWMQQQSRDPFVLEARRRGYVARSAFKLLEMDDKFTLFSRGNTRVVVDIGCSPGSWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDM-EPILGVKFFKFDFLDLDSWE-----FIRQAIGGNPDL 138
                G   +   V  +D+L +   + G    + DF +    E      +     G  D+
Sbjct: 74  IRERCG---DKCAVFGVDVLRVASTVTGAVCIQGDFTNPAVREELLARMVTVRAAGVVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL----C 194
           V SDM          D  +   L  +A  FALE L  GG+F+ K     T  + L    C
Sbjct: 131 VTSDMCLNRGTGSTSDRQKQEELNRSALAFALEQLVPGGNFVCKVLGSPTAYEELRRDTC 190

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + F +    KP +SR  S E F++ +G R+
Sbjct: 191 ---RWFVRTDICKPSSSRLTSDEAFMVCRGKRE 220


>gi|32490981|ref|NP_871235.1| hypothetical protein WGLp232 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741765|sp|Q8D2X0|RLME_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|25166187|dbj|BAC24378.1| ftsJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 203

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 105/198 (53%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ H +D +V+ ++   +R+R+ +K+ +I +K+ I++    ++D+GSSPG WS+ +++ 
Sbjct: 9   WLSEHYSDKFVKESKKCKYRSRAWFKIDEIQKKNNIIKPGMVVLDIGSSPGGWSKYSSQK 68

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            G +    +V+A DI  M PI  V F   +  +  +     + +     ++L D++    
Sbjct: 69  VGMSG---KVIACDIDLMNPIPNVSFILGNIFEKIT-IKKIKKVKKKVHIILCDISPNIT 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   IDH R +SL          +L   G  ++K+F      +    ++  F+K+   KP
Sbjct: 125 GLSIIDHSRWISLNNNILNICKYLLLKNGKLIIKSFNSVEIKNFCKKIENSFKKIKIFKP 184

Query: 209 VASRAESVEMFLLAKGFR 226
           ++SR+ S E++++A  ++
Sbjct: 185 ISSRSRSKEIYIVAVNYK 202


>gi|221126837|ref|XP_002156038.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 188

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 6/179 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+  G+RARSA+KL+Q+N K   LQ +R ++DL ++PG W QVA+        
Sbjct: 12  KDKFYHLAKETGYRARSAFKLIQLNRKFAFLQESRVLIDLCAAPGGWLQVASNFM---PM 68

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI 153
           ++ ++ ID++ ++PI  V   + D       + +R+ +   + D+VL+D A P +G   +
Sbjct: 69  SSVIIGIDLVPIKPIKNVTTIQADITTDKCRQLVRKELKTWSADVVLNDGA-PNVGAAWV 127

Query: 154 -DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            D      L  +A   A E L  GG F+ K F+      +L + ++ F+KV   KP  S
Sbjct: 128 QDAFSQAQLALSALKLASEHLKRGGWFITKVFRSKDYTALLWVFQQLFKKVHATKPQVS 186


>gi|224103395|ref|XP_002313039.1| predicted protein [Populus trichocarpa]
 gi|222849447|gb|EEE86994.1| predicted protein [Populus trichocarpa]
          Length = 840

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D + + A+  G+R+R+++KL+Q++ K + LQS+R ++DL ++PG W QVA +    
Sbjct: 7   KHRLDKFYKLAKEHGYRSRASWKLIQLDTKFKFLQSSRAVLDLCAAPGGWMQVAVQRVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ ID++ + P+ G    + D    +    I++ +G +     DLVL D   P 
Sbjct: 67  ---RSLVLGIDLVKIAPLRGAVSIEQDITKPECRAKIKKIMGEHGVRAFDLVLHD-GSPN 122

Query: 148 IGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           IG     + +   SL   +   A + L   G F+ K F+    + ++  L + F+KV   
Sbjct: 123 IGGAWSQEAMAQNSLVIDSVRLATQFLAPKGTFVTKVFRSQDYSSVIYCLNQLFEKVEVD 182

Query: 207 KPVASRAESVEMFLL 221
           KP ASR+ S E+F+L
Sbjct: 183 KPAASRSASAEIFVL 197


>gi|151943675|gb|EDN61985.1| 2'O-ribose methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 320

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   NR   RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           DLG +PG+WSQVA + +  N+    ++ +DIL  EP  GV   + + L   + + IR
Sbjct: 78  DLGYAPGAWSQVARQRSSPNS---MILGVDILPCEPPHGVNSIQANILAKRTHDLIR 131



 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH +++ LC+AA   A+++L   G F+ K + G   N     ++  F  V   KP ASR 
Sbjct: 236 DHYQSIDLCDAALVTAIDLLRPLGSFVCKLYTGEEENLFKKRMQAVFTNVHKFKPDASRD 295

Query: 214 ESVEMFLLAKGFRK 227
           ES E + +  G +K
Sbjct: 296 ESKETYYI--GLKK 307


>gi|6321302|ref|NP_011379.1| Mrm2p [Saccharomyces cerevisiae S288c]
 gi|1723920|sp|P53123|MRM2_YEAST RecName: Full=Ribosomal RNA methyltransferase MRM2, mitochondrial;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase;
           Flags: Precursor
 gi|1246842|emb|CAA63360.1| G2830 [Saccharomyces cerevisiae]
 gi|1322708|emb|CAA96847.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|45270890|gb|AAS56826.1| YGL136C [Saccharomyces cerevisiae]
 gi|190407085|gb|EDV10352.1| 2'O-ribose methyltransferase [Saccharomyces cerevisiae RM11-1a]
 gi|256272222|gb|EEU07213.1| Mrm2p [Saccharomyces cerevisiae JAY291]
 gi|259146373|emb|CAY79630.1| Mrm2p [Saccharomyces cerevisiae EC1118]
 gi|285812074|tpg|DAA07974.1| TPA: Mrm2p [Saccharomyces cerevisiae S288c]
 gi|323309163|gb|EGA62390.1| Mrm2p [Saccharomyces cerevisiae FostersO]
 gi|323333646|gb|EGA75039.1| Mrm2p [Saccharomyces cerevisiae AWRI796]
 gi|323337562|gb|EGA78807.1| Mrm2p [Saccharomyces cerevisiae Vin13]
 gi|323348708|gb|EGA82950.1| Mrm2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355077|gb|EGA86907.1| Mrm2p [Saccharomyces cerevisiae VL3]
          Length = 320

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   NR   RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           DLG +PG+WSQVA + +  N+    ++ +DIL  EP  GV   + + L   + + IR
Sbjct: 78  DLGYAPGAWSQVARQRSSPNS---MILGVDILPCEPPHGVNSIQANILAKRTHDLIR 131



 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH +++ LC+AA   A+++L   G F+ K + G   N     ++  F  V   KP ASR 
Sbjct: 236 DHYQSIDLCDAALVTAIDLLRPLGSFVCKLYTGEEENLFKKRMQAVFTNVHKFKPDASRD 295

Query: 214 ESVEMFLLAKGFRK 227
           ES E + +  G +K
Sbjct: 296 ESKETYYI--GLKK 307


>gi|303283660|ref|XP_003061121.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457472|gb|EEH54771.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 197

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N K+      R  +DL ++PG W QVA +    ++  
Sbjct: 1   DKFYYLAKEQGFRSRAAFKLVQLNRKYDFFSGARACMDLCAAPGGWLQVAVKYMPMSST- 59

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRKI 153
             +V +D+  ++ I G   F  D         +++    G   D+V+ D A    G+   
Sbjct: 60  --IVGVDLAPIKAIRGCTTFVDDITTQSCRAQLKRVTPDGVKYDVVMHDGAPNVGGNFAA 117

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           +     +L   +   A E L  GG F+ K F+    + +L  +++ F+KV   KPVASR 
Sbjct: 118 ESYTQAALTLDSLRLATEFLREGGWFVTKVFRSTEYHALLYSMQQLFKKVESTKPVASRG 177

Query: 214 ESVEMFLLAKGF 225
            S E++++  G+
Sbjct: 178 TSAEIYVVCIGY 189


>gi|102139739|gb|ABF69946.1| FtsJ-like methyltransferase family protein [Musa acuminata]
          Length = 847

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 7/191 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+ +G+R+R+A+KLLQ++ K++ L S R I+DL ++PG W QVA R       
Sbjct: 10  QDKFYYLAKEQGYRSRAAFKLLQLDAKYRFLPSARSILDLCAAPGGWLQVAVR---HAPV 66

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGH 150
            + V+ +D+  + P+ G      D         I++ +  N     D+VL D +    G 
Sbjct: 67  GSFVIGVDLFPIRPVRGAHALVEDITTPRCRAAIKRLMDSNGCSAFDVVLHDGSPNVGGA 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              +     SL   +   A   L   G F+ K F+    + I+  LK+ F+KV   KPVA
Sbjct: 127 WAQEATSQSSLVVDSVRLATNFLAPKGTFVTKVFRSQDYSAIIYCLKQLFEKVEVTKPVA 186

Query: 211 SRAESVEMFLL 221
           SR+ S E++++
Sbjct: 187 SRSTSAEIYVI 197


>gi|207345420|gb|EDZ72247.1| YGL136Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 182

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   NR   RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           DLG +PG+WSQVA + +     N+ ++ +DIL  EP  GV   + + L   + + IR
Sbjct: 78  DLGYAPGAWSQVARQRSSP---NSMILGVDILPCEPPHGVNSIQANILAKRTHDLIR 131


>gi|270667884|ref|ZP_06222474.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
 gi|270316776|gb|EFA28530.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
          Length = 143

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 6/145 (4%)

Query: 71  IVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDLG++PG WSQ V ++I G      RV+A DIL+M PI+GV F + DF D +    + 
Sbjct: 3   VVDLGAAPGGWSQYVVSQIGGKG----RVIACDILEMAPIVGVDFLQGDFRDENVLNALL 58

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             +G +  D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG  
Sbjct: 59  ARVGEDKVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEG 118

Query: 189 TNDILCLLKKHFQKVIHVKPVASRA 213
            ++ L   +  F  V   KP ASR 
Sbjct: 119 FDEYLRETRSLFNVVKVRKPEASRG 143


>gi|225717424|gb|ACO14558.1| ribosomal RNA methyltransferase CG11447 [Caligus clemensi]
          Length = 171

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 6/121 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++AQ EG+RARSAYKLL+INEK +IL+    +++ G +PGSW+QV 
Sbjct: 48  SSSWIRRQSKDIYVKKAQSEGYRARSAYKLLEINEKFKILRPKMTVMECGGAPGSWTQVL 107

Query: 86  ARITGSNANNTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDM 143
            +      ++  V++ D+LD +P+   +   + DF    + + I   +  +  DLVLSDM
Sbjct: 108 TQ----KVHSGEVISCDLLDYDPVDHAIILPQSDFTLPQTQDIILGHLKADGFDLVLSDM 163

Query: 144 A 144
           A
Sbjct: 164 A 164


>gi|302914138|ref|XP_003051077.1| hypothetical protein NECHADRAFT_41834 [Nectria haematococca mpVI
           77-13-4]
 gi|256732015|gb|EEU45364.1| hypothetical protein NECHADRAFT_41834 [Nectria haematococca mpVI
           77-13-4]
          Length = 309

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 68/248 (27%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAAR 87
           W  R   D Y + A+++G ++R+A+KLL+++ K+++ ++N + +VDLG +PGSWSQVA  
Sbjct: 34  WKQRQGRDAYARNAKVQGLKSRAAFKLLEMDAKYRLFKNNGQTVVDLGYAPGSWSQVAVD 93

Query: 88  ITGSNANNTRVVAIDILDMEPILG----------------VKFFKFD------------- 118
            T  +    RV+ ID++  +P  G                VK F  D             
Sbjct: 94  RTRPHG---RVIGIDLIPAQPPQGVATFQGDFLSPNVQGMVKNFILDTHKRPPPLQHEAE 150

Query: 119 --------FLDLDSWEFI---RQAIG--GNPDLVLSDMAYP------------------- 146
                     ++D   +I   R A    G+P+    DM+ P                   
Sbjct: 151 TSDSDEVEVSEIDRPSYIDMERHASSESGSPE-ASDDMSAPWDQTSGFYVNSLSNPYNRL 209

Query: 147 --TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G+   DH  +M LC AA  FA + L  GG F+ K +QG    +    LK  F KV 
Sbjct: 210 MNTSGNAFRDHAGSMDLCAAALQFASDTLKSGGHFVCKFYQGPEDKEFEKKLKTLFVKVF 269

Query: 205 HVKPVASR 212
             KP +SR
Sbjct: 270 REKPESSR 277


>gi|323304989|gb|EGA58743.1| Mrm2p [Saccharomyces cerevisiae FostersB]
          Length = 320

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   NR   RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           DLG +PG+WSQVA + +  N+    ++ +DIL  EP  GV   + + L   + + IR
Sbjct: 78  DLGYAPGAWSQVARQRSXPNS---MILGVDILPCEPPHGVNSIQANILAKRTHDLIR 131



 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH +++ LC+AA   A+++L   G F+ K + G   N     ++  F  V   KP ASR 
Sbjct: 236 DHYQSIDLCDAALVTAIDLLRPLGSFVCKLYTGEEENLFKKRMQAVFTNVHKFKPDASRD 295

Query: 214 ESVEMFLLAKGFRK 227
           ES E + +  G +K
Sbjct: 296 ESKETYYI--GLKK 307


>gi|158290286|ref|XP_311882.4| AGAP003002-PA [Anopheles gambiae str. PEST]
 gi|157017821|gb|EAA07890.4| AGAP003002-PA [Anopheles gambiae str. PEST]
          Length = 868

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+R+A+KL+Q+N +   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYKLAKESGYRSRAAFKLIQLNRRFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI- 153
           + V+ +D+  ++ + G      D   D    +  ++      D+VL+D A P +G   + 
Sbjct: 70  SIVIGVDLYPIKNVPGCISLIGDITSDKTKADLAKELKTWKVDVVLNDGA-PNVGKNWLH 128

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP ASR 
Sbjct: 129 DAYQQVCLTLSAVKLATQFLRPGGWFITKVFRSKDYNALIWVLKQLFRKVHATKPSASRK 188

Query: 214 ESVEMFLLAKGFR 226
           ES E+F++ + ++
Sbjct: 189 ESAEIFVVCQYYK 201


>gi|51854285|gb|AAU10666.1| unknown protein [Oryza sativa Japonica Group]
          Length = 749

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA      
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
            A    VV +D++ + PI G      D         +R+ +  N     D+VL D +   
Sbjct: 67  GAF---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     SL   A   A   L   G F+ K F+    N I+  LK+ F+KV   K
Sbjct: 124 GGAWAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQLFEKVEVTK 183

Query: 208 PVASRAESVEMFLL 221
           P ASR+ S E++++
Sbjct: 184 PTASRSTSAEIYII 197


>gi|115465501|ref|NP_001056350.1| Os05g0567400 [Oryza sativa Japonica Group]
 gi|113579901|dbj|BAF18264.1| Os05g0567400 [Oryza sativa Japonica Group]
          Length = 819

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 7/191 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA       A 
Sbjct: 10  QDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPVGAF 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGH 150
              VV +D++ + PI G      D         +R+ +  N     D+VL D +    G 
Sbjct: 70  ---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGA 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              +     SL   A   A   L   G F+ K F+    N I+  LK+ F+KV   KP A
Sbjct: 127 WAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQLFEKVEVTKPTA 186

Query: 211 SRAESVEMFLL 221
           SR+ S E++++
Sbjct: 187 SRSTSAEIYII 197


>gi|1749628|dbj|BAA13871.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 173

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 16/165 (9%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS----WE 126
           ++D+G +PGSWSQVA ++ G   N  +V+ IDI  + P  GV     D  D ++    +E
Sbjct: 7   VIDVGFAPGSWSQVAKKLVG---NKGKVIGIDIQHIAPPEGVLPIYGDIRDPNTLTKLFE 63

Query: 127 FIRQAIGGNP---------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            +R     N          D V+SDM +   G R  DH  +M LC +A   AL  L   G
Sbjct: 64  ALRLLHEPNTNDSIDCRVVDAVISDMLHKATGIRIRDHALSMELCASALHVALTFLKSNG 123

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
            F+ K + G    D+  LLK HF+ V  +KP AS  ES E + + 
Sbjct: 124 SFICKFYMGDEDADLQNLLKSHFRFVQVMKPKASLKESREAYFVC 168


>gi|71006594|ref|XP_757963.1| hypothetical protein UM01816.1 [Ustilago maydis 521]
 gi|46097464|gb|EAK82697.1| hypothetical protein UM01816.1 [Ustilago maydis 521]
          Length = 346

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 107/263 (40%), Gaps = 73/263 (27%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQIL------------------------------ 65
           D Y ++ + EG+RARSAYKLL +NE++  L                              
Sbjct: 10  DIYYRQGKSEGYRARSAYKLLHLNEQYGFLGGAEDYALDAGAASTCASSSDSANAPKTTS 69

Query: 66  ----QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
               Q+  R+VDL ++PGSWSQV +R   S    + +VA+D+  M P+ GV     D   
Sbjct: 70  EKRFQTPTRVVDLCAAPGSWSQVLSRRLAS-VPGSHLVAVDLQAMAPLPGVTQIIGDITT 128

Query: 122 LDSWEFIRQAIGGNP-----------------DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
             + + +  A+   P                  L++ D A    G   +D      L  A
Sbjct: 129 PATADAVSTALSDGPLSNSTCVKGKGKGKARAQLIVCDGAPDVTGLHDLDEYLQSQLLLA 188

Query: 165 ATFFALEMLNIGGDFLVKTF----QGG----------------TTNDILC-LLKKHFQKV 203
           AT     +L IGG F+ K F    Q G                T+  +L   L+  F +V
Sbjct: 189 ATQITFRLLEIGGTFVAKIFTQHPQAGLGASLGNMDLKAARPATSGALLADQLRTFFDRV 248

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  SVE FL+  GF+
Sbjct: 249 DIAKPRSSRLGSVEHFLVCLGFK 271


>gi|149028399|gb|EDL83784.1| rCG22889, isoform CRA_a [Rattus norvegicus]
          Length = 131

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 73/115 (63%), Gaps = 2/115 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
             ++  +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A
Sbjct: 65  GQSSG-QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGA 118


>gi|164656501|ref|XP_001729378.1| hypothetical protein MGL_3413 [Malassezia globosa CBS 7966]
 gi|159103269|gb|EDP42164.1| hypothetical protein MGL_3413 [Malassezia globosa CBS 7966]
          Length = 902

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K+  L++    +DL ++PG W QVA++       N
Sbjct: 14  DKFYWLAKEQGYRSRAAFKLVQLNKKYNFLENAHCCIDLCAAPGGWLQVASKHMPP---N 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
           + ++ +D++ ++PI     F  D       E +++ +     D+VL D A P +G   + 
Sbjct: 71  SLILGVDLVAIKPIPRCITFAEDINSYRCREQLQEHMKDWKADVVLHDGA-PNVGTAWVQ 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A+E L  GG F+ K F+    N+++ + ++ F  V   KP +SR 
Sbjct: 130 DAYAQNELTLQSLRLAVEFLVPGGTFVTKVFRSKDYNNLMWVFQQLFHHVEATKPPSSRN 189

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ + F+
Sbjct: 190 VSAEIFVVCQRFK 202


>gi|162450262|ref|YP_001612629.1| hypothetical protein sce1990 [Sorangium cellulosum 'So ce 56']
 gi|189040342|sp|A9FQE4|RLME_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|161160844|emb|CAN92149.1| rrmJ [Sorangium cellulosum 'So ce 56']
          Length = 212

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 8/188 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+ ARS +KL +I+ + ++L+  +R++DLG++PGSWS  AA+  G+    
Sbjct: 20  DAFTKAAKAQGYPARSVFKLEEIDRRVRLLRPGQRVLDLGAAPGSWSMYAAQRIGAGG-- 77

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG--GNPDLVLSDMAYPTIGHRKI 153
            +++A+   D+ PI      +   +  D+     +A+      D+VLSDMA  T G +  
Sbjct: 78  -KLLAV---DLSPITAAFGPQATVVQGDALSLTNEALAQFAPYDVVLSDMAPATSGSKIA 133

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R+  L   A   A  +L  GG F+ K F           L+   ++V  ++P  +RA
Sbjct: 134 DQARSYELFMRAVAVAEALLAPGGAFVGKIFMSEDFVKARDALRNLCEEVRSIRPEGTRA 193

Query: 214 ESVEMFLL 221
            SVE+FL+
Sbjct: 194 SSVEIFLV 201


>gi|171463556|ref|YP_001797669.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193094|gb|ACB44055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 170

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 83/167 (49%), Gaps = 14/167 (8%)

Query: 74  LGSSPGSWSQVA----ARITGSNAN------NTRVVAIDILDMEPILGVKFFKFDFLD-- 121
           +GS+PGSWSQ A      +  SN        + +++AIDIL ME I  V F + DF +  
Sbjct: 1   MGSAPGSWSQYARNRLIELGKSNPKIESGKPDGQIIAIDILPMEDIADVSFIQGDFREEE 60

Query: 122 -LDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            L + E  + +   G  DLVLSDMA    G    D  R   L E A  FA+  L   G  
Sbjct: 61  GLAALEALLPKGAEGKVDLVLSDMAPNLSGVEVADAARMAFLAEIALDFAVAHLKPEGAL 120

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+K F G   + I+   KK F+ V   KP ASRA   E+FLL +  +
Sbjct: 121 LIKCFNGSGYSQIVESFKKVFKTVASRKPKASRARFSEIFLLGRNLK 167


>gi|148702025|gb|EDL33972.1| Ftsj homolog 1 (E. coli), isoform CRA_a [Mus musculus]
          Length = 131

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 2/110 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
            +VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A
Sbjct: 70  -QVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGA 118


>gi|159466440|ref|XP_001691417.1| hypothetical protein CHLREDRAFT_183158 [Chlamydomonas reinhardtii]
 gi|158279389|gb|EDP05150.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 254

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 30/222 (13%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  +  +D Y + A+  G+ +R+AYKLL+I +KH+I++    ++DLG SPG+W QVA + 
Sbjct: 28  WTKKVQHDHYFKEAKKAGYVSRAAYKLLEIQDKHKIIKQGGTVLDLGCSPGAWLQVACQQ 87

Query: 89  TGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
            G       V+ +DI   +P+          V+  + D   L        A GG  D VL
Sbjct: 88  IGPRERGGTVLGVDI---QPVTVPERFCDARVRVMQADARTLPPSLLAEYAPGGF-DTVL 143

Query: 141 SDMAYPTIGHRKID----------HLRT--------MSLCEAATFFALEMLNIGGDFLVK 182
           SDM   T G   ++          H+ T         +  +   F     L  GG  ++K
Sbjct: 144 SDMLQFTSGVNDVELSLELAGTALHIATGYHFDVYGEAYVQQVGFRHTGFLRPGGALVMK 203

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            ++G    + +  ++++F KV+ ++  ASR+ S E + +  G
Sbjct: 204 VYEGTGVTEFVRDMQRYFTKVVRMRVDASRSMSREFYAVGLG 245


>gi|68074303|ref|XP_679066.1| methyltransferase [Plasmodium berghei strain ANKA]
 gi|56499717|emb|CAH95392.1| methyltransferase, putative [Plasmodium berghei]
          Length = 978

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 9/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN- 94
           D Y + A+  G+RARSA+KL+QI  K+ I ++   ++DL ++PG W QVA +    N N 
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIARKYNIFKNANILIDLCAAPGGWLQVAYK----NMNK 68

Query: 95  NTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR- 151
           N+ ++ +D++ +  I   V   K D    +  + I+  I     D++L+D A P +G   
Sbjct: 69  NSTIIGVDLVPIRKIDNNVITIKSDITSAECIKKIKDIIQYEKADVILNDGA-PNVGTTY 127

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D      L  ++   A + L  GG F+ K F+      ++ +L+K F +V H+KP +S
Sbjct: 128 SYDSFNQNILVLSSIKLAYKFLTKGGIFITKVFRNEEYVSLIWVLEKLFGEVKHIKPRSS 187

Query: 212 RAESVEMFLLAKGF 225
           R  S E++L+   F
Sbjct: 188 REISSEIYLIGLNF 201


>gi|219110463|ref|XP_002176983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411518|gb|EEC51446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 315

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 36/233 (15%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---------------RRIVDL 74
           L+R   D + + A+ +G+RARSA+KLLQ++ +  I  +                +R VDL
Sbjct: 4   LSRDKRDVFYRLAKEKGYRARSAFKLLQVDAEFDIFGARGAPASLGNTIEPLRVQRAVDL 63

Query: 75  GSSPGSWSQV----------AARITGSNANNT----------RVVAIDILDMEPILGVKF 114
            ++PGSWSQV          A    G+N++             +VA+D+  M PI GV  
Sbjct: 64  CAAPGSWSQVLSDKLYELNHATGDAGANSDQALDIDEQPEEPSIVAVDLQPMAPIDGVLC 123

Query: 115 FKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            + D     + + I +   GN  +LV+ D A    G   +D      L  +A      +L
Sbjct: 124 LQGDITAQSTAQDIIKHFQGNRAELVVCDGAPDVTGLHDVDEYLQGQLLLSAMMITTHVL 183

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              G F+ K F+G     +   L+  F++V   KP +SR  S+E F++ + F+
Sbjct: 184 CERGTFVAKIFRGRNVGFLYAQLRLLFERVSIAKPTSSRNSSMESFVVCQRFK 236


>gi|315427580|dbj|BAJ49179.1| ribosomal RNA large subunit methyltransferase E FtsJ [Candidatus
           Caldiarchaeum subterraneum]
          Length = 224

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +   WL R   DPY ++A+  G+ +R+A+KLL+I  + +I++  +R++DLG++PG  + V
Sbjct: 2   TKEQWLQRRREDPYWRKAKEMGYPSRAAFKLLEIQSRWKIIREGQRVLDLGAAPGGMAAV 61

Query: 85  AARITGSNANNTRVVAIDILDMEPIL----GVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           A+ I G       VVA+   D EP+      +   + D  +      ++ A+G    D+V
Sbjct: 62  ASDIVGEKGL---VVAV---DREPLQLTRPNIVTIQADIYEARLTRDVQTALGEEFCDVV 115

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SD++    G   +   + + L EA+       L  GG+ + K F+     D    + + 
Sbjct: 116 VSDLSPHHSGDYDLLVEQQIDLLEASLNLCHRFLRRGGNAVFKAFEHPRLRDFEKRMMRC 175

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV    P +++  S E+FLL  G+R
Sbjct: 176 FWKVERYVPRSTKKGSSEIFLLGLGYR 202


>gi|168007294|ref|XP_001756343.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692382|gb|EDQ78739.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 844

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+++KL+Q++ K Q L S R ++DL ++PG W QV ++   +    
Sbjct: 13  DRFYYLAKEQGFRSRASFKLVQLDRKFQFLSSARSVLDLCAAPGGWMQVCSK---NMPVG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGHR 151
           + ++ ID++ + PI G    + D         I++ +         +VL D +    G  
Sbjct: 70  SLIIGIDLVPIRPIRGCVTLQEDITTPQCRAAIKKVLKEKKHDMVQVVLHDGSPNVGGAW 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             +     +L   +   A ++L  GG F+ K F+    N +L   K+ F+KV   KP+AS
Sbjct: 130 SSESSAQTALVLDSLKLATDVLCPGGTFVTKIFRSQDYNALLFAFKQLFEKVEVTKPIAS 189

Query: 212 RAESVEMFLLAKGFR 226
           RA S E++++ + +R
Sbjct: 190 RATSAEIYVICQKYR 204


>gi|254583025|ref|XP_002499244.1| ZYRO0E07370p [Zygosaccharomyces rouxii]
 gi|238942818|emb|CAR30989.1| ZYRO0E07370p [Zygosaccharomyces rouxii]
          Length = 311

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 81/144 (56%), Gaps = 8/144 (5%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR- 69
           RG+++ + +       R WL+R  ND Y + A+++G R+R+A+KL+++++K  + Q ++ 
Sbjct: 14  RGVSRPLGHFRFNSQGR-WLDRQSNDHYTKEAKVQGLRSRAAFKLMELDDKFHLFQGDKH 72

Query: 70  ---RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
              R++DLG +PG+WSQVA R  G N     V+ +DIL  EP  GV   + + L   + E
Sbjct: 73  KHQRVLDLGFAPGAWSQVAQRRIGPNG---MVLGVDILPCEPPKGVHSIQANILSRKTHE 129

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGH 150
            IR     +  L  SD  +   G+
Sbjct: 130 LIRLYFSRHFQLYKSDHLHEHHGY 153



 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH +++ L +AA   A+++L   G+F+ K + G         L+K FQ+V   KP +SR 
Sbjct: 228 DHYQSIDLADAALVTAIDLLRPRGNFVCKLYTGKEDKLFEKRLRKVFQRVNRFKPASSRG 287

Query: 214 ESVEMFLLAKG 224
           ES E++ +  G
Sbjct: 288 ESKELYFIGLG 298


>gi|170591144|ref|XP_001900330.1| protein R74.7 [Brugia malayi]
 gi|158591942|gb|EDP30544.1| protein R74.7, putative [Brugia malayi]
          Length = 207

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT-----G 90
           D Y + A+ EGWRARSA+KL+QI+++  I +   R+VDL ++PGSWSQV ++        
Sbjct: 10  DIYYRLAKEEGWRARSAFKLMQIDDEFNIFEGVHRVVDLCAAPGSWSQVLSKKVYFAQDE 69

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 R+VA+D+  M P+ G+   + D  +   + + I    G   DLV+ D A    G
Sbjct: 70  KERKAVRIVAVDLQPMSPLPGIIQLQGDITEACTAKKIISYLEGSKADLVICDGAPDVTG 129

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
              +D      L  A    A  +L   G F+ K F+      +   LK   ++V   KP
Sbjct: 130 LHALDEYMQSQLVLAPLNIATFVLKEAGTFVAK-FRTRDITLLYAQLKIFSKEVYCTKP 187


>gi|326435959|gb|EGD81529.1| tRNA 2'-O-ribose methyltransferase [Salpingoeca sp. ATCC 50818]
          Length = 216

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSNAN 94
           D Y + A+ +GWRARSA+KLLQ++ +  +    +++VDL ++PGSWSQV  R +      
Sbjct: 10  DVYYRLAKEQGWRARSAFKLLQLDTQFDLFSGVKKVVDLCAAPGSWSQVLQRKLKPQEDE 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
           + +VVA+D+  M P+ G+   + D   +  +   +    G   DLV+ D A    G   I
Sbjct: 70  DVKVVAVDLQAMAPLDGIIQMQGDITKESTATAIVDHFEGEKADLVICDGAPDVTGLHDI 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           D      L  AA      +L  GG F+ K  +
Sbjct: 130 DEYVQAQLLLAALNITTHVLKPGGTFVAKACE 161


>gi|323450630|gb|EGB06510.1| hypothetical protein AURANDRAFT_5019 [Aureococcus anophagefferens]
          Length = 180

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 3/182 (1%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           ++A+ E +RARSAYKL+ ++++  +L +  R+VDL ++PGSW QV  R   + A    VV
Sbjct: 2   RKAKEEKFRARSAYKLMDVDDEFHLLANAARVVDLCAAPGSWCQVLRRRCPAGAA---VV 58

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           A+D+  M P+ GV   + D    ++   +  A GG  D+V+ D A    G   +D     
Sbjct: 59  AVDLQPMAPLDGVVVLRGDITTPETAAAVVAAAGGPADVVVCDGAPEVTGVHDVDEFAHA 118

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           SL  AA   A  +L  GG F+ K F+      +   L+  F  V   KP +SR  SVE F
Sbjct: 119 SLMAAAAALAARLLRPGGAFVAKLFRCTDAALVEAQLRCLFVDVDVRKPASSRDRSVEAF 178

Query: 220 LL 221
           ++
Sbjct: 179 VV 180


>gi|315425613|dbj|BAJ47272.1| ribosomal RNA large subunit methyltransferase E FtsJ [Candidatus
           Caldiarchaeum subterraneum]
          Length = 224

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 5/204 (2%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +   WL R   DPY ++A+  G+ +R+A+KLL+I  + +I++  +R++DLG++PG  + V
Sbjct: 2   TKEQWLQRRREDPYWRKAKEMGYPSRAAFKLLEIQSRWKIIREGQRVLDLGAAPGGMAAV 61

Query: 85  AARITGSNANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
           A+ I G       VVA+D   ++     +   + D  +      ++ A+G    D+V+SD
Sbjct: 62  ASDIVGEKGL---VVAVDRQPLQLTRPNIVTIQADIYEARLTRDVQTALGEEFCDVVVSD 118

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           ++    G   +   + + L EA+       L  GG+ + K F+     D    + + F K
Sbjct: 119 LSPHHSGDYDLLVEQQIDLLEASLNLCHRFLRRGGNAVFKAFEHPRLRDFEKRMMRCFWK 178

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V    P +++  S E+FLL  G+R
Sbjct: 179 VERYVPRSTKKGSSEIFLLGLGYR 202


>gi|330038977|ref|XP_003239752.1| SAM-dependent methyltransferase [Cryptomonas paramecium]
 gi|327206677|gb|AEA38854.1| SAM-dependent methyltransferase [Cryptomonas paramecium]
          Length = 297

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 6/182 (3%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           +R+R+A+KL++I+ K    +    ++DL S+PGSW QV+ ++T  +     +V ID+  +
Sbjct: 21  FRSRAAFKLIEIDNKFHFFKKAVGVLDLCSAPGSWMQVSRKLTQLH---IPIVGIDLCKI 77

Query: 107 EPILGVKFFKFD---FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           + I G  F   D   +   +S   I +  G   +++L D +         D  +   L  
Sbjct: 78  KKIHGCVFVNGDITSYYCFNSVLKIIKNFGLTFNIILHDGSPRAEIKWLSDVYKQNKLVL 137

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            A  F  +ML   G F+ K F+    N +L  LK +F K+  +KP+ASR ESVE++++ K
Sbjct: 138 YAFKFTHKMLCPNGWFVTKIFKSKYFNGLLFFLKSYFGKIFILKPIASRKESVEIYIICK 197

Query: 224 GF 225
            F
Sbjct: 198 KF 199


>gi|71668248|ref|XP_821060.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886427|gb|EAN99209.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 390

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 65/256 (25%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAAR----- 87
           D Y ++A+ EG+RARSAYKLLQ++E+  IL  +     +V L ++PGSWSQ+ AR     
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQLHEEFNILNRDEIQTGVVVLCAAPGSWSQLLARHLREE 69

Query: 88  ITGSNANNT----RVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR------------- 129
           + G     +    R+VA+D+ +M PI GV+  + D   +  + E IR             
Sbjct: 70  VGGRTEKQSLGAPRIVAVDLQEMMPIEGVQLLQGDITSEATAREIIRLLNIKEDTASVND 129

Query: 130 --------------------------QAIGG-------------NPDLVLSDMAYPTIGH 150
                                      A GG               DLV+ D A    G 
Sbjct: 130 AYVDSEEDKSAIQTDKGGRSTARRPSLAPGGRNSYSDHTNSCEKKADLVVCDGAPDVTGM 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            ++D      L  AA      +L  GG F+ K F+G  T  ++   +  F+ VI  KP +
Sbjct: 190 HELDEYLQHHLLLAALNITTFVLRCGGTFVTKIFRGPNTPFLVAKSEVFFRHVIIAKPRS 249

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S+E F++ + ++
Sbjct: 250 SRNASMEAFMVCQDYQ 265


>gi|312076873|ref|XP_003141055.1| hypothetical protein LOAG_05470 [Loa loa]
 gi|307763781|gb|EFO23015.1| hypothetical protein LOAG_05470 [Loa loa]
          Length = 335

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 22/196 (11%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT-----G 90
           D Y + A+ EGWRAR+ +                R+VDL ++PGSWSQV ++        
Sbjct: 10  DIYYRLAKEEGWRARNVH----------------RVVDLCAAPGSWSQVLSKKVYFAEDE 53

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
               + R+VA+D+  M P+ GV   + D  +  + E I     G   DLV+ D A    G
Sbjct: 54  GRRKDIRIVAVDLQPMSPLPGVIQLQGDITETSTAEKIISYFEGLKADLVVCDGAPDVTG 113

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L   G F+ K F+      +   LK  F++V   KP 
Sbjct: 114 LHALDEYMQSQLVLAALNIATFVLKETGTFVAKVFRARDITLLYAQLKIFFKEVYCAKPR 173

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E F++ K F
Sbjct: 174 SSRQSSCEAFVVCKEF 189


>gi|297709883|ref|XP_002831647.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
           methyltransferase 1-like [Pongo abelii]
          Length = 186

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G   + 
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSG 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
             VVA+D+  M P+ GV   + D   L + + I Q   G P DLV+ D A
Sbjct: 70  -HVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGA 118


>gi|254670625|emb|CBA06622.1| cell division protein [Neisseria meningitidis alpha153]
          Length = 127

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTM 159
           +DIL ME I GV F + DF + D        +   P DLV+ DMA    G+   D +R+ 
Sbjct: 1   MDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQVRSF 60

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LCE A  FA + L  GG FLVK FQG    + +  +++ F  V   KP ASR  S E++
Sbjct: 61  YLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIY 120

Query: 220 LLAKGFR 226
           LL K  R
Sbjct: 121 LLGKNKR 127


>gi|297180940|gb|ADI17143.1| 23S rRNA methylase [uncultured gamma proteobacterium HF0070_08D07]
          Length = 209

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 11/203 (5%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ-VAAR 87
           W      D ++++AQ  G  +R+ +KL +++ K  +L+  + I++LG++PG W + +  +
Sbjct: 10  WRRSQREDFFLKKAQGRGLVSRAYFKLQELDAKFDLLKPKQSILELGAAPGGWVRYIEDK 69

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSW---EFIRQAIGGNPDLVLSDM 143
           ++G   +    +A+D     P+      K       + W   E  R       DLVLSDM
Sbjct: 70  LSG---DENLYIAVD---PSPVKSSGLAKIISGKSNEPWVSQEIERILESKKLDLVLSDM 123

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G R +D + +  L E A   A+  L  GG  + K FQG      +   ++ F K 
Sbjct: 124 APNISGVRVVDDIASRELAEVALNTAVNYLAPGGRMVAKLFQGPEAQSFMEEAQECFLKS 183

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           +  KP ASR ES E+F++A  F+
Sbjct: 184 VLFKPAASRPESREVFVVADSFK 206


>gi|316973066|gb|EFV56698.1| putative ribosomal RNA large subunit methyltransferase J
           [Trichinella spiralis]
          Length = 633

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 13/200 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+R+R+A+KL+ +N+K Q L+ +  +VDL ++PG W QVA++       +
Sbjct: 12  DKYYNLAKQAGYRSRAAFKLVHLNKKFQFLEKSTCLVDLCAAPGGWLQVASQYMPV---S 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-KI 153
             ++ +D++ ++ +  V   + D         I++ +     D VL D   P +G     
Sbjct: 69  RLIIGVDLVSIKALHNVITLQNDITTESCLSQIKRELKTWTADCVLHD-GSPNVGKNWNH 127

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV------IHV- 206
           D  +   L   A   A  +L  GG F+ K F+      ++ ++KK F KV      +HV 
Sbjct: 128 DAFQQAQLTLHALRLASAILRPGGWFVTKLFRSKDHPTLVNVMKKLFNKVKLAGKKVHVT 187

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP ASR ES E++ + +GF+
Sbjct: 188 KPQASRQESAEIYAVCQGFK 207


>gi|164659960|ref|XP_001731104.1| hypothetical protein MGL_2103 [Malassezia globosa CBS 7966]
 gi|159105002|gb|EDP43890.1| hypothetical protein MGL_2103 [Malassezia globosa CBS 7966]
          Length = 172

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 7/140 (5%)

Query: 29  WLNRHINDPYVQ--RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           +L+R  +D +V+  +A   G+ +RSAYKL+Q++ K+   Q  R +VDLG++PG WSQ   
Sbjct: 29  YLSRQRHDQFVRDRKADGTGYVSRSAYKLVQLSTKYPFFQPGRVVVDLGAAPGGWSQAVL 88

Query: 87  RITGSNANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           +         RV A+D+L ++  L  + F + DF D      +   IG + D+VLSDM  
Sbjct: 89  Q----QCPKARVYALDLLPLQTSLPNLTFMRGDFRDTQVRTSLSSLIGQDVDVVLSDMMA 144

Query: 146 PTIGHRKIDHLRTMSLCEAA 165
            T G+   D   ++ LC AA
Sbjct: 145 NTSGNSIRDTQASLDLCMAA 164


>gi|297799420|ref|XP_002867594.1| AT4g25730/F14M19_10 [Arabidopsis lyrata subsp. lyrata]
 gi|297313430|gb|EFH43853.1| AT4g25730/F14M19_10 [Arabidopsis lyrata subsp. lyrata]
          Length = 821

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S+  ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSSHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  ---GSLVLGIDLVPILPVRGCVTMTQDITRSECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K F+    N +L  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLITKVFRSRDYNAVLYCLGRLFEKVEVFK 183

Query: 208 PVASRAESVEMFLL 221
           P ASR+ S E +L+
Sbjct: 184 PPASRSASAETYLV 197


>gi|17381234|gb|AAL36036.1| AT4g25730/F14M19_10 [Arabidopsis thaliana]
          Length = 821

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S   ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  ---GSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K F+    N +L  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVEVFK 183

Query: 208 PVASRAESVEMFLL 221
           P ASR+ S E +L+
Sbjct: 184 PPASRSASAETYLV 197


>gi|22328933|ref|NP_194303.2| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|332659706|gb|AEE85106.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
          Length = 821

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S   ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  ---GSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K F+    N +L  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVEVFK 183

Query: 208 PVASRAESVEMFLL 221
           P ASR+ S E +L+
Sbjct: 184 PPASRSASAETYLV 197


>gi|196011812|ref|XP_002115769.1| hypothetical protein TRIADDRAFT_59807 [Trichoplax adhaerens]
 gi|190581545|gb|EDV21621.1| hypothetical protein TRIADDRAFT_59807 [Trichoplax adhaerens]
          Length = 807

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 14/177 (7%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           + + A+  G+RARSA+KL+Q+N K Q L+++R +VDL ++PG W QVA+R    ++    
Sbjct: 15  FYKLAKETGYRARSAFKLIQLNRKFQFLETSRVLVDLCAAPGGWLQVASRFMPISS---L 71

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRK 152
           +V +D++ ++PI  V     D     + +  +QAI         D VL D A P +G   
Sbjct: 72  IVGVDLVTIKPIPNVITLTGDI----TTDACKQAIKKELHTWKADSVLHDGA-PNVGQAW 126

Query: 153 I-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           + D      L  +A   A ++L  GG F+ K F+      ++ + ++ F+KV   KP
Sbjct: 127 VQDAFSQAQLTLSALRLACQLLKRGGCFITKVFRSKDYYSLMWVFQQLFKKVHATKP 183


>gi|322699567|gb|EFY91328.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Metarhizium acridum
           CQMa 102]
          Length = 430

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 113/273 (41%), Gaps = 82/273 (30%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINE-------------------KHQILQSNRRIVDLGS 76
           D Y + A+ +GWRARSA+KLLQ++E                   +  +  +  R+VDL +
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEGPSRLPPPSSPVTPRLTSPEFNLFANVSRVVDLCA 69

Query: 77  SPGSWSQVAARITGSNA------------------------------------------- 93
           +PGSWSQV +R+   N                                            
Sbjct: 70  APGSWSQVLSRVLIENEQFGLRSWQDGEAHLRRSMLSVLPASTTPGGKEAVEAAIAAQHA 129

Query: 94  -----NNTRVVAIDILDMEPILGVKFFKFDF------------LD--LDSWEFIRQAIGG 134
                ++ ++VAID+  + P+ G+   + D             LD   D+     +    
Sbjct: 130 ASRPRDDVKIVAIDLQPISPLAGITTLQADITHPATVPLLLGALDPGYDAQRAAAEGKAS 189

Query: 135 NP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           +P DLVLSD A    G   +D      L  AA   AL +L  GG F+ K F+G   + + 
Sbjct: 190 HPVDLVLSDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLY 249

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK  F++V+  KP +SRA S+E F++   FR
Sbjct: 250 AQLKIFFERVVVAKPRSSRASSMEAFIVCLNFR 282


>gi|148236585|ref|NP_001080816.1| FtsJ homolog 1 [Xenopus laevis]
 gi|29124411|gb|AAH49003.1| Ftsj1-prov protein [Xenopus laevis]
          Length = 130

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 4/113 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-ITGSN-- 92
           D Y + A+ EGWRARSA+KLLQ++E++++ Q  +R VDL ++PGSWSQV +R + G +  
Sbjct: 10  DIYYRLAKEEGWRARSAFKLLQLDEEYRLFQGVQRAVDLCAAPGSWSQVLSRKLRGGDEQ 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
           +   ++VA+D+  M P+ GV   + D   + +   I     G P DLV+ D A
Sbjct: 70  SRGVKIVAVDLQAMAPLPGVIQIQGDITKVSTAHEIIGHFEGQPADLVVCDGA 122


>gi|326515274|dbj|BAK03550.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 486

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 9/196 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+R+R+A+KL Q++++ + L + R ++DL ++PG W QVA     + A  
Sbjct: 12  DEYYHLAKEQGYRSRAAFKLQQLDDRFRFLPAARAVLDLCAAPGGWVQVAVARAPAGAF- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGHR 151
             VV +D++ + P+ G      D         +R+ +        D+VL D   P +G  
Sbjct: 71  --VVGVDLVPIRPVRGAHSLTEDITTTRCRSAVRRLMDSRGVAVFDVVLHD-GSPNVGGA 127

Query: 152 KIDHLRTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
                   S L   A   A   L   G F+ K F+    + I+  LK+ F KV   KP A
Sbjct: 128 WAQEATAQSALVIDAVRLATAFLAPKGAFITKVFRSQDYSAIMFCLKQLFDKVEVTKPRA 187

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E++++   ++
Sbjct: 188 SRGTSAEIYIICLKYK 203


>gi|261330264|emb|CBH13248.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 255

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +    + R +VD+G SPGSW QV
Sbjct: 14  RQWMQQQSRDPFVLEARRRGYVARSAFKLLEMDDKFTLFSRGNTRVVVDIGCSPGSWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDM-EPILGVKFFKFDFLDLDSWE-----FIRQAIGGNPDL 138
                G   +   V  +D+L +   + G    + DF +    E      +     G  D+
Sbjct: 74  IRERCG---DKCAVFGVDVLRVASTVTGAVCIQGDFTNPAVREELLARMLTVRAVGVVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT-NDILCLLK 197
           V SDM          D  +   L  +A  FALE L  GG+F+ K     T   D+     
Sbjct: 131 VTSDMCLNRGTGSTSDRQKQEELNRSALAFALEQLVPGGNFVCKVLGSPTAYEDLRRDTC 190

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F +    KP +SR  S E F++ +G R+
Sbjct: 191 RWFVRTDICKPSSSRLTSDEAFMVCRGKRE 220


>gi|270705618|ref|ZP_06223086.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
 gi|270315795|gb|EFA27917.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
          Length = 136

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 6/125 (4%)

Query: 71  IVDLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDLG++PG WSQ V ++I G      RV+A DIL+M PI+GV F + DF D +    + 
Sbjct: 3   VVDLGAAPGGWSQYVVSQIGGKG----RVIACDILEMAPIVGVDFLQGDFRDENVLNALL 58

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             +G +  D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG  
Sbjct: 59  ARVGEDKVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEG 118

Query: 189 TNDIL 193
            ++ L
Sbjct: 119 FDEYL 123


>gi|297744408|emb|CBI37670.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 9/200 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+  G+R+R+A+KL+Q++ K+  L+S+R ++DL ++PG W Q A      
Sbjct: 7   KHRLDKFYHLAKEHGYRSRAAWKLVQLDSKYNFLRSSRAVLDLCAAPGGWMQAAVERVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAYPT 147
            +    ++ +D+  + P+ G    + D         +++ +        D+VL D   P 
Sbjct: 67  GSF---ILGVDLNPIAPVRGAISIEEDITKPACKARVKKLMSEYGCAAFDIVLHD-GSPN 122

Query: 148 IGHRKIDHLRTM-SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           IG           +L   A   A + L   G F+ K F+    N +L  LK+ F+KV   
Sbjct: 123 IGGAWTQEATAQNALVIDALRLATQFLAPKGAFVTKVFRSQDYNSVLYCLKQLFEKVEVD 182

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP ASR+ S E+F+L   ++
Sbjct: 183 KPAASRSTSAEIFVLGLKYK 202


>gi|312218785|emb|CBX98730.1| similar to AdoMet-dependent rRNA methyltransferase spb1
           [Leptosphaeria maculans]
          Length = 840

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 6/178 (3%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
           S  KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+ +  +    + +V +D+  ++ I 
Sbjct: 25  SMEKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVASEVMPA---GSLIVGVDLAPIKAIP 81

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI-DHLRTMSLCEAATFF 168
               F+ D         +RQ +     D VL D A P +G   + D      L   +   
Sbjct: 82  RCITFQSDITTDKCRATLRQHLKHLKADAVLHDGA-PNVGTAWVQDAFSQAELVLQSMKL 140

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           A E L  GG F+ K F+    N +L +  + F KV   KP +SR  S E+F++ +G++
Sbjct: 141 ATEFLAEGGTFVTKIFRSKDYNSLLWVFNQLFTKVEATKPPSSRNVSAEIFVVCRGYK 198


>gi|160331225|ref|XP_001712320.1| sbp1 [Hemiselmis andersenii]
 gi|159765767|gb|ABW97995.1| sbp1 [Hemiselmis andersenii]
          Length = 317

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 20/207 (9%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           +L +   D Y   ++   +R+R+A+KL+++N+K + L  +R ++DL ++PG W QV  ++
Sbjct: 2   FLKKERKDLYYFLSKKYFFRSRAAFKLIELNQKFRFLDKSRGVLDLCAAPGGWLQVVQKV 61

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFD---------FLDLDSWEFIRQAIGGNPDLV 139
               +  + ++ +D   + PI G   FK D          L L +W+  R       D+V
Sbjct: 62  V---SPGSLIIGVDAKKILPIKGCNMFKGDITSRGCLEPILKLKNWKNKRL------DVV 112

Query: 140 LSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           L D A P  G   + D L   SL   A   A+  +  GG F+ K F  G  + +L +L+ 
Sbjct: 113 LHDGA-PRTGTSWVRDALNQNSLSLNAFKLAVNCIEKGGWFVSKIFCSGNFHGLLFVLRF 171

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F+K+   KP ASR  S E +L+ K F
Sbjct: 172 FFKKIKIFKPRASRLTSAETYLICKDF 198


>gi|297809739|ref|XP_002872753.1| hypothetical protein ARALYDRAFT_911801 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318590|gb|EFH49012.1| hypothetical protein ARALYDRAFT_911801 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 804

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 9/201 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G R+R++YKLLQ++ K   L S+R ++DL ++PG W QVA +    
Sbjct: 7   KHRLDTYYRLAKESGLRSRASYKLLQLDAKFNFLHSSRTVLDLCAAPGGWMQVAVQKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW------EFIRQAIGGNPDLVLSDMAY 145
               + V+ ID++ + P+ G    + D                +       DLVL D + 
Sbjct: 67  ---GSLVLGIDLVKIAPVRGCVTIQQDITRTTECKAKIKKALKKHGTDKTFDLVLHDGSP 123

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G    + +   +L   +   A E L   G+F+ K F+    + ++  L + F+ V  
Sbjct: 124 NVGGAWSQEAMSQNALVIDSLKLATEFLAPHGNFITKIFRSRDYDSVVYCLGELFENVEV 183

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP+ASR+ S E +LL   ++
Sbjct: 184 FKPMASRSTSAETYLLGLNYK 204


>gi|225428430|ref|XP_002280414.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 842

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 9/200 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+  G+R+R+A+KL+Q++ K+  L+S+R ++DL ++PG W Q A      
Sbjct: 7   KHRLDKFYHLAKEHGYRSRAAWKLVQLDSKYNFLRSSRAVLDLCAAPGGWMQAAVERVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAYPT 147
               + ++ +D+  + P+ G    + D         +++ +        D+VL D   P 
Sbjct: 67  ---GSFILGVDLNPIAPVRGAISIEEDITKPACKARVKKLMSEYGCAAFDIVLHD-GSPN 122

Query: 148 IGHRKIDHLRTM-SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           IG           +L   A   A + L   G F+ K F+    N +L  LK+ F+KV   
Sbjct: 123 IGGAWTQEATAQNALVIDALRLATQFLAPKGAFVTKVFRSQDYNSVLYCLKQLFEKVEVD 182

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP ASR+ S E+F+L   ++
Sbjct: 183 KPAASRSTSAEIFVLGLKYK 202


>gi|330916680|ref|XP_003297518.1| hypothetical protein PTT_07944 [Pyrenophora teres f. teres 0-1]
 gi|311329755|gb|EFQ94378.1| hypothetical protein PTT_07944 [Pyrenophora teres f. teres 0-1]
          Length = 316

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W +R   D + + A+++G ++R+A+KLL++N+KH++ +  + +VDLG +PGSWSQVA   
Sbjct: 15  WKSRQGRDFFAKEARVKGLKSRAAFKLLELNDKHKLFKPGQTVVDLGFAPGSWSQVAVNR 74

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
           T  +    RV+ ID++  +P  GV   + +FL     E +R  +  +P++       PT+
Sbjct: 75  TLPDG---RVIGIDLIPAQPPRGVSTLQGNFLSPVIQEELRAYV-RDPEMGRPTKQAPTM 130



 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 21/109 (19%)

Query: 137 DLVLSDMAYP---TIG-HRKI-----------------DHLRTMSLCEAATFFALEMLNI 175
           D+VLSDM+ P   T+G H+K                  DH  +M LC AA  FA + L  
Sbjct: 195 DIVLSDMSEPWEQTVGLHKKSLSDPYFRMMNTSGNAFRDHAGSMDLCMAAMTFAFDTLKT 254

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           GG FL K ++G         +K+ F KV   KP +SRAES E + +  G
Sbjct: 255 GGHFLCKYYKGSEEKAFETRMKRLFAKVHREKPDSSRAESKEAYFVGLG 303


>gi|320169116|gb|EFW46015.1| ribosomal RNA large subunit methyltransferase J [Capsaspora
           owczarzaki ATCC 30864]
          Length = 317

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           RD L RH N+            A+     +   E+ Q+  +      + +S G     AA
Sbjct: 128 RDLLLRHSNETKQSSGTPPMAGAQQNEAHIDKEEQAQLKPNATNASSIATSNG-----AA 182

Query: 87  RITGSNANNTRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
               S   +  V+A+DI  ME + G +   + D   +     +        D+VLSDMA 
Sbjct: 183 NAPPSPPLSPLVLAVDIEPMERVPGAIVLPQADMTAILGTRLV--------DVVLSDMAP 234

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
           P  G+  + HL+ ++L EAA  FA   L I G F+ K+F G     +   L++HF++V  
Sbjct: 235 PASGNAGVTHLQCVNLIEAALRFATRFLRIDGWFVCKSFHGTEDQLLTTTLRRHFREVHF 294

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP A+R ES E + + +GF
Sbjct: 295 CKPPATRTESGEFYYVCEGF 314



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 26/95 (27%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-------NRR------ 70
            SS  W  R  +DPYV +A  +G+R RSAYKL Q+++K   L++       ++R      
Sbjct: 32  ASSSRWTKRQQSDPYVHQALEDGYRCRSAYKLKQLDDKFHFLRTPAGQAAASKRATASTA 91

Query: 71  -------------IVDLGSSPGSWSQVAARITGSN 92
                        ++D G+ PG W+QVA    G +
Sbjct: 92  TAAQPVVVRSGLVVIDCGARPGGWTQVAVERVGKD 126


>gi|255581527|ref|XP_002531569.1| ftsj, putative [Ricinus communis]
 gi|223528799|gb|EEF30805.1| ftsj, putative [Ricinus communis]
          Length = 228

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 32/222 (14%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQI ++H+++     ++DLG +PG+W QVA +  G   N 
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKQHKLITPGSSVLDLGCAPGAWLQVACQSLGPLKNG 67

Query: 96  TRVVAIDILDME---PILG--VKFFKFDFLDL--DSWEFIRQAIGGNPDLVLSDMAYPTI 148
             VV ID+  ++   P     VK    D ++L  D    +     G   +VLSDM  P  
Sbjct: 68  GSVVGIDLKKVKVPNPYCDARVKTVCADVMNLPRDQVRALSLQQKGF-SVVLSDMCPPVS 126

Query: 149 GHRKIDHLRTMSLCEAATFFALE------------------------MLNIGGDFLVKTF 184
           G    D   +M L   A   A+                         +L  GG  ++K  
Sbjct: 127 GITTKDAALSMELGMQALDIAIGGAASAHPDDENQNDDSTSGENDNGVLQAGGHLVIKLL 186

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +     +   + K  F+K   ++P A+R+ S E++L+ +G +
Sbjct: 187 ESEDIQEFTRICKPLFRKASWLRPKATRSSSREIYLICQGLK 228


>gi|156060649|ref|XP_001596247.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154699871|gb|EDN99609.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 367

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 29/220 (13%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINE---------------KHQILQSNRRIVDLGSSPGS 80
           D Y + A+ +GWRARSA+KLLQ++E               + +  +  + I+ + + P S
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDEGIEPHYTAAFGRAAWEDKEARMRQNILGIATQPIS 69

Query: 81  WSQVAARITG-SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI------- 132
             Q    ++      + ++VAID+  M P+ G+   + D     +   +  A+       
Sbjct: 70  EEQQTTGVSELKPKKDVKIVAIDLQPMSPLQGIITLRADITHPATVPLLLNALDSSYDPK 129

Query: 133 -----GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
                  NP DLV+SD A    G   +D      L  AA   AL +L  GG F+ K F+G
Sbjct: 130 SLSQQASNPVDLVISDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLRPGGKFVAKIFRG 189

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + +   LK  F++V+  KP +SRA SVE F++   F+
Sbjct: 190 RNVDLLFAQLKIFFERVVVAKPRSSRASSVEAFIVCLNFQ 229


>gi|323456843|gb|EGB12709.1| hypothetical protein AURANDRAFT_52052 [Aureococcus anophagefferens]
          Length = 947

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 23/210 (10%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV-DLGSSPGSWSQVAARITGSNA 93
           ND +   A+ +G+R+R+A+KL  IN++  I+ +  R+V DL ++PG W+QVAA+   +  
Sbjct: 14  NDKWYVLAKEQGYRSRAAFKLAHINKEFDIIGAKTRVVLDLCAAPGGWAQVAAK---AAG 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDF-LDLDSWEFIRQA---------------IGGNPD 137
               V+A+D+L + PI  V+    D  +D       R+A                G + D
Sbjct: 71  RGAAVIAVDLLPIRPIPNVRTIVGDITMDTTHQHVKREAREALAKFRDDDGEGRAGRHVD 130

Query: 138 LVLSDMAYPTIGHR-KIDHLRTMSLCEAATFFALEM-LNIGGDFLVKTFQGGTTNDILCL 195
           +VL D A P +G     D      +   A    +E  L  GG F+ K ++G   N +   
Sbjct: 131 VVLCDGA-PNVGAAYNKDAFVQNEIALLALKCGVECGLRRGGSFVTKVYRGQDYNALTWA 189

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             + F++V   KP +SRA+S E+F++  G+
Sbjct: 190 FGRLFERVRATKPASSRAQSAEIFVVCSGY 219


>gi|325117088|emb|CBZ52640.1| KLLA0F18414p, related [Neospora caninum Liverpool]
          Length = 393

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           G+ P S S VA  +  S      +VA+D+ ++ PI GV   + D     + + I      
Sbjct: 162 GTQPSSPSSVAESL--SPPAPPLIVAVDLQELAPIPGVYTLQADITHESTVKAILDFFAQ 219

Query: 135 NP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
            P DLV+ D A    G   ID      L  AA   A ++L  GG F+ KTF+G     + 
Sbjct: 220 QPADLVICDGAPDVTGMHDIDEFIQAQLLFAALKVACKVLKPGGVFVCKTFRGEQIPLVY 279

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             LK  F  V   KP ASR  S+E FL+ +GFR
Sbjct: 280 LQLKTLFDAVRCCKPAASRNSSIEAFLVCRGFR 312



 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
          L++   D Y +RA+ EG+RARSAYKLLQ++++   L
Sbjct: 4  LSKDRRDIYYRRAKEEGYRARSAYKLLQLDDELHFL 39


>gi|241997876|ref|XP_002433581.1| cell division protein FtsJ, putative [Ixodes scapularis]
 gi|215495340|gb|EEC04981.1| cell division protein FtsJ, putative [Ixodes scapularis]
          Length = 274

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 2/158 (1%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EF 127
           ++ VDL ++PGSWSQV +R    +  + ++VA+D+  M P+ GV   + D  ++ +  + 
Sbjct: 11  KKAVDLCAAPGSWSQVLSRKLRYD-YDVKIVAVDLQAMAPLPGVIQLQGDITEISTARKI 69

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           I    G   DLV+ D A    G   ID      L  +A      +L  GG ++ K F+G 
Sbjct: 70  INHFEGEKADLVVCDGAPDVTGLHDIDEYIQAELLLSALNITTHILKDGGTYVAKIFRGK 129

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            T  +   LK  F+ V+  KP +SR  S+E F++ + +
Sbjct: 130 DTTLLYAQLKLFFKHVVVAKPRSSRNSSIESFVVCQVY 167


>gi|302783825|ref|XP_002973685.1| hypothetical protein SELMODRAFT_99612 [Selaginella moellendorffii]
 gi|302787935|ref|XP_002975737.1| hypothetical protein SELMODRAFT_104009 [Selaginella moellendorffii]
 gi|300156738|gb|EFJ23366.1| hypothetical protein SELMODRAFT_104009 [Selaginella moellendorffii]
 gi|300158723|gb|EFJ25345.1| hypothetical protein SELMODRAFT_99612 [Selaginella moellendorffii]
          Length = 223

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 24/215 (11%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           H+ D + + A    + ARSA+KL++I EKH+IL+    I+DLG +PG+W QVA +  G+ 
Sbjct: 4   HVPDFFYKEALRLRYVARSAFKLVEIQEKHRILKPGAAILDLGCAPGAWLQVACQNLGTR 63

Query: 93  ANNTRVVAIDILDMEPILG------VKFFKFDFLDL--DSWEFIRQAIGGNPDLVLSDMA 144
                VV +D   +  + G      VK    D + +  ++   +   +    +++LSDM 
Sbjct: 64  DQGGVVVGVDTKKIN-VPGDHTDHRVKAIAADVMKIKPETLAAMTPEVKITYNVILSDMC 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFAL---------------EMLNIGGDFLVKTFQGGTT 189
               G    D   +  L   A   AL                +L   G  ++K  +G  +
Sbjct: 123 PSVSGIGFKDATLSAELGSRALELALGFHPDDERDSTKKVNGLLVPSGSLVIKLLEGEES 182

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
                   K+F+ V  ++P ASR+ S E++L+AKG
Sbjct: 183 QGFPDYCNKYFRSVSWLRPKASRSTSREIYLIAKG 217


>gi|15240727|ref|NP_196887.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|5821280|dbj|BAA83750.1| FtsJ [Arabidopsis thaliana]
 gi|10177649|dbj|BAB11111.1| FtsJ [Arabidopsis thaliana]
 gi|332004564|gb|AED91947.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
          Length = 224

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 30/221 (13%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D + + AQ  G+ ARSA+KLLQI +++++++    ++DLG +PG+W QVA +  G   
Sbjct: 6   VPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLR 65

Query: 94  NNTRVVAIDI--LDMEPILG--VKFFKFDFLDLDSW---EFIRQAIGGNPDLVLSDMAYP 146
           +   VV +DI  + + P     V+    D L+       E   Q +G +  ++LSDM + 
Sbjct: 66  SGGIVVGMDIKKVKVPPQCDSRVQTIAADVLNFPRQKIRELSPQQLGFS--VILSDMCHS 123

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNI---------------------GGDFLVKTFQ 185
             G    D   +  L   A   A+    I                     GG  ++K  +
Sbjct: 124 VSGITTRDAALSAELGMRALDLAVGQAAISQSPNDDDGGPNESRPGVLRHGGHLVIKLLE 183

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                D   + K  F K   ++P A+R  S E++L+ +GFR
Sbjct: 184 SEDAQDFARICKPIFNKASWLRPKATRPSSREIYLICQGFR 224


>gi|237832339|ref|XP_002365467.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|211963131|gb|EEA98326.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii ME49]
          Length = 394

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 79/195 (40%), Gaps = 39/195 (20%)

Query: 70  RIVDLGSSPGSWSQVA------------ARITGSNANNTR-------------------- 97
           R VDL ++PGSWSQV             AR     +   R                    
Sbjct: 118 RAVDLCAAPGSWSQVLRRRLRDNFRRKLARYEKQVSEQARDSENSPSSTSSSSLSSPSLR 177

Query: 98  ------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
                 +VA+D+ +M PI GV   + D     + + I       P DLV+ D A    G 
Sbjct: 178 PPAPPLIVAVDLQEMAPIPGVHALQADITHESTVKAILDFFAQQPADLVVCDGAPDVTGM 237

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             ID      L  AA   A ++L  GG F+ K F+G     +   LK  F +V   KP A
Sbjct: 238 HDIDEFIQAQLLFAALRVACKVLKPGGVFVCKAFRGEQIPLVYVQLKTLFAEVRCCKPAA 297

Query: 211 SRAESVEMFLLAKGF 225
           SR  S+E FL+ KGF
Sbjct: 298 SRNSSIEAFLVCKGF 312



 Score = 43.1 bits (100), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 13/67 (19%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
          L++   D Y +RA+ EG+RARSAYKLLQ++++   L           SP S S+   R  
Sbjct: 4  LSKDRRDIYYRRAKEEGYRARSAYKLLQLDDELHFL-----------SPPSLSR--RRRE 50

Query: 90 GSNANNT 96
          G NAN T
Sbjct: 51 GRNANGT 57


>gi|302758118|ref|XP_002962482.1| hypothetical protein SELMODRAFT_141188 [Selaginella moellendorffii]
 gi|302758956|ref|XP_002962901.1| hypothetical protein SELMODRAFT_78506 [Selaginella moellendorffii]
 gi|300169343|gb|EFJ35945.1| hypothetical protein SELMODRAFT_141188 [Selaginella moellendorffii]
 gi|300169762|gb|EFJ36364.1| hypothetical protein SELMODRAFT_78506 [Selaginella moellendorffii]
          Length = 830

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+ +G+R+R+A+KL+Q++ K+  L S   ++DL ++PG W QVA      
Sbjct: 8   KHRLDRFYYLAKEQGYRSRAAFKLVQLDRKYGFLSSAHSVLDLCAAPGGWMQVAVE---K 64

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ +D++ + P+ G    + D         I + +  N     D+VL D +   
Sbjct: 65  MPVRSVVIGVDLVPIRPVRGALSLQGDITTPKCASDIGKILDQNGLRMVDVVLHDGSPNV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   SL   +   A + L   G F+ K F+    N +    ++ F KV   K
Sbjct: 125 GGAWAKEAMTQSSLVLDSLKLATKFLAPKGTFVTKVFRSQDYNALKYAFEQLFAKVEVTK 184

Query: 208 PVASRAESVEMFLL 221
           P+ASR+ S E++++
Sbjct: 185 PIASRSTSAEIYVV 198


>gi|85080610|ref|XP_956572.1| hypothetical protein NCU03987 [Neurospora crassa OR74A]
 gi|28917641|gb|EAA27336.1| predicted protein [Neurospora crassa OR74A]
          Length = 2042

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 5/94 (5%)

Query: 29   WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPGSWSQVAA 86
            W  R  ND Y + A+  G ++R+A+KLL+IN+K+++ + N    +VDLG +PGSWSQVA 
Sbjct: 1637 WKARQSNDYYARSARTAGLKSRAAFKLLEINKKYRLFRRNSSQIVVDLGFAPGSWSQVAL 1696

Query: 87   RITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
             +T  +    +VV IDI+  +P  GV   + +FL
Sbjct: 1697 DLTKPDG---KVVGIDIIPAQPPRGVSSIQGNFL 1727



 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 21/98 (21%)

Query: 137  DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNI 175
            D+VLSDM+ P                     T G    DH  +M LC AA  FA + L  
Sbjct: 1937 DVVLSDMSEPWPQTSGFSMKTLSNPYSRMMNTSGISFKDHAGSMDLCYAALSFANDTLKP 1996

Query: 176  GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
            GG F+ K +QG     +  +LKK F KV   KP +SR+
Sbjct: 1997 GGHFVCKFYQGSEDKKLENMLKKLFTKVHRDKPDSSRS 2034


>gi|302511111|ref|XP_003017507.1| hypothetical protein ARB_04388 [Arthroderma benhamiae CBS 112371]
 gi|291181078|gb|EFE36862.1| hypothetical protein ARB_04388 [Arthroderma benhamiae CBS 112371]
          Length = 768

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 23/193 (11%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++P                 
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAP----------------- 55

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
              V +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 56  ---VGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 111

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 112 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 171

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 172 VSAEIFVVCLGFK 184


>gi|302758756|ref|XP_002962801.1| hypothetical protein SELMODRAFT_404107 [Selaginella moellendorffii]
 gi|300169662|gb|EFJ36264.1| hypothetical protein SELMODRAFT_404107 [Selaginella moellendorffii]
          Length = 814

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+ +G+R+R+A+KL+Q++ K+  L S   ++DL ++PG W QVA      
Sbjct: 8   KHRLDRFYYLAKEQGYRSRAAFKLVQLDRKYGFLSSAHSVLDLCAAPGGWMQVAVE---K 64

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + ++ +D++ + P+ G    + D         I + +  N     D+VL D +   
Sbjct: 65  MPVRSVIIGVDLVPIRPVRGALSLQGDITTPKCASDIGKILDQNGLRMVDVVLHDGSPNV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   SL   +   A + L   G F+ K F+    N +    ++ F KV   K
Sbjct: 125 GGAWAKEAMTQSSLVLDSLKLATKFLAPKGTFVTKVFRSQDYNALKYAFEQLFAKVEVTK 184

Query: 208 PVASRAESVEMFLL 221
           P+ASR+ S E++++
Sbjct: 185 PIASRSTSAEIYVV 198


>gi|161899253|ref|XP_001712853.1| Sbp1 [Bigelowiella natans]
 gi|75756346|gb|ABA27241.1| Sbp1 [Bigelowiella natans]
          Length = 286

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 9/189 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
              +R+RSA+KL+QI +K  +L+   RI+DL   PG W Q+   +      +  +V +D+
Sbjct: 53  FHSFRSRSAFKLIQIEKKFNLLRFTNRIIDLCCFPGGWLQIIQLLA---KRSYLIVGVDL 109

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQ-AIGGNPDLVLSDMAYPTIGHRK-IDHLRTMSL 161
           + ++P+  V F K        +  + + + G   D +L+D + P +G    ID      L
Sbjct: 110 VKIKPLQSVIFIKMSIRSPMLYPALNKISKGAYYDCLLNDGS-PNVGTENIIDSEMQNGL 168

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +   A+++L  GG  + K F     N  + LL+  F+ VI +KP ASR  S E+++L
Sbjct: 169 AFFSFKIAIKVLRDGGSLVSKFFISKNLNIFIYLLRILFKYVIILKPNASRVHSSEVYIL 228

Query: 222 ---AKGFRK 227
                GF+K
Sbjct: 229 NFNFSGFKK 237


>gi|221057686|ref|XP_002261351.1| methyltransferase [Plasmodium knowlesi strain H]
 gi|194247356|emb|CAQ40756.1| methyltransferase, putative [Plasmodium knowlesi strain H]
          Length = 1009

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I +    ++DL ++PG W QVA +   +   +
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYK---NMKRS 69

Query: 96  TRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-K 152
           + ++ +D++ +  I   V   K D       + I+  I     D++L+D A P +G    
Sbjct: 70  STIIGVDLVPIRKIDNNVITLKCDITTSACVKQIKNIIKNEKADVILNDGA-PNVGTTYS 128

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L   +   A   L   G F+ K F+      ++ +++K F +V H+KP +SR
Sbjct: 129 YDSFNQNVLVLNSIKIANLFLKKKGIFITKVFRNEEYVSLIWVMEKLFGQVKHIKPRSSR 188

Query: 213 AESVEMFLLAKGF 225
             S E++L+   F
Sbjct: 189 EISSEIYLVGLNF 201


>gi|119607628|gb|EAW87222.1| hCG17134, isoform CRA_a [Homo sapiens]
          Length = 162

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 98  VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDH 155
           V+ +D+L + P+ G  F    D  D  + + I + + G   D++LSDMA    G R +DH
Sbjct: 24  VLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDH 83

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R +SLC        ++L  GG FL KT+ G  +  +   L + FQ V  +KP ASR ES
Sbjct: 84  DRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKES 143

Query: 216 VEMFLLAKGF 225
            E++ LA  +
Sbjct: 144 SEVYFLATQY 153


>gi|297807411|ref|XP_002871589.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317426|gb|EFH47848.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 229

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 35/226 (15%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D + + AQ  G+ ARSA+KLLQI +++++++    ++DLG +PG+W QVA +  G   
Sbjct: 6   VPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLK 65

Query: 94  NNTRVVAIDI--LDMEPILG--VKFFKFDFLDLDSW---EFIRQAIGGNPDLVLSDMAYP 146
           +   VV +DI  + + P     V+    D L+       E   Q +G +  ++LSDM + 
Sbjct: 66  SGGIVVGMDIKKVKVPPQCDSRVQTIAADVLNFPRQTIRELSPQQLGFS--VILSDMCHS 123

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNI--------------------------GGDFL 180
             G    D   +  L   A   A+    I                          GG  +
Sbjct: 124 VSGITTRDAALSAELGMRALDLAVGQAAISQSPDDDNDGGDEVPSNESRRGVLRHGGHLV 183

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K  +     D   + K  F K   ++P A+R+ S E++L+ +GFR
Sbjct: 184 IKLLESEDAQDFARICKPIFNKASWLRPKATRSSSREIYLICQGFR 229


>gi|269861051|ref|XP_002650241.1| 23S rRNA methylase [Enterocytozoon bieneusi H348]
 gi|220066331|gb|EED43817.1| 23S rRNA methylase [Enterocytozoon bieneusi H348]
          Length = 556

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 12/196 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+R+R+A+KLL++N+K+  L+  R  +DL ++PG W Q+   +       
Sbjct: 10  DEYYRLAKERGYRSRAAFKLLELNKKYNFLKDCRIAIDLCAAPGGWLQI---LMQEMPPT 66

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
            +++ ID+  +E       F+    D+ + E  R+ I        D+V+ D A P  G+ 
Sbjct: 67  RKIIGIDLDKIERCGDCHTFQS---DITTQECRRELICLLDNNKADIVVHDGA-PNFGND 122

Query: 152 -KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D      L  +A   A E L   G F+ K  +      IL LL+  F+ V   KP++
Sbjct: 123 PSKDIFIQNDLVLSALKLATEFLKTNGIFVTKIHRSENFVKILNLLRSLFKHVTITKPLS 182

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E + + + ++
Sbjct: 183 SRTTSAETYAVCRLYK 198


>gi|156101269|ref|XP_001616328.1| FtsJ-like methyltransferase [Plasmodium vivax SaI-1]
 gi|148805202|gb|EDL46601.1| FtsJ-like methyltransferase, putative [Plasmodium vivax]
          Length = 1006

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I +    ++DL ++PG W QVA +   +   +
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYK---NMKRS 69

Query: 96  TRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHR-K 152
           + ++ +D++ +  I   V   K D       + I+  I     D++L+D A P +G    
Sbjct: 70  STIIGVDLVPIRKIDNNVITLKCDITTGACIKQIKNIIKNEKADVILNDGA-PNVGTTYS 128

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L   +   A   L   G F+ K F+      ++ +++K F +V H+KP +SR
Sbjct: 129 YDSFNQNVLVLNSIKIANLFLKKRGIFITKVFRNEEYVSLIWVMEKLFGQVKHIKPRSSR 188

Query: 213 AESVEMFLLAKGF 225
             S E++L+   F
Sbjct: 189 EISSEIYLIGLNF 201


>gi|289614367|emb|CBI58877.1| unnamed protein product [Sordaria macrospora]
          Length = 522

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 61/94 (64%), Gaps = 5/94 (5%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQVAA 86
           W  R  +D Y + A+  G ++R+A+KLL+IN+K+++ +  S + +VDLG +PGSWSQVA 
Sbjct: 64  WKTRQFSDRYAREARTAGLKSRAAFKLLEINKKYRLFRPSSGQIVVDLGFAPGSWSQVAL 123

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
            +T  +    +VV IDI+  +P  GV   + +FL
Sbjct: 124 DLTKPDG---KVVGIDIIPAQPPRGVSAIQGNFL 154



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 21/112 (18%)

Query: 137 DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+VLSDM+ P                     T G    DH  +M LC AA  FA + L  
Sbjct: 402 DVVLSDMSEPWPQTSSFSIKTLSNPYNRMMNTSGISFKDHAGSMDLCYAALSFANDTLKP 461

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           GG F+ K +QG     +  +L+K F KV   KP +SR+ES E + +A   R+
Sbjct: 462 GGHFVCKFYQGSEDKKLEDMLRKLFGKVFRDKPDSSRSESKEAYFVALNRRR 513


>gi|72044279|ref|XP_798087.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115977311|ref|XP_001185839.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 649

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANN----TRVVAIDILDMEPILGVKFFKFDF 119
           + +S  ++VDL ++PGSWSQV +R      +     T++VA+D+  M P+ GV   + D 
Sbjct: 2   VPKSVTKVVDLCAAPGSWSQVLSRKLSRKEDGSYEGTKIVAVDLQAMAPLPGVIQLQGDI 61

Query: 120 L-DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
             +  + E +    G   DLV+ D A    G   ID      L  AA      +L   G 
Sbjct: 62  TKESTANEIVSHFEGEKADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITTHVLKPQGT 121

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           F+ K F+G     +   LK  F +V   KP +SR  S+E F++ + +
Sbjct: 122 FVAKIFRGKDVTLLYSQLKIFFPQVTIAKPRSSRNSSIEAFVVCQRY 168


>gi|154314078|ref|XP_001556364.1| hypothetical protein BC1G_04982 [Botryotinia fuckeliana B05.10]
 gi|150849128|gb|EDN24321.1| hypothetical protein BC1G_04982 [Botryotinia fuckeliana B05.10]
          Length = 385

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 64/245 (26%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------- 88
           D Y + A+ +GWRAR          K  +     R+VDL ++PGSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRAR----------KFDLFSDVTRVVDLCAAPGSWSQVLSRVLIKGEKF 59

Query: 89  --------------------TGSNAN--------------NTRVVAIDILDMEPILGVKF 114
                               T S+                + ++VAID+  M P+ G+  
Sbjct: 60  GRAAWEDKEARMRQNILEINTPSSTEEKQLSNETELKPKKDVKIVAIDLQPMSPLQGIIT 119

Query: 115 FKFDFLDLDSWEFIRQAI------------GGNP-DLVLSDMAYPTIGHRKIDHLRTMSL 161
            + D     +   +  A+              NP DLV+SD A    G   +D      L
Sbjct: 120 LRADITHPATVPLLLSALDSSYDPKSLSQQASNPVDLVISDGAPDVTGLHDLDIYVQSQL 179

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
             AA   AL +L  GG F+ K F+G   + +   LK  F++V+  KP +SRA SVE F++
Sbjct: 180 LFAALNLALCVLRPGGKFVAKIFRGRNVDLLFAQLKIFFERVVVAKPRSSRASSVEAFIV 239

Query: 222 AKGFR 226
              F+
Sbjct: 240 CLNFQ 244


>gi|322826644|gb|EFZ31154.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 268

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 13/107 (12%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---RRIVDLGSSPGSWSQ--------- 83
           D Y ++A+ EG+RARSAYKLLQ+ E+  IL  +     +VDL ++PGSWSQ         
Sbjct: 36  DIYYRKAKEEGYRARSAYKLLQLQEEFNILNRDDIQTGVVDLCAAPGSWSQLLSRHLREE 95

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWEFIR 129
           V  R    ++   R+VA+D+ +M PI GV+  + D   +  + E IR
Sbjct: 96  VGGRTEKQSSGAPRIVAVDLQEMMPIEGVQLLQGDITSETTAREIIR 142


>gi|195567038|ref|XP_002107082.1| GD17262 [Drosophila simulans]
 gi|194204479|gb|EDX18055.1| GD17262 [Drosophila simulans]
          Length = 204

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +   +
Sbjct: 13  DKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMPVS 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGH 150
           + V+ +D+  + PI G        ++  + E  RQ++         D+VL D A P +G 
Sbjct: 70  SIVIGVDLFPIRPIAGC----IGLVEDITTEKCRQSLTKELQSWKADVVLHDGA-PNVGR 124

Query: 151 RKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
             + D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+K
Sbjct: 125 NWLYDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKK 177


>gi|124513798|ref|XP_001350255.1| methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23615672|emb|CAD52664.1| methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 1019

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K  + ++   ++DL ++PG W QVA +   + +  
Sbjct: 13  DKYYKLAKTAGYRARSAFKLIQIAQKFNVFKNANILIDLCAAPGGWLQVAYK---NMSKQ 69

Query: 96  TRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHR-K 152
           + ++ +D++ +  I   V   K D    D  + I+  I  +  D++L+D A P +G    
Sbjct: 70  STIIGVDLVPIRKIDDNVITIKSDITTSDCIKKIKNIIKMDKADVILNDGA-PNVGTTYS 128

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L   +   A   L   G F+ K F+      ++ +L+K F  V H+KP +SR
Sbjct: 129 YDSFNQNVLVLNSIKIAYIFLKKNGIFITKVFRNEEYISLIWVLEKLFGDVKHIKPRSSR 188

Query: 213 AESVEMFLLAKGF 225
             S E++L+   F
Sbjct: 189 EISSEIYLVGLNF 201


>gi|58617234|ref|YP_196433.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Gardel]
 gi|75356966|sp|Q5FH15|RLME_EHRRG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58416846|emb|CAI27959.1| Ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Gardel]
          Length = 129

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 55/91 (60%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G++++DH   ++LCE +   A++ +   G F+ K  QG    +    +
Sbjct: 34  DVVLSDMAPKACGNKQVDHANIINLCEMSLEIAVKFIKPNGIFITKILQGEYEKEFYQSV 93

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K HF  V + KP ASR +S EM+L++ GF++
Sbjct: 94  KYHFNSVKYFKPKASRKDSSEMYLVSLGFKE 124


>gi|58579180|ref|YP_197392.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Welgevonden]
 gi|81351125|sp|Q5FEH6|RLME_EHRRW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58417806|emb|CAI27010.1| Ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 129

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 55/91 (60%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDMA    G++++DH   ++LCE +   A++ +   G F+ K  QG    +    +
Sbjct: 34  DVVLSDMAPKACGNKQVDHANIINLCEMSLEIAVKFIKPNGIFITKILQGEYEKEFYQSV 93

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K HF  V + KP ASR +S EM+L++ GF++
Sbjct: 94  KYHFNSVKYFKPKASRKDSSEMYLVSLGFKE 124


>gi|213019910|ref|ZP_03335699.1| ribosomal RNA large subunit methyltransferase J, putative
          [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|212994501|gb|EEB55160.1| ribosomal RNA large subunit methyltransferase J, putative
          [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 61

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 45/56 (80%)

Query: 34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
          +ND YVQ+   +G+R+RSAYKL++I++K ++LQ  ++I+DLG+ PG WSQVA + T
Sbjct: 1  MNDQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVAPQFT 56


>gi|224112735|ref|XP_002316277.1| predicted protein [Populus trichocarpa]
 gi|222865317|gb|EEF02448.1| predicted protein [Populus trichocarpa]
          Length = 232

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 47/230 (20%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQI +KH+++     ++DLG +PG+W QVA +  G   N 
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKKHKLIAPGSSVLDLGCAPGAWLQVACQSLGPLKNG 67

Query: 96  TRVVAIDI--LDMEPILG---VKFFKFDFLDLD--------------------------- 123
             VV ID+  + + P+     V+    D + L                            
Sbjct: 68  GAVVGIDLKKVKVPPLYCDSRVQTVCADVMKLPKNQVRALSPRQKGFSVVLSDMCPLVSG 127

Query: 124 --------SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                   S E   QA+G    L +   A   +   + D L   S+C A       +L  
Sbjct: 128 ITTRDAALSAELGMQALG----LAVGRAATAHLDEIRTDRLLNDSVCTADDN---GILQP 180

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG  ++K  +     +   + K  F+K   ++P A+R+ S E++L+ +G 
Sbjct: 181 GGHLVIKLLESEDNKEFSRICKPLFRKASWLRPKATRSSSREIYLICQGL 230


>gi|171677887|ref|XP_001903894.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937012|emb|CAP61670.1| unnamed protein product [Podospora anserina S mat+]
          Length = 336

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPGSWSQVAA 86
           W  R   D +   A+++G R+R+A+KLL++ EK+ + +  R   +VDLG +PGSWSQVA 
Sbjct: 59  WKQRQSRDRFALAARVQGLRSRAAFKLLEMQEKYSLFRPRRNQIVVDLGYAPGSWSQVAL 118

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
             T   A + +V+ ID+L  +P  GV   + +FL
Sbjct: 119 DAT---APDGKVIGIDLLPAQPPKGVSTIQGNFL 149



 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDM   T G    DH  +M LC+AA  FA E L   G F+ K ++G   +++  +L
Sbjct: 222 DVVLSDMLMNTSGISLRDHAGSMELCKAALTFASETLKPDGHFVCKYYEGSGDDELKMVL 281

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLA 222
           KK F KV   KP++SR ES E F +A
Sbjct: 282 KKMFAKVHREKPMSSRKESREAFYVA 307


>gi|84998454|ref|XP_953948.1| ribosomal RNA methyltransferase (FtsJ ) [Theileria annulata]
 gi|65304946|emb|CAI73271.1| ribosomal RNA methyltransferase (FtsJ homologue), putative
           [Theileria annulata]
          Length = 359

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 45/203 (22%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTR-------------------------VVAIDI 103
           + +VDL S+PGSWSQ+ +++   +    +                         +VAIDI
Sbjct: 119 KNVVDLCSAPGSWSQLLSKMVHEDYETLKNACKKLQTQQEVCKNLVEYVNIKPVIVAIDI 178

Query: 104 LDMEPILGVKFFKFDFLDLDSWEF------------IRQAIGG--------NPDLVLSDM 143
             M PI GV+F K D  D +  +             I QA GG        N  L+  D 
Sbjct: 179 QQMAPIEGVRFLKGDITDPEILKEVLQLFIENVSRNINQAYGGEYDEKLRRNAQLITCDG 238

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  + D      L ++A      +L+  G F+ KTF       I   +   F   
Sbjct: 239 APDISGLHETDSFLQSYLIKSALSVCFSLLDPDGCFICKTFFSSENTPIFTQVSSFFDYC 298

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR+ S E F++A G++
Sbjct: 299 TIFKPSASRSSSFEHFIVAVGYK 321



 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
          D Y ++A+ EG+RARSAYKLLQI E   IL
Sbjct: 10 DIYYRKAKEEGFRARSAYKLLQIFESFHIL 39


>gi|39974589|ref|XP_368685.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145018542|gb|EDK02821.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 385

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 78/251 (31%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------ 89
           D Y + A+ +GWRARSA+KLLQ++E                  GSWSQV +R+       
Sbjct: 10  DAYYRLAKEQGWRARSAFKLLQLDE------------------GSWSQVLSRVLIKGEKF 51

Query: 90  GSNA-----------------------------------------NNTRVVAIDILDMEP 108
           G  A                                          + ++V+ID+  + P
Sbjct: 52  GRTAWQDDEAKFRRQMLHIFDGQGQEPVVDGQGDPSVTDAELKPRKDVKIVSIDLQPISP 111

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAI--GGNP-----------DLVLSDMAYPTIGHRKIDH 155
           + G+   + D     +   + +A+  G +P           DLVLSD A    G   +D 
Sbjct: 112 LPGIVTLRADITHPATVPLLLKALDPGYDPKTMSQQASHPVDLVLSDGAPDVTGLHDLDI 171

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
                L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SRA S
Sbjct: 172 YVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKVFFEKVIVAKPRSSRASS 231

Query: 216 VEMFLLAKGFR 226
           VE F++   F+
Sbjct: 232 VEAFIVCLNFQ 242


>gi|225449466|ref|XP_002283276.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086215|emb|CBI31656.3| unnamed protein product [Vitis vinifera]
          Length = 233

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 38/227 (16%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQ+ +++++++    ++DLG +PG+W QVA +  G   N 
Sbjct: 8   DFFYREAQRLGYAARSAFKLLQMQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLKNG 67

Query: 96  TRVVAID-----ILDMEPILGVKFFKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPT 147
             VV ID     +  M     VK    D + L   E   F  Q  G +  ++LSDM    
Sbjct: 68  GVVVGIDLKKVKVPSMHCDSRVKTVCADVMKLPKDEIRAFSPQRKGFS--VILSDMCPLV 125

Query: 148 IGHRKIDHLRTMSLCEAATFFALE----------------------------MLNIGGDF 179
            G    D + +  L   A   A+                             +L  GG  
Sbjct: 126 SGITTKDAVLSAELGMQALHLAVRGPALAPSGDEIQKGEHHDDSTSGPDDDGILQPGGHL 185

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++K  +         + K  F+K   ++P A+R+ S E++L+ +G R
Sbjct: 186 VIKLLESEDAQGFSRICKPLFRKASWLRPKATRSSSREIYLICQGLR 232


>gi|168031208|ref|XP_001768113.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680551|gb|EDQ66986.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 19/207 (9%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+   + ARSA+KLL+I +KH+I++    ++DLG +PG++ QVA +  G     
Sbjct: 7   DFFYREARRLKYVARSAFKLLEIQKKHRIIRPGASVLDLGCAPGAFLQVACQNLGPPEKG 66

Query: 96  TRVVAIDILDMEPILG-----VKFFKFDFLDLDSWEFIR-QAIGGNPDLVLSDMAYPTIG 149
             VV +DI  ++         V+    D + +         A G    +++SDM     G
Sbjct: 67  GVVVGVDIKKVKVPADHCDHRVRTIASDVMQMSHAALASFSASGKGYSVLISDMCPSVSG 126

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNI-------------GGDFLVKTFQGGTTNDILCLL 196
               D   +  L   A   AL    +             GG  ++K  +G  +   L L 
Sbjct: 127 VGSKDAALSAELGMCALHLALGQSEVDDSIPETGGILLPGGSIVIKLLEGEDSQGFLKLC 186

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAK 223
           K  FQ++  ++P A+R+ S E++ + K
Sbjct: 187 KGRFQQLHWLRPKATRSTSREIYFIGK 213


>gi|162605884|ref|XP_001713457.1| SAM-dependent methyltransferase [Guillardia theta]
 gi|13794389|gb|AAK39766.1|AF083031_123 SAM-dependent methyltransferase [Guillardia theta]
          Length = 288

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 20/201 (9%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +  +A+    R+R+A+KLL +N+K    + +R I+DL S+PG W Q+   ++  N   
Sbjct: 5   DYWYHQAKKFNLRSRAAFKLLHLNDKFNFFKKSRSILDLCSAPGGWLQMCRILSNENC-- 62

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ-AIGGNPD--LVLSDMAYPTIG--- 149
            ++  +D   + PI   + F  D    +    + +  I  N    ++L+D + P +G   
Sbjct: 63  -KIFGVDAQKISPIKKCETFIGDITSPNLIGLLEKIVIKTNRKFCIILNDGS-PKMGTFW 120

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNI----GGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
           +R   +   + L      + L ++ +     G F+ K F+    N IL ++K  F+KV  
Sbjct: 121 NRDAYNQNILVL------YCLRIIRLFLKNNGWFITKIFRSENFNKILFVVKNMFEKVFI 174

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E++L+ K F+
Sbjct: 175 KKPKSSRPNSAEIYLICKKFK 195


>gi|238502002|ref|XP_002382235.1| ftsj, putative [Aspergillus flavus NRRL3357]
 gi|220692472|gb|EED48819.1| ftsj, putative [Aspergillus flavus NRRL3357]
          Length = 206

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 50/86 (58%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDM   T G    DH  +M LC AA  F+ E+L  GG F+ K +QG    D+   L
Sbjct: 105 DVVLSDMMMNTSGMSFRDHAGSMDLCRAALQFSFEVLKAGGHFVCKFYQGAEDKDLEKQL 164

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLA 222
           K+ FQKV  +KP +SR ES E + + 
Sbjct: 165 KRLFQKVHRLKPESSRNESKEAYFIG 190


>gi|323446286|gb|EGB02505.1| hypothetical protein AURANDRAFT_35192 [Aureococcus anophagefferens]
          Length = 156

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVA 85
           +R   D Y + A+   +RAR+A+KLLQ++    IL +       R+ DL ++PG WSQV 
Sbjct: 5   SRDKRDIYYRLAKTSNYRARAAFKLLQLDATLGILSTATTHDRLRVADLCAAPGGWSQVV 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLS 141
           A          RVVA+D+  + PI GV+    D     +   +  A+GG  D    +VL 
Sbjct: 65  A----ERRPGARVVAVDLKPIAPIAGVEMVLGDITAAATAREVVDALGGGADARRGVVLC 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D A   IG   +D      L   A   A  +L  GG
Sbjct: 121 DGAPDVIGLNDVDEHLQNELVRKAWSMAEAILARGG 156


>gi|50554505|ref|XP_504661.1| YALI0E31933p [Yarrowia lipolytica]
 gi|49650530|emb|CAG80265.1| YALI0E31933p [Yarrowia lipolytica]
          Length = 245

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 10/130 (7%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           V+ +     SR W  R + D +V  A+ +G+R+R+AYKL +++   ++ +    +VDLG 
Sbjct: 19  VRGKKHDARSR-WEMRQMKDKHVAMAKADGFRSRAAYKLQELDSMFRLFKPGMTVVDLGF 77

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG+WSQVAA+         RV+ +DIL   P  GV   + +FL  ++   +++      
Sbjct: 78  APGAWSQVAAQRVRPGG---RVIGVDILPCIPPPGVSSIQGNFLSKETQNELKRV----- 129

Query: 137 DLVLSDMAYP 146
            L +S M  P
Sbjct: 130 -LAVSAMGVP 138


>gi|320580692|gb|EFW94914.1| Ribosomal RNA methyltransferase MRM2 [Pichia angusta DL-1]
          Length = 315

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 7/120 (5%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR--R 70
           LT++   +S  GSS  W+ R   D Y + A+   +++R+A+KLLQI+EK  I    R   
Sbjct: 13  LTRRYSKKS--GSSHRWIQRQRTDLYTRDAKHYDYKSRAAFKLLQIDEKFGIFSQERISN 70

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           I+DLG++PG+WSQVA       +N   ++ +D+L  +P  G    + + L   + E I++
Sbjct: 71  ILDLGAAPGAWSQVALERCRKGSN---ILGVDLLVYQPPNGSSSMQANILSKKTHENIKE 127



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 21/107 (19%)

Query: 137 DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D++LSDM  P                     T G    DH  +M LC+AA   ++++L  
Sbjct: 192 DVILSDMYVPFPQIGGFANQTTNMPYIRMANTSGLSFRDHAMSMDLCDAALITSIDLLKK 251

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           GG+ + K F G     +   L   F+KVI  KP A R ES E + + 
Sbjct: 252 GGNSVFKFFTGKDDKFLEKRLTHVFRKVIRFKPKACRPESKECYFVC 298


>gi|68171915|ref|ZP_00545234.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67998660|gb|EAM85393.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 131

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D++LSDMA    G++++DH   ++LCE +    +      G F+ K  QG    +    +
Sbjct: 31  DVILSDMAPKACGNKQVDHANIINLCEISLDIVVRFTRENGVFITKILQGEYEKEFYQSM 90

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K +FQ V + KP ASR +S EM+L+  GF+K
Sbjct: 91  KTYFQSVKYFKPKASRKDSSEMYLVGLGFKK 121


>gi|58260402|ref|XP_567611.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229692|gb|AAW46094.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1277

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR----ITGS 91
           D Y ++ +  G+RARSAYKLL ++E+  +  +    VDL ++PGSWSQV  +     +  
Sbjct: 12  DVYYRKGKSAGYRARSAYKLLHLDEEFDLFTNVHTAVDLCAAPGSWSQVLGQKLKPKSKQ 71

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGH 150
               TRVV+ D+  M P+  +   + D     +   +  A+GG   DLV+ D A    G 
Sbjct: 72  GGEGTRVVSCDLQPMAPLPNITTLQTDITLPSTIPLVLDALGGRKADLVVCDGAPDVTGV 131

Query: 151 RKID 154
             +D
Sbjct: 132 HDLD 135


>gi|261326415|emb|CBH09375.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 432

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 22/106 (20%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQV-------- 84
           D Y ++A+ EG+RARSAYKLLQ++E+  IL+       +VDL ++PGSWSQV        
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQLHEEFGILRREEIRTGVVDLCAAPGSWSQVLSNHLCGS 69

Query: 85  -----AARITGSNANNT------RVVAIDILDMEPILGVKFFKFDF 119
                A    G  A N+      R+VA+D+ +M PI GV+  + D 
Sbjct: 70  QPGSAAEACEGDEAINSEASQRPRIVAVDLQEMMPIDGVQLLQGDI 115



 Score = 43.1 bits (100), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%)

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           R   G   DLV+ D A    G  ++D      L  AA      +L  GG F+ K F+G  
Sbjct: 214 RPVAGRKADLVVCDGAPDVTGMHELDEYLQHHLLLAALNITTFVLRRGGTFVTKMFRGPN 273

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           T  ++   +  F++V   KP +SR  S+E F++ + +
Sbjct: 274 TPFLVAKAEVFFRQVTIAKPKSSRNASMEAFMVCQNY 310


>gi|134117409|ref|XP_772598.1| hypothetical protein CNBK3020 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255215|gb|EAL17951.1| hypothetical protein CNBK3020 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1267

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR----ITGS 91
           D Y ++ +  G+RARSAYKLL ++E+  +  +    VDL ++PGSWSQV  +     +  
Sbjct: 12  DVYYRKGKSAGYRARSAYKLLHLDEEFDLFTNVHTAVDLCAAPGSWSQVLGQKLKPKSKQ 71

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGH 150
               TRVV+ D+  M P+  +   + D     +   +  A+GG   DLV+ D A    G 
Sbjct: 72  GGEGTRVVSCDLQPMAPLPNITTLQTDITLPSTIPLVLDALGGRKADLVVCDGAPDVTGV 131

Query: 151 RKID 154
             +D
Sbjct: 132 HDLD 135


>gi|84043514|ref|XP_951547.1| ribosomal RNA methyltransferase [Trypanosoma brucei TREU927]
 gi|33348376|gb|AAQ15702.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62358698|gb|AAX79154.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei]
          Length = 432

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 22/106 (20%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQV-------- 84
           D Y ++A+ EG+RARSAYKLLQ++E+  IL+       +VDL ++PGSWSQV        
Sbjct: 10  DIYYRKAKEEGYRARSAYKLLQLHEEFGILRREEIRTGVVDLCAAPGSWSQVLSNHLCGS 69

Query: 85  -----AARITGSNANNT------RVVAIDILDMEPILGVKFFKFDF 119
                A    G  A N+      R+VA+D+ +M PI GV+  + D 
Sbjct: 70  QPGSAAEACEGDEAINSEASQRPRIVAVDLQEMMPIDGVQLLQGDI 115



 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%)

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           D+    R   G   DLV+ D A    G  ++D      L  AA      +L  GG F+ K
Sbjct: 208 DAGASTRPVAGRKADLVVCDGAPDVTGMHELDEYLQHHLLLAALNITTFVLRRGGTFVTK 267

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            F+G  T  ++   +  F++V   KP +SR  S+E F++ + +
Sbjct: 268 MFRGPNTPFLVAKAEVFFRQVTIAKPKSSRNASMEAFMVCQNY 310


>gi|321264303|ref|XP_003196869.1| hypothetical protein CGB_K4110C [Cryptococcus gattii WM276]
 gi|317463346|gb|ADV25082.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 1315

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR----ITGS 91
           D Y ++ +  G+RARSAYKLL ++E+  +    +  VDL ++PGSWSQV  +     +  
Sbjct: 12  DVYYRKGKSAGYRARSAYKLLHLDEEFDLFSHVQTAVDLCAAPGSWSQVLGQKLKPKSKH 71

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGH 150
               TRVV+ D+  M P+  +   + D     +   +  A+GG   DLV+ D A    G 
Sbjct: 72  GGEGTRVVSCDLQPMAPLPNITTLQTDITLPSTIPLVLDALGGRKADLVVCDGAPDVTGV 131

Query: 151 RKID 154
             +D
Sbjct: 132 HDLD 135


>gi|4539291|emb|CAB39594.1| putative protein [Arabidopsis thaliana]
 gi|7269423|emb|CAB81383.1| putative protein [Arabidopsis thaliana]
          Length = 821

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S   ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  ---GSLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K         +  LL + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKMCVPEPFFLLAFLLVQLFEKVEVFK 183

Query: 208 PVASRAESVEMFLL 221
           P ASR+ S E +L+
Sbjct: 184 PPASRSASAETYLV 197


>gi|70933062|ref|XP_737958.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56513783|emb|CAH75136.1| hypothetical protein PC000546.00.0 [Plasmodium chabaudi chabaudi]
          Length = 92

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 16 KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
          K+ N+    SS+ W+ R I D YV +A+ E +R+R+A+KL++++ K+  L+ N+ I+D+G
Sbjct: 23 KIYNKKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDIG 81

Query: 76 SSPGSWSQV 84
          S PGSW QV
Sbjct: 82 SYPGSWCQV 90


>gi|291336704|gb|ADD96245.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C1388]
          Length = 111

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 47/63 (74%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S ++W+N+H  D YV+ +Q   +R+R+ +KL +I EK+ I +S++ I+DLGS+PGSWS+ 
Sbjct: 40  SIKNWVNKHSKDRYVKLSQTGNYRSRAFHKLHEIQEKYSIFKSSQNILDLGSAPGSWSEY 99

Query: 85  AAR 87
            +R
Sbjct: 100 VSR 102


>gi|156043163|ref|XP_001588138.1| hypothetical protein SS1G_10584 [Sclerotinia sclerotiorum 1980]
 gi|154694972|gb|EDN94710.1| hypothetical protein SS1G_10584 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 281

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 67/252 (26%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  R   D + + A+++G ++R+A+KLL++  +    +   RI+ +   P    +  + I
Sbjct: 19  WKTRQGRDSFSRDAKVQGLKSRAAFKLLEVAVER--TKPGGRILGIDIIPAQPPKGVSTI 76

Query: 89  TG---------------SNANNTR----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
            G               S+ +  R    + A D  D+EP       +  +L+L+      
Sbjct: 77  QGNFLSTGVQESVKQFLSDPDRGRPRKSLFADDAEDIEP-------EPSYLELERHMDDN 129

Query: 130 QAIGGNP------------------DLVLSDMAYP---------------------TIGH 150
            A  G+                   D+VLSDM  P                     T G 
Sbjct: 130 NATAGDHVGKKRGRAPEEQDEGKIVDVVLSDMCEPWKQTAGFWKRSLSDPYFRMMNTTGI 189

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           +  DH  +M LC AA  FA + L  GG F+ K +QG     +   LKK F  V   KP +
Sbjct: 190 KFSDHAGSMDLCAAALRFAFDTLKPGGHFVCKFYQGSEDKQLELQLKKLFSAVHREKPES 249

Query: 211 SRAESVEMFLLA 222
           SR+ES E F +A
Sbjct: 250 SRSESKEAFFVA 261


>gi|295698487|ref|YP_003603142.1| ribosomal RNA large subunit methyltransferase J [Candidatus Riesia
           pediculicola USDA]
 gi|291157412|gb|ADD79857.1| ribosomal RNA large subunit methyltransferase J [Candidatus Riesia
           pediculicola USDA]
          Length = 161

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R++DLGS PG WS  +++I G   +   +++ DI  M+PI  V FF+ D  D  +   + 
Sbjct: 2   RVIDLGSYPGGWSLYSSKIVGRLGH---IISCDIKPMDPIKNVHFFQGDVFDRSTITRLS 58

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
             +     ++LSDM     G   ID  +   L E        ML   G  ++K F G   
Sbjct: 59  DNLKFPAHVILSDMCPNITGISIIDIPKCFLLTEKVIEICKFMLIPEGSCILKMFYGKNF 118

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++    ++  F  V   KP +S  +S E++++AK F+
Sbjct: 119 SNQYQKIRNIFSSVKIRKPHSSIKQSNEIYIIAKRFK 155


>gi|145638914|ref|ZP_01794522.1| cell division protein [Haemophilus influenzae PittII]
 gi|145271886|gb|EDK11795.1| cell division protein [Haemophilus influenzae PittII]
          Length = 123

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M+PI+GV F + DF D +    +   +G +  D+V+SDMA    G   +D  R M L E 
Sbjct: 1   MDPIVGVDFLQGDFRDENVLNALLARVGEDKVDVVMSDMAPNFSGMPSVDIPRAMYLVEL 60

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A     ++L   G F+VK FQG   ++ L  ++  F  V   KP ASR  S E++++A G
Sbjct: 61  ALDMCKQVLANKGSFVVKVFQGEGFDEYLREIRSLFNVVKVRKPEASRGRSREVYIVATG 120

Query: 225 FR 226
           ++
Sbjct: 121 YK 122


>gi|312379916|gb|EFR26060.1| hypothetical protein AND_08114 [Anopheles darlingi]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHL 156
           V+ +D+L    I  ++    DFL  ++ + +R  +G    D VLSDMA    G R +D  
Sbjct: 98  VIGVDLLQ---IYLIEPSTLDFLRQETQDKLRATLGDRRLDCVLSDMAPNATGFRALDQE 154

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
              +LC +   FAL M +     L+K +  G    +   + +++  V  VKP ASR +S 
Sbjct: 155 NVTTLCYSVLRFALLMSSPKASLLMKIWDNGDVPKLEKSINEYYDSVKRVKPRASRNDSS 214

Query: 217 EMFLLAKGFR 226
           E F+LA+GFR
Sbjct: 215 ENFILARGFR 224


>gi|145539966|ref|XP_001455673.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423481|emb|CAK88276.1| unnamed protein product [Paramecium tetraurelia]
          Length = 437

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--GV 112
           L ++N +  +L+    +++LGS  G W++   +  GSN  + +V AID + +      GV
Sbjct: 14  LTELNARFGLLKKGMSVIELGSGSGHWTETLRKTIGSNREDPKVFAIDEVQLPKRCRDGV 73

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            F + D    ++   +++ +   P DL++S++   +   R ID+   + L   A   AL+
Sbjct: 74  IFIQGDVDKKETIMKLQKQLDLKPVDLIISNLESRSQNDRDIDNFEQIRLNRIALNIALK 133

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            L  GG  L+K  +G         +   F++ I V+P  ++ + ++ + L  GF++
Sbjct: 134 TLKTGGTMLIKAREGLPEEQNFKFINLFFRETIKVRPQTAKLDFLKHYYLGLGFKQ 189


>gi|71033419|ref|XP_766351.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353308|gb|EAN34068.1| hypothetical protein TP01_0830 [Theileria parva]
          Length = 373

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 45/203 (22%)

Query: 69  RRIVDLGSSPGSWSQVAARI------TGSNA----NNTR---------------VVAIDI 103
           + +VDL S+PGSWSQ+ +++      T  NA     N R               +VAIDI
Sbjct: 129 KNVVDLCSAPGSWSQLLSKMVHQDHRTLKNACRKLQNEREVCKNLVEYVNIKPVIVAIDI 188

Query: 104 LDMEPILGVKFFKFDFLDLDSWE------------FIRQAIGGNPD--------LVLSDM 143
             M PI GV F K D  D +  +             I +A GG  +        L+  D 
Sbjct: 189 QQMAPIDGVHFLKGDITDPEILQQVLQLFIENVSRNINEAYGGECNEKLGRSAQLITCDG 248

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  + D      L ++A      +L+  G F+ KTF       I   +   F   
Sbjct: 249 APDISGLHETDSFLQSYLIKSALSVCFSLLDPDGCFICKTFFSSENTPIFTQVSSFFDYC 308

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR+ S E F++A G++
Sbjct: 309 TIFKPSASRSSSFEHFIVAVGYK 331



 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
          D Y ++A+ EG+RARSAYKLLQI E   IL
Sbjct: 10 DIYYRKAKEEGFRARSAYKLLQIFESFHIL 39


>gi|22326560|ref|NP_568086.2| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|332002930|gb|AED90313.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
          [Arabidopsis thaliana]
          Length = 61

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 31 NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
          +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQ
Sbjct: 5  SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57


>gi|115380659|ref|ZP_01467590.1| ribosomal RNA large subunit methyltransferase J [Stigmatella
           aurantiaca DW4/3-1]
 gi|115362334|gb|EAU61638.1| ribosomal RNA large subunit methyltransferase J [Stigmatella
           aurantiaca DW4/3-1]
          Length = 165

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF--- 127
           ++DLG++PG + Q+ A   G +    RV+ +DI+ + P    K      LD+ + +F   
Sbjct: 1   MLDLGAAPGGFLQILADTVGLSG---RVIGVDIVAIRP-FPQKHVTTAVLDVLADDFDAR 56

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           +R    G  D V+SDMA  T G +  D  R++ L   A   A+E    G  F+ K F GG
Sbjct: 57  LRALYEGPLDAVISDMAPKTSGIKATDEARSLRLAGKALEVAVERGRPGSSFVAKLFMGG 116

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                   ++  + +V  V+P A+R  S+E++L+
Sbjct: 117 DFEAFRDQVRASYDEVKVVRPEATRGASMEVYLV 150


>gi|240277959|gb|EER41466.1| 2'-O-ribose methyltransferase [Ajellomyces capsulatus H143]
 gi|325096021|gb|EGC49331.1| 2-O-ribose methyltransferase [Ajellomyces capsulatus H88]
          Length = 379

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----------------- 136
            N ++VAID+  M P+ G+   K D     +   + +A+  +                  
Sbjct: 125 KNVKIVAIDLQPMTPLDGITCLKADITHPSTIPLLLEALDPDDYTHNDTLTTTSISHRLH 184

Query: 137 --DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I  
Sbjct: 185 PVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYA 244

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            LK  F+ V   KP +SRA S+E F++ +GF
Sbjct: 245 QLKTVFETVSVAKPRSSRASSLEAFVVCEGF 275



 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 5/58 (8%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI 88
          D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+
Sbjct: 10 DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSNPDSVTRVVDLCAAPGSWSQVLSRV 67


>gi|255075125|ref|XP_002501237.1| predicted protein [Micromonas sp. RCC299]
 gi|226516501|gb|ACO62495.1| predicted protein [Micromonas sp. RCC299]
          Length = 238

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 49/238 (20%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           +R   D + + A+  G+ ARSA KL +I ++  +++    ++DLG  PG+W+QVA+    
Sbjct: 3   SRKTADFFAREAKKLGYAARSALKLKEIQDRFGVMRPGDAVLDLGCHPGAWTQVASERGA 62

Query: 88  --ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD--SWEFIRQAIGGNP------- 136
             + G +   TR  A+    ++P         D  DLD  +   +  + G +P       
Sbjct: 63  GSVVGVDLTTTRSDALGP-RVDPRR-TTLTVADVFDLDPPALRALCGSGGASPASRSRPF 120

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL-------------------------- 170
             VLSDMA  T G    D   +  L E A   AL                          
Sbjct: 121 AAVLSDMAPSTSGDGVKDAALSYELAEQAVRLALGARALAVLDGDDDDDDREGDRDGDGH 180

Query: 171 -----EMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                 +L  GG  +VK  +  GG  +D+  + K  F+ V   +P A+R ES E+FL+
Sbjct: 181 LEHDPGVLRKGGSLVVKLLEGPGGGRDDLQRVCKPQFESVKWFRPRATRRESREVFLV 238


>gi|116201505|ref|XP_001226564.1| hypothetical protein CHGG_08637 [Chaetomium globosum CBS 148.51]
 gi|88177155|gb|EAQ84623.1| hypothetical protein CHGG_08637 [Chaetomium globosum CBS 148.51]
          Length = 957

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQVAARIT 89
           R   DPY +   ++G ++R+A+KL++++ K+   +    + +VDLG +PGSWSQVA   T
Sbjct: 684 RQSGDPYARARHVKGLKSRAAFKLIELDAKYSFFRRGQGQVVVDLGYAPGSWSQVAVDYT 743

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
             N     V+ IDI+  +P  GV   + +FL       ++Q +
Sbjct: 744 APNGT---VLGIDIIPAQPPRGVSTIQGNFLSPGVQRMVKQVL 783



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           LC AA  FA E L  GG F+ K +QG        LL++ F++V   KP ASR ES E F 
Sbjct: 881 LCHAALTFASETLKPGGSFVCKFYQGAEDKAFENLLRQMFRRVHREKPDASRKESREAFF 940

Query: 221 LAK 223
           +A+
Sbjct: 941 VAR 943


>gi|261205268|ref|XP_002627371.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis SLH14081]
 gi|239592430|gb|EEQ75011.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis SLH14081]
          Length = 405

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 23/155 (14%)

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----------------- 136
            N ++VAID+  M P+ G+   K D     +   + +A+  +                  
Sbjct: 129 KNVKIVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYTHDTSSTNNTTTKTPH 188

Query: 137 ------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   +
Sbjct: 189 HHPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVD 248

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            I   LK  F+KV   KP +SRA S+E F++ +GF
Sbjct: 249 LIYAQLKTVFEKVSVAKPRSSRASSLEAFVVCEGF 283



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 5/58 (8%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI 88
          D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+
Sbjct: 10 DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRV 67


>gi|239611411|gb|EEQ88398.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis ER-3]
          Length = 405

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 23/155 (14%)

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----------------- 136
            N ++VAID+  M P+ G+   K D     +   + +A+  +                  
Sbjct: 129 KNVKIVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYTHDTSSTNNTTTKTPH 188

Query: 137 ------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   +
Sbjct: 189 HHPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVD 248

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            I   LK  F+KV   KP +SRA S+E F++ +GF
Sbjct: 249 LIYAQLKTVFEKVSVAKPRSSRASSLEAFVVCEGF 283



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 5/58 (8%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI 88
          D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+
Sbjct: 10 DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRV 67


>gi|218197285|gb|EEC79712.1| hypothetical protein OsI_21019 [Oryza sativa Indica Group]
          Length = 868

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA       A 
Sbjct: 10  QDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPVGAF 69

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----DLVLSDMAYPTIGH 150
              VV +D++ + PI G      D         +R+ +  N     D+VL D +    G 
Sbjct: 70  ---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGA 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
              +     SL   A   A   L   G F+ K F+    N I+  LK+
Sbjct: 127 WAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQ 174


>gi|298711156|emb|CBJ32381.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 405

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMA 144
            R+  +     R+VA+D+  M PI GVK  + D   + + E  I    GG  +LV+ D A
Sbjct: 168 GRVKDTEEEEVRIVAVDLQGMAPIEGVKQLQGDITSVKTAEAIIDHFRGGLAELVVCDGA 227

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   ID      L  AA      +L+ GG F+ K F+G  ++ +   L+  F++V 
Sbjct: 228 PDVTGLHDIDEYLQAQLLLAALNITAHVLSPGGTFVAKIFRGRDSSLLYSQLRLLFERVT 287

Query: 205 HVKPVASRAESVEMFLLAK 223
             KP +SR+ S+E F++ +
Sbjct: 288 IAKPRSSRSSSIEAFVVCR 306



 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 38/51 (74%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
          D + ++A+  G+RARSA+KLLQ++E+  + +   + VDL ++PGSWSQV A
Sbjct: 10 DMFYRKAKEVGFRARSAFKLLQLDEEFGLFEGVTKAVDLCAAPGSWSQVLA 60


>gi|257206228|emb|CAX82765.1| putative calcium channel, voltage-dependent, L type, alpha 1D
           subunit [Schistosoma japonicum]
          Length = 87

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 6/80 (7%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-----RRIVDLGSSPGSWSQV- 84
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL S       R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 85  AARITGSNANNTRVVAIDIL 104
           + R+  S + + R   + I 
Sbjct: 65  SKRLWESKSPDDRKSVLPIF 84


>gi|226287509|gb|EEH43022.1| ribosomal RNA methyltransferase MRM2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 622

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 12/107 (11%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R   D Y + A ++G ++R+A+KLLQIN+KH+I +  + +VDL         
Sbjct: 415 SSSKRWQARQAKDRYSREAIVKGLKSRAAFKLLQINDKHKIFKLGQSVVDL--------- 465

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           VA  +T  N    RVV +DI+  +P  GV   + +FL      ++++
Sbjct: 466 VAVELTQPNG---RVVGVDIIPAQPPKGVSTIQGNFLSPQVQAYVQE 509


>gi|145638913|ref|ZP_01794521.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittII]
 gi|145271885|gb|EDK11794.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittII]
          Length = 84

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K RS   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++
Sbjct: 4   KKRSA--SSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAA 61

Query: 78  PGSWSQ-VAARITGSNANNTRVVAIDI 103
           PG WSQ V ++I G      RV+A DI
Sbjct: 62  PGGWSQYVVSQIGGKG----RVIACDI 84


>gi|196018641|ref|XP_002118844.1| hypothetical protein TRIADDRAFT_34847 [Trichoplax adhaerens]
 gi|190578007|gb|EDV18669.1| hypothetical protein TRIADDRAFT_34847 [Trichoplax adhaerens]
          Length = 96

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 51/86 (59%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           +++LSDMA  T G R ++H+  M+L E+   F+ + L+  G  ++K F+G    +    L
Sbjct: 7   NVILSDMAPNTSGTRSLNHINIMNLAESVFDFSQQFLSKNGHMIIKLFEGNKNKEFYNKL 66

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLA 222
           +KHF+ V   KP AS  +S E+F++ 
Sbjct: 67  RKHFKNVHFFKPEASYKDSSEIFIVG 92


>gi|302662114|ref|XP_003022716.1| hypothetical protein TRV_03177 [Trichophyton verrucosum HKI 0517]
 gi|291186676|gb|EFE42098.1| hypothetical protein TRV_03177 [Trichophyton verrucosum HKI 0517]
          Length = 783

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 34/193 (17%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+                             
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEK---------------------------- 44

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI- 153
              + +D+  ++PI  V  F+ D         IRQ       D VL D A P +G   + 
Sbjct: 45  ---IGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGA-PNVGTAWVQ 100

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR 
Sbjct: 101 DAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRN 160

Query: 214 ESVEMFLLAKGFR 226
            S E+F++  GF+
Sbjct: 161 VSAEIFVVCLGFK 173


>gi|297183084|gb|ADI19228.1| 23S rRNA methylase [uncultured delta proteobacterium HF0200_14D13]
          Length = 128

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 123 DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           D +E   + +   P D++LSDMA  T G R +D  R+ +L +     + + L  GG+ LV
Sbjct: 22  DVFELTLEQLPPEPFDMILSDMAPRTSGVRSMDADRSYALNQQVLGLSGKHLKSGGNLLV 81

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K FQG     +    ++ F++V   KP +SR+ESVE+FLL  G RK
Sbjct: 82  KAFQGAPFEQLRKDFREVFEEVRICKPRSSRSESVEVFLL--GLRK 125


>gi|326928915|ref|XP_003210618.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like, partial
           [Meleagris gallopavo]
          Length = 147

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 98  VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDH 155
           V+ +D+L + P+ G  F  + D  D  +   I+  +     D++LSDMA    G +++DH
Sbjct: 15  VIGVDLLRISPLEGAVFLSQVDITDPRTQRAIQNLLPAEKVDVILSDMAPNATGIKELDH 74

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            + + LC      +  +L   G  L K + G  +  +   LK+ FQ V  +KP +SR +S
Sbjct: 75  QKLIGLCLGLVNLSESILKPKGTILCKFWDGHESRVLQNKLKEQFQNVRTIKPQSSRKDS 134

Query: 216 VEMFLLAKGFR 226
            E + LA+ ++
Sbjct: 135 SESYYLARLYK 145


>gi|328858221|gb|EGG07334.1| hypothetical protein MELLADRAFT_28887 [Melampsora larici-populina
           98AG31]
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 45/232 (19%)

Query: 24  GSSRDWLNRHINDPYVQ-RAQLEG---WRARSAYKLLQINEKHQILQSNRR----IVDLG 75
            SS+ +L R   D Y + +    G   + ARSA+KL  +++  ++   +      ++DLG
Sbjct: 3   SSSKRFLRRAQTDTYGKTKCSNRGEKVYVARSAHKLNSLDQTLKLFSKHYHGTMNVLDLG 62

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVKFFKFDFLDLDSWEF 127
           +SPG W++V             ++A D+L        D+     + F + DFL+ +    
Sbjct: 63  ASPGGWTEV-------------LIACDLLPLSRSIYVDVPSNTKLSFIQGDFLNQEIQYK 109

Query: 128 IRQAIGGN---------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA---LEMLNI 175
           I +A+  N         P ++LSD+     G    D   ++ LC + +  A   L+   I
Sbjct: 110 IIEALQSNLQPKPNPSIPTIILSDLLGSMSGIPIKDAQNSLDLCLSVSQLAQTVLQETQI 169

Query: 176 GG----DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            G      ++K  Q G T+++   LK +++ V  +KP+ASR+ES E + +A+
Sbjct: 170 EGHEDDTLVIKHIQSGLTDELRNHLKSNWKSVRWIKPLASRSESREGYFIAR 221


>gi|225561788|gb|EEH10068.1| AdoMet-dependent rRNA methyltransferase spb1 [Ajellomyces
           capsulatus G186AR]
          Length = 779

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           SW QVAA    S    + ++ +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 7   SWCQVAAECMPSQ---SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADT 63

Query: 139 VLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           VL D A P +G   + D      L   +   A E L  GG F+ K F+    N +L + K
Sbjct: 64  VLHDGA-PNVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFK 122

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F  V   KP +SR  S E+F++ +GF+
Sbjct: 123 QLFNTVEATKPPSSRNVSAEIFVVCQGFK 151


>gi|325091232|gb|EGC44542.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           capsulatus H88]
          Length = 779

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           SW QVAA    S    + ++ +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 7   SWCQVAAECMPSQ---SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADT 63

Query: 139 VLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           VL D A P +G   + D      L   +   A E L  GG F+ K F+    N +L + K
Sbjct: 64  VLHDGA-PNVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFK 122

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F  V   KP +SR  S E+F++ +GF+
Sbjct: 123 QLFNTVEATKPPSSRNVSAEIFVVCQGFK 151


>gi|67900880|ref|XP_680696.1| hypothetical protein AN7427.2 [Aspergillus nidulans FGSC A4]
 gi|40742817|gb|EAA62007.1| hypothetical protein AN7427.2 [Aspergillus nidulans FGSC A4]
          Length = 675

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 20/106 (18%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS+ W  R + D Y + A ++G ++R+A+KLLQ                 G +PGSWSQ
Sbjct: 484 SSSKRWQARQLKDHYTREAAVQGLKSRAAFKLLQ-----------------GYAPGSWSQ 526

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           VA   T       RV+ +DI+  +P  GV   + +FLD +   ++R
Sbjct: 527 VALTRTRPAG---RVLGVDIIPSQPPKGVSTIQGNFLDPEVQAYVR 569


>gi|258567254|ref|XP_002584371.1| AdoMet-dependent rRNA methyltransferase spb-1 [Uncinocarpus reesii
           1704]
 gi|237905817|gb|EEP80218.1| AdoMet-dependent rRNA methyltransferase spb-1 [Uncinocarpus reesii
           1704]
          Length = 768

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           SW QVAA    ++   + +V +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 18  SWCQVAAECMPTD---SLIVGVDLSPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADT 74

Query: 139 VLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           VL D A P +G   + D      L   +   A E L  GG F+ K F+    N +L + K
Sbjct: 75  VLHDGA-PNVGTAWVQDAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFK 133

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F  V   KP +SR  S E+F++ +GF+
Sbjct: 134 QLFTSVEATKPPSSRNVSAEIFVVCRGFK 162


>gi|189201217|ref|XP_001936945.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187984044|gb|EDU49532.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 306

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDF------------LDLDSWEFIRQAIGGNP-DLVL 140
              R+VAID+  M P+ GV   + D             LD D+++      G +P DLV+
Sbjct: 32  EGVRIVAIDLQPMSPLEGVTTMRADITHPSTIPLMLKALDPDTYD-PNATTGSSPVDLVI 90

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F
Sbjct: 91  SDGAPDVTGLHDLDIYVQSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKIVF 150

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           ++V   KP +SRA S+E F++ +GF
Sbjct: 151 ERVRVAKPRSSRASSIEAFVVCEGF 175


>gi|240275390|gb|EER38904.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           capsulatus H143]
          Length = 779

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           SW QVAA    S +    ++ +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 7   SWCQVAAECMPSQSI---IIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADT 63

Query: 139 VLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           VL D A P +G   + D      L   +   A E L  GG F+ K F+    N +L + K
Sbjct: 64  VLHDGA-PNVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFK 122

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F  V   KP +SR  S E+F++ +GF+
Sbjct: 123 QLFNTVEATKPPSSRNVSAEIFVVCQGFK 151


>gi|298712535|emb|CBJ26803.1| putative ribosomal RNA methyltransferase 2 [Ectocarpus siliculosus]
          Length = 575

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           PG+         V   +  GSS  W+ RH+ DPYV  A   G  +R+A+KL++IN++H +
Sbjct: 74  PGAGKSGAGGTAVGRATKGGSSGLWMRRHLKDPYVSAAIEAGAPSRAAFKLVEINDRHGV 133

Query: 65  LQSNRRIVDLGSSPGSWSQV--------------AARITGSNANNTRVVAIDILDMEPIL 110
           L +  R                            AA   G       VVA+D+LDME  L
Sbjct: 134 LSAGDRAPASRGGGSRGGGAPPALPPPLPEGRLEAAERKGGRGRGAVVVAVDLLDMEADL 193

Query: 111 -GVKFFKFDFLD 121
            GV+  + DF D
Sbjct: 194 PGVQAIRGDFRD 205



 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +L  GG FL K F G    ++    ++ F++V  VKP ASR+ S EM+LLA GF
Sbjct: 515 LLARGGTFLGKFFAGRDEREVKEEAERLFERVKVVKPPASRSGSGEMYLLATGF 568


>gi|326490970|dbj|BAJ98120.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 85

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG--------SNANNTRV 98
           +RARSAYKLLQI++   I Q  +R+VDL  +PGSWSQV  +  G              R+
Sbjct: 2   YRARSAYKLLQIDDIFHIFQDVQRVVDLCGAPGSWSQVCRKKLGEKGLFASREEGQGERI 61

Query: 99  VAIDILDMEPI 109
           V++D+ +  PI
Sbjct: 62  VSVDLQETAPI 72


>gi|124506721|ref|XP_001351958.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|23504986|emb|CAD51769.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 507

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 99/289 (34%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQ---------SNRR-------------IVD 73
           D Y ++A+  G+RARS++KL+QINEK  IL+         +N +             IVD
Sbjct: 10  DIYYRKAKESGYRARSSFKLIQINEKFGILKLFKPDIYNCNNEKDLINIYNEHYCYNIVD 69

Query: 74  LGSSPG------------SWSQVAARITGSNANNT------------------------- 96
           L ++PG            ++ Q+   I   N N                           
Sbjct: 70  LCAAPGSWSQVLKNICLYNYYQILYMINKYNNNENIKNIQHEEFLNKFSLYINYNEELEN 129

Query: 97  ---------------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPD-- 137
                           +VA+D+ ++  +  VK  + D   + + + I + +    N D  
Sbjct: 130 KIKNLKIKCSNIKEPNIVAVDLQEIGNMNYVKIIQGDITKMSTIDKILKCMNNKINSDEE 189

Query: 138 ---------------------LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                                 V+SD A    G   ID      L  ++      +L +G
Sbjct: 190 NVNVFYNMEQQKKENNFSYAHTVVSDGAPDITGMNDIDEFIQSQLILSSLKVCCSVLKVG 249

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G+F+ K F+G  T  ++  L K FQ+V   KP +SR +S+E FL+   F
Sbjct: 250 GNFISKIFRGEHTGLLILHLNKFFQRVYICKPQSSRNKSLESFLVCLNF 298


>gi|327348578|gb|EGE77435.1| tRNA (Uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 396

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 23/150 (15%)

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP----------------- 136
            N ++VAID+  M P+ G+   K D     +   + +A+  +                  
Sbjct: 135 KNVKIVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYTHDTSSTNNTTTKTPH 194

Query: 137 ------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   +
Sbjct: 195 HHPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVD 254

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFL 220
            I   LK  F+KV   KP +SRA S+E F+
Sbjct: 255 LIYAQLKTVFEKVSVAKPRSSRASSLEAFV 284



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 5/58 (8%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEK-----HQILQSNRRIVDLGSSPGSWSQVAARI 88
          D Y + A+ + WRARSA+KL+QI+E+     H    S  R+VDL ++PGSWSQV +R+
Sbjct: 10 DAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVLSRV 67


>gi|226294107|gb|EEH49527.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 776

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           SW QVAA    S    + +V +D+  ++PI  V  F+ D         IRQ       D 
Sbjct: 7   SWCQVAAECMPSQ---SLIVGVDLAPIKPIPKVITFQSDITTDKCRATIRQHFKSWKADT 63

Query: 139 VLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           VL D A P +G   + D      L   +   A E L  GG F+ K F+    N +L + K
Sbjct: 64  VLHDGA-PNVGVAWVQDAFSQAELVLQSLKLATEFLAPGGTFVTKVFRSKDYNPLLWVFK 122

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F  V   KP +SR  S E+F++  GF+
Sbjct: 123 QLFTSVKATKPPSSRNVSAEIFVVCLGFK 151


>gi|38048043|gb|AAR09924.1| similar to Drosophila melanogaster CG5220 [Drosophila yakuba]
          Length = 191

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYP 146
           T       +++A+D+  M PI G+   + D     + E I    GGN    LV+ D A  
Sbjct: 11  TDDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPD 70

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    
Sbjct: 71  VTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIY 130

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F++   F
Sbjct: 131 KPPSSRPSSIEAFVVCSDF 149


>gi|153827666|ref|ZP_01980333.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-2]
 gi|149737860|gb|EDM52765.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-2]
          Length = 93

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  +
Sbjct: 3   DVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAV 62

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F+ V   KP +SR+ S E+F++A G++
Sbjct: 63  RDLFKVVKIRKPDSSRSRSREVFIVATGYK 92


>gi|82596865|ref|XP_726438.1| cell division protein FtsJ [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481849|gb|EAA18003.1| FtsJ cell division protein [Plasmodium yoelii yoelii]
          Length = 125

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN- 94
           D Y + A+  G+RARSA+KL+QI +K+ I ++   ++DL ++PG W QVA +    N N 
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAKKYNIFKNANILIDLCAAPGGWLQVAYK----NMNK 68

Query: 95  NTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIG 149
           N+ ++ +D++ +  I   V   K D    +    I+  I     D++L+D A P +G
Sbjct: 69  NSTIIGVDLVPIRKIDNNVITIKSDITSSECIRKIKDIIKYEKADVILNDGA-PNVG 124


>gi|300708035|ref|XP_002996206.1| hypothetical protein NCER_100740 [Nosema ceranae BRL01]
 gi|239605486|gb|EEQ82535.1| hypothetical protein NCER_100740 [Nosema ceranae BRL01]
          Length = 171

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 20/124 (16%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KLLQ+N+K+  L+  + ++DL ++PG W QVAA+        
Sbjct: 13  DKYYNLAKEKGYRARSAFKLLQLNKKYGFLKDAKILIDLCAAPGGWLQVAAQ---EMPRP 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLD----------LDSWEFIRQAIGGNPDLVLSDMAY 145
            +++ ID+  ++ I  V+ F  D             L   EF RQA     D++L D A 
Sbjct: 70  RKIIGIDLDPIKYIGDVETFVCDITSDECRKRLYGMLSDTEF-RQA-----DVILHDGA- 122

Query: 146 PTIG 149
           P +G
Sbjct: 123 PNVG 126


>gi|154288380|ref|XP_001544985.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408626|gb|EDN04167.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 259

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 23/112 (20%)

Query: 137 DLVLSDMAYP---TIG---------HRKI---------DHLRTMSLCEAATFFALEMLNI 175
           D+VLSDM+ P   T G         +R++         DH  +M LC AA  F+  +L  
Sbjct: 129 DVVLSDMSAPWEQTTGFWKKSLSDPYRRMMNTSGMSFRDHAGSMDLCRAALEFSFNVLKT 188

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + +  G R+
Sbjct: 189 GGHFVCKFYQGAEDKALERQLKELFQTVHREKPESSRSESKEAYFI--GLRR 238


>gi|70933466|ref|XP_738102.1| ribosomal RNA methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56514043|emb|CAH74365.1| ribosomal RNA methyltransferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 97

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DHL +  L  + T F  + +NIGG ++VK + G  T+++   LK  FQ V   KP ASR+
Sbjct: 3   DHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTDNLKTYLKTIFQYVNTAKPKASRS 62

Query: 214 ESVEMFLLAKGF 225
           ES E++L+ + F
Sbjct: 63  ESREIYLVCRNF 74


>gi|331232420|ref|XP_003328872.1| cell division protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307862|gb|EFP84453.1| cell division protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 332

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 87/291 (29%)

Query: 24  GSSRDWLNRHINDPYVQ---RAQLE-GWRARSAYKLLQINEKHQIL--------QSNRRI 71
           G S+ +L R   DPY +   RA+ E  + ARSA+KL+Q++++ +I         ++  R+
Sbjct: 37  GQSKQFLRRAETDPYGKTKSRARGEPTYVARSAHKLIQLDQQFRIFPTPARSSPRTGFRV 96

Query: 72  VDLGSSPGSWSQVA-------------------------------ARITGSNANNTRVVA 100
           +DLG++PG WS+V                                 R   S  +  R+VA
Sbjct: 97  LDLGAAPGGWSEVVLERLAHLHSHPAISSSPSPSAPSETPPSNHNLRARSSVNHQHRLVA 156

Query: 101 IDILDMEPILGVKFFKF--------DFLDLD------SWEFIRQAIGGNPD--------- 137
            D+L + P +  K  K         DF+D           F   AI  + D         
Sbjct: 157 CDLLPLHPSIAPKVSKNVDFHAIQGDFMDTQVRAKIVELLFDSTAIAHDHDNQGLVPEES 216

Query: 138 --------------LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML--NIGGD--- 178
                         ++LSDM +   G    D   ++ L       A +++  N GG    
Sbjct: 217 RQEKETNDRRRTTTIILSDMLHSMTGIPTRDSQNSLDLSVTVADLARDLIPPNPGGSRAS 276

Query: 179 --FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              ++K  Q   T+     L   +  V  VKP+ASR+ES E + + +G RK
Sbjct: 277 DTLILKHLQSEFTHQFRDRLLAEWSLVKWVKPLASRSESREGYFVTRGRRK 327


>gi|324525209|gb|ADY48522.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 121

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 106 MEPILGVKFFKF-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           M P+ GV      D    ++   I+Q + G + D V+SDMA    G + +DH R ++LCE
Sbjct: 1   MVPLAGVDLITMADITSPETHHRIKQYLSGRSVDAVVSDMAPNPSGDKTVDHERIIALCE 60

Query: 164 AATFF-----ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
               F     A+  L  GG FL K + G     ++  LK +F  V ++KP ASR  S E+
Sbjct: 61  QLLSFCCGNAAVIPLKKGGTFLCKIWDGQRRLQLIESLKGYFHIVHNIKPDASRDHSAEL 120

Query: 219 F 219
           +
Sbjct: 121 Y 121


>gi|302498226|ref|XP_003011111.1| hypothetical protein ARB_02633 [Arthroderma benhamiae CBS 112371]
 gi|291174659|gb|EFE30471.1| hypothetical protein ARB_02633 [Arthroderma benhamiae CBS 112371]
          Length = 253

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTM-------SLCEAATFFALEMLNIGGDFLVKTFQG 186
           G+ D++LSDM   T G +  DHL +M        LC AA  FA  +L  GG F+ K +QG
Sbjct: 117 GSVDVILSDMLMNTSGTKSRDHLGSMVCVELPEELCNAALDFASNVLKEGGHFVCKYYQG 176

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESV 216
               D    LK+ F +V   KP +SR+ S+
Sbjct: 177 PGEKDFENELKRLFHRVYREKPESSRSVSL 206


>gi|115400479|ref|XP_001215828.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Aspergillus terreus
           NIH2624]
 gi|114191494|gb|EAU33194.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Aspergillus terreus
           NIH2624]
          Length = 474

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 95  NTRVVAIDILDMEPILGVKFFKFDF------------LDLDSWEFIRQAIGG----NP-D 137
           N ++V+ID+  M P+ G+   K D             LD D+++    +       +P D
Sbjct: 16  NVKIVSIDLQPMAPLEGITTLKADITHPSTIPLLLRALDPDAYDSSSASPSALRPPHPVD 75

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LV+SD A    G   +D      L  AA   AL +L  GG F+ K F+G   + I   L+
Sbjct: 76  LVISDGAPDVTGLHDLDIYIQSQLLYAALNLALGVLRPGGKFVAKIFRGRDVDIIYAQLR 135

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
             F+KV   KP +SRA S+E F++ +GF
Sbjct: 136 TVFEKVSVAKPRSSRASSLESFVVCEGF 163


>gi|156086912|ref|XP_001610863.1| rRNA methyltransferase [Babesia bovis T2Bo]
 gi|154798116|gb|EDO07295.1| rRNA methyltransferase, putative [Babesia bovis]
          Length = 339

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 100/284 (35%), Gaps = 93/284 (32%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQI------------------------------- 64
           D Y ++A+ +G+RARS YKL+QI + + I                               
Sbjct: 10  DVYYRKAKEDGYRARSVYKLIQIFQAYGIFHPIARIEQVTEILRNAKCKHCCPGDNLANV 69

Query: 65  -----------------LQSNRRIVDLGSSPGSWSQV--------------AARITGSN- 92
                            L   R +VDL ++PGSW+Q               AA+    N 
Sbjct: 70  RKFDILEQRGNSYDCSSLPRIRNVVDLCAAPGSWTQCIRDFVYNEYFVYKDAAKNLAENN 129

Query: 93  --------ANNTR--VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------- 135
                   + N +  ++A+D+ +M P+ GV+  K D  +    E I+     N       
Sbjct: 130 TLCVKKVESCNLKPVIIAVDLQEMAPVKGVQILKGDITNEQVMEKIKNLFVENVSKRLLE 189

Query: 136 -------------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
                          ++  D A    G  + D      L  AA      +L+  G F+ K
Sbjct: 190 TTEDNSELADSSLAQIITCDGAPDVSGVHQTDAYVQSCLIRAAISVCSAILDPNGLFVCK 249

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F   +   I   +   F      KP ASR  S E F++A+GF+
Sbjct: 250 AFCNDSDAPIYRHVNIFFDDFSIHKPAASRLTSAECFVIARGFK 293


>gi|51476892|emb|CAH18412.1| hypothetical protein [Homo sapiens]
          Length = 92

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%)

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G R +DH R +SLC        ++L  GG FL KT+ G  +  +   L + FQ 
Sbjct: 1   MAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQN 60

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V  +KP ASR ES E++ LA  +
Sbjct: 61  VRIIKPEASRKESSEVYFLATQY 83


>gi|258575121|ref|XP_002541742.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Uncinocarpus reesii
           1704]
 gi|237902008|gb|EEP76409.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Uncinocarpus reesii
           1704]
          Length = 245

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   L
Sbjct: 54  DLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQL 113

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K  F++V   KP +SRA S+E F++ +GF
Sbjct: 114 KTVFERVSVAKPRSSRASSLEAFVVCEGF 142


>gi|213052989|ref|ZP_03345867.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 88

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  ++ 
Sbjct: 1   VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 60

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKG 224
            F KV   KP +SRA S E++++A G
Sbjct: 61  LFTKVKVRKPDSSRARSREVYIVATG 86


>gi|322701264|gb|EFY93014.1| cell division protein ftsj, putative [Metarhizium acridum CQMa 102]
          Length = 257

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 101/248 (40%), Gaps = 61/248 (24%)

Query: 8   SSRR----GLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           SSRR      T K   R    +SR W  R   D + + A+++G ++R+A+KLL+++ K++
Sbjct: 20  SSRRLAAATFTPKADVRWSSSNSR-WKQRQGRDVFSREAKVQGLKSRAAFKLLEMDSKYR 78

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           + +  + +VDL       +Q   R  G      RV+ ID++  +P  GV  F+ DFL   
Sbjct: 79  LFKPGQTVVDL------VAQERTRPHG------RVIGIDLIPAQPPRGVATFQGDFLSPS 126

Query: 124 SWEFIRQAIG--GNP-----------------------------------DLVLSDMAYP 146
               +R+ I   G P                                   D+VLSDM+ P
Sbjct: 127 VQRLVREFIARTGRPVEKVERGDDGETMSYIDRERRASEEREGNGTSASVDVVLSDMSAP 186

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL-CLLKKHFQKVIH 205
                     R MS      +  L M   G  F       G+ +  L   LK+ F KV  
Sbjct: 187 W-----NQSFRYMSNTLTNPYRRL-MNTSGVAFRDHAGSMGSEDKKLEARLKRMFAKVFR 240

Query: 206 VKPVASRA 213
            KP +SR+
Sbjct: 241 EKPESSRS 248


>gi|71896315|ref|NP_001026096.1| putative rRNA methyltransferase 3 [Gallus gallus]
 gi|53130786|emb|CAG31722.1| hypothetical protein RCJMB04_10b6 [Gallus gallus]
          Length = 767

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKI-DH 155
           V+ +D++ ++PI  V   + D       + +R+ +     D+VL+D A P +G   + D 
Sbjct: 7   VIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGA-PNVGASWVHDA 65

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
               +L   A   A E L  GG F+ K F+      +L + ++ F KV   KP ASR ES
Sbjct: 66  YSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQASRNES 125

Query: 216 VEMFLLAKGFR 226
            E+F++ +G++
Sbjct: 126 AEIFVVCQGYQ 136


>gi|22788745|ref|NP_690456.1| putative methyl transferase [Heliothis zea virus 1]
 gi|22671505|gb|AAN04332.1|AF451898_36 putative methyl transferase [Heliothis zea virus 1]
          Length = 943

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSS 77
           ++C+     W N    D  +   + +    R  +KL ++++      SN     +DL + 
Sbjct: 149 KNCKSKLPTWNN---TDETINMVRSQSCINRCFFKLAEMDQLSNFRLSNDAGLFMDLCAG 205

Query: 78  PGSWSQVAARITGSNAN---NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG- 133
           PG +++       SN       R + + I  +     VK +  D L+    +  R  +G 
Sbjct: 206 PGGFTEYLTYKNWSNFGIVLQHRDLPVQIEKLPNPAAVKVYTVDLLNAHDRDRFRHDMGI 265

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              DLV++D +    G   +       L  A    A + + +GG+F++KTF    TN +L
Sbjct: 266 VKVDLVVADGSIDCRGRENLQEPLNYDLIRAQVDVAFDHIKVGGNFVLKTFD-AFTNQML 324

Query: 194 CL---LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L   +  HF++   VKP  SR  + E +++A  ++
Sbjct: 325 NLYYEIYSHFEEFTVVKPNTSRPANAERYIVAMNYK 360


>gi|322704731|gb|EFY96323.1| cell division protein ftsj, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 288

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 80/250 (32%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLL----------------QINEKHQILQSNRRIVDL 74
            R + D + + A+++G ++R+A+KLL                Q++ KH++ +  + IVDL
Sbjct: 46  QRQVRDAFSRGAKVQGLKSRAAFKLLEVIYTAPPTNISSNALQMDSKHRLFKPGQTIVDL 105

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG- 133
                  +Q   R  G      RV+ ID++  +P  GV  F+ DFL       +R+ I  
Sbjct: 106 ------VAQERTRPHG------RVIGIDLIPAQPPRGVATFQGDFLSPGVQRLVREFIAR 153

Query: 134 -GNP-----------------------------------DLVLSDMAYP---TIGHRKID 154
            G P                                   D+VLSDM+ P   T G+    
Sbjct: 154 TGRPVEKVERGEEGETMSYIDRERRASEEREGNGTSASVDVVLSDMSAPWDQTSGY---- 209

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
                 +    T     ++N  G          G         LKK F KV   KP +SR
Sbjct: 210 ------MSNTLTNPYRRLMNTSGVAFRDHAGSMGSEDKKFEARLKKMFAKVFREKPESSR 263

Query: 213 AESVEMFLLA 222
           +ES E + +A
Sbjct: 264 SESKEAYFIA 273


>gi|323509097|dbj|BAJ77441.1| cgd4_1580 [Cryptosporidium parvum]
          Length = 491

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHR-KI 153
           ++++ +D++ ++ I GV  FK D       + I   + G P D+VL D A P +G     
Sbjct: 5   SKIIGVDLVAIKGIPGVTTFKCDITTERCRKLIFDELNGIPVDVVLHDGA-PNVGTSWDK 63

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A E+L   G F+ K F+    N +L +L + F  V   KP +SR 
Sbjct: 64  DAYIQNELVLHSAELACEILRPNGIFVTKVFRSTDYNSVLWVLSQLFNTVKATKPQSSRN 123

Query: 214 ESVEMFLLAKGFR 226
            S E+FL+  G++
Sbjct: 124 VSAEIFLVCLGYK 136


>gi|22549506|ref|NP_689284.1| hypothetical protein [Mamestra configurata NPV-B]
 gi|22476685|gb|AAM95091.1| hypothetical protein [Mamestra configurata NPV-B]
          Length = 275

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------GSNANNTRVVAIDI 103
           R  YKL +I+EK  + +     VDL   PG +++    +       G +  N      D 
Sbjct: 39  RCYYKLKEIDEKFNVCRDVDTFVDLCGGPGQFAKYVFMMNPDCVGYGVSLRNDCDYTFDH 98

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                I G  F   D  D +    +        +LV++D A+   G        T+SL  
Sbjct: 99  EHFRKIYGC-FDSGDIFDANVMFELMYFCRKQCNLVVADGAFDVSGRENDQETLTLSLLR 157

Query: 164 AATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +  LE+L  GG+ ++K F      T  +L     +F +    KP  SRA + E +L+
Sbjct: 158 KECYIILEVLRTGGNCVLKIFDTFNRATISLLQSFIANFNEFYFYKPTHSRAANSEKYLV 217

Query: 222 AKG 224
            KG
Sbjct: 218 CKG 220


>gi|302409280|ref|XP_003002474.1| ribosomal RNA methyltransferase MRM2 [Verticillium albo-atrum
           VaMs.102]
 gi|261358507|gb|EEY20935.1| ribosomal RNA methyltransferase MRM2 [Verticillium albo-atrum
           VaMs.102]
          Length = 202

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH+ +M LC AA  FA + L  GG F+ K +QG    ++   L+K F KV   KP +SR 
Sbjct: 116 DHVGSMDLCYAALQFASDTLKPGGHFVCKFYQGAEDKELEKQLRKLFAKVFRDKPESSRK 175

Query: 214 ESVEMFLLA 222
           +S E + + 
Sbjct: 176 DSKEGYFVG 184


>gi|115456267|ref|NP_001051734.1| Os03g0822300 [Oryza sativa Japonica Group]
 gi|108711810|gb|ABF99605.1| FtsJ-like methyltransferase family protein, putative, expressed
          [Oryza sativa Japonica Group]
 gi|113550205|dbj|BAF13648.1| Os03g0822300 [Oryza sativa Japonica Group]
 gi|218194004|gb|EEC76431.1| hypothetical protein OsI_14112 [Oryza sativa Indica Group]
 gi|222626068|gb|EEE60200.1| hypothetical protein OsJ_13158 [Oryza sativa Japonica Group]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
          D + + AQ  G+ ARSA+KL+QI ++H+++     ++DLG +PG+W QVA +  G
Sbjct: 9  DFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLG 63


>gi|310799165|gb|EFQ34058.1| FtsJ-like methyltransferase [Glomerella graminicola M1.001]
          Length = 328

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 137 DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+VLSDM+ P                     T G    DH  +M LC  A  FA + L  
Sbjct: 210 DVVLSDMSAPWDQTSGFGVNSLSNPYSRMMNTSGMAFRDHAGSMDLCGVALQFANDTLRN 269

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           GG F+ K +QG    +    LK  F KV   KP +SR++S E + +A
Sbjct: 270 GGHFVCKFYQGSEDREFEKKLKTLFAKVFREKPESSRSDSKEAYFVA 316



 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 13/123 (10%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R  L    + R+   +SR W  R   D + + A+++G ++R+A+KLL+++ K+++ +  +
Sbjct: 30  RINLAASRQTRASSSNSR-WKMRQGRDMFAREAKVQGLKSRAAFKLLEMDAKYKLFRKGQ 88

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
            +VDL         VA   T  N    +++ IDI+  +P  GV   + +FL  D  + ++
Sbjct: 89  TVVDL---------VAVERTKPNG---QILGIDIIPAQPPKGVSTIQGNFLSPDVQDMVK 136

Query: 130 QAI 132
           + +
Sbjct: 137 EYL 139


>gi|261327754|emb|CBH10731.1| rRNA methyltransferase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 284

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 45/224 (20%)

Query: 47  WRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTR------V 98
           +R RSAYKLL++++K  +    +R +VDL ++PG +S+VA  R+T +    +R      V
Sbjct: 2   YRCRSAYKLLELDDKFSLFGGCSRTVVDLAAAPGGFSEVALQRMTAAEDVTSRPPVKPLV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLD-----LDSWEFI-RQAIGGNP----DLVLSDMAYPTI 148
           +A D   M+    +   + +  D         EFI R+ +G       D+VL D      
Sbjct: 62  IAFDTRPMKAARDLHVVQCNINDHKRVIASVEEFIQRRGVGDGADRQVDVVLHDGVSVAK 121

Query: 149 GHRKI------DHLRTMSLCEAATFFALEMLNIGG---------------------DFLV 181
            H         + +   +L  A   F L     G                       F+ 
Sbjct: 122 SHSAFSVTYAQNQMAVGALRLACALFLLSSQPAGTRQPPRAEDGLASSSKAEPQGPTFVT 181

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K  +    N +L  +K +F+ V   +P    A S E +++A+GF
Sbjct: 182 KAMRSAHFNQVLSAMKAYFRHVSVHRPAECNAASSETYVVARGF 225


>gi|70952953|ref|XP_745609.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525987|emb|CAH74337.1| hypothetical protein PC000044.00.0 [Plasmodium chabaudi chabaudi]
          Length = 165

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 22/82 (26%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQ----SN------------------RRIVD 73
          D Y ++A+  G+RARS+YKL+QIN+K +I +    SN                    IVD
Sbjct: 10 DIYYRKAKENGYRARSSYKLIQINDKFEIFKLFNPSNYNNNDIGVVVNKYNDEFCYNIVD 69

Query: 74 LGSSPGSWSQVAARITGSNANN 95
          L ++PGSWSQV   I   N  N
Sbjct: 70 LCAAPGSWSQVLKNICLYNYYN 91


>gi|198425300|ref|XP_002121619.1| PREDICTED: similar to FtsJ methyltransferase domain containing 2
           [Ciona intestinalis]
          Length = 797

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            V++D  +   G   I  + T  L       AL +L +GG+F++KTF   T  +N ++ L
Sbjct: 318 FVMADGGFSVEGQENIQEILTKQLLMCQIVCALSILRVGGNFVLKTFDLFTPFSNGLIYL 377

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+  F+ V   KPV SR  + E + + +G+R
Sbjct: 378 LRIAFENVAIYKPVTSRPANSERYAVCQGYR 408


>gi|215401335|ref|YP_002332639.1| hypothetical protein HaMNV_gp103 [Helicoverpa armigera multiple
           nucleopolyhedrovirus]
 gi|198448835|gb|ACH88625.1| hypothetical protein HaMNV_gp103 [Helicoverpa armigera multiple
           nucleopolyhedrovirus]
          Length = 271

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------GSNANNTRVVAIDI 103
           R  YKL +I+EK  + +     VDL   PG +++    +       G +  N      D 
Sbjct: 39  RCYYKLKEIDEKFNVCRDVDTFVDLCGGPGQFAKYLFTMNPDCVGYGVSLRNDCDYTFDH 98

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                I G  F   D  D +    +        +LV++D A+   G        T+SL  
Sbjct: 99  EHFRKIYGC-FDSGDIFDANVMFELMYFCRKQCNLVVADGAFDVSGRENDQETLTLSLLR 157

Query: 164 AATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +  LE+L  GG+ ++K F      T  +L     +F +    KP  SRA + E +L+
Sbjct: 158 KECYIILEVLRTGGNCVLKIFDTFNRATISLLQSFIANFNEFYFYKPSHSRAANSEKYLV 217

Query: 222 AKG 224
            KG
Sbjct: 218 CKG 220


>gi|27545053|gb|AAO18459.1| putative FtsJ cell division protein [Oryza sativa Japonica Group]
          Length = 403

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
          D + + AQ  G+ ARSA+KL+QI ++H+++     ++DLG +PG+W QVA +  G
Sbjct: 9  DFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLG 63


>gi|68072251|ref|XP_678039.1| ribosomal RNA methyltransferase [Plasmodium berghei strain ANKA]
 gi|56498377|emb|CAH98756.1| ribosomal RNA methyltransferase, putative [Plasmodium berghei]
          Length = 487

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 22/82 (26%)

Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQ---SNR-------------------RIVD 73
          D Y ++A+  G+RARS+YKL+QIN+K +I +    N+                    IVD
Sbjct: 10 DIYYRKAKENGYRARSSYKLIQINDKFEIFKLFNPNKYNNSDISEIIKKYNDEYCYNIVD 69

Query: 74 LGSSPGSWSQVAARITGSNANN 95
          L ++PGSWSQV   I   N  N
Sbjct: 70 LCAAPGSWSQVLKNICLYNYYN 91



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD A    G   ID      L  ++      +L IGG+F+ K F+G  T+ ++  L K
Sbjct: 227 VVSDGAPDITGMNDIDEFIQSQLILSSLKVCCSVLKIGGNFISKIFRGEYTSLLIFHLNK 286

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F+K+   KP +SR +S+E FL+   F
Sbjct: 287 FFEKIYVCKPQSSRNKSLESFLVCLNF 313


>gi|72388286|ref|XP_844567.1| rRNA methyltransferase [Trypanosoma brucei TREU927]
 gi|62175370|gb|AAX69513.1| rRNA methyltransferase, putative [Trypanosoma brucei]
 gi|62359681|gb|AAX80113.1| hypothetical protein Tb04.30K5.570 [Trypanosoma brucei]
 gi|70801100|gb|AAZ11008.1| rRNA methyltransferase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 284

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 45/224 (20%)

Query: 47  WRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTR------V 98
           +R RSAYKLL++++K  +     R +VDL ++PG +S+VA  R+T +    +R      V
Sbjct: 2   YRCRSAYKLLELDDKFSLFGGCCRTVVDLAAAPGGFSEVALQRMTAAEDVTSRPPVKPLV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLD-----LDSWEFI-RQAIGGNP----DLVLSDMAYPTI 148
           +A D   M+    +   + +  D         EFI R+ +G       D+VL D      
Sbjct: 62  IAFDTRPMKAARDLHVVQCNINDHKRVIASVEEFIQRRGVGDGADRQVDVVLHDGVSVAK 121

Query: 149 GHRKI------DHLRTMSLCEAATFFALEMLNIGG---------------------DFLV 181
            H         + +   +L  A   F L     G                       F+ 
Sbjct: 122 SHSAFSVTYAQNQMAVGALRLACALFLLSSQPAGTRQPPRAEDGLASSSKAEPQGPTFVT 181

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K  +    N +L  +K +F+ V   +P    A S E +++A+GF
Sbjct: 182 KAMRSAHFNQVLSAMKAYFRHVSVHRPAECNAASSETYVVARGF 225


>gi|218677613|ref|ZP_03525510.1| putative ribosomal RNA methyltransferase/cell division FtsJ protein
           [Rhizobium etli CIAT 894]
          Length = 42

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/31 (74%), Positives = 30/31 (96%)

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K++F++V+HVKP ASRAESVEMFLLAKGF+
Sbjct: 1   MKQNFRQVVHVKPNASRAESVEMFLLAKGFK 31


>gi|146277080|ref|YP_001167239.1| hypothetical protein Rsph17025_1033 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555321|gb|ABP69934.1| hypothetical protein Rsph17025_1033 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 57

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K   GG  N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 1   MAKVLAGGAENELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 47


>gi|124487850|gb|ABN12008.1| Ftsj homolog 1-like protein [Maconellicoccus hirsutus]
          Length = 206

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSD 142
           ++ R+  + +   ++VA+D+  M P+ GV   + D  +L + + I         +LV+ D
Sbjct: 3   LSTRLRKNTSVEPKIVAVDLQPMAPVPGVIQIQGDITELSTVKKILSYFENELIELVVFD 62

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      L  AA      +L  GG F+ K F+G     +   L   F+ 
Sbjct: 63  GAPDVTGIHDLDEFVQGQLLLAAVNITTFLLKPGGSFIGKIFRGSDNALLKSQLLLFFKD 122

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           VI  KP +SR  S+E F++ +GF
Sbjct: 123 VIITKPRSSRNSSMESFVVCRGF 145


>gi|327275748|ref|XP_003222634.1| PREDICTED: putative rRNA methyltransferase 3-like [Anolis
           carolinensis]
          Length = 771

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           D+VL+D A P +G R   D     +L  +A   A + L+ GG F+ K F+      +L +
Sbjct: 22  DVVLNDGA-PNVGARWFPDAFSQANLTLSALKLACDFLSKGGWFITKVFRSRDYQPLLWI 80

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F+KV   KP ASR ES E+F++ +G+
Sbjct: 81  FQQLFRKVQATKPQASRNESAEIFVVCQGY 110


>gi|296419711|ref|XP_002839439.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635592|emb|CAZ83630.1| unnamed protein product [Tuber melanosporum]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M P+ GV   + D     +   + + +G  P DLV+SD A    G   +D      L  A
Sbjct: 1   MTPLPGVTTLQADITHPSTLPLLLRHLGNKPADLVISDGAPDVTGLHDLDEYIQSQLLLA 60

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A   A  +L  GG F+ K F+G     +   L+  F +V   KP +SR  S+E F++ +G
Sbjct: 61  ALNLATCVLKPGGGFVAKIFRGRDVAIVFAQLRCLFDRVTCAKPRSSRGSSIEAFVVCEG 120

Query: 225 F 225
           +
Sbjct: 121 Y 121


>gi|15617533|ref|NP_258333.1| hypothetical protein [Spodoptera litura NPV]
 gi|15553269|gb|AAL01747.1|AF325155_59 unknown [Spodoptera litura NPV]
          Length = 313

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 27/201 (13%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R  YKL QIN+K ++    R  +DL   PG + +    +   +     V   + LD +  
Sbjct: 57  RCFYKLKQINDKFKVCDDIRTYLDLCGGPGQFVRYLNAVNDESVLGFGVTLRNHLDYDKS 116

Query: 110 LGVKF---FKFDFLD-----------------LDSWEFIRQAI---GGNPDLVLSDMAYP 146
           +  +F   F   + D                 + S   +RQ +   GG  D V +D A+ 
Sbjct: 117 IVKRFADRFTRIYGDETKSSSGDGDGGNGSGDIMSESVVRQIVSKCGGRCDFVCADGAFD 176

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK---TFQGGTTNDILCLLKKHFQKV 203
             G        T+ L        L  L++GG+ +VK   TF+  T N +L    K+F++ 
Sbjct: 177 VTGDENRQEFLTLPLIRRECELILSCLSVGGNCVVKVFDTFESDTRN-VLGDFVKNFEEY 235

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              KP +SR  + E +L+ K 
Sbjct: 236 HVFKPESSRVCNSERYLVCKN 256


>gi|291334187|gb|ADD93854.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
 gi|291336828|gb|ADD96362.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C727]
          Length = 121

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
           M+ I GV F K D   L     I   +    DLVLSD+A    G   +D    + + E+ 
Sbjct: 1   MKKIKGVHFIKGDINKLADRSQIYAKMN-KADLVLSDIAPNISGIEDVDQANFVEILESI 59

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                ++L I G  ++K F G + +     LK+ F KV   KP +SR  S E+F +  G+
Sbjct: 60  LSICSDLLKINGVLVMKFFIGSSYDFSRGKLKQSFSKVATYKPDSSRRSSNEVFFVCNGY 119

Query: 226 R 226
           +
Sbjct: 120 K 120


>gi|289615348|emb|CBI57934.1| unnamed protein product [Sordaria macrospora]
          Length = 328

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 17/148 (11%)

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFL--------------DLDSWEFIRQAIGGNP-DL 138
              ++V+ID+  + P+ G+   + D                D D     +QA   +P DL
Sbjct: 74  EQVKIVSIDLQPISPLPGIITLRADITHPATVPLLLKALDPDFDPSTMNQQA--SHPVDL 131

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK 
Sbjct: 132 VISDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKV 191

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+KV   KP +SRA SVE F++   F+
Sbjct: 192 FFEKVYVAKPRSSRASSVEAFIVCINFQ 219


>gi|125860210|ref|YP_001036380.1| putative methyltransferase [Spodoptera frugiperda MNPV]
 gi|120969355|gb|ABM45798.1| putative methyltransferase [Spodoptera frugiperda MNPV]
 gi|167833769|gb|ACA02645.1| MET [Spodoptera frugiperda MNPV]
 gi|319997423|gb|ADV91321.1| methyltransferase [Spodoptera frugiperda MNPV]
          Length = 266

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-- 105
           R R   K+  I+EK+ + ++    +DL   PG +++    +     +   V   +  D  
Sbjct: 37  RNRCYLKIKDIDEKYNVCKNVETFLDLCGGPGQFAKYVFDVNNHECSGYGVTLRNHCDYT 96

Query: 106 MEPILGVKFFK-FDFLDLDSWEFIRQAIG---GNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
            + +L  K +  FD  D+     + + +    G  DLV++D A+   G+       +  L
Sbjct: 97  FDHVLFRKMYGCFDTGDIFDANVVFELMYFCRGKCDLVVADGAFDVKGNENNQESLSYPL 156

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK--KHFQKVIHVKPVASRAESVEMF 219
                   L  L  GG+ ++K F    ++ I  L +   HF +    KP+ASRA + E +
Sbjct: 157 IAKECMIILGALRTGGNCVLKIFDTFESSTISLLQEFISHFDEHYLYKPLASRAANAEKY 216

Query: 220 LLAKG 224
           L+ KG
Sbjct: 217 LVCKG 221


>gi|25144487|ref|NP_498461.2| hypothetical protein Y40D12A.1 [Caenorhabditis elegans]
 gi|20198897|gb|AAC26945.2| Hypothetical protein Y40D12A.1a [Caenorhabditis elegans]
          Length = 635

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQ 185
           I+Q + G  DLV +D +  T G          SL  A    AL++L   G  ++KT  F 
Sbjct: 207 IKQKLAGTFDLVTADGSTNTQGKEGEIESIVSSLISAEVEVALKLLRRNGRLILKTYRFC 266

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +T D++ LL  +F  +  +KP+ASR  S E +++  GF
Sbjct: 267 AKSTRDVMNLLADNFSSIKAIKPMASRPGSSERYIVCDGF 306


>gi|20069990|ref|NP_613194.1| hypothetical protein McnAVgp111 [Mamestra configurata NPV-A]
 gi|20043384|gb|AAM09219.1| unknown [Mamestra configurata NPV-A]
 gi|33331822|gb|AAQ11130.1| hypothetical protein [Mamestra configurata NPV-A]
          Length = 275

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 9/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------GSNANNTRVVAIDI 103
           R  +KL +I+EK  + +     VDL   PG +++            G    N      D 
Sbjct: 39  RCYHKLKEIDEKFNVCRDVDTFVDLCGGPGQFAKYVFSTNPDCVGYGVTLRNDCDYTFDH 98

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                I G  F   D  D +    +        +LV++D A+   G        T+SL  
Sbjct: 99  KHFRKIYGC-FDSGDIFDANVMFELMYFCRKRCNLVVADGAFDVSGRENDQETLTLSLLR 157

Query: 164 AATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +  LE+L  GG+ ++K F      T  +L     +F +    KP  SRA + E +L+
Sbjct: 158 KECYIILEVLRAGGNCVLKIFDTFNRATISLLQSFIVNFDEFYFYKPTHSRAANSEKYLV 217

Query: 222 AKG 224
            KG
Sbjct: 218 CKG 220


>gi|156097180|ref|XP_001614623.1| ribosomal RNA methyltransferase [Plasmodium vivax SaI-1]
 gi|148803497|gb|EDL44896.1| ribosomal RNA methyltransferase, putative [Plasmodium vivax]
          Length = 526

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD A    G   ID      L  ++      +L IGG+F+ K F+G  T  ++  L K
Sbjct: 211 VVSDGAPDITGMNDIDEFIQSQLILSSLKVCCSVLKIGGNFISKIFRGEHTGLLILHLNK 270

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F++V   KP +SR +S+E FL+   F
Sbjct: 271 FFERVYVCKPQSSRNKSLESFLVCLNF 297



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 22/81 (27%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ------------------SNR-- 69
          L++   D Y ++A+  G+RARS++KL+QINEK  I +                   N   
Sbjct: 4  LSKDRRDIYYRKAKENGYRARSSFKLIQINEKFGIFKLFDPQRCGEKEKDKIGSIYNENF 63

Query: 70 --RIVDLGSSPGSWSQVAARI 88
             +VDL ++PGSWSQV   I
Sbjct: 64 CYNVVDLCAAPGSWSQVLKNI 84


>gi|198477577|ref|XP_002136545.1| GA23223 [Drosophila pseudoobscura pseudoobscura]
 gi|198142832|gb|EDY71545.1| GA23223 [Drosophila pseudoobscura pseudoobscura]
          Length = 232

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M PI GV   + D     + E I +   G    LV+SD A  + G    D      L  +
Sbjct: 1   MAPIDGVHQLRADITKESTAEAIIEYFEGQKAQLVVSDGAPDSTGMHDFDVYMQGELLLS 60

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A   +  +L  GG  + K ++   T+ +   L++ F+ V   KP ASR  S+E F++A+ 
Sbjct: 61  ALSISTFILETGGSLVAKIYRADNTSRLYLQLQRFFKDVCVFKPSASRNSSIEAFVVARQ 120

Query: 225 F 225
           F
Sbjct: 121 F 121


>gi|68059132|ref|XP_671546.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56487824|emb|CAI03817.1| hypothetical protein PB301372.00.0 [Plasmodium berghei]
          Length = 325

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD A    G   ID      L  ++      +L IGG+F+ K F+G  T+ ++  L K
Sbjct: 123 VVSDGAPDITGMNDIDEFIQSQLILSSLKVCCSVLKIGGNFISKIFRGEYTSLLIFHLNK 182

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+K+   KP +SR +S+E FL+   F 
Sbjct: 183 FFEKIYVCKPQSSRNKSLESFLVCLNFH 210


>gi|145484697|ref|XP_001428358.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395443|emb|CAK60960.1| unnamed protein product [Paramecium tetraurelia]
          Length = 282

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHR 151
           + + R+V++D+ +M P+  V   + D     +  E +++      D+++ D A    G  
Sbjct: 93  SESCRIVSVDLQEMAPLDHVTQIQGDITKKTTVDEILKKFNYQRADIIVCDGAPDVTGFH 152

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID+     L  AA    L  L   G F+ K F+G     +    K  F +V  +KP +S
Sbjct: 153 DIDYYIQSQLIVAALNICLMTLRENGIFVAKIFKGSDIKLLYSQFKLFFNQVYFMKPKSS 212

Query: 212 RAESVEMFLLA 222
           RA SVE F++ 
Sbjct: 213 RASSVEYFIIC 223


>gi|221054440|ref|XP_002258359.1| ribosomal rna methyltransferase [Plasmodium knowlesi strain H]
 gi|193808428|emb|CAQ39131.1| ribosomal rna methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 534

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD A    G   ID      L  ++      +L IGG+F+ K F+G  T  ++  L K
Sbjct: 226 VVSDGAPDITGMNDIDEFIQSQLILSSLKVCCSVLKIGGNFISKIFRGEHTGLLILHLNK 285

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F++V   KP +SR +S+E FL+   F
Sbjct: 286 FFERVYVCKPQSSRNKSLESFLVCLNF 312



 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 22/81 (27%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEK--------------------HQILQSN- 68
          L++   D Y ++A+  G+RARS++KL+QINEK                      I   N 
Sbjct: 4  LSKDRRDIYYRKAKENGYRARSSFKLIQINEKFGIFKLFDPKNCGERDVEKIRNIYNENF 63

Query: 69 -RRIVDLGSSPGSWSQVAARI 88
             IVDL ++PGSWSQV   I
Sbjct: 64 CYNIVDLCAAPGSWSQVLKNI 84


>gi|71422720|ref|XP_812230.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876988|gb|EAN90379.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 357

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 44/230 (19%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTR- 97
           +  Q   +R RSA+KLL+++  + +     R +VDL ++PG ++QVA +     +  T  
Sbjct: 70  ESVQRRMYRCRSAHKLLELDAAYHLFAWPCRTVVDLAAAPGGFAQVALQRMACTSLPTST 129

Query: 98  ------VVAIDILDMEPILGVKFFKFDFLDLD-----SWEFIRQAIGGNP------DLVL 140
                 V+A D   +EP+ G+   K D  D       +   +R   G N        +VL
Sbjct: 130 EDVRPVVIAFDQRPIEPMEGLFSVKCDVNDHPRVMAYTARLLRTLQGENETQRKDVHVVL 189

Query: 141 SDMAYPTIGHRKI------DHLRTMSLCEAATFFALEMLNIG------GD---------- 178
            D      G          + +   +L  A +FFAL   +        GD          
Sbjct: 190 HDGVSVVKGQSLFSVTYGQNQMALGALRLAGSFFALHTHHTSARRLACGDVKHHDDNNRS 249

Query: 179 ---FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              F+ K       N +L   + +F  V   KP   + ES+E +++A+GF
Sbjct: 250 TRKFITKAMHSSHFNTLLEACQLYFYDVHVHKPSECKPESLETYIVARGF 299


>gi|213620974|ref|ZP_03373757.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 79

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%)

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  ++  F KV   KP
Sbjct: 2   GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKP 61

Query: 209 VASRAESVEMFLLAKG 224
            +SRA S E++++A G
Sbjct: 62  DSSRARSREVYIVATG 77


>gi|242037577|ref|XP_002466183.1| hypothetical protein SORBIDRAFT_01g003090 [Sorghum bicolor]
 gi|241920037|gb|EER93181.1| hypothetical protein SORBIDRAFT_01g003090 [Sorghum bicolor]
          Length = 233

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 33/45 (73%)

Query: 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
          G+ ARSA+KL+Q+ ++H+++     ++DLG +PG+W QVA +  G
Sbjct: 18 GYVARSAFKLIQMQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLG 62


>gi|189211395|ref|XP_001942028.1| cell division protein ftsj [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978121|gb|EDU44747.1| cell division protein ftsj [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 79

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           M LC AA  FA + L  GG F+ K ++G         +K+ F KV   KP +SRAES E 
Sbjct: 1   MDLCMAAMTFAFDTLKTGGHFVCKYYKGSEEKAFETRMKRLFAKVHREKPDSSRAESKEA 60

Query: 219 FLL 221
           + +
Sbjct: 61  YFV 63


>gi|209170985|ref|YP_002268132.1| agip102 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436576|gb|ACI28803.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 290

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 18/185 (9%)

Query: 53  YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---EPI 109
           +K+ +I++K  + ++    +DL   PG +++    +   +     V   +  D     P 
Sbjct: 49  FKIKEIDDKFTVCRNINVFLDLCGGPGQFAKYVFNVNDDDCLGFGVTLRNHCDYNFSHPN 108

Query: 110 LGVKFFKFDFLDL-------DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
               +  FD  D+       +   F R       DLVL+D A+   G        ++SL 
Sbjct: 109 FRKMYGCFDTGDIFDANVLFELMYFCRHKC----DLVLADGAFDVAGRENDQETLSLSLI 164

Query: 163 EAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK---HFQKVIHVKPVASRAESVEMF 219
                  LE L +GG  +VK F     N  + LL+    HF++    KP  SRA + E +
Sbjct: 165 RKECSVILEALRVGGSCVVKIFD-TFNNSTISLLRNFVGHFEQHHLYKPPHSRAANSEKY 223

Query: 220 LLAKG 224
           L+ KG
Sbjct: 224 LVCKG 228


>gi|29567139|ref|NP_818701.1| hypothetical protein AhnVgp054 [Adoxophyes honmai NPV]
 gi|29467915|dbj|BAC67305.1| hypothetical protein [Adoxophyes honmai NPV]
          Length = 275

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 16/189 (8%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW------SQVAARITGSNANNTRVVAI 101
           R R  +KL +I++K+ + Q  +  +DL   PG +      S    R  G   NN      
Sbjct: 36  RDRCYHKLHEIDKKYFVCQHVKTFIDLCGGPGQFAKYIFDSNFECRGYGVTLNNALRYQF 95

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS- 160
              +   I G       F     +E          DL+++D A    G+   +H  T++ 
Sbjct: 96  KNRNFTKIYGHDNSGNIFDTSVQFELQMLCENNTVDLIVADGAVDVSGNE--NHQETINF 153

Query: 161 -LCEAATFFALEMLNIGGDFLVKTFQGGTTND-ILCLLKK---HFQKVIHVKPVASRAES 215
            +        L++L + G+ +VK F   T ND  +CLL++   HF+     KP +SRA +
Sbjct: 154 LIINEECKIILKLLKVNGNCVVKVFD--TFNDETVCLLERFVTHFENSYIFKPSSSRAAN 211

Query: 216 VEMFLLAKG 224
            E +L+ K 
Sbjct: 212 SERYLVCKN 220


>gi|169600119|ref|XP_001793482.1| hypothetical protein SNOG_02889 [Phaeosphaeria nodorum SN15]
 gi|160705379|gb|EAT89620.2| hypothetical protein SNOG_02889 [Phaeosphaeria nodorum SN15]
          Length = 200

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 21/97 (21%)

Query: 137 DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+VLSDM+ P                     T G+   DH  +M LC AA  F+ + L  
Sbjct: 79  DVVLSDMSEPWDQTAGFYKKSLSDPYFRMMNTSGNAFRDHAGSMDLCMAALTFSYDTLKT 138

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           GG FL K +QG         LK+ F  V   KP +SR
Sbjct: 139 GGHFLCKFYQGTEEKAFETKLKRLFASVHREKPDSSR 175


>gi|291236302|ref|XP_002738079.1| PREDICTED: FtsJ methyltransferase domain containing 2-like
           [Saccoglossus kowalevskii]
          Length = 829

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 26/180 (14%)

Query: 71  IVDLGSSPG----------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
             D+ + PG          +W       T   AN+ ++   D     P L   ++  D +
Sbjct: 264 FADICAGPGGFSEYVLWRKNWHAKGFGFTLKGANDFKLE--DFFSTSPELFEPYYGVDGI 321

Query: 121 DLDS--------WEFIRQAI----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
           D D          EF R  +    G     V++D  +   G   I  + +  L       
Sbjct: 322 DGDGNIYRSDNLKEFQRFVLQNTDGKGVHFVMADGGFSVAGQENIQEILSKQLLLCQFLC 381

Query: 169 ALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           AL ++  GG+F+ KTF   T  +  ++ LL + FQ+V   KPV SR  + E +++ +G R
Sbjct: 382 ALSIIREGGNFVCKTFDLFTPFSVGLIYLLYRAFQRVTLFKPVTSRPANSERYVVCQGLR 441


>gi|209978826|ref|YP_002300569.1| hypothetical protein [Adoxophyes orana nucleopolyhedrovirus]
 gi|192758808|gb|ACF05343.1| hypothetical protein [Adoxophyes orana nucleopolyhedrovirus]
          Length = 275

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW------SQVAARITGSNANNTRVVAI 101
           R R  +KL +I++K+ + QS    +DL   PG +      S    R  G   NN      
Sbjct: 36  RDRCYHKLHEIDKKYFVCQSVNTFIDLCGGPGQFAKYIFDSNFECRGYGVTLNNALNYQF 95

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTM 159
              +   I G      +  D  S +F  Q +  N   DL+++D A    G+   +H  T+
Sbjct: 96  KNRNFTRIYGHD-NSGNIFDT-SVQFELQMLCENNAVDLIVADGAVDVSGNE--NHQETI 151

Query: 160 S--LCEAATFFALEMLNIGGDFLVKTFQGGTTND-ILCLLKK---HFQKVIHVKPVASRA 213
           +  +        L++L + G+ ++K F   T ND  +CLL+    HF+     KP +SRA
Sbjct: 152 NFLIISEECKIILKLLKVNGNCVIKVFD--TFNDETVCLLENFATHFENSYIFKPSSSRA 209

Query: 214 ESVEMFLLAKG 224
            + E +L+ K 
Sbjct: 210 ANSERYLVCKN 220


>gi|170052241|ref|XP_001862132.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167873157|gb|EDS36540.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 556

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVAS 211
           +H+  + L EA T  AL+ML  GG F++K F     T+ D+L LL   F ++   KP  S
Sbjct: 48  EHVAPLHLAEAVT--ALKMLTRGGSFILKMFTMFEHTSVDLLYLLYVCFDELNVFKPCTS 105

Query: 212 RAESVEMFLLAKGFRK 227
           +  + E++++AKG+R+
Sbjct: 106 KPGNSEVYVIAKGYRR 121


>gi|303390693|ref|XP_003073577.1| ribosomal RNA methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302724|gb|ADM12217.1| ribosomal RNA methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 152

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
           GV   K D         I +A+ G   DLV+ D A    G  +ID    + L  +A   +
Sbjct: 3   GVVCIKGDITSDSCLRSIVEALEGVLADLVMCDGAPDITGIHEIDEYLQIELLMSALSAS 62

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L +   G  F+ K  QG  T  ++   ++ +  V+ +KP ASR ES+E FL   G +
Sbjct: 63  LRISKPGSSFVGKCLQGKYTEWMINHFRRFYNGVVLLKPRASRTESMECFLYCVGMK 119


>gi|70922686|ref|XP_734470.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507240|emb|CAH84195.1| hypothetical protein PC300900.00.0 [Plasmodium chabaudi chabaudi]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 22/72 (30%)

Query: 46 GWRARSAYKLLQINEKHQILQ----SN------------------RRIVDLGSSPGSWSQ 83
          G+RARS+YKL+QIN+K +I +    SN                    IVDL ++PGSWSQ
Sbjct: 4  GYRARSSYKLIQINDKFEIFKLFNPSNYNNNDIGVVVNKYNDEFCYNIVDLCAAPGSWSQ 63

Query: 84 VAARITGSNANN 95
          V   I   N  N
Sbjct: 64 VLKNICLYNYYN 75


>gi|195995913|ref|XP_002107825.1| hypothetical protein TRIADDRAFT_51728 [Trichoplax adhaerens]
 gi|190588601|gb|EDV28623.1| hypothetical protein TRIADDRAFT_51728 [Trichoplax adhaerens]
          Length = 889

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           EF+R +  G     ++D  +   G   I  + +  L       A+ +L  GG+F+ K F 
Sbjct: 311 EFVRSSSEGGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLCAISVLREGGNFVCKLFD 370

Query: 186 GGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             T  +  +L L  + F+++  VKP+ SR  + E +++ +G+R
Sbjct: 371 IFTPFSVGLLYLFYRIFRRISLVKPLTSRPANSERYIVCEGYR 413


>gi|62914003|gb|AAH00131.2| FTSJ3 protein [Homo sapiens]
          Length = 734

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           HL  M+L  A  F A      GG F+ K F+      +L + ++ F++V   KP ASR E
Sbjct: 22  HLTLMALRLACDFLAR-----GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHE 76

Query: 215 SVEMFLLAKGF 225
           S E+F++ +GF
Sbjct: 77  SAEIFVVCQGF 87


>gi|2695746|emb|CAA11034.1| Pmt2 [Schizosaccharomyces pombe]
          Length = 663

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            A E L  GG F+ K F+    N++L + K+ F KV   KP +SR  S E+F++ +G++
Sbjct: 5   LACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYK 63


>gi|90592813|ref|YP_529766.1| ORF-96 [Agrotis segetum nucleopolyhedrovirus]
 gi|71559263|gb|AAZ38262.1| ORF-96 [Agrotis segetum nucleopolyhedrovirus]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 17/189 (8%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------GSNANNTRVVAI 101
           R R  +KL  I++K  I +     +DL   PG +++    +       G    N    + 
Sbjct: 45  RDRCFHKLKNIDDKFGICRDVGVFLDLCGGPGQFAKYIFSVNEDCVGYGVTLRNDCDYSF 104

Query: 102 DILDMEPILGVKFFKFDFLD----LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
              +   + G  F   D  D     +   F RQ      DLV++D A+   G        
Sbjct: 105 SHPNFRKMYGC-FDTGDIFDANVLFEVMYFCRQKC----DLVVADGAFDVRGCENDQETL 159

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAES 215
           ++SL        +E L +GG+ ++K F     + I  L     HF K    KP  SRA +
Sbjct: 160 SLSLLRKECSVIVETLRVGGNCVLKVFDTFNCSTISLLENFVSHFTKHYLYKPSHSRAAN 219

Query: 216 VEMFLLAKG 224
            E +L+ KG
Sbjct: 220 SEKYLVCKG 228


>gi|82595412|ref|XP_725839.1| cell division protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480991|gb|EAA17404.1| putative cell division protein [Plasmodium yoelii yoelii]
          Length = 443

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L IGG+F+ K F+G  T  ++  L K F+K+   KP +SR +S+E FL+   F 
Sbjct: 23  VLKIGGNFISKIFRGEYTGLLIFYLNKFFEKIYVCKPQSSRNKSLESFLVCLNFH 77


>gi|70937915|ref|XP_739701.1| ribosomal RNA methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56516893|emb|CAH75037.1| ribosomal RNA methyltransferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%)

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID      L  ++      +L +GG+F+ K F+G  T  ++  L K F+K+   KP
Sbjct: 5   GMNDIDEFIQSQLILSSLKVCCSVLKVGGNFISKIFRGEYTGLLIFHLNKFFEKIYVCKP 64

Query: 209 VASRAESVEMFLLAKGF 225
            +SR +S+E FL+   F
Sbjct: 65  QSSRNKSLESFLVCLNF 81


>gi|322501390|emb|CBZ36469.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 335

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 15/115 (13%)

Query: 47  WRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARITGSNANNTR------V 98
           +R +SA KLL+IN++++I    R   +VDL ++PG ++QVA  +     N  +      V
Sbjct: 2   YRCQSALKLLEINDRYRIFHRLRPSTVVDLAAAPGGFAQVALELMHLPENAPQSVLPPMV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
           VA+D   ++P+ G+   + + L     + I Q + G     LS M  PT    ++
Sbjct: 62  VAVDQRSIDPMPGLVAVRGNILQ---HQRILQTVQG----ALSLMRAPTTSPPRV 109


>gi|268575880|ref|XP_002642920.1| Hypothetical protein CBG15196 [Caenorhabditis briggsae]
          Length = 494

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ- 185
            I + + G  DLV +D +  T G           L  A    AL +L  GG  ++KT++ 
Sbjct: 198 LIEKGLKGTFDLVTADGSTNTQGKEGQIEEIVGPLIRAEVNAALLLLKPGGSLILKTYRF 257

Query: 186 -GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                 D++ LL  +F ++  VKP+ASR  S E +L+  GF
Sbjct: 258 CEKQIQDVMFLLADNFSEIRVVKPMASRPGSSERYLICNGF 298


>gi|146094605|ref|XP_001467328.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071693|emb|CAM70384.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 335

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 15/115 (13%)

Query: 47  WRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARITGSNANNTR------V 98
           +R +SA KLL+IN++++I    R   +VDL ++PG ++QVA  +     N  +      V
Sbjct: 2   YRCQSALKLLEINDRYRIFHRLRPSTVVDLAAAPGGFAQVALELMHLPENAPQSALPPMV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
           VA+D   ++P+ G+   + + L     + I Q + G     LS M  PT    ++
Sbjct: 62  VAVDQRSIDPMPGLVAVRGNILQ---HQRILQTVQG----ALSLMRAPTTSPPRV 109


>gi|325180302|emb|CCA14705.1| PREDICTED: FtsJ methyltransferase domain containing 2like putative
           [Albugo laibachii Nc14]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 36/222 (16%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-------QILQSNRRIV---DLGSSPGSWSQVA 85
           +PY + + +  ++ R+A KL +++ +        Q+L     ++   D+ + PG +++  
Sbjct: 139 NPYEKISNVHLFQNRAALKLAELDAQFSPKLSDPQLLPEENNVLFFADICAGPGGFTEYL 198

Query: 86  A-----RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ---------- 130
                 R  G       V   ++    P +    F+ D+  LD  +   Q          
Sbjct: 199 YWQRKWRCKGWGFTLKGVCDFELEKFNPCIAADTFEIDYGVLDDGDIYAQENILSFQKRV 258

Query: 131 ---AIGGNPDLVLSDMAYPTIG--HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--- 182
                G    LV +D  + T G  +R+    + + LCE  T  AL +L  GG F+ K   
Sbjct: 259 LASTKGRGVALVTADGGFSTDGDWNRQEFLTKRLVLCECIT--ALCVLRQGGTFVCKFFD 316

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           TFQ  T  +++ ++   F++V   KP+ SR  + E FL+ +G
Sbjct: 317 TFQDFTI-ELIYIMTLVFEEVSITKPIQSRPANSERFLVCRG 357


>gi|309358872|emb|CAP33554.2| hypothetical protein CBG_15196 [Caenorhabditis briggsae AF16]
          Length = 555

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ- 185
            I + + G  DLV +D +  T G           L  A    AL +L  GG  ++KT++ 
Sbjct: 198 LIEKGLKGTFDLVTADGSTNTQGKEGQIEEIVGPLIRAEVNAALLLLKPGGSLILKTYRF 257

Query: 186 -GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                 D++ LL  +F ++  VKP+ASR  S E +L+  GF
Sbjct: 258 CEKQIQDVMFLLADNFSEIRVVKPMASRPGSSERYLICNGF 298


>gi|145477769|ref|XP_001424907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391974|emb|CAK57509.1| unnamed protein product [Paramecium tetraurelia]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+++ D A    G   ID+     L  AA    L  L   G F+ K F+G     +    
Sbjct: 133 DIIVCDGAPDVTGFHDIDYYIQSQLIVAALNICLMTLRENGIFVAKIFKGSDIKLLYSQF 192

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLA 222
           K  F +V  +KP +SRA SVE F++ 
Sbjct: 193 KLFFNQVYFMKPKSSRASSVEYFIIC 218


>gi|67993605|ref|NP_001018225.1| SAM-dependent methyltransferase [Schizosaccharomyces pombe 972h-]
 gi|74622209|sp|Q8TFH4|YIKA_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase PB17E12.10c;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|19571753|emb|CAD27503.1| SAM-dependent methyltransferase [Schizosaccharomyces pombe]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           +IN++HQ+ +  + +VDLG +PG WS +AAR  G      RV+A DI+
Sbjct: 65  KINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVGLFG---RVIACDII 109


>gi|215401486|ref|YP_002332790.1| hypothetical protein SlnV2_gp092 [Spodoptera litura
           nucleopolyhedrovirus II]
 gi|209484027|gb|ACI47460.1| unknown [Spodoptera litura nucleopolyhedrovirus II]
          Length = 294

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 9/185 (4%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT------GSNANNTRVVAI 101
           R R   K+  I+EK Q+ ++    +DL   PG +++    +       G+   N    A 
Sbjct: 44  RNRCYLKMRDIDEKFQLCRNVDVFLDLCGGPGQFAKYIFDVNADCLGYGATLRNDCDYAF 103

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           D  +   + G  F   D  D +    +        DLV++D A+   G        + +L
Sbjct: 104 DHPNFRKMYGC-FDTGDIFDANVLFELMYFCKNKCDLVVADGAFDVRGDENNQETLSFNL 162

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMF 219
                   ++ L  GG+ ++K F     + I  L     HF +    KP  SRA + E +
Sbjct: 163 IRKECSIIVDALRAGGNCVLKIFDTFERSTISLLEDFVSHFTEHTVYKPPHSRAANSEKY 222

Query: 220 LLAKG 224
           L+ KG
Sbjct: 223 LVCKG 227


>gi|9634310|ref|NP_037849.1| ORF89 [Spodoptera exigua MNPV]
 gi|6960548|gb|AAF33618.1|AF169823_89 ORF89 [Spodoptera exigua MNPV]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 16/213 (7%)

Query: 27  RDWLNRH-INDPYVQRAQLE---GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           +D LN + + D    R  LE     R R  +K+  I++K Q+ ++    +DL   PG ++
Sbjct: 17  KDKLNEYDVRDIRRARQTLERGQHVRNRCYFKMRDIDDKFQLCRNVNVFLDLCGGPGQFA 76

Query: 83  Q---------VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           +         +   +T  + NN      D  +   + G  F   +  D +    +     
Sbjct: 77  KYIFDTNADCLGYGVTLRDNNNDCDYNFDHPNFRKMYGC-FDTGNIFDANVLFELMYFCR 135

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTND 191
              DLV++D A+   G+       + +L        ++ L  GG+ ++K F     +T  
Sbjct: 136 NKCDLVVADGAFDVSGNENDQESLSYNLIRKECSIIVDALRAGGNCVLKIFDTFERSTIS 195

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +L     HF +    KP  SRA + E +L+ KG
Sbjct: 196 LLQDFVSHFNEFAIYKPAHSRAANSEKYLVCKG 228


>gi|156402431|ref|XP_001639594.1| predicted protein [Nematostella vectensis]
 gi|156226723|gb|EDO47531.1| predicted protein [Nematostella vectensis]
          Length = 529

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
           D VL+D A P +G   + D      L  +A   A E L  GG F+ K F+      +L +
Sbjct: 30  DCVLNDGA-PNVGTAWVQDAFTQAELTLSALKLACENLKEGGWFITKVFRSKDYQPLLWV 88

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F+ V   KP ASR ES E+F++ +  
Sbjct: 89  FQQLFKSVHSTKPQASRNESAEIFVVCQSL 118


>gi|37651383|ref|NP_932674.1| putative methly transferase [Choristoneura fumiferana DEF MNPV]
 gi|37499292|gb|AAQ91691.1| putative methly transferase [Choristoneura fumiferana DEF MNPV]
          Length = 274

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS------QVAARITG----SNANNTR 97
           R R   KL +I+++ ++ Q     +DL   PG ++        + R+ G    +NA   R
Sbjct: 41  RPRCWRKLAEIDKQFKVCQGVNTALDLCGGPGEFAAYTMSCNASCRVYGVTLAANAPYKR 100

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
            V  +  +   ++G      D LD +    +    G   DLVL+D A    G        
Sbjct: 101 TVR-NQANFCAVMGPDATG-DVLDKNVLFDLSVKCGNACDLVLADGAVDVTGRENDQERL 158

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAES 215
              L    T  AL  L  GG+ ++K F      T ++L    +HF +   VKP +SR  +
Sbjct: 159 NAPLIMRETQLALICLRPGGNCIIKVFDAFDDETINMLANFVRHFARWRLVKPPSSRPSN 218

Query: 216 VEMFLLA 222
            E +L+ 
Sbjct: 219 SERYLVC 225


>gi|15320719|ref|NP_203231.1| hypothetical protein [Epiphyas postvittana NPV]
 gi|2708645|gb|AAB92561.1| ORF69 homolog [Epiphyas postvittana NPV]
 gi|15213187|gb|AAK85626.1| unknown [Epiphyas postvittana NPV]
          Length = 268

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 24/209 (11%)

Query: 34  INDPYVQRAQLEGW------RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            +D +++RA+   +      + R   KL +I++  ++ ++    +DL   PG +    A 
Sbjct: 16  FDDAHIKRARARLFDGALERKPRCWRKLAEIDKHFKVCRNVNTALDLCGGPGEF----AA 71

Query: 88  ITGSNANNTRVVAIDILDMEPILGV-----KFFKF-------DFLDLDSWEFIRQAIGGN 135
            T +     RV  + ++   P   V      F          D LD +    +  A G  
Sbjct: 72  YTMARNPLCRVFGVTLIANAPYKRVVQNHSNFVNVVGPDGTGDVLDKNVLFDLSVACGNA 131

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDIL 193
            DLVL+D A    G          +L    T  AL  L +GG+ ++K F      T D+L
Sbjct: 132 CDLVLADGAVDAAGRENEQETINRALILRETQLALICLRVGGNCVLKVFDAFHNETLDVL 191

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLA 222
               +HF +    KP +SR  + E +L+ 
Sbjct: 192 ERFARHFARWRLFKPPSSRPANSERYLVC 220


>gi|70929691|ref|XP_736867.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511773|emb|CAH84861.1| hypothetical protein PC301269.00.0 [Plasmodium chabaudi chabaudi]
          Length = 231

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              +L +GG+F+ K F+G  T  ++  L K F+K+   KP +SR +S+E FL+   F
Sbjct: 10  CCSVLKVGGNFISKIFRGEYTGLLIFHLNKFFEKIYVCKPQSSRNKSLESFLVCLNF 66


>gi|157873068|ref|XP_001685050.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|13751837|emb|CAC37239.1| FtsJ-like methyltransferase [Leishmania major]
 gi|68128121|emb|CAJ08252.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 335

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 104/257 (40%), Gaps = 85/257 (33%)

Query: 47  WRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARITGSNANNTR------V 98
           +R +SA KL++IN++++I    R   +VDL ++PG ++QVA  +     N  +      V
Sbjct: 2   YRCQSALKLVEINDRYRIFHRFRPSTVVDLAAAPGGFAQVALELMHLPENAPQSALPPMV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----------NPDLVLSDMAYPTI 148
           VA+D   ++P+ G+   + + L     + I QA+ G          +P  VLS  A    
Sbjct: 62  VAVDQRPIDPMPGLVAVRGNILQ---HQRILQAVQGALSLTRAPTTSPPRVLSS-ARTAP 117

Query: 149 GHRKIDHL-----------RTMSLCEAATFFALEMLNIGGDFLVKTFQ-GGTTNDI---- 192
             R +D +           R  S+  A    AL  L +      K FQ  G   D+    
Sbjct: 118 QTRCVDMVLHDGVSVVKGQRAFSVTYAQNQMALSTLLLAS----KLFQRHGLMPDLPTDA 173

Query: 193 ---------------------------LCLLKK-----HFQKVI--------HV---KPV 209
                                      +C + K     HF +V+        HV   KPV
Sbjct: 174 APHRSNKPEGRISRSTSVPRSSSAVLPVCFVSKVLQCDHFAQVLAATQALFCHVRPFKPV 233

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR ES+E +++A  F+
Sbjct: 234 ASRPESLERYVVATDFQ 250


>gi|316977931|gb|EFV60968.1| putative ribosomal RNA large subunit methyltransferase J
           [Trichinella spiralis]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
           L ++D  +  +G   +  + +  +    +   L +L  GG FL K F   T  T D++CL
Sbjct: 343 LFMADGGFSVVGEEILQEVLSKRIYLCQSLCGLLVLRKGGTFLCKFFDTFTPFTVDLICL 402

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F K+   KP +SR  + E +++  GFR
Sbjct: 403 LWHCFDKLTLHKPHSSRPGNSEKYVIGIGFR 433


>gi|209401119|ref|YP_002273988.1| putative methyl transferase [Helicoverpa armigera NPV NNg1]
 gi|209364371|dbj|BAG74630.1| putative methyl transferase [Helicoverpa armigera NPV NNg1]
          Length = 274

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R  +K+ +I+E+  + ++ R  VDL   PG ++   +  +  N+    V   + LD    
Sbjct: 46  RCWHKMKEIDERFNLCRNVRLYVDLCGGPGQFANYISNNSTLNSQGYGVTLRNHLDYNVF 105

Query: 110 LGVKFFKFDFLDLDSWEFIRQAI--------GGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
             V  F   + D ++ +   + I        G   DLV++D      G      L  + L
Sbjct: 106 --VPNFCAVYGDANTGDIFEEDIQNKLNMLCGHRCDLVVADGGIDVYGKENDQELIMLPL 163

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMF 219
                   L+ L +GG+ ++K F     N  + L     +F +    KPV+SR  + E +
Sbjct: 164 IAKQCEIILDCLRVGGNSVLKIFDTFARNTFVVLESFISNFSEFYVFKPVSSRPANAERY 223

Query: 220 LLA 222
           L+ 
Sbjct: 224 LVC 226


>gi|18138392|ref|NP_542688.1| ORF65 [Helicoverpa zea SNPV]
 gi|18028774|gb|AAL56210.1|AF334030_135 ORF65 [Helicoverpa zea SNPV]
          Length = 274

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R  +K+ +I+E+  + ++ R  VDL   PG ++   +  +  N+    V   + LD    
Sbjct: 46  RCWHKMKEIDERFNLCRNVRLYVDLCGGPGQFANYISNNSTLNSQGYGVTLRNHLDYNVF 105

Query: 110 LGVKFFKFDFLDLDSWEFIRQAI--------GGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
             V  F   + D ++ +   + I        G   DLV++D      G      L  + L
Sbjct: 106 --VPNFCAVYGDANTGDIFEEDIQNKLNMLCGHRCDLVVADGGIDVYGKENDQELIMLPL 163

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMF 219
                   L+ L +GG+ ++K F     N  + L     +F +    KPV+SR  + E +
Sbjct: 164 IAKQCEIILDCLRVGGNSVLKIFDTFARNTFVVLESFISNFSEFYVFKPVSSRPANAERY 223

Query: 220 LLA 222
           L+ 
Sbjct: 224 LVC 226


>gi|66815279|ref|XP_641656.1| D111/G-patch domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|74856229|sp|Q54WR1|MTR1_DICDI RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|60469747|gb|EAL67735.1| D111/G-patch domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 757

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 138 LVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDIL 193
           L L+D    T G   +  L  + + LC+  T F  E +  GG+F+ K F   T  T  +L
Sbjct: 348 LFLADGGINTDGKESLQELMLQQLILCQILTMF--ETIGRGGNFVCKIFDTFTPFTIGLL 405

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+ +HFQ    VKP  SR  + E +++ K F
Sbjct: 406 YLVYQHFQSFSIVKPFTSRPLNSERYIICKNF 437


>gi|322493833|emb|CBZ29122.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 335

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 47  WRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARITGSNANNTR------V 98
           +R +SA KL++IN++++I    R   +VDL ++PG ++QVA  +     N  +      V
Sbjct: 2   YRCQSALKLVEINDRYRIFHRFRPSTVVDLAAAPGGFAQVALELMHLPENAPKSALSPMV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLD 121
           VA+D   ++P+ G+   + + L 
Sbjct: 62  VAVDQRPIDPMPGLVVVRGNILQ 84


>gi|316964771|gb|EFV49726.1| putative ribosomal RNA large subunit methyltransferase J
           [Trichinella spiralis]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
           L ++D  +  +G   +  + +  +    +   L +L  GG FL K F   T  T D++CL
Sbjct: 298 LFMADGGFSVVGEEILQEVLSKRIYLCQSLCGLLVLRKGGTFLCKFFDTFTPFTVDLICL 357

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F K+   KP +SR  + E +++  GFR
Sbjct: 358 LWHCFDKLTLHKPHSSRPGNSEKYVIGIGFR 388


>gi|307212767|gb|EFN88438.1| Uncharacterized protein FLJ11171 [Harpegnathos saltator]
          Length = 488

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESV 216
           +  CE  T   + +L  GG+FL+K F       +  + LL   FQKVI  KP  SRA + 
Sbjct: 251 LHFCEIVT--CMHLLEKGGNFLLKVFTLFEHQSVCLMYLLACAFQKVIATKPATSRAGNS 308

Query: 217 EMFLLAKGF 225
           EM+++   F
Sbjct: 309 EMYIVCTNF 317


>gi|290996676|ref|XP_002680908.1| predicted protein [Naegleria gruberi]
 gi|284094530|gb|EFC48164.1| predicted protein [Naegleria gruberi]
          Length = 575

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
           LV +D  +   G        T  L        L +   GG F+ K F   T  +  ++ +
Sbjct: 355 LVTADGGFSVHGVENSQEYLTHQLVLCQILTGLMITRRGGSFVCKLFDLNTWFSASLMYI 414

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L ++++KV+ VKP++SR  + E +++ KG RK
Sbjct: 415 LYQNYEKVMIVKPLSSRPANSERYVICKGLRK 446


>gi|224373114|ref|YP_002607486.1| hemolysin A [Nautilia profundicola AmH]
 gi|223589777|gb|ACM93513.1| hemolysin A [Nautilia profundicola AmH]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           V+  Q +G+ +R+AYKL    +KH I   N+ ++D+GSS G ++QVA           +V
Sbjct: 48  VEVLQNDGYVSRAAYKLKNYLQKHGINFENKTVLDIGSSTGGFTQVALE-----EGAQKV 102

Query: 99  VAIDI 103
           V++D+
Sbjct: 103 VSVDV 107


>gi|12597548|ref|NP_075132.1| hypothetical protein HanGV4gp063 [Helicoverpa armigera
           nucleopolyhedrovirus G4]
 gi|15426323|ref|NP_203618.1| hypothetical protein [Helicoverpa armigera NPV]
 gi|12483814|gb|AAG53806.1|AF271059_63 unknown [Helicoverpa armigera nucleopolyhedrovirus G4]
 gi|15384399|gb|AAK96310.1|AF303045_52 unknown [Helicoverpa armigera NPV]
          Length = 274

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R  +K+ +++E+  + ++ R  VDL   PG ++   +  +  N+    V   + LD    
Sbjct: 46  RCWHKMKELDERFNLCRNVRLYVDLCGGPGQFANYISNNSTLNSQGYGVTLRNHLDYNVF 105

Query: 110 LGVKFFKFDFLDLDSWEFIRQAI--------GGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
             V  F   + D ++ +   + I        G   DLV++D      G      L  + L
Sbjct: 106 --VPNFCAVYGDANTGDIFEEDIQNKLNMLCGHRCDLVVADGGIDVYGKENDQELIMLPL 163

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMF 219
                   L+ L +GG+ ++K F     N  + L     +F +    KPV+SR  + E +
Sbjct: 164 IAKQCEIILDCLRVGGNSVLKIFDTFARNTFVVLESFISNFSEFYVFKPVSSRPANAERY 223

Query: 220 LLA 222
           L+ 
Sbjct: 224 LVC 226


>gi|281210651|gb|EFA84817.1| D111/G-patch domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 763

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           LC+  T F  E+L++GG+F+ K F   T  T  +L ++ KHF+    VKP  SR  + E 
Sbjct: 485 LCQFLTMF--EILSLGGNFVCKIFDTFTPFTVGLLYIIFKHFESFTIVKPFTSRPLNSER 542

Query: 219 FLLAKGF 225
           +++AK  
Sbjct: 543 YVIAKNL 549


>gi|258568504|ref|XP_002584996.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237906442|gb|EEP80843.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           G +PGSWSQVA  +T  N    RV+ IDI+  +P  GV   + +FL      ++R+
Sbjct: 6   GFAPGSWSQVAVELTHPNG---RVLGIDIIPAQPPKGVSTIQGNFLSPRVQAYVRE 58


>gi|157114165|ref|XP_001652191.1| hypothetical protein AaeL_AAEL006747 [Aedes aegypti]
 gi|108877425|gb|EAT41650.1| conserved hypothetical protein [Aedes aegypti]
          Length = 703

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
           +H+  + L EA T  AL++L   G F++K  TF   ++ D+L LL   F+++   KP  S
Sbjct: 261 EHVSKLHLAEAVT--ALKILTTDGCFILKMFTFFEHSSVDLLYLLYVCFRELHVFKPATS 318

Query: 212 RAESVEMFLLAKGFRK 227
           +  + E++++AK FRK
Sbjct: 319 KPGNSEVYVIAKYFRK 334


>gi|260830142|ref|XP_002610020.1| hypothetical protein BRAFLDRAFT_237949 [Branchiostoma floridae]
 gi|229295383|gb|EEN66030.1| hypothetical protein BRAFLDRAFT_237949 [Branchiostoma floridae]
          Length = 584

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
           M+P     F KF    LDS E      G     V++D  +   G   +  + +  L    
Sbjct: 263 MKPANLTTFKKFV---LDSTE------GKGVHFVMADGGFSVEGQENLQEVLSKQLVLCE 313

Query: 166 TFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              AL +L IGG F+ KTF   T  +  ++ LL   F +V   KP+ SR  + E +++ K
Sbjct: 314 FLCALSILRIGGCFVCKTFDLFTPFSVGLVYLLYHCFHQVCIFKPITSRPANSERYVVCK 373

Query: 224 GFR 226
           G +
Sbjct: 374 GLK 376


>gi|221481727|gb|EEE20103.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 13/67 (19%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
          L++   D Y +RA+ EG+RARSAYKLLQ++++   L           SP S S+   R  
Sbjct: 4  LSKDRRDIYYRRAKEEGYRARSAYKLLQLDDELHFL-----------SPPSLSR--RRRE 50

Query: 90 GSNANNT 96
          G NAN T
Sbjct: 51 GRNANGT 57


>gi|194383894|dbj|BAG59305.1| unnamed protein product [Homo sapiens]
          Length = 726

 Score = 42.7 bits (99), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG F+ K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 30  GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRRESAEIFVVCQGF 79


>gi|332848817|ref|XP_003315726.1| PREDICTED: putative rRNA methyltransferase 3 isoform 2 [Pan
           troglodytes]
          Length = 726

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG F+ K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 30  GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGF 79


>gi|195133504|ref|XP_002011179.1| GI16152 [Drosophila mojavensis]
 gi|193907154|gb|EDW06021.1| GI16152 [Drosophila mojavensis]
          Length = 1022

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKT 183
           ++IR+         ++D  +   G   I  +  + + LC+  T  AL++L +GG F+ K 
Sbjct: 487 DYIRKHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFNT--ALKILRVGGSFVCKL 544

Query: 184 FQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           F   T  +  ++ L+ K FQ++  +KP +SR  + E +++ K
Sbjct: 545 FDLFTPFSVSLVYLMYKCFQQIAILKPNSSRPANSERYIICK 586


>gi|45478098|gb|AAS66220.1| LRRG00129 [Rattus norvegicus]
          Length = 1035

 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T   +  + L
Sbjct: 472 FVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 531

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KPV SR  + E +++ KG +
Sbjct: 532 LYCCFERVCLFKPVTSRPANSERYVVCKGLK 562


>gi|62078793|ref|NP_001014053.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Rattus
           norvegicus]
 gi|81883532|sp|Q5U2Z5|MTR1_RAT RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|55249721|gb|AAH85799.1| FtsJ methyltransferase domain containing 2 [Rattus norvegicus]
 gi|149043523|gb|EDL96974.1| similar to RIKEN cDNA 1300018I05, isoform CRA_a [Rattus norvegicus]
 gi|149043524|gb|EDL96975.1| similar to RIKEN cDNA 1300018I05, isoform CRA_a [Rattus norvegicus]
          Length = 837

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T   +  + L
Sbjct: 359 FVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 418

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KPV SR  + E +++ KG +
Sbjct: 419 LYCCFERVCLFKPVTSRPANSERYVVCKGLK 449


>gi|308499046|ref|XP_003111709.1| hypothetical protein CRE_02812 [Caenorhabditis remanei]
 gi|308239618|gb|EFO83570.1| hypothetical protein CRE_02812 [Caenorhabditis remanei]
          Length = 663

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ- 185
            I+  + G+ DLV +D +  T G          SL  A    AL +L   G  ++K ++ 
Sbjct: 208 LIKNELAGSFDLVTADGSTDTQGQEGQIEEVVASLIRAEVEAALILLRKNGRLILKVYRF 267

Query: 186 -GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               T D++ LL  +F  +   KP ASR  S E +++ +GF
Sbjct: 268 CALDTQDVMMLLADNFGSIRVFKPKASRPGSSEKYVICEGF 308


>gi|312370994|gb|EFR19278.1| hypothetical protein AND_22770 [Anopheles darlingi]
          Length = 742

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 164 AATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           A T  AL +L IGG F++K F     ++ ++L LL   F+++   KP  S+  + E++L+
Sbjct: 279 AETIIALSVLGIGGHFVLKMFTLFEHSSVNLLFLLHHCFEELHVFKPCTSKPGNSEVYLI 338

Query: 222 AKGFRK 227
           AK +R+
Sbjct: 339 AKRYRR 344


>gi|322505403|emb|CBZ14784.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 15/109 (13%)

Query: 47  WRARSAYKLLQINEKHQILQS--NRRIVDLGSSPGSWSQVAARI------TGSNANNTRV 98
           +R +SA+KLL++N++++I        +VDL ++PG ++Q A  +         ++    V
Sbjct: 2   YRCQSAWKLLELNDRYRIFHQFHPSTVVDLAAAPGGFAQAALELMHIQETARPSSLPPMV 61

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
           +A+D   ++P+ G+   + + L     + I QA+ G    V S M  PT
Sbjct: 62  IAVDQRPIDPMPGLLAVRGNILQ---HQRILQAVQG----VFSHMRAPT 103


>gi|195397365|ref|XP_002057299.1| GJ16429 [Drosophila virilis]
 gi|194147066|gb|EDW62785.1| GJ16429 [Drosophila virilis]
          Length = 794

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  ++IR+         ++D  +   G   I  +  + + LC+  T  AL++L
Sbjct: 274 FDQSNQDSLNDYIRKHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFVT--ALKIL 331

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            I G F+ K F   T  +  ++ L+ K FQ++  +KP +SR  + E +++ K
Sbjct: 332 RINGSFVCKLFDLFTPFSVSLVYLMYKCFQQIAIIKPNSSRPANSERYIVCK 383


>gi|296235394|ref|XP_002762910.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like
           [Callithrix jacchus]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 36/77 (46%)

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP
Sbjct: 14  GLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKP 73

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F + +G+
Sbjct: 74  RSSRNSSIEAFAVCQGY 90


>gi|30387297|ref|NP_848376.1| hypothetical protein CfMNPVgpORF65 [Choristoneura fumiferana MNPV]
 gi|30270031|gb|AAP29847.1| unknown [Choristoneura fumiferana MNPV]
          Length = 266

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 14/189 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGS------WSQVAARITG----SNANNTR 97
           R R   KL +I+++  + +     +DL   PG       W     R+ G     NA   R
Sbjct: 36  RPRCWRKLAEIDKRFNVCRGVNTALDLCGGPGEFAAYTLWRSPLCRVFGVTLTRNAPYKR 95

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
            V     +   +LG      D LD +    +    G   +LVL+D A  + G        
Sbjct: 96  AVYAHS-NFTAVLGPDGTG-DVLDKNVLFDLSVTCGNACELVLADGAVDSTGREDEQERL 153

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAES 215
              L    T  AL  L  GG+ ++K F    G T   L    +HF     +KP +SR  +
Sbjct: 154 NAPLILRETQLALICLRPGGNCVLKVFDAFYGETLRTLQQFARHFASWRLMKPPSSRPSN 213

Query: 216 VEMFLLAKG 224
            E +L+  G
Sbjct: 214 SERYLVCLG 222


>gi|74191719|dbj|BAE32821.1| unnamed protein product [Mus musculus]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 359 FVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 418

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 419 LYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|21311939|ref|NP_083067.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Mus
           musculus]
 gi|81906080|sp|Q9DBC3|MTR1_MOUSE RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|12836695|dbj|BAB23771.1| unnamed protein product [Mus musculus]
 gi|19354353|gb|AAH24691.1| RIKEN cDNA 1300018I05 gene [Mus musculus]
 gi|26334891|dbj|BAC31146.1| unnamed protein product [Mus musculus]
 gi|26335867|dbj|BAC31634.1| unnamed protein product [Mus musculus]
 gi|26348519|dbj|BAC37899.1| unnamed protein product [Mus musculus]
 gi|74139681|dbj|BAE31692.1| unnamed protein product [Mus musculus]
 gi|74185441|dbj|BAE30191.1| unnamed protein product [Mus musculus]
 gi|74219494|dbj|BAE29520.1| unnamed protein product [Mus musculus]
 gi|74220584|dbj|BAE31504.1| unnamed protein product [Mus musculus]
 gi|74225491|dbj|BAE31655.1| unnamed protein product [Mus musculus]
 gi|148690680|gb|EDL22627.1| RIKEN cDNA 1300018I05, isoform CRA_a [Mus musculus]
 gi|148690681|gb|EDL22628.1| RIKEN cDNA 1300018I05, isoform CRA_a [Mus musculus]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T   +  + L
Sbjct: 359 FVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 418

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 419 LYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|50510351|dbj|BAD32161.1| mKIAA0082 protein [Mus musculus]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 245 FVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 304

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 305 LYCCFERVCLFKPITSRPANSERYVVCKGLK 335


>gi|26339874|dbj|BAC33600.1| unnamed protein product [Mus musculus]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T   +  + L
Sbjct: 359 FVMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 418

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 419 LYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|74214476|dbj|BAE31091.1| unnamed protein product [Mus musculus]
 gi|74214791|dbj|BAE31230.1| unnamed protein product [Mus musculus]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            V++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 359 FVMADGGFSVEGQENLQEIFSKQLLLCQFLMALSVVRTGGHFVCKTFDLFTPFSVGLIYL 418

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 419 LYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|113195465|ref|YP_717602.1| Se89-like protein [Clanis bilineata nucleopolyhedrosis virus]
 gi|94959006|gb|ABF47406.1| Se89-like protein [Clanis bilineata nucleopolyhedrosis virus]
          Length = 280

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV------AARITGSNANNTRVVAI 101
           R R  +KL +I+++  + Q+    +DL   PG +++         +  G+   N+     
Sbjct: 48  RNRCYHKLREIDQQFNVCQNVNLFLDLCGGPGQFAKYVIDNNPGCKGFGTTLRNSCDYQY 107

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
              D + I G       F +   +E I    GG  DLV++D A    G         + L
Sbjct: 108 KHEDFKKIYGKHNSGNIFEESLRYE-INMWCGGLCDLVMADGAVDVSGRENEQEQIMLPL 166

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---KHFQKVIHVKPVASRAESVEM 218
            +      LE +  GG  ++K F      D + LL+    HF +    KP +SRA + E 
Sbjct: 167 LKREIEICLENVRPGGACVLKIFD-TYQEDTVALLEYFVSHFSEHTVFKPKSSRAANSEK 225

Query: 219 FLLAK 223
           +L+ +
Sbjct: 226 YLVCQ 230


>gi|326433933|gb|EGD79503.1| hypothetical protein PTSG_12990 [Salpingoeca sp. ATCC 50818]
          Length = 2112

 Score = 41.6 bits (96), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESV 216
           +  CEA     L  L+ GG  ++K F     +T  ++ L+  HF +    KP  S+A + 
Sbjct: 460 LHFCEAVA--GLGCLSPGGAIVLKLFTACERSTAALIYLVGCHFDETYICKPATSKAANS 517

Query: 217 EMFLLAKGFR 226
           E +L+AKGFR
Sbjct: 518 ETYLVAKGFR 527


>gi|24639619|ref|NP_572148.2| CG6379 [Drosophila melanogaster]
 gi|74872724|sp|Q9W4N2|MTR1_DROME RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|7290461|gb|AAF45915.1| CG6379 [Drosophila melanogaster]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E+IR          ++D  +   G + I  +  + + LC+  T  AL++L
Sbjct: 272 FDESNQDSLNEYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G F+ K F   T   +  + L+ K FQ++  +KP +SR  + E +L+ K
Sbjct: 330 RPNGSFVCKVFDLFTPFSVGLVYLMYKCFQQIAIIKPNSSRPANSERYLVCK 381


>gi|17946316|gb|AAL49198.1| RE63452p [Drosophila melanogaster]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E+IR          ++D  +   G + I  +  + + LC+  T  AL++L
Sbjct: 272 FDESNQDSLNEYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G F+ K F   T   +  + L+ K FQ++  +KP +SR  + E +L+ K
Sbjct: 330 RPNGSFVCKVFDLFTPFSVGLVYLMYKCFQQIAIIKPNSSRPANSERYLVCK 381


>gi|297273385|ref|XP_002800609.1| PREDICTED: putative rRNA methyltransferase 3-like [Macaca mulatta]
          Length = 722

 Score = 41.6 bits (96), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             GG F+ K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 28  QCGGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGF 79


>gi|311259633|ref|XP_003128198.1| PREDICTED: hypothetical protein LOC100156357 [Sus scrofa]
          Length = 911

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T   +  + L
Sbjct: 103 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFICKTFDLFTPFSVGLIYL 162

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 163 LYCCFERVCLFKPITSRPANSERYVVCKGLK 193


>gi|301779423|ref|XP_002925128.1| PREDICTED: s-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2-like [Ailuropoda melanoleuca]
 gi|308197108|sp|D2HRF1|MTR1_AILME RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|281344017|gb|EFB19601.1| hypothetical protein PANDA_014567 [Ailuropoda melanoleuca]
          Length = 835

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFICKTFDLFTPFSAGLIYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|221114237|ref|XP_002154859.1| PREDICTED: similar to FtsJ methyltransferase domain containing 2
           [Hydra magnipapillata]
          Length = 775

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            V++D  +   G   I  + +  L       AL +L  GG F+ K F   T   I  + L
Sbjct: 301 FVMADGGFSVEGQENIQEILSKQLYLCQFLCALSVLRKGGHFICKVFDLFTPFSIGLVYL 360

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + + F ++   KPV SR  + E +L+ K  R+
Sbjct: 361 MYRAFDQICIFKPVTSRPANSERYLICKDLRE 392


>gi|224047575|ref|XP_002187143.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 138 LVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--L 193
            +++D  +   G   +  +  + + LC+  T  AL ++  GG+F+ KTF   T   +  +
Sbjct: 353 FLMADGGFSVEGQENLQEILSKQLMLCQFLT--ALSIVRTGGNFVCKTFDLFTPFSVGLV 410

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            LL   F++V   KPV SR  + E +++ KG +
Sbjct: 411 YLLYCCFERVCIFKPVTSRPANSERYVVCKGLK 443


>gi|116326137|ref|YP_803463.1| putative methyltransferase [Anticarsia gemmatalis
           nucleopolyhedrovirus]
 gi|112180875|gb|ABI13852.1| putative methyltransferase [Anticarsia gemmatalis
           nucleopolyhedrovirus]
          Length = 274

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS------QVAARITG----SNANNTR 97
           R R   KL +I+++ ++ Q+    +DL   PG ++        + R+ G    +NA   R
Sbjct: 41  RPRCWRKLAEIDKQFKVCQNVNTALDLCGGPGEFADYIMSCNASCRLYGVTLATNAPYKR 100

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
            V  +  +   ++G      D LD +    +    G   DLVL+D A    G        
Sbjct: 101 RVR-NQTNFCAVIGPDATG-DVLDKNVLFDLSVKCGNACDLVLADGAVDVTGRENDQERL 158

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAES 215
              L    T  AL  L  GG+ ++K F      T ++L     HF +   VKP +SR  +
Sbjct: 159 NAPLIMRETQLALICLRPGGNCVIKVFDAFDDETLNMLANFVCHFARWRLVKPPSSRPSN 218

Query: 216 VEMFLLA 222
            E +L+ 
Sbjct: 219 SERYLVC 225


>gi|269792512|ref|YP_003317416.1| hemolysin A [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100147|gb|ACZ19134.1| hemolysin A [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           VQR   E W +R AYKLL+  E  Q+    R  VD+G+S G ++QV  R   S     RV
Sbjct: 51  VQRGTEERWVSRGAYKLLRALEVFQLDPFGRICVDVGASTGGFTQVLLRRGAS-----RV 105

Query: 99  VAIDI 103
            ++D+
Sbjct: 106 YSVDV 110


>gi|194223469|ref|XP_001917983.1| PREDICTED: similar to KIAA0082 [Equus caballus]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLIYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|302841276|ref|XP_002952183.1| hypothetical protein VOLCADRAFT_62343 [Volvox carteri f.
           nagariensis]
 gi|300262448|gb|EFJ46654.1| hypothetical protein VOLCADRAFT_62343 [Volvox carteri f.
           nagariensis]
          Length = 273

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           R    G   +V +D A  T        + T SL       AL +L +GG+F+ K F    
Sbjct: 152 RMGCPGGVLMVTADGAVDTSMDPNRQEMITASLHYCEVVAALGLLAVGGNFVWKGFTLYE 211

Query: 189 TNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              I  L L+   F KV+  KP  S+  + E++++ KGFR
Sbjct: 212 HPSICSLFLMGCLFDKVLVYKPATSKPANSEVYVVGKGFR 251


>gi|118088049|ref|XP_419486.2| PREDICTED: similar to KIAA0082 [Gallus gallus]
          Length = 897

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 465 FLMADGGFSVEGQENLQEILSKQLMLCQFLMALSIVRTGGHFVCKTFDLFTPFSVGLVYL 524

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KPV SR  + E +++ KG +
Sbjct: 525 LYCCFERVCIFKPVTSRPANSERYVVCKGLK 555


>gi|126723764|ref|NP_001075899.1| FtsJ methyltransferase domain containing 2 [Bos taurus]
 gi|308197109|sp|A2VE39|MTR1_BOVIN RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|126010617|gb|AAI33560.1| FTSJD2 protein [Bos taurus]
 gi|296474506|gb|DAA16621.1| FtsJ methyltransferase domain containing 2 [Bos taurus]
          Length = 835

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFICKTFDLFTPFSVGLIYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|13365825|dbj|BAB39298.1| hypothetical protein [Macaca fascicularis]
          Length = 750

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 275 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 334

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 335 LYCCFERVCLFKPITSRPANSERYVVCKGLK 365


>gi|311260344|ref|XP_001924245.2| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
           [Sus scrofa]
          Length = 835

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFICKTFDLFTPFSVGLIYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|58257642|dbj|BAA07893.2| KIAA0082 [Homo sapiens]
          Length = 882

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 407 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 466

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 467 LYCCFERVCLFKPITSRPANSERYVVCKGLK 497


>gi|332255681|ref|XP_003276961.1| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
           [Nomascus leucogenys]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|194887980|ref|XP_001976842.1| GG18562 [Drosophila erecta]
 gi|190648491|gb|EDV45769.1| GG18562 [Drosophila erecta]
          Length = 788

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E+IR          ++D  +   G   I  +  + + LC+  T  AL++L
Sbjct: 272 FDESNQDSLNEYIRMHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G F+ K F   T   +  + L+ K FQ++  +KP +SR  + E +L+ K
Sbjct: 330 RPNGSFVCKVFDLFTPFSVGLVYLMYKCFQQIAIIKPNSSRPANSERYLVCK 381


>gi|24307983|ref|NP_055865.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Homo
           sapiens]
 gi|197102002|ref|NP_001125983.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Pongo
           abelii]
 gi|332823946|ref|XP_527377.3| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
           [Pan troglodytes]
 gi|74750894|sp|Q8N1G2|MTR1_HUMAN RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           Short=hMTr1; AltName: Full=FtsJ methyltransferase
           domain-containing protein 2; AltName:
           Full=Interferon-stimulated gene 95 kDa protein;
           Short=ISG95
 gi|75041693|sp|Q5R981|MTR1_PONAB RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|21619429|gb|AAH31890.1| FtsJ methyltransferase domain containing 2 [Homo sapiens]
 gi|55729904|emb|CAH91679.1| hypothetical protein [Pongo abelii]
 gi|56206050|emb|CAI19603.1| FtsJ methyltransferase domain containing 2 [Homo sapiens]
 gi|119624351|gb|EAX03946.1| KIAA0082 [Homo sapiens]
 gi|168278501|dbj|BAG11130.1| KIAA0082 protein [synthetic construct]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|326915346|ref|XP_003203980.1| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
           1-like [Meleagris gallopavo]
          Length = 831

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T   +  + L
Sbjct: 356 FLMADGGFSVEGQENLQEILSKQLMLCQFLMALSIVRTGGHFVCKTFDLFTPFSVGLVYL 415

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KPV SR  + E +++ KG +
Sbjct: 416 LYCCFERVCIFKPVTSRPANSERYVVCKGLK 446


>gi|159151710|gb|ABW92363.1| CG6379-PA [Drosophila melanogaster]
 gi|159151712|gb|ABW92364.1| CG6379-PA [Drosophila melanogaster]
 gi|159151714|gb|ABW92365.1| CG6379-PA [Drosophila melanogaster]
 gi|159151716|gb|ABW92366.1| CG6379-PA [Drosophila melanogaster]
 gi|159151718|gb|ABW92367.1| CG6379-PA [Drosophila melanogaster]
 gi|159151720|gb|ABW92368.1| CG6379-PA [Drosophila melanogaster]
 gi|159151722|gb|ABW92369.1| CG6379-PA [Drosophila melanogaster]
 gi|159151724|gb|ABW92370.1| CG6379-PA [Drosophila melanogaster]
 gi|159151726|gb|ABW92371.1| CG6379-PA [Drosophila melanogaster]
 gi|159151728|gb|ABW92372.1| CG6379-PA [Drosophila melanogaster]
 gi|159151730|gb|ABW92373.1| CG6379-PA [Drosophila melanogaster]
 gi|159151732|gb|ABW92374.1| CG6379-PA [Drosophila melanogaster]
          Length = 236

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKT 183
           E+IR          ++D  +   G + I  +  + + LC+  T  AL++L   G F+ K 
Sbjct: 4   EYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLT--ALKILRPNGSFVCKV 61

Query: 184 FQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           F   T  +  ++ L+ K FQ++  +KP +SR  + E +L+ K
Sbjct: 62  FDLFTPFSVGLVYLMYKCFQQIAIIKPNSSRPANSERYLVCK 103


>gi|158258565|dbj|BAF85253.1| unnamed protein product [Homo sapiens]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|296198064|ref|XP_002746545.1| PREDICTED: S-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2 [Callithrix jacchus]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|109070997|ref|XP_001117026.1| PREDICTED: s-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2-like isoform 1 [Macaca mulatta]
 gi|297290745|ref|XP_002803764.1| PREDICTED: s-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2-like [Macaca mulatta]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 420 LYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|73972755|ref|XP_538896.2| PREDICTED: similar to CG6379-PA isoform 1 [Canis familiaris]
          Length = 1090

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG F+ KTF   T  +  ++ L
Sbjct: 798 FLMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFICKTFDLFTPFSVGLIYL 857

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP+ SR  + E +++ KG +
Sbjct: 858 LYCCFERVCLFKPITSRPANSERYVVCKGLK 888


>gi|125982897|ref|XP_001355214.1| GA19551 [Drosophila pseudoobscura pseudoobscura]
 gi|54643527|gb|EAL32271.1| GA19551 [Drosophila pseudoobscura pseudoobscura]
          Length = 785

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E+IR+         ++D  +   G   I  +  + + LC+  T  AL++L
Sbjct: 272 FDDQNQDSLNEYIRRHTPDGVHFAMADGGFSVEGEENIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G+F+ K F   T   +  + L+ K F ++  +KP +SR  + E +L+ K
Sbjct: 330 RKNGNFVCKVFDLFTPFSVGLIYLMYKCFHQIAIIKPNSSRPANSERYLVCK 381


>gi|85000303|ref|XP_954870.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303016|emb|CAI75394.1| hypothetical protein, conserved [Theileria annulata]
          Length = 1007

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKI--DHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           E +   +  N D +  D+ Y  + +R++    L T  +  A    AL  LN  GD +++ 
Sbjct: 757 EILESNLKRNCDFIFCDL-YNNVNYRELLYKELNTKYILVAQLIQALNCLNDNGDLVLRI 815

Query: 184 FQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           F   T  T  ILC L   F +VI  +P +    S E+F++ K ++
Sbjct: 816 FSMFTRFTVGILCCLSTVFDQVILYRPESVVNWSQELFVICKNYK 860


>gi|195425949|ref|XP_002061219.1| GK10359 [Drosophila willistoni]
 gi|194157304|gb|EDW72205.1| GK10359 [Drosophila willistoni]
          Length = 789

 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKT 183
           E+IR+         ++D  +   G   I  +  + + LC+  T  AL++L   G+F+ K 
Sbjct: 282 EYIRKHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLT--ALKILRENGNFVCKV 339

Query: 184 FQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           F   T  +  ++ L+ K F ++  +KP +SR  + E +L+ K  R
Sbjct: 340 FDLFTPFSVGLVYLMYKSFYQIAIIKPNSSRPANSERYLVCKNKR 384


>gi|195163974|ref|XP_002022824.1| GL14540 [Drosophila persimilis]
 gi|194104847|gb|EDW26890.1| GL14540 [Drosophila persimilis]
          Length = 589

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E+IR+         ++D  +   G   I  +  + + LC+  T  AL++L
Sbjct: 272 FDDQNQDSLNEYIRRHTPDGVHFAMADGGFSVEGEENIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G+F+ K F   T  +  ++ L+ K F ++  +KP +SR  + E +L+ K
Sbjct: 330 RKNGNFVCKVFDLFTPFSVGLIYLMYKCFHQIAIIKPNSSRPANSERYLVCK 381


>gi|323509295|dbj|BAJ77540.1| cgd7_2570 [Cryptosporidium parvum]
          Length = 516

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAES 215
           T S+    T  AL +L   G F++K F     TT  I+ LL   FQ V  VKP+ S+  S
Sbjct: 256 TSSIQYCETVCALGILRKHGSFIIKCFNILHHTTISIIALLCYCFQNVHIVKPIMSKGGS 315

Query: 216 VEMFLLAKGFR 226
            E++++A  F+
Sbjct: 316 GEIYIVAMNFQ 326


>gi|323509753|dbj|BAJ77769.1| cgd7_2570 [Cryptosporidium parvum]
          Length = 522

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAES 215
           T S+    T  AL +L   G F++K F     TT  I+ LL   FQ V  VKP+ S+  S
Sbjct: 256 TSSIQYCETVCALGILRKHGSFIIKCFNILHHTTISIIALLCYCFQNVHIVKPIMSKGGS 315

Query: 216 VEMFLLAKGFR 226
            E++++A  F+
Sbjct: 316 GEIYIVAMNFQ 326


>gi|195340901|ref|XP_002037051.1| GM12706 [Drosophila sechellia]
 gi|194131167|gb|EDW53210.1| GM12706 [Drosophila sechellia]
          Length = 788

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E+IR          ++D  +   G + I  +  + + LC+  T  AL++L
Sbjct: 272 FDESNQDSLNEYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G F+ K F   T  +  ++ L+ + FQ++  +KP +SR  + E +L+ K
Sbjct: 330 RPNGSFICKLFDLFTPFSVGLVYLMYQCFQQIAIIKPNSSRPANSERYLVCK 381


>gi|41055983|ref|NP_956427.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Danio
           rerio]
 gi|82177092|sp|Q803R5|MTR1_DANRE RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|27881850|gb|AAH44371.1| FtsJ methyltransferase domain containing 2 [Danio rerio]
          Length = 829

 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   +  + +  L       AL ++  GG FL KTF   T  +  ++ L
Sbjct: 352 FLMADGGFSVEGQENLQEILSKQLLLCQFLTALSVVRPGGHFLCKTFDLFTPFSVGLIYL 411

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KPV SR  + E +++ KG +
Sbjct: 412 LYLCFERVSLFKPVTSRPANSERYVVCKGLK 442


>gi|299116333|emb|CBN76137.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 760

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 177 GDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G F+ K F+  T  T  +L LL + F+++  VKP+ASR  S E +L+  GF
Sbjct: 485 GSFVCKLFECWTESTAALLYLLHRKFRRIAIVKPIASRPASGERYLVCTGF 535


>gi|123397252|ref|XP_001301053.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
 gi|121882182|gb|EAX88123.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
          Length = 690

 Score = 39.7 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAE 214
           + + LC+  T  AL +L  GG FL KTF   T  + ++L LL + F +   +KP  SR  
Sbjct: 406 KRLVLCQFLT--ALRVLRKGGSFLCKTFDVYTDFSVELLYLLAQCFNRFCIIKPYTSRPA 463

Query: 215 SVEMFLLAKGFRK 227
           + E +++  G R+
Sbjct: 464 NSERYVVGLGLRE 476


>gi|71027093|ref|XP_763190.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350143|gb|EAN30907.1| hypothetical protein, conserved [Theileria parva]
          Length = 980

 Score = 39.7 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 28/187 (14%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF------- 114
           +Q    + ++     SP S + +   + GSN      +  +I +++ IL   F       
Sbjct: 653 NQTTNIHDKVNSTSDSPNSTNNMNNSVNGSNL----FIFENIFELQTILN-NFPGDGNIE 707

Query: 115 --FKFDFLDL----DSW-----EFIRQAIGGNPDLVLSDMAYPTIGHRKI--DHLRTMSL 161
             F+F++ +L     S+     E +   +  N D +  D  Y  + +R++    L T  +
Sbjct: 708 LCFEFNYYNLFNSNQSYKSLIGEILESNLKRNCDFIFCD-PYNNVNYRELLYKELNTKYI 766

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
             A    AL  LN  GD +++ F   T  T  ILC L   F +VI  +P +    S E+F
Sbjct: 767 LVAQLIQALNCLNDNGDLVLRIFSLFTRFTTGILCCLSTVFDEVILYRPESVVNWSQEVF 826

Query: 220 LLAKGFR 226
           ++ K ++
Sbjct: 827 VICKNYK 833


>gi|37183431|gb|AAQ89602.1| FtsJ [Histophilus somni]
 gi|40804992|gb|AAR91753.1| FtsJ [Histophilus somni]
          Length = 50

 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 24 GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +
Sbjct: 8  ASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFK 50


>gi|327262300|ref|XP_003215963.1| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
           1-like [Anolis carolinensis]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 138 LVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDIL 193
            +++D  +   G   I  +  + ++LC+  T   L ++  GG F+ KTF   T  +  ++
Sbjct: 359 FLMADGGFSVEGQENIQEILSKQLTLCQFLT--GLSVIRTGGHFICKTFDLFTPFSVGLV 416

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            LL   F++V   KPV SR  + E +++ +G +
Sbjct: 417 YLLYCCFERVSIFKPVTSRPANSERYVVCRGLK 449


>gi|66362924|ref|XP_628428.1| adrift-like. FTSJ family RNA methylase [Cryptosporidium parvum Iowa
           II]
 gi|46229458|gb|EAK90276.1| adrift-like. FTSJ family RNA methylase [Cryptosporidium parvum Iowa
           II]
          Length = 1188

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAES 215
           T S+    T  AL +L   G F++K F     TT  I+ LL   FQ V  VKP+ S+  S
Sbjct: 256 TSSIQYCETVCALGILRKHGSFIIKCFNILHHTTISIIALLCYCFQNVHIVKPIMSKGGS 315

Query: 216 VEMFLLAKGFR 226
            E++++A  F+
Sbjct: 316 GEIYIVAMNFQ 326


>gi|326433791|gb|EGD79361.1| hypothetical protein PTSG_09772 [Salpingoeca sp. ATCC 50818]
          Length = 2151

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
           +  CEA     L  L+ GG  ++K F      T  +L LL+  F +V   KP  SRA + 
Sbjct: 397 LHYCEAVA--GLGCLDQGGAMVLKMFTLFEHPTIALLYLLRSLFDEVWVTKPACSRASNA 454

Query: 217 EMFLLAKGF 225
           E +++AKGF
Sbjct: 455 ETYIVAKGF 463


>gi|83286571|ref|XP_730220.1| cell division protein FtsJ [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489880|gb|EAA21785.1| FtsJ cell division protein, putative [Plasmodium yoelii yoelii]
          Length = 874

 Score = 39.3 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 143 MAYPTIGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           M  P +G     D      L  ++   A + L  GG F+ K F+      ++ +L+K F 
Sbjct: 1   MCAPNVGTTYSYDSFNQNILVLSSIKLAYKFLTKGGIFITKVFRNEEYVSLIWVLEKLFG 60

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           +V H+KP +SR  S E++L+   F
Sbjct: 61  EVKHIKPRSSREISSEIYLIGLNF 84


>gi|170068524|ref|XP_001868900.1| cell division protein ftsj [Culex quinquefasciatus]
 gi|167864514|gb|EDS27897.1| cell division protein ftsj [Culex quinquefasciatus]
          Length = 241

 Score = 39.3 bits (90), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+K +  G    +   +++++Q+V  +KP ASRA+S E F+LA+GF
Sbjct: 8   LLMKVWDNGEVPALEKNIQRYYQQVKRIKPRASRADSAENFVLARGF 54


>gi|317124694|ref|YP_004098806.1| hemolysin A [Intrasporangium calvum DSM 43043]
 gi|315588782|gb|ADU48079.1| hemolysin A [Intrasporangium calvum DSM 43043]
          Length = 267

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSNANNTRVVAI 101
           W +R+AYKLL+  E   +  + RR +D+G+S G ++QV     AAR+T  +  + +    
Sbjct: 60  WVSRAAYKLLRALELWPVDVAGRRCLDVGASTGGFTQVLLEHGAARVTALDVGHGQ---- 115

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
               + P++       D    +  +     + G  DLV+ D+++
Sbjct: 116 ----LAPVVASDPRVLDLPGTNIRDVGSGTVDGPFDLVVCDVSF 155


>gi|153217142|ref|ZP_01950906.1| cell division protein FtsJ [Vibrio cholerae 1587]
 gi|124113835|gb|EAY32655.1| cell division protein FtsJ [Vibrio cholerae 1587]
          Length = 60

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%)

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++L   G F+VK FQG   +D +  ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 4   QVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 59


>gi|330797403|ref|XP_003286750.1| hypothetical protein DICPUDRAFT_150730 [Dictyostelium purpureum]
 gi|325083268|gb|EGC36725.1| hypothetical protein DICPUDRAFT_150730 [Dictyostelium purpureum]
          Length = 737

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRA 213
           L  + LC+  T F  E L  GG F+ K F   T  T  ++ L+ +HF+     KP  SR 
Sbjct: 365 LAQLILCQILTMF--ETLGKGGSFVCKIFDTYTPFTIGLIYLVYQHFETFSICKPYTSRP 422

Query: 214 ESVEMFLLAKGF 225
            + E +++AK +
Sbjct: 423 LNSERYIIAKNY 434


>gi|159151708|gb|ABW92362.1| CG6379-PA [Drosophila simulans]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKT 183
           E+IR          ++D  +   G + I  +  + + LC+  T  AL++L   G F+ K 
Sbjct: 4   EYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLT--ALKILRPNGSFVCKL 61

Query: 184 FQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           F   T  +  ++ L+ + FQ++  +KP +SR  + E +L+ K  R
Sbjct: 62  FDLFTPFSVGLVYLMYQCFQQIAIIKPNSSRPANSERYLVCKYKR 106


>gi|147906507|ref|NP_001085512.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Xenopus
           laevis]
 gi|82184587|sp|Q6GQ76|MTR1_XENLA RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|49115039|gb|AAH72871.1| MGC80283 protein [Xenopus laevis]
          Length = 846

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   I  + +  L        L ++  GG F+ KTF   T  +  ++ L
Sbjct: 360 FMMADGGFSVEGQENIQEILSKQLLLCQFLVGLHVIRTGGHFICKTFDLFTPFSVGLIYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L   F++V   KP+ SR  + E +++ +G ++
Sbjct: 420 LYCCFERVCLFKPLTSRPANSERYVVCRGLKE 451


>gi|35187153|gb|AAQ84235.1| FtsJ [Histophilus somni]
          Length = 47

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 24 GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +
Sbjct: 8  ASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQ 44


>gi|89071363|ref|ZP_01158496.1| hypothetical protein OG2516_15874 [Oceanicola granulosus
          HTCC2516]
 gi|89043140|gb|EAR49384.1| hypothetical protein OG2516_15874 [Oceanicola granulosus
          HTCC2516]
          Length = 53

 Score = 38.9 bits (89), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 6  GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQ 40
          G S  RG+T KVK  R  + SSR WL R +NDPYV+
Sbjct: 4  GRSDSRGMTVKVKKKRGLKLSSRRWLERQLNDPYVR 39


>gi|270003399|gb|EEZ99846.1| hypothetical protein TcasGA2_TC002628 [Tribolium castaneum]
          Length = 747

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            +++D  +   G+  I  + + SL       ALE+L   G F+ K F   T   +  L L
Sbjct: 343 FMMADGGFSVEGNENIQEILSKSLYICQCLIALEILRKHGHFVTKVFDIFTCFSVGLLYL 402

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +   F+KV  +KP +SR  + E +++   ++
Sbjct: 403 IYHCFEKVCILKPNSSRPANSERYVICCNYK 433


>gi|189235701|ref|XP_967499.2| PREDICTED: similar to CG6379 CG6379-PA [Tribolium castaneum]
          Length = 573

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
            +++D  +   G+  I  + + SL       ALE+L   G F+ K F   T   +  L L
Sbjct: 360 FMMADGGFSVEGNENIQEILSKSLYICQCLIALEILRKHGHFVTKVFDIFTCFSVGLLYL 419

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +   F+KV  +KP +SR  + E +++   ++
Sbjct: 420 IYHCFEKVCILKPNSSRPANSERYVICCNYK 450


>gi|41407499|ref|NP_960335.1| TlyA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254775529|ref|ZP_05217045.1| TlyA [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395852|gb|AAS03718.1| TlyA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 269

 Score = 38.5 bits (88), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 39/118 (33%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSNA------- 93
           GW +R A+KLL   +  +I  + RR +D G+S G +++V     AA +   +        
Sbjct: 61  GWVSRGAHKLLGALDAFEIAVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAW 120

Query: 94  ---NNTRVVAID---ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
              ++ RVV ++   + D+ P                     +AIGG  DLV++D+++
Sbjct: 121 SLRSDARVVVVERTNVRDLTP---------------------EAIGGPADLVVADLSF 157


>gi|307192784|gb|EFN75874.1| Uncharacterized protein KIAA0082-like protein [Harpegnathos
           saltator]
          Length = 855

 Score = 38.5 bits (88), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + +F DL     ++   G     ++SD  +   G   I  + +  L       AL ++  
Sbjct: 348 QIEFRDL----IMKHTYGKGVHFMMSDGGFSVEGKENIQEILSKRLYLCQCLIALMIVRT 403

Query: 176 GGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           GG F+ K F   T   +  + L+ + F  V   KP +SR  + E +L+ KG
Sbjct: 404 GGHFVTKLFDLFTPFSVGLVYLMYRCFDSVCIFKPNSSRPANSERYLICKG 454


>gi|118462925|ref|YP_882261.1| hemolysin A [Mycobacterium avium 104]
 gi|118164212|gb|ABK65109.1| hemolysin A [Mycobacterium avium 104]
          Length = 269

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 39/118 (33%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSNA------- 93
           GW +R A+KLL   +  +I  + RR +D G+S G +++V     AA +   +        
Sbjct: 61  GWVSRGAHKLLGALDAFEIAVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAW 120

Query: 94  ---NNTRVVAID---ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
              ++ RVV ++   + D+ P                     +AIGG  DLV++D+++
Sbjct: 121 SLRSDARVVVVERTNVRDLTP---------------------EAIGGPADLVVADLSF 157


>gi|86355601|ref|YP_473269.1| MET [Hyphantria cunea nucleopolyhedrovirus]
 gi|86198206|dbj|BAE72370.1| MET [Hyphantria cunea nucleopolyhedrovirus]
          Length = 269

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 24/194 (12%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV------AARITG----SNANNTR 97
           R R   KL +I+++  + +    ++DL   PG ++          R+ G    +NA   R
Sbjct: 36  RPRCWRKLAEIDKQFGVCRGVATVLDLCGGPGEFASYILAHNPMCRVFGVTLAANAPYKR 95

Query: 98  VVAIDILDMEPILGVK-----FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            V     +   +LG       F K    DL        A G   DLVL+D A  + G   
Sbjct: 96  GVCTHS-NFTAVLGPDATGDVFNKNVLFDLSV------ACGNACDLVLADGAVDSQGREN 148

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVA 210
                   L    T  AL  L +GG+ ++K F      T  +L     HF     VKP +
Sbjct: 149 DQEQLNAPLMLRETQLALICLRLGGNCVLKVFDAFQHETLRVLQQFVCHFASWRLVKPPS 208

Query: 211 SRAESVEMFLLAKG 224
           SR  + E +L+  G
Sbjct: 209 SRPSNSERYLVCFG 222


>gi|15828642|ref|NP_326002.1| hemolysin A [Mycoplasma pulmonis UAB CTIP]
 gi|14089584|emb|CAC13344.1| HEMOLYSIN A [Mycoplasma pulmonis]
          Length = 238

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           ++   ++ + +R AYKLLQ  E  ++   ++ ++D+GSS G +SQVA  I G+     +V
Sbjct: 46  IEIVNVKEYVSRGAYKLLQAIEDFKLDFKDKIVLDIGSSTGGFSQVAL-INGA----KKV 100

Query: 99  VAID 102
            A+D
Sbjct: 101 YALD 104


>gi|149028400|gb|EDL83785.1| rCG22889, isoform CRA_b [Rattus norvegicus]
          Length = 187

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  S+E F + +G+
Sbjct: 6   ATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNSSIEAFAVCQGY 62


>gi|221041826|dbj|BAH12590.1| unnamed protein product [Homo sapiens]
          Length = 192

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  S+E F + +G+
Sbjct: 6   ATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGY 62


>gi|195477219|ref|XP_002100135.1| GE16874 [Drosophila yakuba]
 gi|194187659|gb|EDX01243.1| GE16874 [Drosophila yakuba]
          Length = 788

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 117 FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEML 173
           FD  + DS  E++R          ++D  +   G   I  +  + + LC+  T  AL++L
Sbjct: 272 FDESNQDSLNEYVRMHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLT--ALKIL 329

Query: 174 NIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G F+ K F   T   +  + L+ K F ++  +KP +SR  + E +L+ K
Sbjct: 330 RPNGSFVCKVFDLFTPFSVGLVYLMYKCFHQIAIIKPNSSRPANSERYLVCK 381


>gi|296164594|ref|ZP_06847161.1| cytotoxin/hemolysin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900013|gb|EFG79452.1| cytotoxin/hemolysin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 269

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 19/108 (17%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-- 103
           GW +R A+KL+   +   I  + RR +D G+S G +++V       +     VVA+D+  
Sbjct: 61  GWVSRGAHKLIGALDAFGIPVAGRRCLDAGASTGGFTEVLL-----HRGAAEVVAVDVGY 115

Query: 104 ------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
                 L  +P + V   + +  DL       +AIGG  DL+++D+++
Sbjct: 116 GQLAWSLRCDPRV-VVVERTNVRDLSP-----EAIGGPVDLIVADLSF 157


>gi|296116602|ref|ZP_06835212.1| putative RNA 2'-O-ribose methyltransferase MtfA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976814|gb|EFG83582.1| putative RNA 2'-O-ribose methyltransferase MtfA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 328

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILGVKFFKFD 118
           Q  ++    +DLG+SPG W+ VAAR          V+AID  D++P    + GV   +  
Sbjct: 184 QWPRAGETCLDLGASPGGWTWVAARC------GADVIAIDRADLDPRVAALPGVTTRRES 237

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSD-MAYPT----IGHRKIDHLRTMSLC 162
              LD       A   + D +LSD +AYPT    +  R ID  R   + 
Sbjct: 238 AFGLDP------ASMPHVDWLLSDIIAYPTRLLALARRWIDSGRVARMV 280


>gi|194764414|ref|XP_001964325.1| GF21495 [Drosophila ananassae]
 gi|190619250|gb|EDV34774.1| GF21495 [Drosophila ananassae]
          Length = 789

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 22/173 (12%)

Query: 71  IVDLGSSPG----------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK---- 116
             D+ + PG          SW       T   AN+ ++        EP       K    
Sbjct: 211 FTDMCAGPGGFSEYVLHRKSWEAKGFGFTLRGANDFKLDKFFAASPEPFDAYYGVKEDGN 270

Query: 117 -FDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEM 172
            FD  + DS  ++IR+         ++D  +   G   I  +  + + LC+  T  AL++
Sbjct: 271 IFDEANQDSLNDYIRRHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLT--ALKI 328

Query: 173 LNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           L   G F+ K F   T   +  + L+ K F ++  +KP +SR  + E +L+ K
Sbjct: 329 LRENGSFVCKVFDLFTPFSVGLVYLMYKCFHQISIIKPNSSRPANSERYLVCK 381


>gi|20093782|ref|NP_613629.1| 23S rRNA methylase [Methanopyrus kandleri AV19]
 gi|19886692|gb|AAM01559.1| Predicted 23S rRNA methylase containing THUMP domain [Methanopyrus
           kandleri AV19]
          Length = 357

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 49  ARSAYKLLQINEKHQ-ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           +R+  KL ++ ++H  I++    ++DLG++PG WS   AR          V A+D  D+ 
Sbjct: 183 SRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELAR----RVEPGTVYAVDPGDLH 238

Query: 108 PILGVKFFKFD---FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           P    K  K D    L   + E     I G   LV SD+          + + T +  E 
Sbjct: 239 P----KVLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDL----------NRIHTEA-TEV 283

Query: 165 ATFFALEMLNIGGDFLVKTFQ 185
               A E L  GG F+V+T +
Sbjct: 284 TLSVADEFLEPGG-FIVQTVK 303


>gi|312220921|emb|CBY00862.1| predicted protein [Leptosphaeria maculans]
          Length = 524

 Score = 38.1 bits (87), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 63  QILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
           ++L S RRI+DLG+ PG W+  +A +   +      +   DI   E  LG     ++  D
Sbjct: 271 KLLPSTRRILDLGTGPGHWAVGMAHQYPDAEVVGIDLTQWDIETTEATLGESQVMWELDD 330

Query: 122 LDSW 125
           LD W
Sbjct: 331 LDVW 334


>gi|270156633|ref|ZP_06185290.1| methyltransferase-like protein [Legionella longbeachae D-4968]
 gi|289164915|ref|YP_003455053.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269988658|gb|EEZ94912.1| methyltransferase-like protein [Legionella longbeachae D-4968]
 gi|288858088|emb|CBJ11950.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 304

 Score = 38.1 bits (87), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           IN P   RA L+ W A      L + EK+   +S  + +DLG+SPG W+ V   +     
Sbjct: 145 INPP--NRAYLKLWEA------LTLLEKYP--KSGDKALDLGASPGGWTYVMQSL----- 189

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA-YP 146
               V A+D   ++P +  +    ++L   ++      +  N D VLSD+A YP
Sbjct: 190 -GAHVTAVDKAPLDPKIA-QLPHINYLQQSAFAIDPMQLDQNYDWVLSDVACYP 241


>gi|167519316|ref|XP_001743998.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777960|gb|EDQ91576.1| predicted protein [Monosiga brevicollis MX1]
          Length = 181

 Score = 38.1 bits (87), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
           +  CEA     L  L  GG  ++KTF      TN ++ LL  HF +V   KP  SRA + 
Sbjct: 119 LHYCEAVA--GLGCLRRGGAMVLKTFTFFEACTNQLVYLLGVHFDEVWISKPACSRASNA 176

Query: 217 EMFLL 221
           E +L+
Sbjct: 177 ETYLV 181


>gi|240170143|ref|ZP_04748802.1| hypothetical protein MkanA1_12573 [Mycobacterium kansasii ATCC
           12478]
          Length = 269

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 19/112 (16%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-- 103
           GW +R A+KL+   +   +    RR +D G+S G +++V       +     VVA+D+  
Sbjct: 61  GWVSRGAHKLIGALDAFAVPVQGRRCLDAGASTGGFTEVLL-----DRGAAEVVAVDVGY 115

Query: 104 ------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 L  +P + V   + +  D+       +AIGG+ DL+++D+++ ++G
Sbjct: 116 GQLAWSLRNDPRVAV-VERTNVRDVSP-----EAIGGSVDLIVADLSFISLG 161


>gi|47224577|emb|CAG03561.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 768

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLL 196
           +++D  +   G   I  + +  L       AL  +  GG F+ KTF   T  +  ++ LL
Sbjct: 282 LMADGGFSVEGQENIQEVLSKQLLLCQFLTALSTVRTGGHFVCKTFDLFTPFSVGLIYLL 341

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              F+++   KPV SR  + E +++ +G +
Sbjct: 342 YLCFERISLFKPVTSRPANSERYVVCRGLK 371


>gi|194332651|ref|NP_001123814.1| FtsJ methyltransferase domain containing 2 [Xenopus (Silurana)
           tropicalis]
 gi|189442295|gb|AAI67621.1| LOC100170565 protein [Xenopus (Silurana) tropicalis]
          Length = 503

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   I  + +  L        L ++  GG F+ KTF   T  +  ++ L
Sbjct: 361 FMMADGGFSVEGQENIQEILSKQLLLCQFLVGLSVVRTGGHFICKTFDLFTPFSVGLIYL 420

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L   F+++   KP+ SR  + E +++ +G ++
Sbjct: 421 LYCCFERICLFKPLTSRPANSERYVVCRGLKE 452


>gi|290992761|ref|XP_002679002.1| predicted protein [Naegleria gruberi]
 gi|284092617|gb|EFC46258.1| predicted protein [Naegleria gruberi]
          Length = 570

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
           LV +D  +   G        T  L       AL  L  GG F+ K F   T  +  ++ +
Sbjct: 287 LVTADGGFCVDGVENSQEYLTQQLVLCQFLTALLTLRKGGCFVCKLFDLNTWFSASLIYV 346

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           + ++F+KV   KP +SR  + E +++ KG
Sbjct: 347 MYQYFEKVTIFKPFSSRPANSERYIVCKG 375


>gi|257056536|ref|YP_003134368.1| hemolysin A [Saccharomonospora viridis DSM 43017]
 gi|256586408|gb|ACU97541.1| hemolysin A [Saccharomonospora viridis DSM 43017]
          Length = 276

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 35  NDPYVQRAQLE-GWRARSAYKLLQINEK---HQILQSNRRIVDLGSSPGSWSQVAARITG 90
           N P V R + + GW +R AYKLL   E+     +    RR +D G+S G ++ V  R  G
Sbjct: 49  NTPIVVRTEDDPGWASRGAYKLLGALEEFTPRGLTVKGRRCLDAGASTGGFTDVLLR-EG 107

Query: 91  SNANNTRVVAIDI----LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           + +    VVA+D+    LD       +    D  ++ +      AIGG  +LV++D+++
Sbjct: 108 AES----VVAVDVGRGLLDWRLRTDDRVTVLDKTNVRT--LTPDAIGGVVELVVADLSF 160


>gi|224003169|ref|XP_002291256.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973032|gb|EED91363.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 599

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLC--EAATFFALEMLNIGGDFLVKTF--QGGTTNDI 192
           +LV++D  +     R  +   +++ C   + T  AL +L  GG F++K F  +   T  +
Sbjct: 400 NLVVADGGFD--AQRDSNDQESIAHCIIVSQTAAALSLLRPGGSFVLKMFGFRENGTRRL 457

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L  L   F+K+  VKP  SR  S E +L+  G+
Sbjct: 458 LRHLYGCFEKMTFVKPTLSRPASAERYLVCWGY 490


>gi|328722620|ref|XP_001945474.2| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           [Acyrthosiphon pisum]
          Length = 740

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           + F++   G    +V +D +     +        M L    T  AL +L  GG F+VK F
Sbjct: 242 YTFVKNRFGEEAHVVTADGSMDCQNNPDEQENVVMRLQIVETMVALMILQKGGSFVVKMF 301

Query: 185 QGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                N +  L LL   F  V   KPV S+  + E++++  G++
Sbjct: 302 TMFECNTLCRLYLLSCAFDSVKIKKPVTSKQGNSEVYVVCCGYK 345


>gi|82548302|gb|ABB82992.1| putative mRNA processing factor [uncultured organism HF10_3D09]
          Length = 437

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
           SWSQ   ++    A +    A+  L +E       F  DF   DS    +  IG  P  V
Sbjct: 145 SWSQDDWKLELHKAGHIPGAAM--LHVETPNKKVLFSGDFDTRDS----QLTIGAKP--V 196

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
            SD+ +    +   DH       E      +E++N GG  LV  F  G T D++ LL K+
Sbjct: 197 KSDVLFVEGTYGGRDHPPKEEENERFIERVIEVVNRGGTALVPAFANGRTQDVVMLLHKY 256

Query: 200 FQKV-IHVKPVASRAESVEM 218
             ++ +HV  +  R   ++M
Sbjct: 257 LPELNVHVDGMGKRVARLQM 276


>gi|213407428|ref|XP_002174485.1| SAM-dependent methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212002532|gb|EEB08192.1| SAM-dependent methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 284

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           QI  K+ I + N+ ++DLG +PG W++ AA          RV+ +D++         F +
Sbjct: 49  QIQRKYNIFKPNQLVLDLGCAPGYWNRYAASHVKPFG---RVIGLDVVPCHVDRNSSFLQ 105

Query: 117 FDFLDLD-SWEFIRQAI 132
             FL      E IR A+
Sbjct: 106 GSFLSSGVQHELIRMAV 122


>gi|291510282|gb|ADE10097.1| NADB Rossmann [Tremella fuciformis]
          Length = 96

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI------GGDFLVKTFQGGTTNDIL-CL 195
           M  P  G R  D   ++ L  AAT FA+++L        GG+ ++K F     +      
Sbjct: 1   MMAPMSGVRMRDVQASLDLVGAATGFAMDVLASSADGADGGNLVLKFFAHPDLDAFRRTQ 60

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+ HF KV   KP  SR ES E + +  G+R
Sbjct: 61  LEPHFHKVHVDKPKESRKESSEAYWVCLGYR 91


>gi|219127821|ref|XP_002184126.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404357|gb|EEC44304.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 466

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMS----LCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           G  DLV++D  +     R  DH   +S    +CE A    L          +  FQ    
Sbjct: 271 GKVDLVVADGGFD--AQRDSDHQEAISQKLVVCEIAAGLLLLKKGGKLMVKMFGFQTEII 328

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++  L   F+++I +KP++SR  S E +++ +GF+
Sbjct: 329 RSVMEDLAFTFEEIIALKPISSRPASAERYVVFRGFK 365


>gi|241999224|ref|XP_002434255.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215496014|gb|EEC05655.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 627

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 169 ALEMLNIGGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           A ++L  GG F++K  TF    +  +L LL   F+KV   KP  S+  + E++++ +GF+
Sbjct: 239 AFKLLADGGHFVLKMFTFFESFSVSLLYLLNCLFEKVTVKKPACSKPGNSEVYVVCRGFQ 298

Query: 227 K 227
           K
Sbjct: 299 K 299


>gi|332020260|gb|EGI60695.1| FtsJ methyltransferase domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 703

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESV 216
           + LCE  T   L +L  GG+FL+K F       +  + LL   FQ+V   KP +S+  + 
Sbjct: 265 LHLCE--TVACLHLLQKGGNFLLKLFTLFEHQSVCLMYLLSCTFQQVNVTKPASSKGGNS 322

Query: 217 EMFLLAKGFR 226
           EM+++   F+
Sbjct: 323 EMYVVCMNFK 332


>gi|302747316|gb|ADL63139.1| LaeA [Penicillium citrinum]
 gi|303387570|gb|ADM15718.1| LaeA [Penicillium citrinum]
          Length = 427

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 20/104 (19%)

Query: 70  RIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEPILGVK----FFKFDF----- 119
           RI+DLG   G WS +VA +       N+ VV +D+  ++P    K    +  FDF     
Sbjct: 191 RILDLGCGTGIWSIEVANKFP-----NSFVVGVDLAPIQPANFPKNCDFYAPFDFEAPWT 245

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           L  DSW+ I   +G       S  ++P++  R   HLR  +  E
Sbjct: 246 LGEDSWDIIHMQMGCG-----SVASWPSLYRRVFQHLRPGAWFE 284


>gi|255941860|ref|XP_002561699.1| Pc16g14010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|188482472|gb|ACD50375.1| secondary metabolism regulator LaeA [Penicillium chrysogenum]
 gi|211586322|emb|CAP94071.1| Pc16g14010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 427

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 20/98 (20%)

Query: 70  RIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEPILGVK----FFKFDF----- 119
           RI+DLG   G WS +VA +  GS      VV +D+  ++P    K    +  FDF     
Sbjct: 191 RILDLGCGTGIWSIEVANKFPGSF-----VVGVDLAPIQPTNTPKNCDFYAPFDFEAPWT 245

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           +  DSW+ I   +G       S  ++P++  R   HL+
Sbjct: 246 MGEDSWDIIHMQMGCG-----SVASWPSLYRRVFQHLK 278


>gi|156543832|ref|XP_001606646.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 855

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
            +++D  +   G   I  + +  L       AL ++  GG F+ K F   T  +  ++ +
Sbjct: 369 FMMADGGFSVEGQENIQEILSKQLYLCQCLVALMIVRTGGHFVTKLFDLFTPFSGGLVYI 428

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + + F +V   KP  SR  + E +L+ KG R
Sbjct: 429 MYRCFDQVSIFKPNTSRPANSERYLICKGKR 459


>gi|157114675|ref|XP_001652367.1| hypothetical protein AaeL_AAEL006950 [Aedes aegypti]
 gi|108877186|gb|EAT41411.1| conserved hypothetical protein [Aedes aegypti]
          Length = 857

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCL 195
           ++++D  +       I  + +  L       AL ++  GG F+VK F   T  +  ++ L
Sbjct: 355 VMMADGGFSVENQENIQEILSKRLYLCQILMALNVVRTGGHFVVKLFDLFTPFSVGLIYL 414

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAK 223
           + K F+K+   KP  SR  + E +L+ K
Sbjct: 415 VYKCFKKICICKPNTSRPANSERYLVCK 442


>gi|282163383|ref|YP_003355768.1| hypothetical protein MCP_0713 [Methanocella paludicola SANAE]
 gi|282155697|dbj|BAI60785.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 215

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 38  YVQRAQLEGWRARSAY-KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
           Y ++  +EG      Y KL  I E   IL+    ++D+GSS G +   A+ I       +
Sbjct: 44  YGRKVAIEGEDMPEGYFKLKGIQEASGILRPGDVVLDIGSSAGGFLMFASGIA------S 97

Query: 97  RVVAIDILD--MEPILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
           RVV I+     +EP+  V  ++     +  D++     A+GG  D++L+DM
Sbjct: 98  RVVGIEFSREFLEPLSNVEKEYPGVKVMFGDAFRMDLAALGGPYDVILNDM 148


>gi|262202727|ref|YP_003273935.1| hemolysin A [Gordonia bronchialis DSM 43247]
 gi|262086074|gb|ACY22042.1| hemolysin A [Gordonia bronchialis DSM 43247]
          Length = 275

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 39  VQRAQLEGWRARSAYKL---LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           V   Q E W +R A+KL   L   E   +  + RR +D G+S G ++ V  R        
Sbjct: 54  VVEEQGEDWASRGAHKLIGALDAFEPAGLEVAGRRCLDAGASTGGFTDVLLR-----RGA 108

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLSDMAYPTIG 149
            RVVA+D+   + I   +    D +++     +R      IGG  D+V++D+++ ++G
Sbjct: 109 ARVVAVDVGYGQLIW--RLQNDDRVEIHDRTNVRHLEPDEIGGPVDVVVADLSFISLG 164


>gi|194755743|ref|XP_001960143.1| GF11674 [Drosophila ananassae]
 gi|190621441|gb|EDV36965.1| GF11674 [Drosophila ananassae]
          Length = 702

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 22/134 (16%)

Query: 116 KFDFLDLDSWEFIRQAIG--------------------GNPDLVLSDMAYPTIGHRKIDH 155
           +F F  LD+W F +   G                    G  DL+ +D +           
Sbjct: 191 RFIFHTLDNWLFHKDLTGNLLNVTNIESMAARCAADFQGKVDLITADGSIDCAAQPDCQE 250

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRA 213
              + L  A  F AL++L+ GG+F+VK F      +  +L +L   F +V   KP  S+ 
Sbjct: 251 EIVVRLFFAEVFSALKILSPGGNFVVKMFTLFEACSVSLLYMLNCIFHQVHIFKPATSKR 310

Query: 214 ESVEMFLLAKGFRK 227
            + E++++   + K
Sbjct: 311 GNSEVYVICLDYLK 324


>gi|303248880|ref|ZP_07335129.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302489749|gb|EFL49682.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 191

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEK--HQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
             P++  A   GW A S  +L+   E     +++     VD+G  PG ++   AR+ G  
Sbjct: 10  ESPHICPASHAGWLASSLRRLVHHPEAMLRGLVREGDTAVDIGCGPGFFTLPLARLVG-- 67

Query: 93  ANNTRVVAIDILDMEPILGV 112
             N RV+A+D+   E +LG+
Sbjct: 68  -RNGRVIAVDL--QEEMLGM 84


>gi|296808907|ref|XP_002844792.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238844275|gb|EEQ33937.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 352

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           K  + QS RR++D+GS PG W    A   G    NT ++A DI   +P
Sbjct: 109 KCALPQSIRRVLDVGSGPGDW----ALAMGEEFPNTEIIATDISLFDP 152


>gi|195153363|ref|XP_002017597.1| GL17223 [Drosophila persimilis]
 gi|194113393|gb|EDW35436.1| GL17223 [Drosophila persimilis]
          Length = 704

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTN 190
            G  DL+ +D +              + L  A T  AL +L  GG F+VK F      + 
Sbjct: 215 SGGVDLITADGSIDCAAQPDCQEEIVVRLFFAETICALRILKTGGKFVVKMFTLFEACSV 274

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L +L   F++V   KP  S+  + E++++   ++K
Sbjct: 275 SLLYMLNCIFEQVHIYKPATSKRGNSEVYVICLNYQK 311


>gi|125811195|ref|XP_001361785.1| GA18609 [Drosophila pseudoobscura pseudoobscura]
 gi|54636961|gb|EAL26364.1| GA18609 [Drosophila pseudoobscura pseudoobscura]
          Length = 704

 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTN 190
            G  DL+ +D +              + L  A T  AL +L  GG F+VK F      + 
Sbjct: 215 SGGVDLITADGSIDCAAQPDCQEEIVVRLFFAETICALRILKTGGKFVVKMFTLFEACSV 274

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L +L   F++V   KP  S+  + E++++   ++K
Sbjct: 275 SLLYMLNCIFEQVHIYKPATSKRGNSEVYVICLNYQK 311


>gi|119964587|ref|YP_950783.1| Mv-ORF53 peptide [Maruca vitrata MNPV]
 gi|119514430|gb|ABL76005.1| Mv-ORF53 peptide [Maruca vitrata MNPV]
          Length = 262

 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 16/189 (8%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV---------AARITGSNANNTRV 98
           + R   KL +I++K  + +     +DL   PG ++           A  +T +N N T V
Sbjct: 36  KPRCWRKLSEIDKKFNVCKHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTN-NLTCV 94

Query: 99  VAIDIL---DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
               I    +   I G      D  D +    I    G   DLVL+D +    G      
Sbjct: 95  YKPTIYKRKNFATITGPDK-SGDVFDKNVIFEISVKCGNTCDLVLADGSVDVNGRENEQE 153

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK--KHFQKVIHVKPVASRA 213
                L    T   L  L  GG+ ++K F       I  L K   HF+K +  KP +SR 
Sbjct: 154 RLNFDLIMCETQIILICLRTGGNCVLKVFDAFQRETIQMLNKFINHFEKWVLYKPPSSRP 213

Query: 214 ESVEMFLLA 222
            + E +L+ 
Sbjct: 214 ANSERYLIC 222


>gi|332031624|gb|EGI71096.1| S-adenosyl-L-methionine-dependent methyltransferase ftsjd2
           [Acromyrmex echinatior]
          Length = 764

 Score = 35.8 bits (81), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 118 DFLDLDSWEFIRQAIGGNPD-----LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D  D  +    R  + G+ D      ++SD  +   G   I  + +  L       AL +
Sbjct: 232 DVFDTQNQREFRSIVMGHTDGKGVHFMMSDGGFSVEGQENIQEILSKQLYLCQCLVALMI 291

Query: 173 LNIGGDFLVKTFQGGTTNDI-LCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +  GG F+ K F   T+  + L  L  H F+ +   KP  SR  + E +L+ K  +K
Sbjct: 292 VRPGGHFVTKLFDLFTSFSVGLVYLMYHCFESISIFKPNTSRPANSERYLICKRKKK 348


>gi|254821088|ref|ZP_05226089.1| TlyA [Mycobacterium intracellulare ATCC 13950]
          Length = 269

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 39/118 (33%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSNA------- 93
           GW +R A+KL+   +   I  + RR +D G+S G +++V     AA +   +        
Sbjct: 61  GWVSRGAHKLIGALDAFGISVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAW 120

Query: 94  ---NNTRVVAID---ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
              ++ RVV ++   + D+ P                     +AIGG  DLV++D+++
Sbjct: 121 SLRSDARVVVVERTNVRDLTP---------------------EAIGGPADLVVADLSF 157


>gi|251796645|ref|YP_003011376.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp. JDR-2]
 gi|247544271|gb|ACT01290.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp. JDR-2]
          Length = 339

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 45  EGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           EG  +R+ +KLL+   +  +  S  R  VD+G++PG W+ +            RV AID 
Sbjct: 176 EGQISRAKFKLLEAEREFGLDYSMFRSAVDIGAAPGGWTSLLLE------RGLRVTAIDP 229

Query: 104 LDMEPILG 111
            DM P L 
Sbjct: 230 GDMHPSLA 237


>gi|289447308|ref|ZP_06437052.1| LOW QUALITY PROTEIN: inorganic polyphosphate/ATP-NAD kinase ppnK
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420266|gb|EFD17467.1| LOW QUALITY PROTEIN: inorganic polyphosphate/ATP-NAD kinase ppnK
           [Mycobacterium tuberculosis CPHL_A]
          Length = 216

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 34/124 (27%)

Query: 37  PYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGS 91
           P+V  ++   W +R A+KL+   E   I  + RR +D G+S G +++V     AA +  +
Sbjct: 1   PWVTDSE-RAWVSRGAHKLVGALEAFAIAVAGRRCLDAGASTGGFTEVLLDRGAAHVVAA 59

Query: 92  NA----------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           +           N+ RVV ++  +                        +AIGG  DLV++
Sbjct: 60  DVGYGQLAWSLRNDPRVVVLERTNAR------------------GLTPEAIGGRVDLVVA 101

Query: 142 DMAY 145
           D+++
Sbjct: 102 DLSF 105


>gi|195584389|ref|XP_002081989.1| GD11317 [Drosophila simulans]
 gi|194193998|gb|EDX07574.1| GD11317 [Drosophila simulans]
          Length = 701

 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 116 KFDFLDLDSWEFIRQAIG--------------------GNPDLVLSDMAYPTIGHRKIDH 155
           +F F  LD+W F +   G                    G  DLV +D +           
Sbjct: 188 RFIFHTLDNWLFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTADGSIDCAAQPDCQE 247

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRA 213
              + L  A    AL +L+ GG+FLVK F      +  +L  L   F++V   KP  S+ 
Sbjct: 248 EIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCIFEEVHIFKPATSKR 307

Query: 214 ESVEMFLLAKGFRK 227
            + E++++   + K
Sbjct: 308 GNSEVYVICLNYNK 321


>gi|195335398|ref|XP_002034352.1| GM21824 [Drosophila sechellia]
 gi|194126322|gb|EDW48365.1| GM21824 [Drosophila sechellia]
          Length = 701

 Score = 35.4 bits (80), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 116 KFDFLDLDSWEFIRQAIG--------------------GNPDLVLSDMAYPTIGHRKIDH 155
           +F F  LD+W F +   G                    G  DLV +D +           
Sbjct: 188 RFIFHTLDNWLFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTADGSIDCAAQPDCQE 247

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRA 213
              + L  A    AL +L+ GG+FLVK F      +  +L  L   F++V   KP  S+ 
Sbjct: 248 EIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCIFEEVHIFKPATSKR 307

Query: 214 ESVEMFLLAKGFRK 227
            + E++++   + K
Sbjct: 308 GNSEVYVICLNYNK 321


>gi|23577881|ref|NP_703059.1| hypothetical protein [Rachiplusia ou MNPV]
 gi|23476526|gb|AAN28073.1| unknown [Rachiplusia ou MNPV]
          Length = 262

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-SNANNTRVVAIDILDM 106
           + R   KL +I++K  + +     +DL   PG ++     +     A    +    +   
Sbjct: 36  KPRCWRKLSEIDKKFHVCRHVNTFLDLCGGPGEFANYTMSLNPFCKAYGVTLTNNSVCVY 95

Query: 107 EPIL-GVKFFKF--------DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           +P +   K F          D  D +    I    G   DLVL+D +    G        
Sbjct: 96  KPTVRKRKNFTTVTGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 155

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK--KHFQKVIHVKPVASRAES 215
              L    T   L  L  GG+ ++K F       I  L K   HF+K I  KP +SR  +
Sbjct: 156 NFDLIMCETQLILICLRPGGNCVLKVFDAFEHETIQMLNKFVNHFEKWILYKPPSSRPAN 215

Query: 216 VEMFLLA 222
            E +L+ 
Sbjct: 216 SERYLIC 222


>gi|145591929|ref|YP_001153931.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283697|gb|ABP51279.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 425

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 88  ITGSNANNTRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQA----IGGNPDLVLSD 142
           +T  NA +    A+ ++++E   G V  F  DF  +D+   +R A    +  NPD+V+ +
Sbjct: 134 LTAYNAGHIPGSALAVIEVE---GRVVVFTGDFNTVDT-NLLRGADVYNLPKNPDVVIME 189

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
             Y +  H   D L    +         E+L  GG  L+ +F  G   +IL  L KH
Sbjct: 190 ATYASANHPPRDKLEKEFVQSVK-----EVLEGGGSVLIPSFALGRAQEILLTLVKH 241


>gi|296117993|ref|ZP_06836576.1| cytotoxin/hemolysin [Corynebacterium ammoniagenes DSM 20306]
 gi|295969224|gb|EFG82466.1| cytotoxin/hemolysin [Corynebacterium ammoniagenes DSM 20306]
          Length = 271

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           W +R A+KLL   E   +   +++++D G+S G ++ V  R   SN     V A+D+
Sbjct: 63  WASRGAHKLLGALEAFDVDLKDKKVLDAGASTGGFTDVCLRAGASN-----VYAVDV 114


>gi|309776312|ref|ZP_07671300.1| O-acetyl-L-homoserine sulfhydrylase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915908|gb|EFP61660.1| O-acetyl-L-homoserine sulfhydrylase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 421

 Score = 34.7 bits (78), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 24/122 (19%)

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR---------T 158
           PI     +K+D     S EF+ Q      DL      Y  I +  +D +           
Sbjct: 23  PIYQSTTYKYD-----STEFVGQLF----DLTAEGHMYSRISNPTVDAVEKKIAALEGGV 73

Query: 159 MSLC----EAATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            +LC    ++ATF AL  +   GD LV   T  GGT N +    +K   +V +V P AS+
Sbjct: 74  GALCTTSGQSATFIALMNVLESGDHLVASSTIYGGTVNLLSITFQKFGIEVSYVDPDASQ 133

Query: 213 AE 214
           AE
Sbjct: 134 AE 135


Searching..................................................done


Results from round 2




>gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039990|gb|ACT56786.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 227

 Score =  328 bits (841), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE
Sbjct: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL
Sbjct: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL
Sbjct: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK
Sbjct: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227


>gi|315122262|ref|YP_004062751.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495664|gb|ADR52263.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 242

 Score =  311 bits (796), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 194/227 (85%), Positives = 210/227 (92%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           MVK  G SSRRGL QKVKN SCQ SS  WL+RHINDPYVQ+AQLEGWRARSAYKL+QINE
Sbjct: 16  MVKLLGGSSRRGLIQKVKNNSCQESSHRWLSRHINDPYVQQAQLEGWRARSAYKLIQINE 75

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KH+IL  +RRIVDLGS+PGSWSQVAAR+T + +N+ R+VAIDILDMEPILGVKFFKFDFL
Sbjct: 76  KHRILHPSRRIVDLGSAPGSWSQVAARMTAAKSNDIRIVAIDILDMEPILGVKFFKFDFL 135

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           DL+SWEFI QAIGGNPDLVLSDMAYPTIGHRK DHLRTMSLCEAATFFALEMLN GGDFL
Sbjct: 136 DLESWEFIHQAIGGNPDLVLSDMAYPTIGHRKTDHLRTMSLCEAATFFALEMLNEGGDFL 195

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           VKTFQGGTT DILCLLKK+FQKVIH+KP+ASRAESVEMFLLAKGF+K
Sbjct: 196 VKTFQGGTTQDILCLLKKNFQKVIHIKPMASRAESVEMFLLAKGFKK 242


>gi|222147674|ref|YP_002548631.1| cell division protein [Agrobacterium vitis S4]
 gi|254809545|sp|B9JSD2|RLME_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|221734662|gb|ACM35625.1| cell division protein [Agrobacterium vitis S4]
          Length = 261

 Score =  301 bits (771), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 137/228 (60%), Positives = 177/228 (77%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M KPP  G+ + R L QKVK    + SSR WL RHINDPYVQRA+LEG+RAR+A+KLL+I
Sbjct: 1   MTKPPIGGNRTGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA +TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHNILKGARRIIDLGAAPGSWSQIAANVTGSTDSDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  +   + +A+GG PD+V+SDMA PT GH+K DH+RTM LCE A +FA+E+L  GG 
Sbjct: 121 FLDPQAPALLMEAVGGVPDVVISDMAAPTTGHQKTDHIRTMHLCEVAAYFAVEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++VIH+KP +SR ESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTEKDLLNMLKQNFKQVIHIKPASSRQESVEMFLLAKGFK 228


>gi|222084954|ref|YP_002543483.1| cell division protein [Agrobacterium radiobacter K84]
 gi|254809544|sp|B9J9U0|RLME_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|221722402|gb|ACM25558.1| cell division protein [Agrobacterium radiobacter K84]
          Length = 239

 Score =  301 bits (770), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 141/228 (61%), Positives = 180/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M KP   G+ + R L Q+VK +  + SSR+WL+RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKPTIAGNRTGRKLGQRVKKKKLKASSREWLHRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKHQIL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GV   + D
Sbjct: 61  DEKHQILKGARRIIDLGAAPGSWSQIAAKVTGSTEDDIRVAAIDFLEMAHLPGVTILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD D+ + +  A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPDAPQRLVDAVGGEPDLVMSDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L LLK++F++V+HVKP ASRAESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNLLKQNFRQVVHVKPGASRAESVEMFLLAKGFK 228


>gi|241203222|ref|YP_002974318.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857112|gb|ACS54779.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 239

 Score =  299 bits (767), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 139/228 (60%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGARRIIDLGAAPGSWSQIAAKVTGSTDDDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPTAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|190890496|ref|YP_001977038.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli CIAT 652]
 gi|226705303|sp|B3PQL4|RLME_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|190695775|gb|ACE89860.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli CIAT 652]
          Length = 239

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 139/228 (60%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  RRI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKYHILRGARRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|116250616|ref|YP_766454.1| ribosomal RNA methyltransferase/cell division FtsJ protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|143461320|sp|Q1ML15|RLME_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115255264|emb|CAK06339.1| putative ribosomal RNA methyltransferase/cell division FtsJ protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 139/228 (60%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGARRIIDLGAAPGSWSQIAAKVTGSTDDDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|15964509|ref|NP_384862.1| cell division protein [Sinorhizobium meliloti 1021]
 gi|307308457|ref|ZP_07588161.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           BL225C]
 gi|307319020|ref|ZP_07598451.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           AK83]
 gi|81635050|sp|Q92RT9|RLME_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|15073686|emb|CAC45328.1| Probable cell division protein [Sinorhizobium meliloti 1021]
 gi|306895434|gb|EFN26189.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           AK83]
 gi|306901060|gb|EFN31668.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium meliloti
           BL225C]
          Length = 245

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 142/228 (62%), Positives = 181/228 (79%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ S R L QKVK    + SSR W+ RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKSPIGGNRSGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH+IL   +RI+DLG++PGSWSQ+AA++T S   + RV AID L+M+PI GV+F + D
Sbjct: 61  DEKHKILAGAKRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQMD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD ++ E ++QAIGG PD+VLSDMA PT GHR+ DH+RTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPEAPENLKQAIGGAPDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFK 228


>gi|209548035|ref|YP_002279952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226705304|sp|B5ZR94|RLME_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|209533791|gb|ACI53726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 239

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 139/228 (60%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  +RI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGAKRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPTAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAQFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP ASRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAKGFK 228


>gi|327189976|gb|EGE57100.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli CNPAF512]
          Length = 239

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 139/228 (60%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  RRI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKYHILRGARRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|163758367|ref|ZP_02165455.1| probable cell division protein [Hoeflea phototrophica DFL-43]
 gi|162284656|gb|EDQ34939.1| probable cell division protein [Hoeflea phototrophica DFL-43]
          Length = 247

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 130/226 (57%), Positives = 172/226 (76%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M KPP   + R L QKVK    + SSR W+ RH+NDPYVQ+A+ EG+R+R+ YKLL+I+ 
Sbjct: 1   MTKPPTGPTGRKLGQKVKKGKLKASSRRWVERHLNDPYVQQARQEGYRSRAVYKLLEIDT 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KH+IL   RRI+DLG++PG WSQ++A++T S   + +VVAID L+M+ + GV+F + DFL
Sbjct: 61  KHKILDKARRIIDLGAAPGGWSQISAKVTDSTDADPKVVAIDFLEMDGLPGVRFLQMDFL 120

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  +   +  A+GG PD+VLSDMA PT GHR+ DHLRTM LCE A  FA+E+L  GG FL
Sbjct: 121 DDAAPRALMDALGGAPDVVLSDMAAPTTGHRRTDHLRTMHLCEVAAHFAVEVLAPGGHFL 180

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            KTFQGG+ ND+L +LKK+F+ VIH+KP +SRAESVEMF+LAKGF+
Sbjct: 181 AKTFQGGSENDLLVMLKKNFKSVIHIKPPSSRAESVEMFVLAKGFK 226


>gi|325292005|ref|YP_004277869.1| cell division protein [Agrobacterium sp. H13-3]
 gi|325059858|gb|ADY63549.1| cell division protein [Agrobacterium sp. H13-3]
          Length = 246

 Score =  297 bits (760), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 134/228 (58%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSR--RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P S++R  R + QKVK    + SSR WL RHINDPYVQRA+LEG+RAR+A+KLL+I
Sbjct: 1   MSKAPTSTNRTGRKIGQKVKKTKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           N+KHQIL+   RI+DLG++PGSWSQ+A+++T S  ++ RV AID L+++PI GVK  + D
Sbjct: 61  NDKHQILKGATRIIDLGAAPGSWSQIASKVTDSTEDDIRVAAIDFLEIDPIPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + + + +A+GG PDLVLSDMA PT GH+K DH+RTM LCE A  FA+++L  GG 
Sbjct: 121 FLDPTAPDQLMEAVGGTPDLVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT   +L +LKK+F++V+H+KP +SR+ESVEMFLLAK F+
Sbjct: 181 FLAKTFQGGTEKALLDMLKKNFKQVLHIKPASSRSESVEMFLLAKHFK 228


>gi|159184390|ref|NP_353643.2| cell division protein [Agrobacterium tumefaciens str. C58]
 gi|81496462|sp|Q8UHR0|RLME_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|159139703|gb|AAK86428.2| cell division protein [Agrobacterium tumefaciens str. C58]
          Length = 246

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 134/228 (58%), Positives = 178/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSR--RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P S++R  R + QKVK    + SSR WL RHINDPYVQRA+LEG+RAR+A+KLL+I
Sbjct: 1   MSKAPTSTNRTGRKIGQKVKKTKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           N+KHQIL+   RI+DLG++PGSWSQ+A+++T S  ++ RV AID L+++PI GVK  + D
Sbjct: 61  NDKHQILKGATRIIDLGAAPGSWSQIASKVTDSTEDDIRVAAIDFLEIDPIPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + + + +A+GG PDLVLSDMA PT GH+K DH+RTM LCE A  FA+++L  GG 
Sbjct: 121 FLDPTAPDQLMEAVGGTPDLVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT   +L +LKK+F++V+H+KP +SR+ESVEMFLLAK F+
Sbjct: 181 FLAKTFQGGTEKALLDMLKKNFKQVLHIKPASSRSESVEMFLLAKHFK 228


>gi|227820952|ref|YP_002824922.1| putative ribosomal RNA large subunit methyltransferase J
           [Sinorhizobium fredii NGR234]
 gi|254809557|sp|C3MGQ4|RLME_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|227339951|gb|ACP24169.1| putative ribosomal RNA large subunit methyltransferase J
           [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 144/228 (63%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ S R L QKVK    + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKSPIGGNRSGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH+IL   RRI+DLG++PGSWSQ+AA++T S   + RV AID L+M+PI GV+F + D
Sbjct: 61  DEKHKILAGARRIIDLGAAPGSWSQIAAKVTNSTDADPRVAAIDFLEMDPIPGVRFLQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD ++ E +++AIGG PDLVLSDMA PT GHR+ DHLRTM LCE A  FA+++L  GG 
Sbjct: 121 FLDPEAPEKLKEAIGGTPDLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F +VIHVKP +SR ESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAKGFK 228


>gi|86356435|ref|YP_468327.1| cell division protein [Rhizobium etli CFN 42]
 gi|123512933|sp|Q2KC36|RLME_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|86280537|gb|ABC89600.1| cell division protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  295 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 136/228 (59%), Positives = 176/228 (77%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  +RI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GV   + D
Sbjct: 61  DEKYHILRGAKRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVWILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  +   + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPGKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228


>gi|150395598|ref|YP_001326065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium medicae
           WSM419]
 gi|189040341|sp|A6U6F0|RLME_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150027113|gb|ABR59230.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium medicae
           WSM419]
          Length = 245

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 142/228 (62%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSR--RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M KPP  S+R  R L QKVK    + SSR W+ RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKPPVGSNRSGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH+IL   RRI+DLG++PGSWSQ+AA++T S   + RV AID L+M+ I GV F + D
Sbjct: 61  DEKHKILAGARRIIDLGAAPGSWSQIAAKVTNSTDTDPRVAAIDFLEMDAIPGVSFLQMD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E +++AIGG PD+VLSDMA PT GHR+ DH+RTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPQAPEKLKEAIGGAPDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  D+L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFK 228


>gi|13476893|ref|NP_108462.1| cell division protein ftsJ [Mesorhizobium loti MAFF303099]
 gi|81776173|sp|Q983F8|RLME_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|14027654|dbj|BAB53923.1| cell division protein; FtsJ [Mesorhizobium loti MAFF303099]
          Length = 265

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 123/230 (53%), Positives = 166/230 (72%), Gaps = 4/230 (1%)

Query: 1   MVKPP---GSSSRRGLTQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K P   GS+  R L  ++K +S  + SSR WL RHINDPYVQR++ +G+R+R+AYKL+
Sbjct: 1   MTKKPENPGSAGIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLI 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I++KH +L+   +++DLG++PG W QVAA  T S A N  VV ID L+M+ + G     
Sbjct: 61  EIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVVGIDYLEMDAVPGAPVLL 120

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DFLD D+ + + +A+GGNPD+VLSDMA PT GH++ DH+RTM LCE A  FAL +L  G
Sbjct: 121 MDFLDPDAPQKLAEALGGNPDVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPG 180

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G FL KTFQGG  N++L +LKK+F+ V HVKP ASR ESVE++LLAK F+
Sbjct: 181 GHFLAKTFQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230


>gi|239834096|ref|ZP_04682424.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
           intermedium LMG 3301]
 gi|239822159|gb|EEQ93728.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
           intermedium LMG 3301]
          Length = 241

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 112/223 (50%), Positives = 163/223 (73%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G +    L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ 
Sbjct: 18  GGAGSSNLQVRVKKKAGTIKESSRRWLQRHLNDPYVHKSKQDGYRSRAAYKLIEINDRYN 77

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L+  ++I+DLG++PG WSQ+AA++ GS   +  VV ID L ++P+ GV   + DFLD +
Sbjct: 78  LLKKGQKIIDLGAAPGGWSQIAAKVVGSTDEDPHVVGIDYLHVDPLPGVVLLEMDFLDDE 137

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           +   + +A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KT
Sbjct: 138 APRKLMEALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKT 197

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGGT N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 198 FQGGTENELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 240


>gi|319784202|ref|YP_004143678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170090|gb|ADV13628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 247

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/230 (52%), Positives = 166/230 (72%), Gaps = 4/230 (1%)

Query: 1   MVKPP---GSSSRRGLTQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K P   GS+S R L  ++K +S  + SSR WL RHINDPYVQR++ +G+R+R+AYKL+
Sbjct: 1   MTKKPEKPGSASIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLI 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I++KH +L+   +++DLG++PG W QVAA  T S A+   V+ ID L+M+ + G     
Sbjct: 61  EIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTADKPHVIGIDYLEMDAVPGAPVLL 120

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DFLD  + + + +A+GG+PD+VLSDMA PT GH++ DH+RTM LCE A  FAL +L  G
Sbjct: 121 MDFLDPQAPQKLAEALGGDPDIVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPG 180

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G FL KTFQGG  N++L +LKK+F+ V HVKP ASR ESVE++LLAK F+
Sbjct: 181 GHFLAKTFQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230


>gi|328544053|ref|YP_004304162.1| ribosomal RNA large subunit methyltransferase J [polymorphum gilvum
           SL003B-26A1]
 gi|326413797|gb|ADZ70860.1| Ribosomal RNA large subunit methyltransferase J [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/228 (52%), Positives = 156/228 (68%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M      S  RGL  +VK     + SS  WL R +NDPYV+RA++EG+R+R+AYKL++I+
Sbjct: 1   MSGSKRGSGDRGLHVRVKTAAKRKESSTRWLERQLNDPYVRRAKMEGYRSRAAYKLIEID 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +KH++L+  +R+VDLG++PG W QVA    GS   N  VV ID LDM+ I GV F + DF
Sbjct: 61  DKHRLLKPGQRVVDLGAAPGGWCQVAVERVGSTPENPLVVGIDYLDMDHIPGVVFLRKDF 120

Query: 120 LDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           LD D+   +  A+GG+ PD+VLSDMA PT GHR+ DHLRT  L E A  FA E L  GG 
Sbjct: 121 LDDDAPAALMAALGGHRPDVVLSDMAAPTTGHRQTDHLRTTHLFEVAILFARENLAPGGS 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL K F+GGT N +L  LK+ F+ V+HVKP ASR ES E++++AKGFR
Sbjct: 181 FLAKVFRGGTENALLADLKRDFETVVHVKPPASRKESPELYVVAKGFR 228


>gi|52355215|gb|AAU44782.1| FtsJ [Bartonella vinsonii subsp. arupensis]
          Length = 240

 Score =  289 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 158/223 (70%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL++INE+++
Sbjct: 13  GGSGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++I+DLG++PG W QVA R+ GSN     VV ID L + P+ GV   K DFL  D
Sbjct: 73  FLKKGQKIIDLGAAPGGWCQVAVRVVGSNDQKPSVVGIDYLHVNPLPGVVMLKMDFLHAD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K 
Sbjct: 133 APQKLIDALGEKPDVVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L  LK++F+ V HVKP ASR+ESVE++LLA GF+
Sbjct: 193 FQGGAENTLLTTLKQNFKTVHHVKPPASRSESVELYLLALGFK 235


>gi|114705167|ref|ZP_01438075.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
 gi|114539952|gb|EAU43072.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
          Length = 244

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/221 (50%), Positives = 165/221 (74%), Gaps = 1/221 (0%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           +++ RGL  KVK  R  + SSR W+ R +NDPYV++A+ +G+R+R+AYKL+++++++++L
Sbjct: 4   TNNPRGLHVKVKKKRGLKASSRRWIERQLNDPYVRQAKADGYRSRAAYKLIEMDDRYKLL 63

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R+VDLG++PG W QV+    GS  ++ RVV ID L+++P+ G +    DFLD ++ 
Sbjct: 64  KPGQRVVDLGAAPGGWCQVSVERVGSENDDIRVVGIDFLEVDPVSGAEILLMDFLDDEAP 123

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           + + +A+GG+PD+VLSDMA PTIGHR+ DHLRTM LCE A  FA+  L  GG FL KTFQ
Sbjct: 124 DRLMEALGGSPDIVLSDMAAPTIGHRQTDHLRTMHLCEVAADFAVRTLKPGGHFLCKTFQ 183

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  D+L LLK++F+ V HVKP ASR  SVE+++LAK F+
Sbjct: 184 GGTERDLLELLKRNFKAVHHVKPPASRDGSVELYILAKDFK 224


>gi|254720340|ref|ZP_05182151.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp.
           83/13]
 gi|265985356|ref|ZP_06098091.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           83/13]
 gi|306837434|ref|ZP_07470310.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
           2653]
 gi|264663948|gb|EEZ34209.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           83/13]
 gi|306407477|gb|EFM63680.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
           2653]
          Length = 240

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 114/217 (52%), Positives = 162/217 (74%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  +
Sbjct: 23  NLHVRVKKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQ 82

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + + 
Sbjct: 83  KIIDLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLM 142

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT 
Sbjct: 143 DALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTE 202

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 203 NELLALLKQRFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|189044091|sp|A5VUZ8|RLME_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 240

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 114/217 (52%), Positives = 162/217 (74%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  +
Sbjct: 23  NLHVRVKKKAGTTKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQ 82

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + + 
Sbjct: 83  KIIDLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLM 142

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT 
Sbjct: 143 DALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTE 202

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 203 NELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|17988942|ref|NP_541575.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|161620740|ref|YP_001594626.1| ribosomal RNA large subunit methyltransferase J [Brucella canis
           ATCC 23365]
 gi|163844815|ref|YP_001622470.1| hypothetical protein BSUIS_B0670 [Brucella suis ATCC 23445]
 gi|189022722|ref|YP_001932463.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
 gi|225629167|ref|ZP_03787200.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
           Cudo]
 gi|225686460|ref|YP_002734432.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis ATCC 23457]
 gi|237817019|ref|ZP_04596011.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           str. 2308 A]
 gi|254690965|ref|ZP_05154219.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 6 str. 870]
 gi|254695724|ref|ZP_05157552.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698749|ref|ZP_05160577.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699910|ref|ZP_05161738.1| Ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           5 str. 513]
 gi|254703032|ref|ZP_05164860.1| Ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           3 str. 686]
 gi|254711054|ref|ZP_05172865.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis B2/94]
 gi|254732193|ref|ZP_05190771.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 4 str. 292]
 gi|256029435|ref|ZP_05443049.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M292/94/1]
 gi|256043568|ref|ZP_05446495.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256111394|ref|ZP_05452420.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 3 str. Ether]
 gi|256157632|ref|ZP_05455550.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M490/95/1]
 gi|256253393|ref|ZP_05458929.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           B1/94]
 gi|256256150|ref|ZP_05461686.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 9 str. C68]
 gi|256262400|ref|ZP_05464932.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260544705|ref|ZP_05820526.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           NCTC 8038]
 gi|260564762|ref|ZP_05835247.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568039|ref|ZP_05838508.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           4 str. 40]
 gi|260756558|ref|ZP_05868906.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759989|ref|ZP_05872337.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260763229|ref|ZP_05875561.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882376|ref|ZP_05893990.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 9 str. C68]
 gi|261216133|ref|ZP_05930414.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261220515|ref|ZP_05934796.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           B1/94]
 gi|261318645|ref|ZP_05957842.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis B2/94]
 gi|261750386|ref|ZP_05994095.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           5 str. 513]
 gi|261753643|ref|ZP_05997352.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           3 str. 686]
 gi|261756885|ref|ZP_06000594.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           F5/99]
 gi|265986444|ref|ZP_06099001.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M292/94/1]
 gi|265989986|ref|ZP_06102543.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265992903|ref|ZP_06105460.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 3 str. Ether]
 gi|265996137|ref|ZP_06108694.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M490/95/1]
 gi|294853531|ref|ZP_06794203.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
           07-0026]
 gi|297249509|ref|ZP_06933210.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
           5 str. B3196]
 gi|306840657|ref|ZP_07473408.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
 gi|306845790|ref|ZP_07478358.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO1]
 gi|81850447|sp|Q8YCD5|RLME_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305655|sp|Q578H4|RLME_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305656|sp|Q8FVY1|RLME_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459528|sp|Q2YKU4|RLME_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044087|sp|A9MBW8|RLME_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044088|sp|A9WYY2|RLME_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703283|sp|B2SAY0|RLME_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809548|sp|C0RLJ5|RLME_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|17984775|gb|AAL53839.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|161337551|gb|ABX63855.1| Ribosomal RNA large subunit methyltransferase J [Brucella canis
           ATCC 23365]
 gi|163675538|gb|ABY39648.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021296|gb|ACD74017.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
 gi|225615663|gb|EEH12712.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
           Cudo]
 gi|225642565|gb|ACO02478.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis ATCC 23457]
 gi|237787832|gb|EEP62048.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
           str. 2308 A]
 gi|260097976|gb|EEW81850.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           NCTC 8038]
 gi|260152405|gb|EEW87498.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. 16M]
 gi|260154704|gb|EEW89785.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           4 str. 40]
 gi|260670307|gb|EEX57247.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260673650|gb|EEX60471.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676666|gb|EEX63487.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260871904|gb|EEX78973.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 9 str. C68]
 gi|260917740|gb|EEX84601.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260919099|gb|EEX85752.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           B1/94]
 gi|261297868|gb|EEY01365.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis B2/94]
 gi|261736869|gb|EEY24865.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
           F5/99]
 gi|261740139|gb|EEY28065.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           5 str. 513]
 gi|261743396|gb|EEY31322.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
           3 str. 686]
 gi|262550434|gb|EEZ06595.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M490/95/1]
 gi|262763773|gb|EEZ09805.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 3 str. Ether]
 gi|263000655|gb|EEZ13345.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092133|gb|EEZ16430.1| ribosomal RNA large subunit methyltransferase J [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264658641|gb|EEZ28902.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M292/94/1]
 gi|294819186|gb|EFG36186.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
           07-0026]
 gi|297173378|gb|EFH32742.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
           5 str. B3196]
 gi|306273682|gb|EFM55520.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO1]
 gi|306289350|gb|EFM60589.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
 gi|326410838|gb|ADZ67902.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M28]
 gi|326554129|gb|ADZ88768.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M5-90]
          Length = 240

 Score =  287 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/217 (52%), Positives = 162/217 (74%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  +
Sbjct: 23  NLHVRVKKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQ 82

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + + 
Sbjct: 83  KIIDLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLM 142

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT 
Sbjct: 143 DALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTE 202

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 203 NELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|148558273|ref|YP_001257653.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
           ovis ATCC 25840]
 gi|148369558|gb|ABQ62430.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
           ovis ATCC 25840]
          Length = 215

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/214 (52%), Positives = 160/214 (74%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+
Sbjct: 1   MRVKKKAGTTKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKII 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+
Sbjct: 61  DLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDAL 120

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++
Sbjct: 121 GDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENEL 180

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 181 LALLKQKFRSVHHVKPPASRAESVELYLLARDFK 214


>gi|260466890|ref|ZP_05813074.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
           opportunistum WSM2075]
 gi|259029392|gb|EEW30684.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
           opportunistum WSM2075]
          Length = 236

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/230 (52%), Positives = 166/230 (72%), Gaps = 4/230 (1%)

Query: 1   MVKPP---GSSSRRGLTQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K P   GS+S R L  ++K +S  + SSR WL RHINDPYVQR++ +G+R+R+AYKL+
Sbjct: 1   MTKKPEKPGSASIRVLKTRIKKKSGLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLI 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I++KH +L+   +++DLG++PG W QVAA  T S A N  V+ ID L+M+ + G     
Sbjct: 61  EIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTAENPHVIGIDYLEMDAVPGAPVLL 120

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DFL+  + + + +A+GG+PD+VLSDMA PT GH++ DH+RTM LCE A  FAL +L  G
Sbjct: 121 MDFLNPAAPQKLAEALGGDPDVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPG 180

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G FL KTFQGG  N++L +LKK+F+ V HVKP ASR ESVE++LLAK F+
Sbjct: 181 GHFLAKTFQGGAENELLSMLKKNFRSVHHVKPPASRDESVELYLLAKDFK 230


>gi|23500428|ref|NP_699868.1| ribosomal RNA large subunit methyltransferase J [Brucella suis
           1330]
 gi|62317468|ref|YP_223321.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269449|ref|YP_418740.1| cell division protein FtsJ [Brucella melitensis biovar Abortus
           2308]
 gi|256015456|ref|YP_003105465.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
           CCM 4915]
 gi|260167472|ref|ZP_05754283.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp.
           F5/99]
 gi|23464051|gb|AAN33873.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
           suis 1330]
 gi|62197661|gb|AAX75960.1| hypothetical ribosomal RNA large subunit methyltransferase J
           [Brucella abortus bv. 1 str. 9-941]
 gi|82939723|emb|CAJ12720.1| Cell division protein FtsJ [Brucella melitensis biovar Abortus
           2308]
 gi|255998116|gb|ACU49803.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
           CCM 4915]
          Length = 215

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/214 (52%), Positives = 160/214 (74%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  K K  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  ++I+
Sbjct: 1   MRVKKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKII 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + +  A+
Sbjct: 61  DLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLMDAL 120

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT N++
Sbjct: 121 GDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENEL 180

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 181 LALLKQKFRSVHHVKPPASRAESVELYLLARDFK 214


>gi|154244787|ref|YP_001415745.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xanthobacter
           autotrophicus Py2]
 gi|226705323|sp|A7IDJ5|RLME_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|154158872|gb|ABS66088.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xanthobacter
           autotrophicus Py2]
          Length = 254

 Score =  286 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/227 (49%), Positives = 150/227 (66%), Gaps = 1/227 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M  PP     R L  +VK  R    SS+ WL R +NDPYV RA+ EGWR+R+A+KL++++
Sbjct: 1   MTTPPRGPDGRPLKVRVKKSRGRTTSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           EK ++L+   RIVDLG++PG WSQVAA+  G      ++VAID+L++EPI GV F + DF
Sbjct: 61  EKARLLKRGMRIVDLGAAPGGWSQVAAKKIGLEEGLGKIVAIDLLEIEPIPGVAFAQMDF 120

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L  D+ E +   +GG  DLV+SDMA    GH+K DHLR + L E A  FA ++L  GG F
Sbjct: 121 LAPDAPERLIAMLGGQADLVMSDMAANATGHKKTDHLRIVGLVELAVEFARQVLAPGGTF 180

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K  QGG    +L  LK+ F +V HVKP ASRA+S E+++LA GFR
Sbjct: 181 LAKVIQGGMEATLLADLKRDFTQVRHVKPAASRADSAELYVLATGFR 227


>gi|153011133|ref|YP_001372347.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
           ATCC 49188]
 gi|189040317|sp|A6X5L4|RLME_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|151563021|gb|ABS16518.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
           ATCC 49188]
          Length = 240

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 113/221 (51%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 8   SSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           +    L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L
Sbjct: 19  AGSSNLQVRVKKKAGTIKESSRRWLQRHLNDPYVHKSRQDGYRSRAAYKLIEINDRYDLL 78

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  ++I+DLG++PG WSQ+AA+I GS   N  VV ID L ++P+ GV   + DFLD ++ 
Sbjct: 79  KKGQKIIDLGAAPGGWSQIAAKIVGSTDENPHVVGIDYLHVDPLPGVVLLEMDFLDDEAP 138

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           + +  A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQ
Sbjct: 139 QKLMDALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQ 198

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 199 GGTENELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|256059126|ref|ZP_05449335.1| Ribosomal RNA large subunit methyltransferase J [Brucella neotomae
           5K33]
 gi|261323077|ref|ZP_05962274.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
           5K33]
 gi|261299057|gb|EEY02554.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
           5K33]
          Length = 240

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/217 (52%), Positives = 162/217 (74%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  +
Sbjct: 23  NLHVRVKKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQ 82

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + + 
Sbjct: 83  KIIDLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLM 142

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT 
Sbjct: 143 DALGDKPDLVISDMAAPTAGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTE 202

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 203 NELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|288958935|ref|YP_003449276.1| cell division protein methyltransferase [Azospirillum sp. B510]
 gi|288911243|dbj|BAI72732.1| cell division protein methyltransferase [Azospirillum sp. B510]
          Length = 235

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 143/224 (63%), Gaps = 1/224 (0%)

Query: 4   PPGSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           P      R  T +VK    +  SS+ WL RH+NDPYV  A   G+R+R+A+KLLQ++EK 
Sbjct: 6   PSTRPGGRRATVRVKTAGKRTESSKRWLERHLNDPYVAEATKRGYRSRAAFKLLQLDEKF 65

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
           ++L   +R+VDLG++PG W+Q+A           +VV +DIL M+P+ G    + DFL+ 
Sbjct: 66  RLLGPGKRVVDLGAAPGGWTQIAVEKVQVAREGWKVVGLDILPMDPVPGATTMQADFLEE 125

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + + +++A+GG  DLVLSDMA PT GH++ DHLR M L EAA  FA E+L  GG F+ K
Sbjct: 126 GAADRLKEALGGPADLVLSDMAAPTTGHQQTDHLRIMGLAEAAYDFAEEVLAPGGAFVAK 185

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FQGG    +L  L++ F  V H KP ASRAES E +++A GFR
Sbjct: 186 LFQGGAERSLLDRLRRDFAVVKHAKPPASRAESSETYVVATGFR 229


>gi|163867451|ref|YP_001608650.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
 gi|189044086|sp|A9IMA1|RLME_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|161017097|emb|CAK00655.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
          Length = 242

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 162/231 (70%), Gaps = 6/231 (2%)

Query: 2   VKPP----GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKL 55
            KPP    G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL
Sbjct: 5   TKPPTGGYGGSGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKL 64

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
           ++INE+++ L+  ++++DLG++PG W QVA RI GS+     VV ID L ++P+  V   
Sbjct: 65  IEINERYKFLKKGQKVIDLGAAPGGWCQVAERIVGSSNEKPSVVGIDYLHVDPLPRVAML 124

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + DFL  D+ + + + +G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  
Sbjct: 125 EMDFLHADAPQKLIETLGTKPDVVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKP 184

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG FL K FQGG  N +L +LK+HF+KV HVKP ASR+ESVE++LLA  F+
Sbjct: 185 GGHFLAKAFQGGAENTLLAILKQHFKKVYHVKPPASRSESVELYLLALEFK 235


>gi|83312878|ref|YP_423142.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|123540815|sp|Q2W0P2|RLME_MAGSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|82947719|dbj|BAE52583.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 244

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/223 (45%), Positives = 143/223 (64%), Gaps = 3/223 (1%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           +   R LT KVK  +  + SS  WL R +NDPYV  A+  G+R+R+A+K++Q++E+  IL
Sbjct: 18  AGGSRNLTVKVKTAKRRKLSSTLWLQRQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHIL 77

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +   R+VDLG++PG W+QVA    G+       +VV +DIL+ +P+ G    + DFL  D
Sbjct: 78  KPGLRVVDLGAAPGGWTQVAVEKVGALKPKGGGKVVGMDILEWDPLPGAITLQGDFLADD 137

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +++A+GG  D+VLSDMA PT GH   DHLR + L E A  FALE+L  GG F+ K 
Sbjct: 138 APDRLKEALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKV 197

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGGT   +L  LKK+F  V H KP ASR  S E +++A GFR
Sbjct: 198 FQGGTEKTLLDQLKKNFTTVRHAKPPASRQGSAETYVVATGFR 240


>gi|319404629|emb|CBI78235.1| cell division protein ftsJ [Bartonella rochalimae ATCC BAA-1498]
          Length = 240

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/216 (51%), Positives = 155/216 (71%), Gaps = 2/216 (0%)

Query: 13  LTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  ++
Sbjct: 18  LYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQK 77

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           I+DLG++PG W QVAAR   S+     VV ID L M+P+ GV   + DFL  ++ + +  
Sbjct: 78  IIDLGAAPGGWCQVAARKVESSDQKPSVVGIDYLPMDPLPGVVILEMDFLHENAPQKLMN 137

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K FQGG  N
Sbjct: 138 ALGEQPDIVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKAFQGGAEN 197

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 198 TLLTTLKQNFKTVHHVKPPASRAESVELYLLALEFK 233


>gi|254712483|ref|ZP_05174294.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M644/93/1]
 gi|254715556|ref|ZP_05177367.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M13/05/1]
 gi|261217293|ref|ZP_05931574.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M13/05/1]
 gi|261320164|ref|ZP_05959361.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M644/93/1]
 gi|260922382|gb|EEX88950.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M13/05/1]
 gi|261292854|gb|EEX96350.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
           M644/93/1]
          Length = 240

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/217 (51%), Positives = 161/217 (74%), Gaps = 2/217 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  +
Sbjct: 23  NLHVRVKKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQ 82

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + + 
Sbjct: 83  KIIDLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLM 142

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PDLV+SDMA PT GHR+ DHLRT+ +CE    FA+ +L  GG FL KTFQGGT 
Sbjct: 143 DALGDKPDLVISDMAAPTTGHRRTDHLRTVHVCEVVADFAVSVLKPGGHFLTKTFQGGTE 202

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++L LLK+ F+ V HVKP ASRAESVE++LLA+ F+
Sbjct: 203 NELLALLKQKFRSVHHVKPPASRAESVELYLLARDFK 239


>gi|154251621|ref|YP_001412445.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Parvibaculum
           lavamentivorans DS-1]
 gi|189040318|sp|A7HSA5|RLME_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|154155571|gb|ABS62788.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Parvibaculum
           lavamentivorans DS-1]
          Length = 254

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 148/224 (66%), Gaps = 8/224 (3%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R L  +VK  R    SS  WL R +NDPYV  A+ EG+R+R+A+KL +I++K++ L+   
Sbjct: 20  RALKVRVKTARKRSNSSTRWLQRQLNDPYVHAAKREGYRSRAAFKLAEIDDKYRFLKPGG 79

Query: 70  RIVDLGSSPGSWSQVAARIT-------GSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
           R+VDLG +PG W QVA           G+   + RV+ +D L+M+P+ G    + DFL  
Sbjct: 80  RVVDLGCAPGGWCQVAVARVKAEGGDAGAEGRHGRVIGLDYLEMDPVPGATILQLDFLSE 139

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + + +++ + G  D+VLSDMA PT GH++ DH+R MSLCE A  FA E+L  GG FL K
Sbjct: 140 GADDQVKELLAGEADVVLSDMAAPTTGHKQTDHMRIMSLCEIAAHFATEVLAPGGTFLAK 199

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +GGT N++L LLK+HF+ V HVKP ASRA+S EM++LA+GF+
Sbjct: 200 VLRGGTENELLVLLKQHFKTVRHVKPKASRADSAEMYVLAQGFK 243


>gi|110632831|ref|YP_673039.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium sp. BNC1]
 gi|123162804|sp|Q11L51|RLME_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110283815|gb|ABG61874.1| 23S rRNA Um-2552 2'-O-methyltransferase [Chelativorans sp. BNC1]
          Length = 235

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 119/228 (52%), Positives = 159/228 (69%), Gaps = 2/228 (0%)

Query: 1   MVK-PPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K     S  R L  +VK  R  + SSR WL RH+NDPYV+RA  EG R+R+AYKL++I
Sbjct: 1   MTKEKKAGSGTRVLKTRVKKKRGLKSSSRRWLERHLNDPYVRRANSEGMRSRAAYKLIEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           ++KH IL    +++DLG++PG W QVAA    S+     VV ID L+M+P+ G    + D
Sbjct: 61  DDKHHILAPGMKVIDLGAAPGGWCQVAAASVKSDPAKPSVVGIDYLEMDPVPGAAVLQMD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + + + + +GG+PD+VLSDMA PT GHR+ DHLRTM LCEAA  FA+ +L  GG+
Sbjct: 121 FLDDAAPDRLIEVLGGSPDVVLSDMAAPTTGHRRTDHLRTMQLCEAAADFAISVLKTGGN 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L LLK++F+ V HVKP ASR ESVE+++LAK F+
Sbjct: 181 FLAKTFQGGTEGELLSLLKRNFRSVHHVKPPASRDESVELYILAKDFK 228


>gi|90420028|ref|ZP_01227937.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336069|gb|EAS49817.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 255

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/222 (51%), Positives = 156/222 (70%), Gaps = 1/222 (0%)

Query: 6   GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           G S  RG+T KVK  R  + SSR WL R +NDPYV+RA+ +G+R+R+AYKL+++++++++
Sbjct: 4   GRSDSRGMTVKVKKKRGLKLSSRRWLERQLNDPYVRRAKADGYRSRAAYKLIEMDDRYKL 63

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+   RIVDLG++PG W QVA   TGS A + RVV ID L +EP+ G      DFLD  +
Sbjct: 64  LKPGHRIVDLGAAPGGWCQVAVDRTGSTAADVRVVGIDYLTVEPVAGATILLMDFLDDAA 123

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            + + + +G  PD+VLSD+A PT GHR  DH+RTM LC+ A  FA+  L  GG FL KTF
Sbjct: 124 PDKLMETLGEAPDIVLSDLAAPTTGHRPTDHIRTMHLCDVAADFAIRTLKPGGHFLAKTF 183

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           QGGT  ++L LLK+HF  V HVKP ASR  SVE+++LAK F+
Sbjct: 184 QGGTERELLTLLKRHFVSVHHVKPPASREGSVELYILAKSFK 225


>gi|240849823|ref|YP_002971211.1| cell division protein FtsJ [Bartonella grahamii as4aup]
 gi|240266946|gb|ACS50534.1| cell division protein FtsJ [Bartonella grahamii as4aup]
          Length = 242

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/231 (49%), Positives = 162/231 (70%), Gaps = 6/231 (2%)

Query: 2   VKPP----GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKL 55
            K P    G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL
Sbjct: 5   TKTPRGGYGGSGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKL 64

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
           ++INE+++ L+  ++++DLG++PG W QVA RI GS+  +  VV ID L ++P+  V   
Sbjct: 65  IEINERYRFLKKGQKVIDLGAAPGGWCQVAERIVGSSDEDPSVVGIDYLHVDPLPRVAML 124

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + DFL  D+ + + + +G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  
Sbjct: 125 EMDFLHTDAPQKLIETLGTKPDVVLSDMASPTTGHRQTDHLRTIYLCEVAADFALSVLKP 184

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG FL K FQGG  N +L +LK+HF+KV HVKP ASR+ESVE++LLA  F+
Sbjct: 185 GGHFLAKAFQGGAENTLLTILKQHFKKVYHVKPPASRSESVELYLLALEFK 235


>gi|319408132|emb|CBI81785.1| cell division protein ftsJ [Bartonella schoenbuchensis R1]
          Length = 241

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 161/224 (71%), Gaps = 2/224 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G +    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL++INE+++
Sbjct: 13  GGAGSHELYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           IL+  ++I+DLG++PG W QVAARI GSN     VV ID L ++P+ GV   + DF   +
Sbjct: 73  ILKKGQKIIDLGAAPGGWCQVAARIVGSNDQRPSVVGIDYLHVDPLPGVVMLEMDFFHEN 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE+A  FA+ +L  GG FL KT
Sbjct: 133 APQQLISALGAKPDVVLSDMAAPTTGHRQTDHLRTVYLCESAADFAISVLKPGGHFLAKT 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           FQGG  N +L  LK++F+ + HVKP ASRAESVE++L+A   ++
Sbjct: 193 FQGGAENALLTKLKQNFKTIHHVKPPASRAESVELYLVALKLKE 236


>gi|46200783|ref|ZP_00207841.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/218 (46%), Positives = 141/218 (64%), Gaps = 3/218 (1%)

Query: 12  GLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
            LT KVK  +  + SS  WL R +NDPYV  A+  G+R+R+A+KL+Q++E+  IL+   R
Sbjct: 23  NLTVKVKTAKRRKLSSTLWLQRQLNDPYVHEAKRLGFRSRAAFKLIQLDERFHILKPGLR 82

Query: 71  IVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           +VDLG++PG W+QVA    G+       +VV +DIL+ +P+ G    + DFL  D+ + +
Sbjct: 83  VVDLGAAPGGWTQVAVDKVGALRPKGGGKVVGMDILEWDPLPGAITLQGDFLADDAPDRL 142

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           ++A+GG  D+VLSDMA PT GH   DHLR + L E A  FALE+L  GG F+ K FQGGT
Sbjct: 143 KEALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGT 202

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +L  LK++F  V H KP ASR  S E +++A GFR
Sbjct: 203 EKTLLDQLKRNFTTVRHAKPPASRQGSAETYVVATGFR 240


>gi|118589174|ref|ZP_01546581.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
 gi|118438503|gb|EAV45137.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
          Length = 235

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 110/228 (48%), Positives = 154/228 (67%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M +    +  RGL  KVK     + SS  WL R +NDPYV+RA+++G+R+R+AYKL++I+
Sbjct: 1   MSQGKKGTGDRGLHVKVKTSAGRRESSTRWLQRQLNDPYVRRAKMDGYRSRAAYKLIEID 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +KH++L+   R+VDLG +PG W QVA +   S+ +  +VV ID L+M+ + G  F + DF
Sbjct: 61  DKHKLLKPGYRVVDLGCAPGGWCQVAVQRVQSSVDAPKVVGIDYLEMDHVRGTTFLQKDF 120

Query: 120 LDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           LD D+   + +A+GG  PD+VLSDMA PT GH++ DHLRT  L E A  FA   L  GG 
Sbjct: 121 LDDDAPAALMEALGGHKPDVVLSDMAAPTTGHKQTDHLRTTHLFEIAIDFARRNLVPGGS 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL K F+GGT N +L  LK+ F+ V H+KP ASR ES E++++AKGFR
Sbjct: 181 FLAKVFRGGTENALLHDLKREFKSVAHIKPPASRKESPELYVIAKGFR 228


>gi|254473353|ref|ZP_05086750.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
 gi|211957469|gb|EEA92672.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
          Length = 233

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 118/222 (53%), Positives = 156/222 (70%), Gaps = 2/222 (0%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
            S  RG+ Q+VK  R    SS  WL R +NDPYV+RA+++G+R+R+AYKL++INEKH+IL
Sbjct: 9   GSGDRGMFQRVKTARKRSNSSTLWLQRQLNDPYVRRAKVDGYRSRAAYKLIEINEKHEIL 68

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   R+VDLG +PG WSQ+ A I GS  ++  VV ID L++EPI GV   + DFLD D+ 
Sbjct: 69  KPGMRVVDLGCAPGGWSQLTAPIVGSTDDDPLVVGIDYLEVEPIPGVVILQKDFLDDDAP 128

Query: 126 EFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           + + +A+GG+ PDLV+SDMA PT GHR+ DHLRT  L E A  FA + LN GG FL K F
Sbjct: 129 DELMKALGGHRPDLVMSDMAAPTTGHRQTDHLRTTYLFEIAIDFARQNLNEGGTFLSKVF 188

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG    +L  LKK F+ V+H+KP ASR  S EMF+LA+G+R
Sbjct: 189 AGGAEASLLQDLKKEFKSVVHIKPPASRKGSPEMFILARGYR 230


>gi|298290958|ref|YP_003692897.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
           506]
 gi|296927469|gb|ADH88278.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
           506]
          Length = 236

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/230 (46%), Positives = 155/230 (67%), Gaps = 4/230 (1%)

Query: 1   MVKPPGSSSR---RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M+  P        R L  ++K  RS   SS+ WL R +NDPYV RA+ EGWR+R+A+KLL
Sbjct: 1   MIDKPQPRKGGEARPLKVRLKKARSLSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I++K ++L+   R+VDLG++PG WSQVAA+   +     +VVAID+L+++PI  V F +
Sbjct: 61  EIDDKLKLLKPGLRVVDLGAAPGGWSQVAAQRVKATEGRGKVVAIDLLEIDPIPAVDFAQ 120

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DFL  ++ + +++ +GG  D+VLSDMA  T GHR  DHLR + L E A  FA ++L+ G
Sbjct: 121 LDFLKDEAPDRLKEMLGGEADVVLSDMAANTTGHRATDHLRIVGLVELAIDFARQVLSPG 180

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K FQGGT N +L  LK+ F  V H+KP ASRA+S E++++A GFR
Sbjct: 181 GAFVAKVFQGGTENTLLAELKRDFTTVRHIKPQASRADSAELYVVATGFR 230


>gi|319407620|emb|CBI81272.1| cell division protein ftsJ [Bartonella sp. 1-1C]
          Length = 240

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/218 (51%), Positives = 154/218 (70%), Gaps = 2/218 (0%)

Query: 11  RGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
             L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  
Sbjct: 16  HALYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKG 75

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           ++I+DLG++PG W QVAAR   S+     VV ID L M+P+ GV   + DFL  ++   +
Sbjct: 76  QKIIDLGAAPGGWCQVAARKVESSNQKPSVVGIDYLPMDPLPGVVVLEMDFLHENAPRKL 135

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             A+G  PD+VLSDMA PT GHRK DHLRT+ LCE A  FAL +L  GG FL K FQGG 
Sbjct: 136 MNALGEQPDIVLSDMAAPTTGHRKTDHLRTVYLCEMAADFALSVLKSGGHFLAKAFQGGA 195

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            N +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 196 ENTLLTTLKQNFKTVHHVKPPASRAESVELYLLALEFK 233


>gi|319899272|ref|YP_004159365.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
 gi|319403236|emb|CBI76795.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
          Length = 238

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/218 (50%), Positives = 153/218 (70%), Gaps = 2/218 (0%)

Query: 11  RGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
             L Q+VK R  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  
Sbjct: 16  HALYQRVKKRAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKG 75

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           ++I+DLG++PG W QVAA    S+     VV ID L M+P+ GV   + DFL  ++ + +
Sbjct: 76  QKIIDLGAAPGGWCQVAAHKVESSDQKPSVVGIDYLPMDPLPGVVVLEMDFLHENAPQKL 135

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL  L  GG FL K FQGG 
Sbjct: 136 MNALGEQPDIVLSDMAAPTTGHRQTDHLRTVYLCEMAADFALSFLKSGGHFLAKAFQGGA 195

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            N +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 196 ENILLTKLKQNFKTVHHVKPPASRAESVELYLLALEFK 233


>gi|121602887|ref|YP_988636.1| ribosomal RNA large subunit methyltransferase J [Bartonella
           bacilliformis KC583]
 gi|143459401|sp|A1URN3|RLME_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120615064|gb|ABM45665.1| ribosomal RNA large subunit methyltransferase J [Bartonella
           bacilliformis KC583]
          Length = 239

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 113/216 (52%), Positives = 158/216 (73%), Gaps = 2/216 (0%)

Query: 13  LTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           L Q+VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++INE+++IL+  ++
Sbjct: 20  LYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKADGYRSRAAYKLIEINERYKILKKGQK 79

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           I+DLG++PG W QVAAR+  S   N  VV ID L MEP+ GV   + DF   D+ + +  
Sbjct: 80  IIDLGAAPGGWCQVAARLVESKDYNPSVVGIDYLHMEPLPGVAILEMDFFHEDAPQELIS 139

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
            +G  PD+VLSDMA PT GHR+ DHLRT++LCEAA  F++ +L  GG FL KTFQGG   
Sbjct: 140 TLGSKPDVVLSDMAAPTTGHRQTDHLRTIALCEAAVHFSISVLKPGGHFLTKTFQGGAEG 199

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++L  LK++F+KV HVKP ASRAESVE++LLA  F+
Sbjct: 200 NLLATLKQNFKKVHHVKPPASRAESVELYLLALQFK 235


>gi|49474969|ref|YP_033010.1| cell division protein ftsJ [Bartonella henselae str. Houston-1]
 gi|81648296|sp|Q6G4Z3|RLME_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49237774|emb|CAF26967.1| Cell division protein ftsJ [Bartonella henselae str. Houston-1]
          Length = 247

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/223 (49%), Positives = 156/223 (69%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  +   SSR WL RH+NDPYV +++++G+R+R+AYKL++IN++++
Sbjct: 13  GGSGSHKLYQRVKKKAGTITASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINQRYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++I+DLG++PG W QV+  I GS+     VV ID L ++P+ GV   + DFL  D
Sbjct: 73  FLKKGQKIIDLGAAPGGWCQVSGCIVGSSDEKPSVVGIDYLHVDPLPGVVMLEMDFLHSD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ DHLRT+ LCE A  FAL +L  GG FL K 
Sbjct: 133 APQKLIDALGTKPDVVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L  LK++F+ V HVKP ASR+ESVE++LLA  F+
Sbjct: 193 FQGGAENTLLTTLKQNFKTVHHVKPPASRSESVELYLLALEFK 235


>gi|296534248|ref|ZP_06896731.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
           cervicalis ATCC 49957]
 gi|296265422|gb|EFH11564.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
           cervicalis ATCC 49957]
          Length = 228

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 96/227 (42%), Positives = 147/227 (64%), Gaps = 6/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M  P  + + RGLT +++  +    +S+ WL R +NDPYV+ A+  GWR+R+A+KL++++
Sbjct: 1   MKSP--TEAGRGLTTRLRTAKGRTTASQRWLERQLNDPYVRAAKAAGWRSRAAFKLIELD 58

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           EK+++L+  +RIVDLG++PG W+QVA +  G   +  +VV +D+L M+ I G    + DF
Sbjct: 59  EKYKLLKPGQRIVDLGAAPGGWTQVAVQRAG---DRGKVVGLDLLPMDVIAGATLLQGDF 115

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            D    + +  A+ G  DLV+SDMA  T GH   DHLR + L E A  FA ++L  GG F
Sbjct: 116 QDEAVEQAVLDALDGPADLVMSDMAPNTTGHNATDHLRILGLVELALDFADKVLVPGGAF 175

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQGGT  ++L  LK+ +  V H KP ASR +S EM+++A+G+R
Sbjct: 176 IAKVFQGGTEREMLNRLKRDYATVRHAKPPASRKDSAEMYVVAQGYR 222


>gi|220921508|ref|YP_002496809.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           nodulans ORS 2060]
 gi|219946114|gb|ACL56506.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           nodulans ORS 2060]
          Length = 255

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 148/231 (64%), Gaps = 5/231 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M    G   R  L Q+V+  R    SS+ WL R +NDPYV RA+ EG+R+R+AYKLL+I+
Sbjct: 1   MSDRRGGGPRGDLKQRVRTARGRTVSSKRWLERQLNDPYVARAKREGYRSRAAYKLLEID 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA----NNTRVVAIDILDMEPILGVKFF 115
           E+  +L+   R+VDLG++PG WSQVAA   GS+        RVV ID+L++EP+ GV F 
Sbjct: 61  ERFHLLKPGYRVVDLGAAPGGWSQVAAAKVGSHPGAPKPRGRVVGIDLLEIEPLPGVDFI 120

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             DFLD  +   + + +GG  DLV+SDMA    GH+K DHLR M L E A  FA E+L  
Sbjct: 121 TLDFLDATAPARLIELLGGPADLVMSDMAANATGHKKTDHLRIMGLAETAAAFAREVLAP 180

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG +L K  QGGT   +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 181 GGAYLAKVLQGGTEGTLLADLKRDFSAVRHVKPAASRADSSELYVLATGFR 231


>gi|307947081|ref|ZP_07662416.1| ribosomal RNA large subunit methyltransferase J [Roseibium sp.
           TrichSKD4]
 gi|307770745|gb|EFO29971.1| ribosomal RNA large subunit methyltransferase J [Roseibium sp.
           TrichSKD4]
          Length = 231

 Score =  277 bits (708), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 116/228 (50%), Positives = 153/228 (67%), Gaps = 2/228 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M +    S  RGL  +VK     + SS  WL R +NDPYV+RA+ +G+R+R+AYKLL+I+
Sbjct: 1   MSRGKKGSGDRGLHVRVKTSAGRRESSTRWLERQLNDPYVRRAKADGYRSRAAYKLLEID 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           EKH++L+   R+VDLG++PG W QVA     S  +  +VV ID LDM+ + G+ F K DF
Sbjct: 61  EKHRLLKPGYRVVDLGAAPGGWCQVAVDKVKSTEDAPKVVGIDYLDMDYLPGLAFLKKDF 120

Query: 120 LDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           LD D+ E +  A+GG  PDLVLSDMA  T GHR+ DHLRT  L E A  FA + L  GG 
Sbjct: 121 LDDDAPEALMNALGGGLPDLVLSDMAARTTGHRQTDHLRTTHLFEVAVDFARQNLVPGGS 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL K F+GGT N +L  +K+ F+ V HVKP ASR ES E++++AKGFR
Sbjct: 181 FLAKVFRGGTENQLLTEMKRDFKSVAHVKPPASRKESPELYVIAKGFR 228


>gi|254705826|ref|ZP_05167654.1| Ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M163/99/10]
 gi|261313253|ref|ZP_05952450.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M163/99/10]
 gi|261302279|gb|EEY05776.1| ribosomal RNA large subunit methyltransferase J [Brucella
           pinnipedialis M163/99/10]
          Length = 232

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/210 (52%), Positives = 156/210 (74%), Gaps = 2/210 (0%)

Query: 12  GLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
            L  +VK +  + + SSR WL RH+NDPYV +++ +G+R+R+AYKL++IN+++ +L+  +
Sbjct: 23  NLHVRVKKKAGTIKESSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQ 82

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           +I+DLG++PG WSQ+AARI GS   N +VV ID L ++P+ GV   + DFLD ++ + + 
Sbjct: 83  KIIDLGAAPGGWSQIAARIVGSTDENPQVVGIDYLHVDPLPGVILLEMDFLDDEAPQKLM 142

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            A+G  PDLV+SDMA PT GHR+ DHLRT+ LCE A  FA+ +L  GG FL KTFQGGT 
Sbjct: 143 DALGDKPDLVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTE 202

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           N++L LLK+ F+ V HVKP ASRAESVE++
Sbjct: 203 NELLALLKQKFRSVHHVKPPASRAESVELY 232


>gi|49473815|ref|YP_031857.1| cell division protein ftsJ [Bartonella quintana str. Toulouse]
 gi|81647276|sp|Q6G0S9|RLME_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49239318|emb|CAF25648.1| Cell division protein ftsJ [Bartonella quintana str. Toulouse]
          Length = 241

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/223 (50%), Positives = 156/223 (69%), Gaps = 2/223 (0%)

Query: 6   GSSSRRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           G S    L Q+VK +  + + SSR WL RH+NDPYV +++++G+R+R+AYKL+++NE+++
Sbjct: 13  GGSGSHKLYQRVKKKAGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEMNERYK 72

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L+  ++I+DLG++PG W QVA RI GS+     VV ID L + P+ GV   + DFL  D
Sbjct: 73  FLKKGQKIIDLGAAPGGWCQVAQRIVGSSDEKPSVVGIDYLPVVPLPGVIMLEMDFLHTD 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + + +  A+G  PD+VLSDMA PT GHR+ D+LRT  LCE A  FAL +L  GG FLVK 
Sbjct: 133 APQKLIDALGTKPDVVLSDMAAPTTGHRQTDYLRTTYLCEVAADFALSVLKSGGHFLVKA 192

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG  N +L  LK++F+ V HVKP ASR ESVE++LLA  F+
Sbjct: 193 FQGGAENTLLTTLKQNFKTVHHVKPPASRTESVELYLLALEFK 235


>gi|296445113|ref|ZP_06887073.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
           trichosporium OB3b]
 gi|296257287|gb|EFH04354.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
           trichosporium OB3b]
          Length = 235

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 3/229 (1%)

Query: 1   MVKP--PGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           M K    G    R L  +VK  R    SS  WL R +NDPYV +A+ +G+R+R+AYKLL+
Sbjct: 1   MTKSGASGREGGRSLKTRVKTARKRSLSSTLWLERQLNDPYVAQAKRDGYRSRAAYKLLE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           ++E+  + +  +RI DLG++PG WSQ+AAR  G+     RVV ID+L+MEP+ GV+F   
Sbjct: 61  LDERFHLFRPGQRIADLGAAPGGWSQIAARKVGAGQGKGRVVGIDLLEMEPVQGVEFTVM 120

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D D+ E I++ +GG  D V+SDMA    GH++ DHL+ ++L E A  FA E+L  GG
Sbjct: 121 DFNDADAPERIKEMLGGPADGVMSDMAANATGHKQTDHLKIVALAELAVEFAREVLAPGG 180

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K  QGGT + +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 181 FFVAKVLQGGTEHTLLAELKRDFAVVRHVKPAASRADSAELYVLATGFR 229


>gi|144900076|emb|CAM76940.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 238

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/217 (46%), Positives = 144/217 (66%), Gaps = 4/217 (1%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R L ++VK  R  + SS  WL R +NDPYVQ A+  G+R+R+A+KL++++++  +L+   
Sbjct: 19  RMLVERVKTARGRKPSSTRWLQRQLNDPYVQEARKLGYRSRAAFKLIELDDRFHLLKPGL 78

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG++PG W+QVA +  G+     +VV +DIL+ +P+ G      DFL  DS + ++
Sbjct: 79  RVVDLGAAPGGWTQVAVQRVGARG---KVVGMDILEYDPVPGAICMLGDFLADDSPDRLK 135

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           +A+ G  DLV+SDMA PT GH   DHLR + L E A  FALE+L  GG F+ K FQGGT 
Sbjct: 136 EALDGLADLVVSDMAAPTTGHPPTDHLRIIGLVEVALHFALEVLAPGGTFIAKVFQGGTE 195

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +L LLKK+F  V H KP ASR ES E +++A GF+
Sbjct: 196 KSLLDLLKKNFTTVRHAKPPASRKESAETYVIATGFK 232


>gi|170739001|ref|YP_001767656.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
           4-46]
 gi|168193275|gb|ACA15222.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
           4-46]
          Length = 258

 Score =  276 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 148/231 (64%), Gaps = 5/231 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M    G   R  L Q+VK  R    SS+ WL R +NDPYV RA+ EG+R+R+AYKLL+I+
Sbjct: 1   MSDRRGGGQRGDLKQRVKTGRGRTVSSKRWLERQLNDPYVARAKREGYRSRAAYKLLEID 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA----NNTRVVAIDILDMEPILGVKFF 115
           E+  +L+  +R+VDLG++PG WSQVAA   GS+        RVV ID+L++EP+ GV F 
Sbjct: 61  ERFHLLRPGQRVVDLGAAPGGWSQVAAAKVGSHPGAPPPRGRVVGIDLLEIEPMPGVDFL 120

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             DFLD  +   +   +GG  DLV+SDMA    GH+K DHLR M L E A  FA E+L  
Sbjct: 121 TLDFLDPSAPARLIALLGGPADLVMSDMAANATGHKKTDHLRIMGLAETAAAFAREVLAP 180

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG +L K  QGGT   +L  LK+ F  V HVKP ASRA+S E+++LA G+R
Sbjct: 181 GGAYLAKVLQGGTEGGLLADLKRDFAAVRHVKPAASRADSSELYVLATGYR 231


>gi|158424996|ref|YP_001526288.1| 23S rRNA methylase [Azorhizobium caulinodans ORS 571]
 gi|189044085|sp|A8II77|RLME_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158331885|dbj|BAF89370.1| 23S rRNA methylase [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 154/227 (67%), Gaps = 1/227 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M   P S   R L  +VK+ R+   SS+ WL R +NDPYV RA+ EGWR+R+A+KL++++
Sbjct: 1   MSSSPRSPDARPLKVRVKSARTRSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           EK  +L+   RIVDLG++PG WSQVAA+  G+     ++VAID+L+M+ + GV F + DF
Sbjct: 61  EKLHVLKRGMRIVDLGAAPGGWSQVAAKKIGAAEGQGKIVAIDLLEMDAVTGVMFAQMDF 120

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           LD  + E +   + G  DLV+SDMA  T GH+K DHL+ ++L E A  FA ++L  GG F
Sbjct: 121 LDPTAPERLFAMLDGKADLVMSDMAANTTGHKKTDHLKIIALVELAADFARQVLAPGGAF 180

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQGGT   +L  LK+ + +V H+KP ASRA+S E++L+A GFR
Sbjct: 181 IAKVFQGGTEGTLLADLKRDYAQVRHLKPAASRADSAELYLVATGFR 227


>gi|240140172|ref|YP_002964649.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) [Methylobacterium extorquens AM1]
 gi|254562611|ref|YP_003069706.1| ribosomal RNA large subunit methyltransferase J [Methylobacterium
           extorquens DM4]
 gi|240010146|gb|ACS41372.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) [Methylobacterium extorquens AM1]
 gi|254269889|emb|CAX25867.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) [Methylobacterium extorquens DM4]
          Length = 239

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/214 (52%), Positives = 149/214 (69%), Gaps = 4/214 (1%)

Query: 14  TQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
            Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KLL+I+E+ ++L+  +RIV
Sbjct: 16  KQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIV 75

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQVAARI G +    R+V ID+L++EP+ G  F   DFLD  + E + + +
Sbjct: 76  DLGAAPGGWSQVAARILGESG---RIVGIDLLEIEPMPGATFITLDFLDPSAPERLTELL 132

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  DLVLSDMA  T GH+K DHLR + L E A  FA E+L  GG +L K FQGGT  D+
Sbjct: 133 GGRADLVLSDMAANTTGHKKTDHLRIIGLAETAAVFAREILAPGGAYLAKVFQGGTEGDL 192

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 193 LTELKRDFATVRHVKPQASRADSSELYVLATGFR 226


>gi|218531672|ref|YP_002422488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           chloromethanicum CM4]
 gi|218523975|gb|ACK84560.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           chloromethanicum CM4]
          Length = 239

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/214 (52%), Positives = 149/214 (69%), Gaps = 4/214 (1%)

Query: 14  TQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
            Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KLL+I+E+ ++L+  +RIV
Sbjct: 16  KQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIV 75

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQVAARI G +    R+V ID+L++EP+ G  F   DFLD  + E + + +
Sbjct: 76  DLGAAPGGWSQVAARILGESG---RIVGIDLLEIEPMPGATFITLDFLDPSAPERLTELL 132

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  DLVLSDMA  T GH+K DHLR + L E A  FA E+L  GG +L K FQGGT  D+
Sbjct: 133 GGRADLVLSDMAANTTGHKKTDHLRIIGLAETAAVFAREILAPGGAYLAKVFQGGTEGDL 192

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 193 LTELKRDFATVRHVKPQASRADSSELYVLATGFR 226


>gi|330994695|ref|ZP_08318618.1| Ribosomal RNA large subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
 gi|329758336|gb|EGG74857.1| Ribosomal RNA large subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
          Length = 254

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 138/224 (61%), Gaps = 8/224 (3%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSR---DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           G ++R   T+ V  +  +G +     WL R +NDPYVQ AQ +GWR+R+A+KL++++++ 
Sbjct: 29  GQAARTNRTKTVTVKKARGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRF 88

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
            +++   R+VDLG++PG W+QVA +   +      VV +D+L ++P+ G    + DF D 
Sbjct: 89  HLIRPGTRVVDLGAAPGGWTQVAVKRGAAE-----VVGVDLLPVDPVPGATVIEGDFNDP 143

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           D  + +   +GG  DLV+SDMA  T GH   DHLR + L E A  FA  +L   G F+ K
Sbjct: 144 DMPDRLTGLLGGRADLVMSDMAPNTTGHAPTDHLRIIGLAELALHFATRILAPDGAFVAK 203

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FQGG+   +L  LK+ F +V H KP ASR ES E++++A GFR
Sbjct: 204 VFQGGSEKQMLADLKRLFTQVRHAKPPASRKESSELYVVATGFR 247


>gi|163852846|ref|YP_001640889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           extorquens PA1]
 gi|163664451|gb|ABY31818.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           extorquens PA1]
          Length = 239

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 112/214 (52%), Positives = 149/214 (69%), Gaps = 4/214 (1%)

Query: 14  TQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
            Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KLL+I+E+ ++L+  +RIV
Sbjct: 16  KQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIV 75

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQVAARI G +    R+V ID+L++EP+ G  F   DFLD  + E + + +
Sbjct: 76  DLGAAPGGWSQVAARILGESG---RIVGIDLLEIEPMPGATFITLDFLDPSAPERLTELL 132

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  DLVLSDMA  T GH+K DHLR + L E A  FA E+L  GG +L K FQGGT  D+
Sbjct: 133 GGRADLVLSDMAANTTGHKKTDHLRIIGLAETAAAFAREILAPGGAYLAKVFQGGTEGDL 192

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 193 LTELKRDFATVRHVKPQASRADSSELYVLATGFR 226


>gi|296116233|ref|ZP_06834851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977339|gb|EFG84099.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 213

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K R    +   WL R +NDPYVQ AQ +GWR+R+A+KL++++++  +++   R+VDLG++
Sbjct: 5   KARGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFHLIRPGMRVVDLGAA 64

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG W+QVA +   S+     V+ +D+L ++P+ G    + DF D D  E +R+ + G PD
Sbjct: 65  PGGWAQVAVKRGASH-----VIGVDLLPVDPVPGATIIEGDFNDPDMPERLRELLDGAPD 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LV+SDMA  T GH   DHLR + L E A  FA ++L  GG F+ K FQGG    +L  LK
Sbjct: 120 LVMSDMAPNTTGHAPTDHLRIIGLAELALDFATQILAPGGSFIAKVFQGGAEKQMLQALK 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F +V H KP ASR ES E++++A  FR
Sbjct: 180 HSFGQVRHAKPPASRKESSELYVIATDFR 208


>gi|304391240|ref|ZP_07373184.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
           R2A130]
 gi|303296596|gb|EFL90952.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
           R2A130]
          Length = 246

 Score =  274 bits (700), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 118/218 (54%), Positives = 160/218 (73%), Gaps = 2/218 (0%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R +  KVK  R  + SS  WL R +NDPYVQ+A+ EG+ +R+AYKL+++N+++ IL+   
Sbjct: 28  RNMHTKVKTARGRKLSSTLWLQRQLNDPYVQKARAEGYASRAAYKLIEMNDRYNILKPGY 87

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG++PG W QVAAR  GS+ ++ RVV ID LDM+P+ G    K DFLD D+ + +R
Sbjct: 88  RVVDLGAAPGGWCQVAAREVGSSIDDIRVVGIDYLDMDPVPGATIIKKDFLDDDAPDMLR 147

Query: 130 QAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           +A+GG+P DLV+SDMA PTIGHRK DH+RTM+L E A  FALE++  GG FL KTFQGGT
Sbjct: 148 EALGGHPIDLVMSDMAAPTIGHRKTDHMRTMALVEVAFDFALEVVKPGGHFLTKTFQGGT 207

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +L L+KK+F+ + HVKP ASR  SVE++LLA   +
Sbjct: 208 EQALLDLMKKNFKSIHHVKPPASRDGSVELYLLALDRK 245


>gi|315499641|ref|YP_004088444.1| ribosomal RNA methyltransferase rrmj/ftsj [Asticcacaulis
           excentricus CB 48]
 gi|315417653|gb|ADU14293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Asticcacaulis
           excentricus CB 48]
          Length = 238

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/230 (43%), Positives = 144/230 (62%), Gaps = 9/230 (3%)

Query: 1   MVKPPGS---SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           MVKPP     S R      VK  +    SS  WL R +NDP+VQ+A+ EGWR+R+A+KL 
Sbjct: 13  MVKPPAGGNLSGRAKGHTAVKTAKQRTQSSAKWLERQLNDPFVQKAKAEGWRSRAAFKLQ 72

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I+++  IL+   R+VDLG +PG W Q+A     ++     VV +D+L ++PI G    +
Sbjct: 73  EIDDRFHILKRGARVVDLGCAPGGWVQMAQSRGAAH-----VVGVDLLPVDPIPGADMIE 127

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF D      + + +G  PD+VLSD+A+ T+GHR+ DHL+ M L E A+ FAL+ L  G
Sbjct: 128 ADFTDPAIPARLMEMMGDKPDVVLSDLAHNTVGHRQTDHLKIMGLLELASDFALDNLKPG 187

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K FQGG T  +L  LK  F+ V H KP +SRA+S E++++A+GF+
Sbjct: 188 GAFVAKAFQGGETEHLLLKLKLAFRDVKHFKPKSSRADSSEIYIVAQGFK 237


>gi|182678893|ref|YP_001833039.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634776|gb|ACB95550.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 234

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/226 (47%), Positives = 143/226 (63%), Gaps = 1/226 (0%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           V   G    R L  +VK  R    SS  WL R +NDPYV RA+ EG R+R+AYKL++I+E
Sbjct: 4   VSSSGREGGRSLKTRVKTARKRSLSSTLWLERQLNDPYVARAKREGMRSRAAYKLIEIDE 63

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++  L+  +++VDLG++PG WSQVA R   S     RV+ ID+L+++P+ G +F   DFL
Sbjct: 64  RYPFLKPGQKVVDLGAAPGGWSQVAVRKVQSEQGKGRVIGIDLLEVDPMPGAEFKVLDFL 123

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  + E +   +G   D+VLSDMA    GH+K DHLR + L E A  FA  +L  GG FL
Sbjct: 124 DPAAPETLEHWLGAKADVVLSDMAANATGHKKTDHLRIVGLVELAADFASTILAPGGSFL 183

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K  QGGT N +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 184 AKVLQGGTENSLLAKLKQEFASVRHVKPQASRADSSELYMLATGFR 229


>gi|319406133|emb|CBI79772.1| cell division protein ftsJ [Bartonella sp. AR 15-3]
          Length = 240

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/218 (50%), Positives = 153/218 (70%), Gaps = 2/218 (0%)

Query: 11  RGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           + L Q++K +  + + SSR WL RH+NDPYV +++++G+R+RSAYKL++I+E+++I +  
Sbjct: 16  KALYQRIKKKAGTIKSSSRRWLERHLNDPYVHKSKVDGYRSRSAYKLIEIDERYKIFKKG 75

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           ++++DLG++PG W QV +R   S      VV ID L M+P+ GV   K DFL  D+ + +
Sbjct: 76  QKVIDLGAAPGGWCQVVSRKVASTDQKPSVVGIDYLAMDPLPGVIVLKMDFLCEDAPQKL 135

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
             A+   PD+VLSDMA PT GHRK DHLRTM LCE A  FAL +L  GG FL K FQGG 
Sbjct: 136 MNALETQPDIVLSDMAAPTTGHRKTDHLRTMYLCEMAADFALSVLKTGGHFLAKAFQGGA 195

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            N +L  LK++F+ V HVKP ASRAESVE++LLA  F+
Sbjct: 196 ENTLLTTLKQNFKIVHHVKPPASRAESVELYLLALEFK 233


>gi|254502176|ref|ZP_05114327.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
           alexandrii DFL-11]
 gi|222438247|gb|EEE44926.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
           alexandrii DFL-11]
          Length = 236

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 153/222 (68%), Gaps = 2/222 (0%)

Query: 7   SSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
            S  RG+  KVK+    + SS  WL+R +NDPYV+RA+++G+R+R+AYKL++I++KH++L
Sbjct: 8   GSGDRGMHVKVKSAAGRRESSTRWLSRQLNDPYVRRAKIDGYRSRAAYKLIEIDDKHKLL 67

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   R+VDLG +PG W Q+A     S  ++ +VV ID LDM+ + G  F K DFLD D+ 
Sbjct: 68  KPGYRVVDLGCAPGGWCQIAVDRVKSTIDSPKVVGIDYLDMDHVRGAVFLKKDFLDDDAP 127

Query: 126 EFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
             + +A+GG  PD+VLSDMA PT GH++ DHLRT  L E A  FA   L  GG FL K F
Sbjct: 128 AALMEALGGHKPDVVLSDMAAPTTGHKQTDHLRTTHLFEIAIDFARRNLVPGGSFLAKVF 187

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GGT N +L  LK+ F+ V H+KP ASR ES E++++AKGFR
Sbjct: 188 RGGTENAMLQELKREFKSVAHLKPPASRKESPELYVIAKGFR 229


>gi|239996921|ref|ZP_04717445.1| 23S rRNA methyltransferase J [Alteromonas macleodii ATCC 27126]
          Length = 209

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/211 (40%), Positives = 132/211 (62%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS+ WL  H+ND YVQ+A  EGWR+R+ YKL +I +K ++++    +VDLG+
Sbjct: 1   MTKKKHSASSKRWLQEHVNDHYVQKANKEGWRSRAIYKLEEIQKKDKLIKPGMTLVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ+AA++ G N    +V+A DIL M+PI+GV F + DF +    + +   IGGN 
Sbjct: 61  APGGWSQLAAQLVGDNG---QVIACDILPMDPIVGVDFLQGDFREDAVLDALLNRIGGNT 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D  R+M LCE A     ++L  GG F++K FQG    + +  
Sbjct: 118 VDIVLSDMAPNLAGNASVDQSRSMYLCELALDMCHQVLKPGGSFVIKVFQGEGFVEFMNA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F  +   KP +SR+ S E++L+A G++
Sbjct: 178 LKQSFTTIKTRKPDSSRSRSREVYLVACGYK 208


>gi|209963501|ref|YP_002296416.1| ribosomal RNA large subunit methyltransferase J,RrmJ
           [Rhodospirillum centenum SW]
 gi|209956967|gb|ACI97603.1| ribosomal RNA large subunit methyltransferase J,RrmJ
           [Rhodospirillum centenum SW]
          Length = 227

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 98/213 (46%), Positives = 139/213 (65%), Gaps = 2/213 (0%)

Query: 16  KVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +VK    +  SS  WL R +NDPYV  A+  G+R+R+A+KLLQ++EK   L+  +RIVDL
Sbjct: 2   RVKTAHRRSLSSTRWLERQLNDPYVAEARKRGYRSRAAFKLLQLDEKFHFLRRGQRIVDL 61

Query: 75  GSSPGSWSQVAARITGSN-ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G++PG W+QVA  +      +  +VV +D+L++EP+ G    + DFLD  + + +++ +G
Sbjct: 62  GAAPGGWTQVAVAVVKPGEGSTGKVVGLDLLEVEPVPGATIIQLDFLDASAPDRLKELLG 121

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
           G  D+VLSDMA  T GH   DHLR + L EAA  FA ++L  GG F+ K FQGG T  +L
Sbjct: 122 GQADIVLSDMAANTTGHPATDHLRIIGLAEAAYDFAADVLAPGGAFVCKLFQGGATKGLL 181

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            LLK+ F  V H KP ASRA+S E +++A GFR
Sbjct: 182 DLLKRDFATVRHAKPPASRADSSETYVVATGFR 214


>gi|91976736|ref|YP_569395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB5]
 gi|123762792|sp|Q138J5|RLME_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91683192|gb|ABE39494.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB5]
          Length = 235

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/227 (44%), Positives = 145/227 (63%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSC-QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         +   VK+    + SS+ WL R +NDPYV +A+ +G+R+R+AYKLL+I+
Sbjct: 1   MAKDTTGR----MRVTVKSAGRMKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEID 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K+  L+S   + DLG++PG WSQ+AA+  G+     +V+AID+L+M  I GV F + DF
Sbjct: 57  DKYHFLKSGLAVADLGAAPGGWSQIAAKRVGAPDGRGKVIAIDLLEMGEIPGVTFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           LD  + + +R+ +GG  D+V+SDMA  T GHRK D LR + L E+A  FA E+L  GG F
Sbjct: 117 LDDAAPDRLREMLGGGADVVMSDMAANTTGHRKTDQLRIVGLVESAAQFASEVLKPGGTF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQ G    ++  LK+ F  V HVKP ASR +S E ++LA GFR
Sbjct: 177 VAKVFQSGADATLMTQLKRDFATVKHVKPAASRKDSSERYVLAMGFR 223


>gi|148255007|ref|YP_001239592.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
           sp. BTAi1]
 gi|158513280|sp|A5EHP2|RLME_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146407180|gb|ABQ35686.1| 23S rRNA Um-2552 2'-O-methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 231

 Score =  271 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 102/227 (44%), Positives = 145/227 (63%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         +  +VK     + SS+ WL R +NDPYV +A+ +G+R+R+ YKL++I+
Sbjct: 1   MAKDTTGR----MHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEID 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K+ +L+    +VDLG++PG WSQ+AAR  G+ A   +V+AID+L+M  + GV F + DF
Sbjct: 57  DKYHLLKPGMTVVDLGAAPGGWSQIAARRVGAEAGKGKVIAIDLLEMGEVPGVTFTQMDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              D+ E +R  +GG  D+V+SDMA  T GHRK D LR + L E A  FA E+L  GG F
Sbjct: 117 HAQDAPEKLRAMLGGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L KTFQ G   ++L  LK+ +  V HVKP ASR +S E ++LA GFR
Sbjct: 177 LAKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFR 223


>gi|89095222|ref|ZP_01168145.1| cell division protein FtsJ [Oceanospirillum sp. MED92]
 gi|89080519|gb|EAR59768.1| cell division protein FtsJ [Oceanospirillum sp. MED92]
          Length = 206

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H +D YV++++  G+R+R+++KL++++EK ++ Q    +VDLG++PG W
Sbjct: 3   KSTSSERWLKEHFDDHYVKKSKELGYRSRASFKLIELDEKDKLFQPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQ+AA   G   ++ RVVA DIL M+ + GV+F + DF + +    I +A+G  P DLV+
Sbjct: 63  SQIAAERVG---DHGRVVASDILPMDSMAGVEFVQGDFTEEEVLNRILKALGDEPADLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D    M L E A   A E+L  GG+F+ K FQG   +  L  ++  F
Sbjct: 120 SDMAPNMSGMSAVDQPAAMYLVELALDMAREVLKPGGNFVAKVFQGEGFDQYLKDMRTSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP +SRA S E++LL KGF+
Sbjct: 180 NKVVTRKPDSSRARSREVYLLGKGFK 205


>gi|114327810|ref|YP_744967.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|122327225|sp|Q0BT08|RLME_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114315984|gb|ABI62044.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 230

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 6/225 (2%)

Query: 2   VKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
            +PP     + +  K   R    +S+ WL R +NDPYV  A+ +GWR+R+A+KL+++++K
Sbjct: 6   TQPPTGPRGKVVMLKT-ARKRSVASQRWLTRQLNDPYVAAAKAQGWRSRAAFKLIELDDK 64

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
             ++    R++DLG++PG W+QVA +          VV +D+L ++P+ G    + DF D
Sbjct: 65  FGLISKGSRVIDLGAAPGGWTQVAMKR-----GAAVVVGVDLLPVDPVPGATLIQGDFND 119

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D    +   +GG  DLV+SDMA  T GH   DH+R ++L E A  FA + L  GG F+ 
Sbjct: 120 DDMPARLSSLMGGKADLVMSDMAPNTTGHAATDHMRIIALTELALHFAFDALAPGGAFVA 179

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K FQGG+   +L  +K+ F  V H KP +SR ES E++++AKGFR
Sbjct: 180 KVFQGGSEKQLLEPMKQRFASVRHAKPASSRKESSELYVVAKGFR 224


>gi|170746591|ref|YP_001752851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653113|gb|ACB22168.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
           radiotolerans JCM 2831]
          Length = 241

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/215 (50%), Positives = 149/215 (69%), Gaps = 4/215 (1%)

Query: 13  LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           L Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+AYKLL+I+E++++L+  ++I
Sbjct: 18  LKQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERYKLLRPGQKI 77

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG++PG WSQVAAR+ G      RVV ID+L++EP+ GV+F   DFLD ++ + +   
Sbjct: 78  VDLGAAPGGWSQVAARVVGPTG---RVVGIDLLEIEPMAGVEFITLDFLDPEAPDRLTGM 134

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +GG  DLV+SDMA    GH+K DHLR + L E A  FA E+L  GG +L K  QGGT   
Sbjct: 135 LGGPADLVMSDMAANATGHKKTDHLRIIGLAETAAEFAREILGPGGAYLAKVLQGGTEGA 194

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  LK+ F  V HVKP ASRA+S E+++LA G+R
Sbjct: 195 LLTDLKRDFATVRHVKPAASRADSSELYVLATGYR 229


>gi|115525274|ref|YP_782185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisA53]
 gi|122295646|sp|Q07LH9|RLME_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115519221|gb|ABJ07205.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisA53]
          Length = 235

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/227 (44%), Positives = 142/227 (62%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSC-QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         +   VK+    + SS+ WL R +NDPYV +A+ +G+R+R+AYKLL+I+
Sbjct: 1   MAKDSTGR----MRVTVKSAGRMKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEID 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +KH  L+    +VDLG++PG WSQ+AA+  G+     +VVAID+L+M  I+GV F + DF
Sbjct: 57  DKHHFLKPGASVVDLGAAPGGWSQIAAKRVGATEGKGKVVAIDLLEMPEIVGVTFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L   + E +   IGG  D+V+SDMA  T GHRK D LR + L E A  FA ++L  GG F
Sbjct: 117 LSPAAPEKLLAMIGGRVDVVMSDMAANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQ G    ++  LK+ F  V H+KP ASR +S E ++LA GFR
Sbjct: 177 VAKVFQSGADATLMTQLKRDFASVKHLKPQASRKDSSERYVLALGFR 223


>gi|87198497|ref|YP_495754.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123490739|sp|Q2GB53|RLME_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|87134178|gb|ABD24920.1| 23S rRNA Um-2552 2'-O-methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 222

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/221 (45%), Positives = 150/221 (67%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S S +   +++K  +    SS  WL+R +NDPYV++A+ EGWR+R+A+KL++++EK  +L
Sbjct: 2   SRSDKNPHERLKTAKKRTASSARWLSRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R+VDLG +PG WSQV  +     A   ++V ID+L  EPI GV  F+ DF+  ++ 
Sbjct: 62  KGAKRVVDLGIAPGGWSQVVRK----KAPAAKIVGIDLLPTEPIEGVTIFEMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E ++ A+ G PDLVLSDMA  T+GH++ DHLRTM L E A  FA++ L  GG F+ K F 
Sbjct: 118 EALQSALDGPPDLVLSDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  ++L +LKK+F  V H KP ASR +S E +++A+GF+
Sbjct: 178 GGTDTELLAILKKNFTTVKHAKPPASRKDSSEWYVIAQGFK 218


>gi|326386107|ref|ZP_08207731.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209332|gb|EGD60125.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/221 (45%), Positives = 145/221 (65%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S S R    +++  +    SS  WL R +NDPYVQ+A+ EGWR+R+A+K+++++EK  +L
Sbjct: 2   SRSGRDPGTRLRTAKKRTASSARWLTRQLNDPYVQKARAEGWRSRAAFKMIELDEKFALL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  RR+VDLG +PG WSQV  +     A   +VV ID+L  +PI GV  F+ DF+  ++ 
Sbjct: 62  KGARRVVDLGIAPGGWSQVVRQR----APLAKVVGIDLLPTDPIEGVTIFQMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E +  A+ G PDLV+SDMA  T+GH++ DHLRTM L E A  FA+  L  GG F+ K F 
Sbjct: 118 EALTGALDGPPDLVISDMAANTVGHKQTDHLRTMGLVETAVDFAITHLAPGGAFVAKVFA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT   +L LLK++F  V H KP ASR +S E +++A+GF+
Sbjct: 178 GGTDTTLLNLLKRNFTTVKHAKPPASRKDSSEWYVIAQGFK 218


>gi|83591585|ref|YP_425337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
           ATCC 11170]
 gi|123527542|sp|Q2RXU5|RLME_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83574499|gb|ABC21050.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
           ATCC 11170]
          Length = 263

 Score =  269 bits (687), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/227 (43%), Positives = 145/227 (63%), Gaps = 2/227 (0%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           V+    +  R L  +V+  +  + SS  WL R +NDPYV  A+ +G R+R+A+KL++++E
Sbjct: 24  VRGSAPTGSRDLFVRVRTAKGRKASSTRWLQRQLNDPYVLEAKRQGLRSRAAFKLIELDE 83

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGS-NANNTRVVAIDILDMEPILGVKFFKFDF 119
           +  +L+   R+VDLG++PG W+Q+A   T S + N  +VV +DIL+ E + G      DF
Sbjct: 84  RFTLLKPGMRVVDLGAAPGGWTQIAVERTRSLHPNGGKVVGMDILEWEGVAGATCLTHDF 143

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +D  +   ++ A+ G  DLVLSDMA PT GHR+ DHLR M L EAA +FA E+L  GG F
Sbjct: 144 MDDAAPLMLKGAMDGAVDLVLSDMAAPTTGHRQTDHLRVMGLAEAAWYFAEEVLAPGGAF 203

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQGGT   +L  +KK  + + H KP ASR  S E++++A+GFR
Sbjct: 204 VCKVFQGGTEGALLTRMKKMCEVIRHAKPPASRQGSPEVYVIAQGFR 250


>gi|262371957|ref|ZP_06065236.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           junii SH205]
 gi|262311982|gb|EEY93067.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           junii SH205]
          Length = 216

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/216 (40%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GSN     V+A DIL M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSNG---LVIASDILPMDALPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFIVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPEASRARSKEVFLIGQGRKK 213


>gi|83945237|ref|ZP_00957586.1| Ribosomal RNA large subunit methyltransferase J [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851407|gb|EAP89263.1| Ribosomal RNA large subunit methyltransferase J [Oceanicaulis
           alexandrii HTCC2633]
          Length = 253

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 148/226 (65%), Gaps = 6/226 (2%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
            K   + S +    +VK  R  + SS+ WL R +NDPYV RA+ EG+R+R+AYKL+++++
Sbjct: 23  TKGGDARSAKQFRTRVKTARGRKYSSKLWLERQLNDPYVARAKQEGYRSRAAYKLIELDD 82

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K  +++   R+ DLG++PG W+QVA +    +     V  +D+L++EPI G    + DF 
Sbjct: 83  KFGLIKPGMRVADLGAAPGGWTQVALKRGAEH-----VAGVDLLEIEPIAGAILMQLDFT 137

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           +  + + ++ A+GG  DLV+SD+A  T GH+  DHLR ++L E A +FAL++L  GG F+
Sbjct: 138 EEGAEDKLKAALGGPADLVISDLAPWTTGHKSTDHLRIVALVETAAYFALDVLKPGGGFI 197

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQGG T ++L LLK  F+KV H KP ASR+ES E FLLA GFR
Sbjct: 198 AKVFQGGATGELLDLLKHRFEKVRHYKPPASRSESAETFLLATGFR 243


>gi|162147649|ref|YP_001602110.1| ribosomal RNA large subunit methyltransferase J [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542278|ref|YP_002274507.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786226|emb|CAP55808.1| putative ribosomal RNA large subunit methyltransferase J
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529955|gb|ACI49892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 264

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/223 (40%), Positives = 139/223 (62%), Gaps = 8/223 (3%)

Query: 7   SSSRRGLTQKVKNRSCQGSS---RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
            +++    Q V  R+ +G +   + WLNR +NDPYVQ A+ +GWR+R+A+KL++++++  
Sbjct: 35  GAAQSTRNQAVSLRTARGRTTAQQRWLNRQLNDPYVQAARKQGWRSRAAFKLIELDDRFH 94

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +++   R++DLG++PG W+QVA +          VV +D+L ++P+ G    + DF D D
Sbjct: 95  LIRPGMRVIDLGAAPGGWTQVAVKR-----GAAYVVGVDLLPVDPVAGATIIEGDFNDPD 149

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               +   +GG  DLVLSDMA  T GH   DHLR + L E A  FA+++L  GG F+ K 
Sbjct: 150 MPARLIDLLGGPADLVLSDMAPNTTGHAPTDHLRIIGLAELALDFAVKVLAPGGGFVAKV 209

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG+   +L  +K+ F  V H KP ASR ES E++++A GFR
Sbjct: 210 FQGGSEKQMLAPMKQAFATVRHAKPPASRKESSELYVVATGFR 252


>gi|27379081|ref|NP_770610.1| cell division protein [Bradyrhizobium japonicum USDA 110]
 gi|81737558|sp|Q89N72|RLME_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|27352231|dbj|BAC49235.1| cell division protein [Bradyrhizobium japonicum USDA 110]
          Length = 228

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/227 (46%), Positives = 145/227 (63%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         L  +VK     + SS+ WL R +NDPYV +A+  G+R+R+A+KLL+I+
Sbjct: 1   MAKDTTGR----LHVQVKTGGKRKLSSKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEID 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K ++L+    +VDLG++PG WSQ+AA+  GS     +VVAID+L+M  I GV+F + DF
Sbjct: 57  DKFRLLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGKGKVVAIDLLEMPEIAGVEFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +D D+   +   +GG  D+V+SDMA  T GHRK D LR + L E A  FA ++L  GG F
Sbjct: 117 MDNDAPAKLTAMLGGGADVVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L KTFQ G   D+L  LK+ F  V HVKP ASR +S E ++LA GFR
Sbjct: 177 LAKTFQSGADADLLAQLKRDFATVRHVKPAASRQDSSERYVLATGFR 223


>gi|296283049|ref|ZP_06861047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Citromicrobium
           bathyomarinum JL354]
          Length = 226

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S SR    ++VK  R    SS  WL R +NDPYV+ A+  G+R+R+A+KL++++EK  IL
Sbjct: 2   SRSRGDPQKRVKTARGRTASSNRWLERQLNDPYVREAKAAGYRSRAAFKLIELDEKFGIL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   RIVDLG +PG WSQ+A +          +V ID+L  EP+ GV   + DF+  ++ 
Sbjct: 62  RGAERIVDLGIAPGGWSQIAQK----KRPQATIVGIDLLPTEPLDGVTILEMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E I   +GG PDLV+SDMA  T+GH++ DHLRTM L E A  FA++ L  GG FL K   
Sbjct: 118 ETIMGHLGGPPDLVMSDMAANTVGHKQTDHLRTMGLVETAADFAIQTLAPGGQFLAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT   +L LLKK+F+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDAQLLALLKKNFKTVKHAKPPASRKGSSEWYVVAQGFK 218


>gi|120553329|ref|YP_957680.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter aquaeolei
           VT8]
 gi|143460489|sp|A1TXM4|RLME_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120323178|gb|ABM17493.1| 23S rRNA Um-2552 2'-O-methyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 207

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H+NDP+V++AQ +G+R+R++YKLL+IN K ++++    +VDLGS+PG W
Sbjct: 3   RSKSSNRWLEEHVNDPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVL 140
           SQVAA++ G      RVVA DIL M+PI GV+F + DF + + ++ I   + G   D+V+
Sbjct: 63  SQVAAKLVGHKG---RVVASDILPMDPIAGVEFIQGDFTEQEVFDQIMAILDGARADVVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G    D   +M L E A   A ++L   G F+ K F G   ++ +  +++ F
Sbjct: 120 SDMAPNISGVNAADQAASMYLVELALDMACQVLKPKGSFVAKVFHGEGYDEYVKTVRESF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP +SRA S E++L+AKGFR
Sbjct: 180 DKVVIRKPDSSRARSREVYLVAKGFR 205


>gi|146340136|ref|YP_001205184.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
           sp. ORS278]
 gi|158514219|sp|A4YSS3|RLME_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146192942|emb|CAL76949.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
           sp. ORS278]
          Length = 231

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/227 (46%), Positives = 145/227 (63%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         +  +VK     + SS+ WL R +NDPYV +A+ +G+R+R+ YKL++I+
Sbjct: 1   MAKDTTGR----MHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEID 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K+ +L+    +VDLG++PG WSQ+AAR  G+ A   +VVAID+L+M  I GV F + DF
Sbjct: 57  DKYHMLKPGMTVVDLGAAPGGWSQIAARRVGAEAGKGKVVAIDLLEMGEIPGVTFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              D+ E +R  IGG  D+V+SDMA  T GHRK D LR + L E A  FA E+L  GG F
Sbjct: 117 HAQDAPEKLRTMIGGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L KTFQ G   ++L  LK+ +  V HVKP ASR +S E ++LA GFR
Sbjct: 177 LAKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFR 223


>gi|329850827|ref|ZP_08265672.1| ftsJ-like methyltransferase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328841142|gb|EGF90713.1| ftsJ-like methyltransferase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 226

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 100/230 (43%), Positives = 144/230 (62%), Gaps = 9/230 (3%)

Query: 1   MVKPPGSS---SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           MVKPP       R      VK  +    SS  WL R +NDPYVQ+A+ EGWR+R+A+KL+
Sbjct: 1   MVKPPEGGTLAGRGKGHTAVKTAKYRTQSSAKWLERQLNDPYVQQAKAEGWRSRAAFKLI 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           +I+E+  +L+   R++DLG +PG W QVA +   ++     VV +D+L ++P+ G    +
Sbjct: 61  EIDERFHLLKRGSRVIDLGCAPGGWVQVAKKRGAAH-----VVGVDLLPVDPVPGADILE 115

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF D      + + +GG PD+VLSD+A+ T+GH++ DHL+ M L E A  FALE L  G
Sbjct: 116 ADFTDPAIGPQLIELMGGKPDIVLSDLAHNTVGHKQTDHLKIMGLLEMAGDFALENLKPG 175

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K FQGG T ++L  LK  F  V H+KP +SRA S E++++A GFR
Sbjct: 176 GAFVAKAFQGGETEELLLKLKLAFDVVKHMKPKSSRAGSTEIYIVATGFR 225


>gi|288941981|ref|YP_003444221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
           DSM 180]
 gi|288897353|gb|ADC63189.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
           DSM 180]
          Length = 206

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 100/207 (48%), Positives = 132/207 (63%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SSR WL+RH NDPYV+R Q++G+R+R+AYKLL+I EK  IL+   R+VDLG++PGS
Sbjct: 2   SRTKSSRRWLDRHFNDPYVKRVQVDGYRSRAAYKLLEIQEKDPILKPGMRVVDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ+A ++ G       VVA+DIL MEP+ GV   + DF D +    +R+AIG  P D+V
Sbjct: 62  WSQIARQLVGPEG---CVVALDILPMEPLPGVVVLQGDFRDDEVLSRLREAIGEAPLDVV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A   A   L  GG  + K FQG   +D +  L+  
Sbjct: 119 LSDMAPNITGTMVVDQTRAMYLVELALELARSHLKPGGTLVTKVFQGTGFDDYMRELRSS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F++V   KP +SR ES E+FL+AKGFR
Sbjct: 179 FRQVATRKPKSSRTESREVFLVAKGFR 205


>gi|197104878|ref|YP_002130255.1| cell division protein FtsJ [Phenylobacterium zucineum HLK1]
 gi|196478298|gb|ACG77826.1| cell division protein FtsJ [Phenylobacterium zucineum HLK1]
          Length = 239

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 142/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSS--SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP       RG   ++K  +    S + WL R +NDP+  +A+  G+R+R+A+K+ +
Sbjct: 9   MVKPPTGGQEGGRGKPARLKTAKQRTPSQQAWLERQVNDPFAAKARALGYRSRAAFKISE 68

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+++  + +   R+VDLG +PG W+QVA +        T +V +D+L +EP+      + 
Sbjct: 69  IDDRFHLFRKGVRVVDLGLAPGGWTQVAIQR-----GVTDIVGVDLLPVEPLPPAHILQM 123

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D      + + +GG PD+V+SDMA  TIGHR+ DHLR + L EAA  FA+E+L  GG
Sbjct: 124 DFTDPACGPKLIELLGGPPDVVISDMAPNTIGHRETDHLRIVGLIEAAIDFAVEVLKPGG 183

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T+ I+  LK  F+ V ++KP ASR +S E+FL+A GF+
Sbjct: 184 TFVAKAFQGGGTDQIIAGLKTRFKDVRNIKPKASRQDSSEVFLVATGFK 232


>gi|217977510|ref|YP_002361657.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocella silvestris
           BL2]
 gi|217502886|gb|ACK50295.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocella silvestris
           BL2]
          Length = 237

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 104/228 (45%), Positives = 144/228 (63%), Gaps = 6/228 (2%)

Query: 5   PGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
            G    R L  +VK  R    SS  WL R +NDPYV +A+ EG+R+R+AYKL++I+++  
Sbjct: 6   SGREGGRSLKTRVKTARKRTLSSTLWLQRQLNDPYVAQAKREGFRSRAAYKLIEIDDRFH 65

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-----RVVAIDILDMEPILGVKFFKFD 118
            L+  ++I+DLG++PG WSQVAA  TG+          R++ ID+L +E + G +F   D
Sbjct: 66  FLRPGQKIIDLGAAPGGWSQVAAVRTGAAQGEGQTGRARIIGIDLLPIETLPGAEFKVMD 125

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FL+ ++   + + +GG  D+VLSDMA    GH+K DHLR + L E A  FA E L  GG 
Sbjct: 126 FLEPEAPRLLTEWLGGKADVVLSDMAANATGHKKTDHLRIVGLVELAGDFACEALAPGGA 185

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL K  QGGT N +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 186 FLAKVLQGGTENVLLAKLKRDFAVVRHVKPQASRADSSELYVLATGFR 233


>gi|163797468|ref|ZP_02191419.1| 23S rRNA methylase [alpha proteobacterium BAL199]
 gi|159177217|gb|EDP61776.1| 23S rRNA methylase [alpha proteobacterium BAL199]
          Length = 251

 Score =  267 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 2/218 (0%)

Query: 10  RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
            R +  +VK  R    SS+ WL R +NDP+V  ++  G+R+R+A+KL+Q+NE+   L+  
Sbjct: 29  SRQVFVRVKTARGRTASSQRWLERQLNDPFVAESKRLGYRSRAAFKLIQLNERFNFLRPG 88

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
            R+VDLG++PG W+Q++    G+      VV +DIL +EPI G    + DF+  D+ + I
Sbjct: 89  ARVVDLGAAPGGWTQISVDRVGA-PGRGLVVGLDILPVEPIAGATLIEADFMADDAPQQI 147

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           + A GG  D+VLSDMA  T GH + DHLR + LCEAA  FALE+L   G F+ K FQGG+
Sbjct: 148 KAATGGLVDVVLSDMAAQTTGHPQTDHLRIVGLCEAAFEFALEVLAPEGTFVAKVFQGGS 207

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +L  +K+ F+ V H KP ASRAES E +++A GFR
Sbjct: 208 ETAMLARMKRAFKAVRHAKPPASRAESAETYVVATGFR 245


>gi|84503534|ref|ZP_01001585.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           batsensis HTCC2597]
 gi|84388024|gb|EAQ01072.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           batsensis HTCC2597]
          Length = 238

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 148/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSS-----SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R  + SS  WL R +NDPYVQRA+ EG+R R+A+K
Sbjct: 1   MAKKPTGRNTSGRGQRDLTVKVKTARGRKLSSTRWLQRQLNDPYVQRAKAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPI 109
           +++I++K + L    R+VDLG +PG W QVA     +          R++ +D+ ++EP+
Sbjct: 61  IMEIDDKFRFLVPGARVVDLGCAPGGWLQVAVPRINALGEKQGKAQGRIIGVDLQEVEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF+  D+ E ++  +GG  D+V+SDMA  + GH++ DHLR +SLCEAA +FA
Sbjct: 121 PGAEIHQLDFMADDADEQVKTWLGGEADVVMSDMAAASSGHKQTDHLRIISLCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV ++KP ASRA+S E F++A GFR
Sbjct: 181 FDVLAPGGTFVAKVLAGGAEGELQKLLKQKFDKVANMKPPASRADSSEKFVVATGFR 237


>gi|56696734|ref|YP_167095.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
           DSS-3]
 gi|81349883|sp|Q5LSB0|RLME_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56678471|gb|AAV95137.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
           DSS-3]
          Length = 233

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 102/232 (43%), Positives = 149/232 (64%), Gaps = 6/232 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K      +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K+L+++
Sbjct: 1   MAKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKILELD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKF 114
           EK++ L    R+VDLG +PG W QVA +        S+    RV+ ID+ ++EPI G + 
Sbjct: 61  EKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGERSDKRVGRVLGIDLQEVEPIAGAEI 120

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            + DFLD  + + I++ +GG  D+V+SDMA  + GH++ DH+R ++LCEAA + A ++L 
Sbjct: 121 HQLDFLDDGADDRIKEWLGGKADVVMSDMAASSSGHKQTDHMRIIALCEAAAYLAFDVLE 180

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K   GG   D+  LLK+ F KV +VKP ASR++S E F++A GFR
Sbjct: 181 EGGTFVAKVLAGGAEGDLQKLLKQKFTKVANVKPPASRSDSSEKFVVATGFR 232


>gi|169632637|ref|YP_001706373.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii SDF]
 gi|169794969|ref|YP_001712762.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii AYE]
 gi|184159245|ref|YP_001847584.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213157620|ref|YP_002320418.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii AB0057]
 gi|215482520|ref|YP_002324708.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239503386|ref|ZP_04662696.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB900]
 gi|260549221|ref|ZP_05823441.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
           RUH2624]
 gi|260556451|ref|ZP_05828669.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii ATCC 19606]
 gi|301346065|ref|ZP_07226806.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB056]
 gi|301511493|ref|ZP_07236730.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB058]
 gi|301595416|ref|ZP_07240424.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB059]
 gi|332855128|ref|ZP_08435711.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013150]
 gi|332868236|ref|ZP_08438078.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013113]
 gi|332876154|ref|ZP_08443936.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6014059]
 gi|158513670|sp|A3M851|RLME_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703271|sp|B7GY18|RLME_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703272|sp|B7I636|RLME_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703273|sp|B2HXD3|RLME_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703274|sp|B0VSM4|RLME_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703275|sp|B0VEE9|RLME_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|169147896|emb|CAM85759.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii AYE]
 gi|169151429|emb|CAP00164.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter baumannii]
 gi|183210839|gb|ACC58237.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
 gi|193078152|gb|ABO13095.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|213056780|gb|ACJ41682.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii AB0057]
 gi|213986569|gb|ACJ56868.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260407627|gb|EEX01100.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
           RUH2624]
 gi|260409710|gb|EEX03010.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii ATCC 19606]
 gi|322509159|gb|ADX04613.1| Ribosomal RNA large subunit methyltransferase [Acinetobacter
           baumannii 1656-2]
 gi|323519187|gb|ADX93568.1| 23S rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|325123186|gb|ADY82709.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
 gi|332727631|gb|EGJ59050.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013150]
 gi|332733497|gb|EGJ64667.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6013113]
 gi|332735652|gb|EGJ66697.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           baumannii 6014059]
          Length = 216

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/216 (40%), Positives = 135/216 (62%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      V+A DIL M+ +  V F + DF +   +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVIASDILPMDALPDVTFLQGDFREEAVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPAASRARSKEVFLVGQGRKK 213


>gi|332188162|ref|ZP_08389891.1| ftsJ-like methyltransferase family protein [Sphingomonas sp. S17]
 gi|332011769|gb|EGI53845.1| ftsJ-like methyltransferase family protein [Sphingomonas sp. S17]
          Length = 231

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/221 (45%), Positives = 147/221 (66%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S    GL Q+V+  R+    S  WL R +NDPYV+RA+ EG+R+R+AYKL++++E+   L
Sbjct: 2   SRGNSGLHQRVRTARNRTAQSTRWLERQLNDPYVRRAKAEGYRSRAAYKLIELDERFGFL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +RI+DLG +PG WSQV  R   + A    VV ID+L ++PI GV  F+ DF+D  + 
Sbjct: 62  RGKKRIIDLGIAPGGWSQVVRRKLPNAA----VVGIDLLPVDPIDGVTIFEMDFMDDAAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           + + +A+GG PDLV+SDMA  T+GH + D LRTM L E A  FA ++L+ GG F+ K F 
Sbjct: 118 DRLMEALGGAPDLVMSDMAANTVGHPQTDALRTMGLVETAFAFACDVLSPGGVFVSKVFA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG  + ++  +K+HF  V H KP +SR  SVE F++A+GF+
Sbjct: 178 GGADSQLVAEMKRHFATVKHAKPPSSRKGSVEWFVVAQGFK 218


>gi|316934646|ref|YP_004109628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris DX-1]
 gi|315602360|gb|ADU44895.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris DX-1]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/226 (46%), Positives = 146/226 (64%), Gaps = 3/226 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K   ++ R  +T K   R  + SS+ WL R +NDPYV +A+ +G+R+R+AYKL +I++
Sbjct: 1   MAK--DTTGRMRVTVKSGGR-MKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDD 57

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K ++L+    +VDLG++PG WSQVAA+  G+     +VVAID+L+M  + GV F + DFL
Sbjct: 58  KFRLLKPGMAVVDLGAAPGGWSQVAAKKVGAAEGRGKVVAIDLLEMGEVPGVTFAQLDFL 117

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  + + +R  +GG  DLV+SDMA  T GHRK D LR + L E A  FA E+L  GG FL
Sbjct: 118 DPSAPDRLRDMLGGGADLVMSDMAANTTGHRKTDQLRIVGLVETAAMFAAEVLKPGGAFL 177

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ G    ++  LK+ +  V HVKP ASR +S E +LLA GFR
Sbjct: 178 AKVFQSGADAALMAELKRDYASVKHVKPAASRKDSSERYLLATGFR 223


>gi|294010578|ref|YP_003544038.1| cell division protein methyltransferase FtsJ [Sphingobium japonicum
           UT26S]
 gi|292673908|dbj|BAI95426.1| cell division protein methyltransferase FtsJ [Sphingobium japonicum
           UT26S]
          Length = 215

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/212 (47%), Positives = 141/212 (66%), Gaps = 5/212 (2%)

Query: 16  KVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +VK  +     S  WL R +NDPYV+RA+ EGWR+R+A+KL++++EK   L+ +R +VDL
Sbjct: 2   RVKTAKGRTAQSTRWLERQLNDPYVRRAKAEGWRSRAAFKLIELDEKFHFLKGSRAVVDL 61

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           G +PG W+QV  ++        +VV ID+L  +PI GV  F+ DF+D  +   + +A+G 
Sbjct: 62  GVAPGGWAQVVRKLCPK----AKVVGIDLLPTDPIPGVTLFQMDFMDDKAPALLAEALGD 117

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
            PDLV+SDMA  T+GH   DHLRTM L EAA  FA+E L  GG F+ K F GGT  D+L 
Sbjct: 118 APDLVISDMAANTVGHAATDHLRTMGLVEAAAMFAVENLRKGGTFVAKVFAGGTDADLLA 177

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +LK+HF  + H KP ASR  SVE +++A+GF+
Sbjct: 178 ILKRHFTTIKHAKPPASRKGSVEWYVVAQGFK 209


>gi|255318895|ref|ZP_05360121.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SK82]
 gi|262378850|ref|ZP_06072007.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SH164]
 gi|255304151|gb|EET83342.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SK82]
 gi|262300135|gb|EEY88047.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           radioresistens SH164]
          Length = 216

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/216 (40%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   V+A DIL M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DKGLVIASDILPMDALADVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTVKPAASRARSKEVFLIGQGRKK 213


>gi|114562160|ref|YP_749673.1| 23S rRNA methyltransferase J [Shewanella frigidimarina NCIMB 400]
 gi|122300525|sp|Q086I0|RLME_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114333453|gb|ABI70835.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella frigidimarina
           NCIMB 400]
          Length = 209

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/211 (38%), Positives = 125/211 (59%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL +I EK  +++    +VDLG+
Sbjct: 1   MTTKKRTASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDHLIKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVAA++TG   +  +V+A DIL M+PI+GV F + DF +    + + + +G   
Sbjct: 61  APGGWSQVAAKLTG---DKGKVIACDILPMDPIVGVDFLQGDFREDKVLQALLERVGQDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   +D +  
Sbjct: 118 VDVVLSDMAPNMSGSGAVDQPRAMYLVELALDMCHQVLTPNGCFAVKVFQGEGFDDYIKT 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VKQAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|192290875|ref|YP_001991480.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris TIE-1]
 gi|226705305|sp|B3QFD2|RLME_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|192284624|gb|ACF01005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris TIE-1]
          Length = 237

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 148/226 (65%), Gaps = 3/226 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K   ++ R  +T K   R  + SS+ WL R +NDPYV +A+ +G+R+R+AYKL +I++
Sbjct: 1   MAK--DTTGRMRVTVKSGGR-MKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDD 57

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K ++L+S   +VDLG++PG WSQVAA+  G+     +VVAID+L+M  + GV F + DFL
Sbjct: 58  KFRLLKSGMAVVDLGAAPGGWSQVAAKKVGAADGRGKVVAIDLLEMGEVPGVTFAQLDFL 117

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  + E +R+ +GG  D+V+SDMA  T GHRK D LR + L E A  FA E+L  GG FL
Sbjct: 118 DPSAPERLREMLGGGADIVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFL 177

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ G    ++  LK+ +  V HVKP ASR +S E +LLA GFR
Sbjct: 178 AKVFQSGADASLMTELKRDYASVKHVKPAASRKDSSERYLLATGFR 223


>gi|39935266|ref|NP_947542.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris CGA009]
 gi|81562937|sp|Q6N7Q9|RLME_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|39649118|emb|CAE27638.1| cell division protein FtsJ [Rhodopseudomonas palustris CGA009]
          Length = 237

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 148/226 (65%), Gaps = 3/226 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K   ++ R  +T K   R  + SS+ WL R +NDPYV +A+ +G+R+R+AYKL +I++
Sbjct: 1   MAK--DTTGRMRVTVKSGGR-MKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDD 57

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K ++L+S   +VDLG++PG WSQVAA+  G+     +VVAID+L+M  + GV F + DFL
Sbjct: 58  KFRLLKSGMAVVDLGAAPGGWSQVAAKKVGAADGRGKVVAIDLLEMGEVPGVTFAQLDFL 117

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D  + E +R+ +GG  D+V+SDMA  T GHRK D LR + L E A  FA E+L  GG FL
Sbjct: 118 DPSAPERLREMLGGGADIVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFL 177

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ G    ++  LK+ +  V HVKP ASR +S E +LLA GFR
Sbjct: 178 AKVFQSGADASLMTELKRDYASVKHVKPAASRKDSSERYLLATGFR 223


>gi|299769010|ref|YP_003731036.1| FtsJ-like methyltransferase family protein [Acinetobacter sp. DR1]
 gi|298699098|gb|ADI89663.1| FtsJ-like methyltransferase family protein [Acinetobacter sp. DR1]
          Length = 216

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/216 (40%), Positives = 136/216 (62%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      V+A DIL M+ +  V F + DF + D +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVIASDILPMDALPDVSFLQGDFREEDVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G  +VK FQG   ++
Sbjct: 118 NGRQVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQLVVKVFQGAGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTVKPAASRARSKEVFLVGQGRKK 213


>gi|262278061|ref|ZP_06055846.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258412|gb|EEY77145.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           calcoaceticus RUH2202]
          Length = 216

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/216 (41%), Positives = 136/216 (62%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRVWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      VVA DIL M+ +  V F + DF + D +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVVASDILPMDALPDVTFLQGDFREEDVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGTGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPAASRARSKEVFLIGQGRKK 213


>gi|226951533|ref|ZP_03821997.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter sp. ATCC 27244]
 gi|226837725|gb|EEH70108.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter sp. ATCC 27244]
          Length = 216

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/216 (41%), Positives = 138/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MAIRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GSN     V+A DIL+M+ +  V F + DF + D +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSNG---LVIASDILEMDALPDVTFLQGDFREEDVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPAASRARSKEVFLIGQGRKK 213


>gi|148261003|ref|YP_001235130.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidiphilium cryptum
           JF-5]
 gi|326404403|ref|YP_004284485.1| ribosomal RNA large subunit methyltransferase J [Acidiphilium
           multivorum AIU301]
 gi|189044083|sp|A5G029|RLME_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146402684|gb|ABQ31211.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidiphilium cryptum JF-5]
 gi|325051265|dbj|BAJ81603.1| ribosomal RNA large subunit methyltransferase J [Acidiphilium
           multivorum AIU301]
          Length = 225

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/226 (43%), Positives = 137/226 (60%), Gaps = 5/226 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M +    S RR   +    R  + SS+ WL R +NDPYV  A+  G+R+R+A+KL++++E
Sbjct: 1   MTEETIGSRRRAAVRLKAARKHKPSSQKWLLRQLNDPYVAAAKERGFRSRAAFKLIELDE 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K  ++    R+VDLG++PG W+QVA     S     RVV ID+LD++PI G    K DF 
Sbjct: 61  KFGLIGKGARVVDLGAAPGGWTQVALERGAS-----RVVGIDLLDIDPIAGATLIKGDFQ 115

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D      + + +GG  D+V+SDMA  T GH   DHLR M L E A  FA + L  GG F+
Sbjct: 116 DESMETALAEILGGPADVVMSDMAPNTTGHTATDHLRIMGLAELALDFAFKHLAPGGAFV 175

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQGG   D+L LLK+ F +V H KP ASR +S E++L+A G+R
Sbjct: 176 TKLFQGGAQGDMLNLLKRRFAQVRHAKPEASRKDSRELYLVATGYR 221


>gi|58040688|ref|YP_192652.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
           oxydans 621H]
 gi|81351345|sp|Q5FNQ1|RLME_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58003102|gb|AAW61996.1| Ribosomal RNA large subunit methyltransferase J [Gluconobacter
           oxydans 621H]
          Length = 268

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 144/223 (64%), Gaps = 8/223 (3%)

Query: 7   SSSRRGLTQKVKNRSCQGSS---RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           +++R    + V  R+ +G +   + WLNR +NDPYV  A+ +GWR+R+A+KL++I+++ +
Sbjct: 40  ATARTARNKTVSLRTARGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFK 99

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           ++    RI+DLG++PG W+QVA +    +     VV +D+L ++P+ G +  + DF D +
Sbjct: 100 LIGEGTRIIDLGAAPGGWTQVAVKRGAKH-----VVGLDLLPVDPVAGAEIIEGDFTDPE 154

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
             + ++  +GG  DLV+SDMA  T GH   DH+R M L E A  FA ++L  GG F+ K 
Sbjct: 155 MPDRLKDMLGGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKV 214

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQGG+  D+L L+K  F  V HVKP ASR ES E++++A GFR
Sbjct: 215 FQGGSEKDMLALMKTAFSSVKHVKPPASRKESSELYVIATGFR 257


>gi|294651175|ref|ZP_06728507.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822928|gb|EFF81799.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 216

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/216 (40%), Positives = 138/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MAIRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GSN     V+A DIL+M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSNG---LVIASDILEMDALPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRQVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTAKPAASRARSKEVFLIGQGRKK 213


>gi|50085896|ref|YP_047406.1| cell division protein [Acinetobacter sp. ADP1]
 gi|81392452|sp|Q6F8N1|RLME_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49531872|emb|CAG69584.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Acinetobacter sp. ADP1]
          Length = 216

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/216 (40%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYRLIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ GS      V+A DIL M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVGSKG---LVIASDILAMDTLPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 NGRTVDIVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPDGQFVVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTVKPAASRARSKEVFLIGQGRKK 213


>gi|119774090|ref|YP_926830.1| 23S rRNA methyltransferase J [Shewanella amazonensis SB2B]
 gi|143461617|sp|A1S454|RLME_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119766590|gb|ABL99160.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           amazonensis SB2B]
          Length = 209

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL ++ EK  +++    +VDLG+
Sbjct: 1   MTAKKRSASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDHLIKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +      + + +G   
Sbjct: 61  APGGWSQVAVKLVG---DRGKVIACDILPMDPIVGVDFLQGDFREDAVLNALLERVGDEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VREAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|307294965|ref|ZP_07574807.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingobium
           chlorophenolicum L-1]
 gi|306879439|gb|EFN10657.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingobium
           chlorophenolicum L-1]
          Length = 223

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/221 (46%), Positives = 146/221 (66%), Gaps = 6/221 (2%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G+ + +   +  K R+ Q  S  WL R +NDPYV+RA+ EGWR+R+A+KL++++EK   +
Sbjct: 3   GTGAGKVRVKTAKGRTAQ--STRWLERQLNDPYVRRAKAEGWRSRAAFKLIELDEKFHFV 60

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + +R +VDLG +PG W+QV  ++        +VV ID+L  +PI GV  F+ DF+D  + 
Sbjct: 61  KGSRAVVDLGVAPGGWAQVVRKLCPK----AKVVGIDLLPTDPIPGVTLFQMDFMDDKAP 116

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + +A+G  PDLV+SDMA  T+GH   DHLRTM L EAA  FA+E L  GG F+ K F 
Sbjct: 117 VLLAEALGDAPDLVISDMAANTVGHAATDHLRTMGLVEAAAMFAVENLRKGGTFVAKVFA 176

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  D+L +LKKHF  + H KP ASR  SVE +++A+GF+
Sbjct: 177 GGTDADLLAILKKHFTTIKHAKPPASRKGSVEWYVVAQGFK 217


>gi|84687207|ref|ZP_01015088.1| ribosomal RNA large subunit methyltransferase J [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664795|gb|EAQ11278.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2654]
          Length = 238

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPG-----SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M KPPG        +R L  KVK+ R  + SS  WL R +NDPYV+RA+ EG+R R+A+K
Sbjct: 1   MTKPPGKKNASGRGQRDLRVKVKSARGRKLSSTRWLERQLNDPYVKRARDEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPI 109
           +L+I+EK + L    R+VDLG +PG W QVA                 V+ +D+ ++EP+
Sbjct: 61  ILEIDEKFRFLVPGARVVDLGCAPGGWLQVAVERVNALGEKKGTKVGTVLGVDLQEVEPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G + ++ DF++ D+ E +++ +GG  D+V+SDMA  + GH++ DHLR ++LCE A +FA
Sbjct: 121 AGAEAYQLDFMEDDADEKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ F KV+++KP ASR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGDLQKLLKQKFTKVVNIKPPASRSDSSEKFVVATGFR 237


>gi|311696506|gb|ADP99379.1| ribosomal RNA large subunit methyltransferase J [marine bacterium
           HP15]
          Length = 206

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 131/206 (63%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H+NDP+V++AQ++G+R+R++YKLL+IN+K +++  N  +VDLGS+PG W
Sbjct: 3   RSKSSNRWLEEHVNDPFVKQAQVDGYRSRASYKLLEINKKDRLIHPNMVVVDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G      RV+A DIL M+ I GV F + DF + D +E I   +G +P D+V+
Sbjct: 63  SQVAAKLVGHKG---RVIASDILPMDAIAGVDFIQGDFTENDVFESIMATLGDDPVDVVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G    D   +M L E A   A ++L   G FL K FQG   ++ L  ++  F
Sbjct: 120 SDMAPNISGVTVADQASSMYLVELALDMASQVLKPKGSFLAKVFQGEGYDEYLKSVRAVF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP +SR+ S E+++L KGF+
Sbjct: 180 DKVVVRKPDSSRSRSREVYILGKGFK 205


>gi|46203098|ref|ZP_00208794.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 251

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 110/214 (51%), Positives = 148/214 (69%), Gaps = 4/214 (1%)

Query: 14  TQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
            Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KL++I+E+ ++L+  +RIV
Sbjct: 29  KQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPGQRIV 88

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQVAA+I G N     +V ID+L++EP+ G  F   DFLD  +   + + +
Sbjct: 89  DLGAAPGGWSQVAAKIVGENG---CIVGIDLLEIEPMAGATFITLDFLDESAPARLHELL 145

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  DLVLSDMA  T GH+K DHLRT+ L E A  FA E+L  GG FL K FQGGT  ++
Sbjct: 146 GGKADLVLSDMAANTTGHKKTDHLRTIGLAETAAAFAAEILAPGGAFLAKVFQGGTEGEL 205

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 206 LADLKRDFAVVRHVKPAASRADSSELYVLATGFR 239


>gi|90424572|ref|YP_532942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB18]
 gi|123275111|sp|Q212R3|RLME_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|90106586|gb|ABD88623.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris BisB18]
          Length = 238

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 101/227 (44%), Positives = 141/227 (62%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSC-QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         L   VK+    + SS+ WL R +NDPYV +A+ +G R+R+AYKL++I+
Sbjct: 1   MAKDTTGR----LRVTVKSAGRLKLSSKLWLERQLNDPYVAQAKRDGLRSRAAYKLIEID 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K+  L+    +VDLG++PG WSQVAA+  G+     +VVAID+L+M  I+GV F + DF
Sbjct: 57  DKYHFLKPGIAVVDLGAAPGGWSQVAAKRVGAADGRGKVVAIDLLEMPEIVGVDFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L  ++   +   IGG  D+VLSDMA  T GHRK D LR + L E A  FA ++L  GG F
Sbjct: 117 LHAEAPAKLLSMIGGKVDVVLSDMAANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQ G    ++  LK+ F  V HVKP +SR +S E ++LA GFR
Sbjct: 177 VAKVFQSGADATLVTQLKRDFVTVKHVKPASSRKDSSERYVLAMGFR 223


>gi|114569722|ref|YP_756402.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Maricaulis maris MCS10]
 gi|122316269|sp|Q0AQH3|RLME_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114340184|gb|ABI65464.1| 23S rRNA Um-2552 2'-O-methyltransferase [Maricaulis maris MCS10]
          Length = 279

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 150/227 (66%), Gaps = 6/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K   + + + + ++VK  R  + SS  WL R +NDPYV++AQ+EG+R+R+AYKLLQ++
Sbjct: 57  MKKGGDARAAKQMFERVKTARGRKSSSTRWLQRQLNDPYVKKAQMEGYRSRAAYKLLQLD 116

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           E+ ++L+   R+VDLGS+PG W QVA +   S      VV ID+L+ME I G    + DF
Sbjct: 117 ERFKLLKPGMRVVDLGSAPGGWVQVALKSGASE-----VVGIDLLEMEAIAGATLLEKDF 171

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            D D+   ++  +GG  D V+SD+A  T GH+  DHLR ++L E A  FA+E L  GG F
Sbjct: 172 TDADAPSLVKAEMGGAADAVVSDLAPWTTGHKTTDHLRIVALAELAAHFAVETLKPGGFF 231

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQGG+ +D+L  LK +F+KV H KP ASR+ES E F++A GF+
Sbjct: 232 IAKVFQGGSDSDLLNFLKANFEKVRHFKPDASRSESAETFVVAMGFK 278


>gi|149909287|ref|ZP_01897943.1| ribosomal RNA large subunit methyltransferase J [Moritella sp.
           PE36]
 gi|149807604|gb|EDM67552.1| ribosomal RNA large subunit methyltransferase J [Moritella sp.
           PE36]
          Length = 214

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 84/210 (40%), Positives = 122/210 (58%), Gaps = 4/210 (1%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K  + +GSS++WL  H ND YV+ A+ +G R+R+ +KL +I  K ++LQ    IVDLG++
Sbjct: 7   KKSTQKGSSKNWLLEHHNDKYVKDAKKQGLRSRATFKLEEIQAKDKLLQPGMNIVDLGAA 66

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PG WSQ A +  G   +  RV+A DIL M+PI GV F + DF D      +   +G G  
Sbjct: 67  PGGWSQFAVKHLG---DKGRVIACDILPMDPIAGVDFLQGDFRDEKVLSALLAKVGDGKI 123

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+V+SDMA    G+  +D   +M L E A     E+L   G F+VK FQG      +  +
Sbjct: 124 DVVVSDMAPNMSGNIGVDQPASMYLVELALEMCREVLKPNGSFVVKVFQGEGFEQYMKDV 183

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  F  V   KP +SRA S E+F++AKG++
Sbjct: 184 RSMFNVVKTRKPDSSRARSREVFIVAKGYK 213


>gi|34499253|ref|NP_903468.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
 gi|81654487|sp|Q7NRI3|RLME_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|34105104|gb|AAQ61460.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
          Length = 205

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 126/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS +WL  H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 3   RSKSSNNWLQEHVNDQYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSTPGSW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAARI G      +V A+DILDM+P+ GV F + DF +        Q + G   DLV+
Sbjct: 63  SQVAARIVGEKG---KVFALDILDMDPVPGVDFIQGDFREEAVLREFEQLLDGRALDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID  R+  LCE A  FA + L  GG FLVK FQG      L  +++ F
Sbjct: 120 SDMAPNMSGMSAIDQARSFLLCELALEFARDHLKPGGHFLVKVFQGSDFQPYLKAMRELF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            +V+  KP ASR  S E++LL KG R
Sbjct: 180 DEVVTRKPKASRDRSSEIYLLGKGRR 205


>gi|113969362|ref|YP_733155.1| 23S rRNA methyltransferase J [Shewanella sp. MR-4]
 gi|117919471|ref|YP_868663.1| 23S rRNA methyltransferase J [Shewanella sp. ANA-3]
 gi|123325253|sp|Q0HLG9|RLME_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143461679|sp|A0KTY8|RLME_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|113884046|gb|ABI38098.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. MR-4]
 gi|117611803|gb|ABK47257.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. ANA-3]
          Length = 209

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL ++ EK Q+++    +VDLG+
Sbjct: 1   MSGKKRTASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDQLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ+A ++TG   +  +V+A DIL M+PI+GV F + DF +    E +   +G   
Sbjct: 61  APGGWSQIAVKLTG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K  F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VKDAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|103488231|ref|YP_617792.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingopyxis alaskensis
           RB2256]
 gi|123379512|sp|Q1GPG3|RLME_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|98978308|gb|ABF54459.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingopyxis alaskensis
           RB2256]
          Length = 230

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 101/215 (46%), Positives = 140/215 (65%), Gaps = 5/215 (2%)

Query: 13  LTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
           L  +VK    +  SS  WL R +NDPYV+RAQ EG+R+R+AYKL++++EK  +L+ +R +
Sbjct: 14  LHVRVKTAKRRSVSSTRWLQRQLNDPYVRRAQAEGYRSRAAYKLIELDEKFGLLKKSRAV 73

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG +PG WSQV  +         RV  ID+L  EPI GV   + DF+D  + + +  A
Sbjct: 74  VDLGIAPGGWSQVVRKANP----RARVAGIDLLPCEPIEGVAILEMDFMDDAAPDALIAA 129

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +GG PDLV+SDMA  T+GH + DHLRT+ L E A  FA+  L  GG F+ K F GG   +
Sbjct: 130 LGGAPDLVISDMAANTVGHPQTDHLRTIGLAETAADFAVRNLLPGGAFVAKVFAGGADRE 189

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L LLK+HF  V H KP ASR  S E++++A+GF+
Sbjct: 190 LLTLLKRHFTTVKHAKPPASRKGSPELYVIAQGFK 224


>gi|304321737|ref|YP_003855380.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300639|gb|ADM10238.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 244

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 110/217 (50%), Positives = 143/217 (65%), Gaps = 4/217 (1%)

Query: 11  RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R LT+KVK  R  + SS+ WL R +NDPYV RA+ EG+R+R+AYKLL+++EK  +L+   
Sbjct: 24  RELTEKVKTARGRKISSKLWLERQLNDPYVARARAEGFRSRAAYKLLELDEKFGLLRPGA 83

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R+VDLG++PG WSQVA R         +VV ID LDM P+ GV   K DFLD D+   +R
Sbjct: 84  RVVDLGAAPGGWSQVAGRAVLPGG---QVVGIDYLDMPPLDGVTLLKADFLDEDTPGRLR 140

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
             +GG   LVLSDMA PT GH+  DHLR ++L EAA  FA  +L  GG ++ K  QGG+ 
Sbjct: 141 AVLGGPAHLVLSDMAAPTTGHKSTDHLRIVALAEAALDFAETVLAPGGGYVAKVLQGGSE 200

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +L  LK  F  V H KP ASRAES EM+++A G+R
Sbjct: 201 KSLLDRLKADFTDVAHAKPSASRAESAEMYVVATGYR 237


>gi|85374883|ref|YP_458945.1| 23S rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|122543835|sp|Q2N843|RLME_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84787966|gb|ABC64148.1| 23S rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 220

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 102/221 (46%), Positives = 145/221 (65%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S S +   ++VK  R    SS  WL R +NDPYV++A+ +G+R+R+AYKL++++ K  IL
Sbjct: 2   SRSGKDPGKRVKTARKRSASSTRWLERQLNDPYVKQAKADGYRSRAAYKLIELDGKFGIL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   R+VDLG +PG W+QV  ++         +V ID+L+ EPI GV   + DF+  ++ 
Sbjct: 62  KGASRVVDLGIAPGGWAQVVRKVRPKAG----IVGIDLLETEPIEGVTILQMDFMADEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             +  A+ G PDLV+SDMA  T+GH++ DHLRTM L EAA +FA+E L  GG FL K   
Sbjct: 118 AGLEAALDGPPDLVMSDMAANTVGHKQTDHLRTMGLVEAAAWFAIETLEEGGTFLAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT ND+L LLK HF+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDNDLLKLLKSHFKTVKHAKPPASRKGSSEWYVVAQGFK 218


>gi|192359469|ref|YP_001983134.1| ribosomal RNA large subunit J [Cellvibrio japonicus Ueda107]
 gi|226703290|sp|B3PLQ4|RLME_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|190685634|gb|ACE83312.1| ribosomal RNA large subunit J [Cellvibrio japonicus Ueda107]
          Length = 211

 Score =  264 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 4/205 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H +D YV+++  +G+R R++YKLL++N+K ++++    +VDLG++PG W
Sbjct: 3   RSKSSNRWLEEHFSDQYVKKSHADGYRTRASYKLLELNDKDRLIRPGMLVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVA +  G    + RVVA DIL M+ + GV+F + DF D   +  I  AIG  P DLV+
Sbjct: 63  SQVAGQQVG---THGRVVASDILPMDTLEGVEFIQGDFTDDSVFNQILLAIGDTPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  + M L E A   A  +L   G+F+ K F G   +  L  LK  F
Sbjct: 120 SDMAPNMSGINAVDQPQAMYLVELALDMAKRVLKPQGNFVAKVFHGEGYDQYLKDLKGCF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           +KV+  KP ASR+ S E++++ KGF
Sbjct: 180 EKVVIRKPDASRSRSREVYVVGKGF 204


>gi|226946314|ref|YP_002801387.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
           vinelandii DJ]
 gi|259494558|sp|C1DFL6|RLME_AZOVD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226721241|gb|ACO80412.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
           vinelandii DJ]
          Length = 207

 Score =  264 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 128/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSHRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL M+ I  V F + DF D   +  + +AIG  P DLV+
Sbjct: 63  SQVTSRLIG---DRGRLIASDILPMDSIPDVTFIQGDFTDDAVFALLLEAIGEQPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G +  D  R M LCE A   A  +L  GGDFL+K FQG   +  L  +++ F
Sbjct: 120 SDMAPNMSGVKAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYLRQVREGF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|92118062|ref|YP_577791.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter hamburgensis
           X14]
 gi|122417455|sp|Q1QKB6|RLME_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91800956|gb|ABE63331.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 228

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/226 (46%), Positives = 147/226 (65%), Gaps = 3/226 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K      R  +T K   +  + SS+ WL R +NDPYV +A+ +GWR+R+AYKL+++++
Sbjct: 1   MAKDTTGRLR--VTVKTGGK-RKLSSKLWLERQLNDPYVAQAKRDGWRSRAAYKLIEMDD 57

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K+  L+    +VDLG++PG WSQVAAR  G+     +VVAID+L+M  I+GV F + DFL
Sbjct: 58  KYHFLKPGLAVVDLGAAPGGWSQVAARRVGAVDGKGKVVAIDLLEMPEIVGVTFARLDFL 117

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D D+ E +   + G  D+VLSDMA  T GHRK D LR + L E+A  FA ++L  GG F+
Sbjct: 118 DADAPEKLIAMMEGGADIVLSDMAANTTGHRKTDQLRIIGLVESAAAFAADVLRPGGTFI 177

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ G   D+L  LK+ F+ V HVKP +SR +S E +++A GFR
Sbjct: 178 AKVFQSGADADLLVQLKRDFRTVRHVKPASSRQDSSERYVMATGFR 223


>gi|148557611|ref|YP_001265193.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas wittichii
           RW1]
 gi|189040343|sp|A5VFI9|RLME_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|148502801|gb|ABQ71055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas wittichii
           RW1]
          Length = 229

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/221 (41%), Positives = 142/221 (64%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S +  G  Q++K  +    SS  W+ R +NDPYV++AQ EG+R+R+AYKL++++E+   L
Sbjct: 2   SRAGNGGRQRIKTAKGRSASSIKWIQRQLNDPYVRKAQAEGYRSRAAYKLIELDERFHFL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R++DLG +PG W+QV  R+    A    +V ID+L  +PI G    + DF+  ++ 
Sbjct: 62  RGAKRVIDLGIAPGGWTQVVRRVCPQAA----IVGIDLLPTDPIDGAIILQMDFMSDEAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + +A+GG  D+VLSDMA  T+GH++ DHLRTM+L EA   FA E+L  GG ++ K   
Sbjct: 118 AQLAEALGGPADIVLSDMAANTVGHQQTDHLRTMALVEAGCLFASEVLRPGGTYVAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG  + ++  LK+ F  V H KP ASR +S E +++A+GF+
Sbjct: 178 GGADHGLVAELKRLFTTVKHAKPPASRKDSSEWYVIAQGFK 218


>gi|299133659|ref|ZP_07026853.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
 gi|298591495|gb|EFI51696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
          Length = 226

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 146/227 (64%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         L   VK+    + SS+ WL R +NDPYV +A+ +G+R+R+AYKL +++
Sbjct: 1   MAKDTTGR----LHVTVKSGGKRKLSSKLWLERQLNDPYVMQAKRDGYRSRAAYKLREMD 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K+  L+  + +VDLG++PG WSQ+AA+  G+ A   +V+AID+L+M  I GV F + DF
Sbjct: 57  DKYHFLKQGQAVVDLGAAPGGWSQIAAKRVGAEAGKGKVIAIDLLEMGEIPGVTFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L  D+ E +R  +GG  D+V+SDMA  T GHRK D LR + L E+A  FA E+LN GG F
Sbjct: 117 LADDAPEKLRAMLGGGADIVMSDMAANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGVF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K FQ G    +   LK++F  V HVKP ASR +S E ++LA GFR
Sbjct: 177 LAKVFQSGADATLQNELKRNFATVRHVKPAASRQDSSERYVLAMGFR 223


>gi|188582866|ref|YP_001926311.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium populi
           BJ001]
 gi|179346364|gb|ACB81776.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium populi
           BJ001]
          Length = 244

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/214 (52%), Positives = 150/214 (70%), Gaps = 4/214 (1%)

Query: 14  TQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
            Q+VK  R    S + WL R +NDPYV RA+ EG+R+R+A+KL++I+E+ ++L+  +RIV
Sbjct: 22  KQRVKTGRGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPAQRIV 81

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQVAA+I G +    R+V ID+LD+EP+ G  F   DFLD  + E + + +
Sbjct: 82  DLGAAPGGWSQVAAKIVGESG---RIVGIDLLDVEPMAGATFITLDFLDDSAPERLTELL 138

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  DLVLSDMA  T GH+K DHLRT+ L E+A  FA E+L  GG FL K FQGGT   +
Sbjct: 139 GGKADLVLSDMAANTTGHKKTDHLRTIGLAESAAAFAAEILAPGGAFLAKVFQGGTEGQL 198

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 199 LADLKRDFATVRHVKPAASRADSSELYVLATGFR 232


>gi|85709359|ref|ZP_01040424.1| 23S rRNA methylase [Erythrobacter sp. NAP1]
 gi|85688069|gb|EAQ28073.1| 23S rRNA methylase [Erythrobacter sp. NAP1]
          Length = 221

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/221 (47%), Positives = 149/221 (67%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           + S R   ++VK  +    SS  WL R +NDPYV++A+ +G+R+R+AYKLL+++EK  +L
Sbjct: 2   ARSGRDPDKRVKTAKKRTESSTRWLQRQLNDPYVKQAKADGYRSRAAYKLLELDEKFSLL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  RR+VDLG +PG WSQV      + A    +V ID+L  EPI GV  F+ DF+D  + 
Sbjct: 62  RGTRRVVDLGIAPGGWSQVVR----AKAPKAEIVGIDLLPTEPIEGVTIFEMDFMDDAAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E +  A+GG PDLV+SDMA  T+GH++ DHLRTM+L EA  +FA+E L  GG F+ K   
Sbjct: 118 EKLESALGGPPDLVISDMAANTVGHKQTDHLRTMALVEAGAWFAVETLEKGGAFVAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  ++L LLK+HF+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDAELLKLLKRHFKTVKHAKPPASRKGSSEWYVVAQGFK 218


>gi|85715667|ref|ZP_01046647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
 gi|85697606|gb|EAQ35483.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
          Length = 226

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/226 (46%), Positives = 150/226 (66%), Gaps = 3/226 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K   ++ R  +T +   R  + SS+ WL R +NDPYV +A+ EGWR+R+A+KL+++++
Sbjct: 1   MAK--DTTGRLHVTVRSGGR-RKLSSKLWLERQLNDPYVAQAKREGWRSRAAFKLIEMDD 57

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KH+ L+    +VDLG++PG WSQVAA+  G+     +V+AID+L+M  I+GV F + DFL
Sbjct: 58  KHRFLKPAMTVVDLGAAPGGWSQVAAQRVGATEGKGKVIAIDLLEMPEIVGVTFARLDFL 117

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D ++ + +   +GG  D+VLSDMA  T GHRK D LR + L E+A  FA ++L  GG F+
Sbjct: 118 DNNAPDKLLAMMGGAADVVLSDMAANTTGHRKTDQLRMVGLVESAAAFAADVLRPGGTFI 177

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ G    +L  LK+ FQ V HVKP ASR +S E ++LA GFR
Sbjct: 178 AKVFQSGADAGLLVQLKRDFQTVRHVKPAASRQDSSERYVLATGFR 223


>gi|183600359|ref|ZP_02961852.1| hypothetical protein PROSTU_03922 [Providencia stuartii ATCC 25827]
 gi|188020150|gb|EDU58190.1| hypothetical protein PROSTU_03922 [Providencia stuartii ATCC 25827]
          Length = 209

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G N    RV+A DIL M+PI+GV F + DF +      + + +G   
Sbjct: 61  APGGWSQYVVSQIGHNG---RVIACDILPMDPIVGVDFLQGDFREEAVLAALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A      +L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDEYLRD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|209885593|ref|YP_002289450.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
           carboxidovorans OM5]
 gi|226705298|sp|B6JHM9|RLME_OLICO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|209873789|gb|ACI93585.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
           carboxidovorans OM5]
          Length = 225

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 146/227 (64%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         L   VK+    + SS+ WL R +NDPYV +A+ +G+R+R+AYKL +++
Sbjct: 1   MAKDTTGR----LHVTVKSGGKRKLSSKLWLERQLNDPYVAQAKRDGFRSRAAYKLREMD 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +K+  L+  + +VDLG++PG WSQ+AA+  G+ A   +V+AID+L+M  I GV F + DF
Sbjct: 57  DKYHFLKQGQAVVDLGAAPGGWSQIAAKRVGAEAGRGKVIAIDLLEMGEIPGVTFAQLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           L  D+ E +R  +GG  D+V+SDMA  T GHRK D LR + L E+A  FA E+LN GG F
Sbjct: 117 LSDDAPEKLRAMLGGGADIVMSDMAANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGTF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K FQ G    +   LK++F  V HVKP ASR +S E ++LA GFR
Sbjct: 177 LAKVFQSGADATLQAELKRNFATVRHVKPAASRQDSSERYVLAMGFR 223


>gi|189040697|sp|B0T8J6|RLME_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 226

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/229 (40%), Positives = 142/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 1   MVKPPAGGNDGGRAKPARLKTAFGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K++  +   +++DLG +PG W Q+A          T +V +D+L ++P+      + 
Sbjct: 61  IDDKYRFFKKGAKVIDLGCAPGGWLQMATER-----GVTDIVGVDLLPVDPVAPAHILEM 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D      + + +GG PDLV+SDMA  T+GHR+ DHLR + L E    FA+E+L  GG
Sbjct: 116 DFTDPACPPKMLELLGGAPDLVMSDMAPNTVGHRETDHLRIVGLIEIGADFAIEVLKPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T  ++  LKKHF KV+H KP ASR++S E+FL+A GF+
Sbjct: 176 AFVAKAFQGGETAAVIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFK 224


>gi|83942234|ref|ZP_00954695.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           EE-36]
 gi|83955469|ref|ZP_00964100.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           NAS-14.1]
 gi|83840113|gb|EAP79288.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           NAS-14.1]
 gi|83846327|gb|EAP84203.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
           EE-36]
          Length = 262

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/230 (41%), Positives = 147/230 (63%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R L  KVK+ R  + SS  WL R +NDPYV+RA  EG+R R+AYK++++++K
Sbjct: 23  KNTSGRGQRDLKVKVKSARGRKLSSTRWLQRQLNDPYVKRANAEGYRGRAAYKIMELDDK 82

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKFFK 116
           ++ L    R+VDLG++PG W QVA +           N   ++ ID+ +MEPI G +  +
Sbjct: 83  YRFLVPGARVVDLGAAPGGWCQVAVKRCNVLGEKKGKNVGTILGIDLQEMEPIAGCELHQ 142

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF++ D+ E ++  +GG  D+V+SDMA  + GH++ DH R ++LCEAA +FA ++L  G
Sbjct: 143 LDFMEDDADEIVKGWLGGKADVVMSDMAASSSGHKQTDHNRIIALCEAAAYFAFDVLEDG 202

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   D+  LLK+ F KV ++KP ASR++S E F++A GF+
Sbjct: 203 GTFVAKVLAGGAEGDLQQLLKRRFTKVANIKPPASRSDSSEKFVVATGFK 252


>gi|326797289|ref|YP_004315109.1| ribosomal RNA large subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
 gi|326548053|gb|ADZ93273.1| Ribosomal RNA large subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
          Length = 206

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 133/206 (64%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL+ H+NDPYV++AQ++G+R+R++YKLL++N+K ++++    ++DLGS+PG W
Sbjct: 3   RSKSSNRWLDEHVNDPYVKQAQVDGYRSRASYKLLELNDKDKLIKPGNLVMDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQ+A+++ G+     +V+A DIL M+ + GV+F + DF +   ++ I  A+ G P D+V+
Sbjct: 63  SQIASKLVGNKG---KVIASDILPMDSLAGVEFIQGDFTEQSVFDEIMVAVNGAPVDVVV 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G    D   ++ L E A   A ++L   G F VK F G   +  +  ++KHF
Sbjct: 120 SDMAPNLSGIASSDQASSIYLVELALDMATQVLKPKGSFAVKVFHGEGYDAFVKEVRKHF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           Q V+  KP +SRA S E++L+ KGF+
Sbjct: 180 QTVVVRKPDSSRARSREVYLVGKGFK 205


>gi|170727902|ref|YP_001761928.1| 23S rRNA methyltransferase J [Shewanella woodyi ATCC 51908]
 gi|226705315|sp|B1KRR8|RLME_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|169813249|gb|ACA87833.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella woodyi ATCC
           51908]
          Length = 209

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G+R+R+A+K+ +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G N    +V+A DIL M+PI+GV F + DF +    + +   +G   
Sbjct: 61  APGGWSQVAVKLAGDNG---KVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG    + +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEYMKS 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SR  S E++L+A G++
Sbjct: 178 VREAFKTVKTRKPDSSRPRSREVYLVATGYK 208


>gi|84517387|ref|ZP_01004740.1| ribosomal RNA large subunit methyltransferase J [Loktanella
           vestfoldensis SKA53]
 gi|84508751|gb|EAQ05215.1| ribosomal RNA large subunit methyltransferase J [Loktanella
           vestfoldensis SKA53]
          Length = 243

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPG-----SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R L  KVK  R  + SS  WL R +NDPYV+RA+ +G+R R+AYK
Sbjct: 1   MAKKPTTKNTSGRGQRDLHVKVKTARGRKLSSTQWLQRQLNDPYVKRAKADGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPI 109
           +L++++K++ L    RIVDLG +PG W QVA +   +           V+ ID+ +++PI
Sbjct: 61  ILELDDKYRFLVPGARIVDLGCAPGGWLQVAVKRANALGERTSKAQGYVLGIDLQEVDPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G + ++ DF+  D+   +R  +GGN D+V+SDMA    GH++ DH R ++LCEAA  FA
Sbjct: 121 PGAEIYQLDFMADDADVQVRDWLGGNADVVMSDMAASASGHKQTDHNRIIALCEAAAHFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++LN GG F+ K   GG   D+  LLK  F+KV +VKP ASR++S E F++A GF+
Sbjct: 181 FDVLNEGGTFVAKVLAGGAEGDLQKLLKARFEKVANVKPPASRSDSSEKFVVATGFK 237


>gi|157376529|ref|YP_001475129.1| 23S rRNA methyltransferase J [Shewanella sediminis HAW-EB3]
 gi|189040340|sp|A8FYS8|RLME_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157318903|gb|ABV38001.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sediminis
           HAW-EB3]
          Length = 209

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G+R+R+A+K+ +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G N    +V+A DIL M+PI+GV F + DF +    + +   +G   
Sbjct: 61  APGGWSQVAVKLAGDNG---KVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG    + +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEYMKS 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VREAFKTVKTRKPDSSRARSREVYLVATGYK 208


>gi|163731318|ref|ZP_02138765.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter litoralis Och 149]
 gi|161394772|gb|EDQ19094.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter litoralis Och 149]
          Length = 240

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 148/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPG-----SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           MVK PG        +R L  KVK  R  + SS  WL R +NDPYV+RA+ EG+R R+AYK
Sbjct: 1   MVKKPGSQNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPI 109
           +L+++++ + L    R+VDLG +PG W QVA +   +           V+ +D+ +MEPI
Sbjct: 61  ILELDDRFRFLVPGARVVDLGCAPGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G   ++ DF+  D+ + +R  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGADLYQLDFMADDADQQVRAWMGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV ++KP ASR +S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQRFTKVSNIKPPASRQDSSEKFVVATGFR 237


>gi|268592832|ref|ZP_06127053.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rettgeri DSM 1131]
 gi|291311618|gb|EFE52071.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rettgeri DSM 1131]
          Length = 209

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQGDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G N    RV+A D+L M+PI+GV F + DF D      + + +G   
Sbjct: 61  APGGWSQYVVSQIGHNG---RVIACDLLPMDPIVGVDFLQGDFRDEAVLAALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A      +L  GG F+VK FQG   +D L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDDYLRD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|262369449|ref|ZP_06062777.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           johnsonii SH046]
 gi|262315517|gb|EEY96556.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           johnsonii SH046]
          Length = 216

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/216 (39%), Positives = 137/216 (63%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++D +V++AQ EG+RAR+AYKLL+I EK+ I++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDHFVKKAQKEGYRARAAYKLLEIQEKYNIIRPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   VVA DIL+M+ +  V F + DF + + ++ +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DRGLVVASDILEMDALPDVTFLQGDFREQEVFDKLLNIL 117

Query: 133 -GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G++ +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 DGRKVDVVISDMAPNTSGNKAVDQPRQIYLCELAIDFATKVLGPNGQFVVKVFQGTGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +  +F  +  VKP ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDNFDVLKTVKPAASRARSKEVFLVGQGRKK 213


>gi|157825346|ref|YP_001493066.1| ribosomal RNA large subunit methyltransferase J [Rickettsia akari
           str. Hartford]
 gi|189040325|sp|A8GMD3|RLME_RICAH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157799304|gb|ABV74558.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia akari
           str. Hartford]
          Length = 227

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 154/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A++EG+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSGNWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N+ N ++++ID+L++EPI+GV+F + DF + ++
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNSLNNKIISIDLLEIEPIIGVEFLQKDFFEENT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I Q + G  D+V+SDMA  T GH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQVLDGKADIVMSDMASNTTGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K  F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAENELLNKVKCEFKTVKHFKPSSSRSESTEIYLVAINKK 227


>gi|295689972|ref|YP_003593665.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter segnis ATCC
           21756]
 gi|295431875|gb|ADG11047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter segnis ATCC
           21756]
          Length = 235

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   S  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 10  MVKPPTGGSEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 69

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+EK    +   R++DLG +PG W Q+A          T +  ID+L ++P+      + 
Sbjct: 70  IDEKFHFFRKGARVIDLGCAPGGWLQIAVER-----GVTDLAGIDLLPVDPVAPAHILEM 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF    + E + + +GG PDLV+SDMA  T+GHR+ DHLR + L E A  FA+++L  GG
Sbjct: 125 DFTADGAPEKLMEILGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAVDVLKPGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T +++  LK+HF KV H KP ASR +S E+FL+A GF+
Sbjct: 185 AFVAKAFQGGETAEVIGKLKRHFTKVQHFKPKASRQDSSEVFLVATGFK 233


>gi|325265685|ref|ZP_08132374.1| ribosomal RNA large subunit methyltransferase J [Kingella
           denitrificans ATCC 33394]
 gi|324982816|gb|EGC18439.1| ribosomal RNA large subunit methyltransferase J [Kingella
           denitrificans ATCC 33394]
          Length = 213

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  W++ H+NDPYVQRAQ +G+RAR+AYKLL+INEK ++++S   + DLGS+PGSW
Sbjct: 11  RSKSSPAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKSGTLLADLGSAPGSW 70

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G +    +V A+DIL ME I GV F + DF + +        +G  P DLV+
Sbjct: 71  SQVAAKLVGPSG---QVFALDILPMERIDGVDFIQGDFREDEVLRQFENLLGNRPLDLVI 127

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA   L  GG FL+K FQG    + L  ++  F
Sbjct: 128 CDMAPNMSGNAVTDQARSYYLCELALDFARNHLKPGGSFLIKVFQGAGYQEYLAEMRSLF 187

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           Q V   KP ASR  S E++LL K  R
Sbjct: 188 QTVQTRKPDASRNRSSEIYLLGKNKR 213


>gi|86750307|ref|YP_486803.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris HaA2]
 gi|123292402|sp|Q2IV68|RLME_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|86573335|gb|ABD07892.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
           palustris HaA2]
          Length = 236

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 151/227 (66%), Gaps = 4/227 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K   ++ R  +T K   R  + SS+ WL+R +NDPYV +A+ +G+R+R+AYKL +I++
Sbjct: 1   MAK--DTTGRMRVTVKSGGR-MKLSSKLWLDRQLNDPYVAQAKRDGYRSRAAYKLTEIDD 57

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K+  L+S + +VDLG++PG WSQVAA+  GS     +++AID+L+M  I GV F + DFL
Sbjct: 58  KYHFLKSGQAVVDLGAAPGGWSQVAAKRIGSANGRGKLIAIDLLEMGEIPGVTFAQLDFL 117

Query: 121 DLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           D  + + +R+ +GG+  D+V+SDMA  T GHRK D LR + L E+A  FA E+L  GG F
Sbjct: 118 DSAAPDKLREMLGGDGADVVMSDMAGNTTGHRKTDQLRIVGLVESAAQFASEVLKPGGIF 177

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQ G    ++  LK+ F  V HVKP ASR +S E ++LA GFR
Sbjct: 178 VAKVFQSGADATLMNQLKRDFATVKHVKPAASRKDSSERYVLAMGFR 224


>gi|212710001|ref|ZP_03318129.1| hypothetical protein PROVALCAL_01052 [Providencia alcalifaciens DSM
           30120]
 gi|212687410|gb|EEB46938.1| hypothetical protein PROVALCAL_01052 [Providencia alcalifaciens DSM
           30120]
          Length = 209

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G N    R++A D+L M+PI+GV F + DF D      + + +G   
Sbjct: 61  APGGWSQYVVGQIGHNG---RIIACDLLPMDPIVGVDFLQGDFRDDAVLAALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A      +L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDEYLRD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|197287223|ref|YP_002153095.1| 23S rRNA methyltransferase J [Proteus mirabilis HI4320]
 gi|227357082|ref|ZP_03841452.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Proteus mirabilis ATCC 29906]
 gi|226705299|sp|B4F2B2|RLME_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|194684710|emb|CAR46685.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Proteus mirabilis HI4320]
 gi|227162774|gb|EEI47737.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Proteus mirabilis ATCC 29906]
          Length = 209

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+A+ +G+R+R+ +KL +I +   I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAKKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   +  G+     R++A D+L M+PI+GV F + DF D    + +   +G   
Sbjct: 61  APGGWSQYVVQQLGNKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDNK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPGGSFIVKVFQGEGFDEYLGQ 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDASRSRSREVYIVATGRK 208


>gi|167646174|ref|YP_001683837.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter sp. K31]
 gi|167348604|gb|ABZ71339.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter sp. K31]
          Length = 235

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/229 (40%), Positives = 142/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 10  MVKPPAGGNDGGRAKPARLKTAFGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 69

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K++  +   +++DLG +PG W Q+A          T +V +D+L ++P+      + 
Sbjct: 70  IDDKYRFFKKGAKVIDLGCAPGGWLQMATER-----GVTDIVGVDLLPVDPVAPAHILEM 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D      + + +GG PDLV+SDMA  T+GHR+ DHLR + L E    FA+E+L  GG
Sbjct: 125 DFTDPACPPKMLELLGGAPDLVMSDMAPNTVGHRETDHLRIVGLIEIGADFAIEVLKPGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T  ++  LKKHF KV+H KP ASR++S E+FL+A GF+
Sbjct: 185 AFVAKAFQGGETAAVIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFK 233


>gi|126737830|ref|ZP_01753560.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           SK209-2-6]
 gi|126721223|gb|EBA17927.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           SK209-2-6]
          Length = 238

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 149/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKTPTGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVRRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPI 109
           ++++++K + L    R+VDLG +PG WSQVA +        S      ++ +D+ ++EP+
Sbjct: 61  IMELDDKFRFLVPGARVVDLGCAPGGWSQVAVKRINALGERSGKAIGTILGVDLQEIEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F + DF+D  + E ++  +GGN D+V+SDMA  + GH++ DHLR MSLCE A +F+
Sbjct: 121 AGAEFHQLDFMDEGADEQVKTWLGGNADVVMSDMAAASSGHKQTDHLRIMSLCETAAYFS 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV +VKP ASR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQKFTKVANVKPPASRSDSSEKFVVAMGFR 237


>gi|88705677|ref|ZP_01103387.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
           litoralis KT71]
 gi|88700190|gb|EAQ97299.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
           litoralis KT71]
          Length = 206

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ WL  H +DPYVQ+AQ +G+R+R+ YKLL++ E+  I++    ++DLGS+PG 
Sbjct: 3   KKSSSSKAWLREHRDDPYVQQAQRDGYRSRACYKLLELQERDNIIRPGMTVLDLGSAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVAA + G      +V+A DIL M+PI GV F + DF +   +E I   +G    DLV
Sbjct: 63  WSQVAAELVGKRG---QVIASDILPMDPIDGVNFVQGDFTEDQVFEQILAEMGDKSADLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  +++ L E A   A  +L  GG F+ K FQG   +++    ++ 
Sbjct: 120 ISDMAPNMSGVSAVDQPKSIYLVELALDMATRVLVPGGAFITKVFQGEGFDELFRATREQ 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV+  KP ASR  S E++L+A+G R
Sbjct: 180 FDKVLTRKPSASRPRSREVYLVARGRR 206


>gi|167625067|ref|YP_001675361.1| 23S rRNA methyltransferase J [Shewanella halifaxensis HAW-EB4]
 gi|189040337|sp|B0TQB0|RLME_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|167355089|gb|ABZ77702.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella halifaxensis
           HAW-EB4]
          Length = 209

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+K+ +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWMQEHFDDHYVKLAQKRGLRSRAAFKIEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G   
Sbjct: 61  APGGWSQVAVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SR  S E++L+A G++
Sbjct: 178 VKEAFKTVKTRKPDSSRPRSREVYLVATGYK 208


>gi|253991509|ref|YP_003042865.1| 23S rRNA methyltransferase J [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638387|emb|CAR67009.1| ribosomal rna large subunit methyltransferase j (ec 2.1.1.-) (rrn
           (uridine-2'-o-)-methyltransferase) (23s rrna m2u255
           methyltransferase) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782959|emb|CAQ86124.1| ribosomal RNA large subunit methyltransferase [Photorhabdus
           asymbiotica]
          Length = 209

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A      N    RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVSQINENG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDNK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPGGSFIVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTNVKIRKPDASRARSREVYIVATGRK 208


>gi|110680244|ref|YP_683251.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter denitrificans OCh 114]
 gi|123361756|sp|Q164M8|RLME_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|109456360|gb|ABG32565.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter denitrificans OCh 114]
          Length = 240

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPG-----SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K PG        +R L  KVK  R  + SS  WL R +NDPYV+RA+ EG+R R+AYK
Sbjct: 1   MAKKPGSQNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPI 109
           +L+++++ + L    R+VDLG +PG W QVA +   +           V+ +D+ +MEPI
Sbjct: 61  ILELDDRFRFLVPGARVVDLGCAPGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G   ++ DF+  D+ E +R  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGATLYQLDFMADDADEQVRVWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV ++KP ASR +S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQRFAKVANIKPPASRQDSSEKFVVATGFR 237


>gi|163746305|ref|ZP_02153663.1| ribosomal RNA large subunit methyltransferase J [Oceanibulbus
           indolifex HEL-45]
 gi|161380190|gb|EDQ04601.1| ribosomal RNA large subunit methyltransferase J [Oceanibulbus
           indolifex HEL-45]
          Length = 241

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPP-----GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R L  KVK+ R  + SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MTKTPDGKNTSGRGQRDLKVKVKSARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPI 109
           ++++++K + L    RIVDLG++PG W QVA +        S      ++ +D+ +MEPI
Sbjct: 61  IMELDDKFRFLVPGARIVDLGAAPGGWCQVAVKRCNVLGERSGKQVGTILGVDLQEMEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF++ D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGCELHQLDFMEDDADLKVKEWLGGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK  F KV ++KP ASRA+S E F++A GF+
Sbjct: 181 FDVLEDGGTFVAKVLAGGAEGELQKLLKMRFTKVANIKPPASRADSSEKFVVATGFK 237


>gi|91792359|ref|YP_562010.1| 23S rRNA methyltransferase J [Shewanella denitrificans OS217]
 gi|123357037|sp|Q12QI9|RLME_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91714361|gb|ABE54287.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella denitrificans
           OS217]
          Length = 209

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL +I +K  +++    +VDLG+
Sbjct: 1   MSAKKRTASSARWMQEHFDDHYVKLAQKRGLRSRAAFKLEEIQQKDHLIRQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVA ++ G N    +V+A DIL M+PI+GV F + DF + +    +   +G   
Sbjct: 61  APGGWSQVAVKLAGDNG---KVIACDILPMDPIVGVDFLQGDFREENVLNALLDRVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGSDGVDQPRAMYLVELALEMCHQVLAPNGCFAVKVFQGEGFDEYIKS 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VKQAFKTVKTRKPDSSRARSREVYLVATGYK 208


>gi|261345168|ref|ZP_05972812.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rustigianii DSM 4541]
 gi|282566860|gb|EFB72395.1| ribosomal RNA large subunit methyltransferase J [Providencia
           rustigianii DSM 4541]
          Length = 209

 Score =  262 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G   ++ RV+A D+L M+PI+GV F + DF D      + + +G   
Sbjct: 61  APGGWSQYVVSQIG---HHGRVIACDLLPMDPIVGVDFLQGDFRDEAVLAALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G  ++D  R+M L E A      +L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPEVDIPRSMYLVELALDMCRAVLAPGGSFIVKVFQGEGFDEYLRD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPESSRARSREVYIVATGLK 208


>gi|212634066|ref|YP_002310591.1| 23S rRNA methyltransferase J [Shewanella piezotolerans WP3]
 gi|226705314|sp|B8CKG5|RLME_SHEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|212555550|gb|ACJ28004.1| Ribosomal RNA large subunit methyltransferase J [Shewanella
           piezotolerans WP3]
          Length = 209

 Score =  262 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G+R+R+A+K+ +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G   
Sbjct: 61  APGGWSQVAVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SR  S E++L+A G++
Sbjct: 178 VKEAFKTVKTRKPDSSRPRSREVYLVATGYK 208


>gi|329115331|ref|ZP_08244085.1| Ribosomal RNA large subunit methyltransferase E [Acetobacter
           pomorum DM001]
 gi|326695310|gb|EGE46997.1| Ribosomal RNA large subunit methyltransferase E [Acetobacter
           pomorum DM001]
          Length = 263

 Score =  262 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 131/207 (63%), Gaps = 5/207 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R    + + WL+R +NDPYVQ A  +GWR+R+A+KL++++++  +++   RIVDLG++PG
Sbjct: 53  RGRTTAQQRWLSRQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIRPGMRIVDLGAAPG 112

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
            W+QV  +         +VV +D+L +EP+ G +  + DF D +    +   +GG  DLV
Sbjct: 113 GWTQVLVKR-----GAAQVVGVDLLPVEPVTGAEIIEGDFTDPEMDARLISMLGGKADLV 167

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA  T GH   DH+R + L E A  FA ++L  GG F+ K FQGG+   +L  +K+ 
Sbjct: 168 VSDMAPNTTGHAPTDHVRIIGLAEEALHFAFDILAEGGGFVAKVFQGGSEKAMLNTMKQA 227

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F +V H KP ASR +S E++++A GFR
Sbjct: 228 FTQVRHAKPPASRKDSSELYVVATGFR 254


>gi|99081023|ref|YP_613177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
 gi|123077672|sp|Q1GHF1|RLME_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|99037303|gb|ABF63915.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
          Length = 238

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 150/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 1   MAKKPTGKNTSGRGQRDLTVKVKTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT-----GSNANNTRVVAIDILDMEPI 109
           ++++++K++ L    R+VDLG +PG W+QVA          S     R + ID+ ++EP+
Sbjct: 61  IMELDDKYRFLVPGARVVDLGCAPGGWAQVAVPRINALGEKSGKAIGRFIGIDLQEVEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR MSLCE A +FA
Sbjct: 121 AGAEFHQLDFMDEGADDQVKEWLGGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F+ V +VKP +SRA+S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQKFKSVANVKPPSSRADSSEKFVVATGFR 237


>gi|120597892|ref|YP_962466.1| 23S rRNA methyltransferase J [Shewanella sp. W3-18-1]
 gi|146293936|ref|YP_001184360.1| 23S rRNA methyltransferase J [Shewanella putrefaciens CN-32]
 gi|143461753|sp|A1RGW7|RLME_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040339|sp|A4Y9C8|RLME_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120557985|gb|ABM23912.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. W3-18-1]
 gi|145565626|gb|ABP76561.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
           CN-32]
 gi|319427313|gb|ADV55387.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
           200]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL ++ +K Q+++    +VDLG+
Sbjct: 1   MSGKKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    E +   +G   
Sbjct: 61  APGGWSQVAVKLVG---DRGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VKEAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|94496284|ref|ZP_01302862.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. SKA58]
 gi|94424463|gb|EAT09486.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. SKA58]
          Length = 224

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/221 (46%), Positives = 148/221 (66%), Gaps = 6/221 (2%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G+ + +   +  K R+ Q  S  WL RH+NDPYV++A+ EGWR+R+A+KL++++EK   +
Sbjct: 3   GAGAGKVRVKTAKGRTAQ--SVRWLERHLNDPYVKKAKAEGWRSRAAFKLIELDEKFHFV 60

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + +R +VDLG +PG W+QV  ++    A    VV ID+L  +PI GV  F+ DF+D  + 
Sbjct: 61  KGSRAVVDLGVAPGGWAQVVRKMAPKAA----VVGIDLLPTDPIPGVTLFEMDFMDDKAP 116

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           + +R+A+G  PDLV+SDMA  T+GH   DHLRTM L EAA  FA+E L  GG F+ K F 
Sbjct: 117 DLLREALGQEPDLVISDMAANTVGHAPTDHLRTMGLVEAAAQFAVENLRKGGTFVAKVFA 176

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT   +L +LKKHF  + H KP ASR  SVE +++A+GF+
Sbjct: 177 GGTDAQLLAVLKKHFTTIKHAKPPASRKGSVEWYVVAQGFK 217


>gi|258542575|ref|YP_003188008.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633653|dbj|BAH99628.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636712|dbj|BAI02681.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639765|dbj|BAI05727.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642821|dbj|BAI08776.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645876|dbj|BAI11824.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648929|dbj|BAI14870.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651916|dbj|BAI17850.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654973|dbj|BAI20900.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 263

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 132/207 (63%), Gaps = 5/207 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R    + + WL+R +NDPYVQ A  +GWR+R+A+KL++++++  +++   RIVDLG++PG
Sbjct: 53  RGRTTAQQRWLSRQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIRPGMRIVDLGAAPG 112

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
            W+QV  +   S     +VV +D+L +EP+ G +  + DF D +    +   +GG  DLV
Sbjct: 113 GWTQVLVKRGAS-----QVVGVDLLPVEPVAGAEIIEGDFTDPEMDARLISMLGGKADLV 167

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA  T GH   DH+R + L E A  FA ++L  GG F+ K FQGG+   +L  +K+ 
Sbjct: 168 VSDMAPNTTGHAPTDHVRIIGLAEEALHFAFDILAEGGGFVAKVFQGGSEKAMLNTMKQA 227

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F +V H KP ASR +S E++++A GFR
Sbjct: 228 FTQVRHAKPPASRKDSSELYVVATGFR 254


>gi|317046734|ref|YP_004114382.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. At-9b]
 gi|316948351|gb|ADU67826.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. At-9b]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   ++ GS+    R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVQLIGSSG---RIIACDLLPMDPIVGVDFLQGDFRDEAVLKTLLERVGDEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|255263254|ref|ZP_05342596.1| ribosomal RNA large subunit methyltransferase J [Thalassiobium sp.
           R2A62]
 gi|255105589|gb|EET48263.1| ribosomal RNA large subunit methyltransferase J [Thalassiobium sp.
           R2A62]
          Length = 237

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 10/236 (4%)

Query: 1   MVKPPGS----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKL 55
           M K P        +R LT KVK+ R  + SS  WL R +NDPYV+RA+ +G+R R+AYK+
Sbjct: 1   MAKKPTGNTSGRGQRDLTVKVKSARGRKMSSTLWLQRQLNDPYVKRAKADGYRGRAAYKI 60

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPIL 110
           L++++K++ L    RIVDLG++PG W QVA +               ++ +D+ +MEPI 
Sbjct: 61  LELDDKYRFLVPGARIVDLGAAPGGWCQVAVKRCNVLGQKTSKAQGTILGVDLQEMEPIA 120

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           G +  + DF++ D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA +FA 
Sbjct: 121 GCELHQLDFMEDDADLKVKEWLGGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFAF 180

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++L  GG F+ K   GG   D+  LLK  F KV +VKP ASR++S E F++A GF+
Sbjct: 181 DVLEEGGTFVAKVLAGGAEGDLQKLLKTKFTKVANVKPPASRSDSSEKFVVATGFK 236


>gi|226329691|ref|ZP_03805209.1| hypothetical protein PROPEN_03603 [Proteus penneri ATCC 35198]
 gi|225202877|gb|EEG85231.1| hypothetical protein PROPEN_03603 [Proteus penneri ATCC 35198]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G+R+R+ +KL +I +   I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ   +  GS     R++A D+L M+PI+GV F + DF D    + +   +G   
Sbjct: 61  APGGWSQYVVQKLGSKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGENK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPGGSFIVKVFQGEGFDEYLGQ 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDASRSRSREVYIVATGRK 208


>gi|254464047|ref|ZP_05077458.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium Y4I]
 gi|206684955|gb|EDZ45437.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium Y4I]
          Length = 238

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/237 (40%), Positives = 151/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKTPTGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT-----GSNANNTRVVAIDILDMEPI 109
           ++++++K + L +  R+VDLG +PG W+QVA +              R++ +D+ ++EP+
Sbjct: 61  IMELDDKFRFLVNGARVVDLGCAPGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA
Sbjct: 121 AGAEFHQLDFMDEGADDQVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F KV+++KP +SR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQKFTKVMNMKPPSSRSDSSEKFVVAMGFR 237


>gi|149202447|ref|ZP_01879419.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
 gi|149143729|gb|EDM31763.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
          Length = 238

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPP-----GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R    SS  WL R +NDPYV+RAQ+EG+R R+A+K
Sbjct: 1   MAKTPDGKNTSGRGQRDLTVKVKTARGRTSSSTRWLQRQLNDPYVKRAQVEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPI 109
           ++++++K + L    R++DLG +PG W QVA                R+V +D+ ++EPI
Sbjct: 61  IMELDDKFRFLVPGARVLDLGCAPGGWCQVAVPRVNALGEKQGKAIGRIVGVDLQEVEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
           +G +  + DF+  D+ + ++  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A
Sbjct: 121 MGCEIHQLDFMADDADQQVKDWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L +GG F+ K   GG   ++  LLKK F KV +VKP ASRA+S E F++A GFR
Sbjct: 181 FDVLEVGGTFVSKVLAGGAEGELQTLLKKRFDKVANVKPPASRADSSEKFVVATGFR 237


>gi|24372779|ref|NP_716821.1| 23S rRNA methyltransferase J [Shewanella oneidensis MR-1]
 gi|81462880|sp|Q8EHM3|RLME_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|24346860|gb|AAN54266.1|AE015563_6 ribosomal RNA large subunit methyltransferase J [Shewanella
           oneidensis MR-1]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL ++ +K Q+++    +VDLG+
Sbjct: 1   MSGKKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    E +   +G   
Sbjct: 61  APGGWSQVAVKLVG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VKEAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|292486828|ref|YP_003529698.1| cell division protein [Erwinia amylovora CFBP1430]
 gi|292900773|ref|YP_003540142.1| ribosomal RNA large subunit methyltransferase J [Erwinia amylovora
           ATCC 49946]
 gi|291200621|emb|CBJ47753.1| ribosomal RNA large subunit methyltransferase J [Erwinia amylovora
           ATCC 49946]
 gi|291552245|emb|CBA19282.1| cell division protein [Erwinia amylovora CFBP1430]
          Length = 209

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKHGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      GS     RV+A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFRDELVLKALLEHVGDTK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMTGTPAVDIPRSMYLCELALEMCRDVLAPGGSFLVKVFQGDGFEEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|107103849|ref|ZP_01367767.1| hypothetical protein PaerPA_01004920 [Pseudomonas aeruginosa PACS2]
          Length = 207

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   ++ R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+
Sbjct: 63  SQVTSRVIG---DHGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F
Sbjct: 120 SDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|254486645|ref|ZP_05099850.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           GAI101]
 gi|214043514|gb|EEB84152.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           GAI101]
          Length = 251

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 97/230 (42%), Positives = 145/230 (63%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R L  KVK+ R  + SS  WL R +NDPYV+RA  EG+R R+AYK++++++K
Sbjct: 13  KNTSGRGQRDLKVKVKSARGRKLSSTRWLQRQLNDPYVKRANAEGYRGRAAYKIMELDDK 72

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKFFK 116
            + L    RIVDLG++PG W QVA +           N   ++ ID+ +MEPI G +  +
Sbjct: 73  FRFLVPGARIVDLGAAPGGWCQVAVKRCNVLGEKQGKNVGTILGIDLQEMEPIAGCELHQ 132

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF++ D+ E ++  +GG  D+V+SDMA  + GH++ DH R ++LCEAA +FA ++L  G
Sbjct: 133 LDFMEDDADEIVKGWLGGKADVVMSDMAASSSGHKQTDHNRIIALCEAAAYFAFDVLEDG 192

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   D+  LLK+ F KV ++KP ASR +S E F++A GF+
Sbjct: 193 GTFVAKVLAGGAEGDLQKLLKRRFTKVSNIKPPASRQDSSEKFVVATGFK 242


>gi|163743278|ref|ZP_02150659.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
           gallaeciensis 2.10]
 gi|161383466|gb|EDQ07854.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
           gallaeciensis 2.10]
          Length = 251

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/230 (41%), Positives = 148/230 (64%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK++++++K
Sbjct: 13  KNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDK 72

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARIT-----GSNANNTRVVAIDILDMEPILGVKFFK 116
            + L +  R+VDLG +PG W+QVA +              R++ +D+ ++EP+ G +F +
Sbjct: 73  FRFLINGARVVDLGCAPGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGAEFHQ 132

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA ++L  G
Sbjct: 133 LDFMDDGADDKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDG 192

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   ++  LLK+ F KV HVKP +SR++S E F++A GFR
Sbjct: 193 GTFVAKVLAGGAEGELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242


>gi|163736478|ref|ZP_02143897.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Phaeobacter
           gallaeciensis BS107]
 gi|161390348|gb|EDQ14698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Phaeobacter
           gallaeciensis BS107]
          Length = 251

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 96/230 (41%), Positives = 148/230 (64%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK++++++K
Sbjct: 13  KNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDK 72

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARIT-----GSNANNTRVVAIDILDMEPILGVKFFK 116
            + L +  R+VDLG +PG W+QVA +              R++ +D+ ++EP+ G +F +
Sbjct: 73  FRFLINGARVVDLGCAPGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGAEFHQ 132

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA ++L  G
Sbjct: 133 LDFMDDGADDKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDG 192

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   ++  LLK+ F KV HVKP +SR++S E F++A GFR
Sbjct: 193 GTFVAKVLAGGAEGELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242


>gi|330504835|ref|YP_004381704.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
           NK-01]
 gi|328919121|gb|AEB59952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
           NK-01]
          Length = 207

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF D   +  + +AIG NP DLV+
Sbjct: 63  SQVTSRVIG---DKGRLIASDILEMDAIPDVTFIQGDFTDDAVFTRLLEAIGENPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +     +++ F
Sbjct: 120 SDMAPNMSGVRTADQARAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDAYHKQVRETF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|254787193|ref|YP_003074622.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
           turnerae T7901]
 gi|237683719|gb|ACR10983.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
           turnerae T7901]
          Length = 206

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H +D YV+ +Q +G+R+R++YKL++++ K ++ +    +VDLG++PG W
Sbjct: 3   RSKSSHRWLREHFSDQYVKASQKDGYRSRASYKLIELDNKDKLFRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVL 140
           SQVA +  G   +  +V+A DIL M+ I GV F + DF +    E +  A+ G   DLV+
Sbjct: 63  SQVAVQQIG---DKGQVIASDILPMDSIAGVTFIQGDFTEESVLEELLGAMDGERADLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  ++M L E A   A ++L  GG F+ K F G   +D        F
Sbjct: 120 SDMAPNMSGVTAVDQPKSMYLVELALDMAKQVLKPGGTFVCKVFHGEGFDDFFKDCNASF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            K +  KP ASRA S E++L+AKG++
Sbjct: 180 SKAVTRKPDASRARSREVYLVAKGYK 205


>gi|270265052|ref|ZP_06193315.1| hypothetical protein SOD_k00880 [Serratia odorifera 4Rx13]
 gi|270040986|gb|EFA14087.1| hypothetical protein SOD_k00880 [Serratia odorifera 4Rx13]
          Length = 209

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G N    R++A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGNG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGESK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALGMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|114046589|ref|YP_737139.1| 23S rRNA methyltransferase J [Shewanella sp. MR-7]
 gi|122944866|sp|Q0HXS3|RLME_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|113888031|gb|ABI42082.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. MR-7]
          Length = 209

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ AQ  G R+R+A+KL ++ +K Q+++    +VDLG+
Sbjct: 1   MSGKKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    E +   +G   
Sbjct: 61  APGGWSQVAVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VKEAFKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|16125862|ref|NP_420426.1| cell division protein FtsJ [Caulobacter crescentus CB15]
 gi|81535426|sp|Q9A7V4|RLME_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|13423014|gb|AAK23594.1| cell division protein FtsJ [Caulobacter crescentus CB15]
          Length = 226

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/229 (40%), Positives = 139/229 (60%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 1   MVKPPAGGNEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K        +++DLG +PG W Q+A          T +  ID+L ++P+      + 
Sbjct: 61  IDDKFHFFSKGAKVIDLGCAPGGWLQIAVER-----GVTTLAGIDLLPVDPVAPAHLLEM 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF    + E + + +GG PDLV+SDMA  T+GHR+ DHLR + L E A  FA+++L  GG
Sbjct: 116 DFTADGAPEKLLELLGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAIDVLKPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T +I+  LK+HF KV H KP ASR +S E+FL+A GF+
Sbjct: 176 AFVAKAFQGGETAEIIGKLKRHFDKVQHFKPKASRQDSSEVFLVATGFK 224


>gi|217970150|ref|YP_002355384.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
 gi|217507477|gb|ACK54488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
          Length = 207

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 128/208 (61%), Gaps = 4/208 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +SR W++ H+NDP+VQRAQ EG+RAR+A+KLL+I+E+  +L+    +VDLG++PGS
Sbjct: 2   KKNKTSRAWVHDHVNDPWVQRAQAEGYRARAAFKLLEIDERDHLLRPGAVVVDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           W Q+A +  G      R+ A+D+L MEP+ GV+F   DF +    E +   +GG + D+V
Sbjct: 62  WCQLAVKRCGPKG---RIFALDLLPMEPVAGVEFLLGDFTEDAVLEELEARLGGASVDVV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R++ LCE A  FA+  L  GG F+VK FQG    +    ++  
Sbjct: 119 LSDMAPNLSGVATVDQARSVHLCELALDFAVRHLKPGGQFVVKVFQGEGFMEYRKQMEAA 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F  V   KP ASR  S E++L+ +G R+
Sbjct: 179 FVSVQVRKPKASRDRSAEVYLVGRGPRR 206


>gi|259418917|ref|ZP_05742834.1| ribosomal RNA large subunit methyltransferase J [Silicibacter sp.
           TrichCH4B]
 gi|259345139|gb|EEW56993.1| ribosomal RNA large subunit methyltransferase J [Silicibacter sp.
           TrichCH4B]
          Length = 238

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 150/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 1   MAKKPTGKNTSGRGQRDLTVKVKTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT-----GSNANNTRVVAIDILDMEPI 109
           ++++++K++ L    R+VDLG +PG W+QVA          S     R + +D+ ++EP+
Sbjct: 61  IMELDDKYRFLVPGARVVDLGCAPGGWAQVAVPRINALGEKSGKAIGRFIGVDLQEVEPL 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F + DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHLR MSLCE A +FA
Sbjct: 121 AGAEFHQLDFMDEGADDQVKEWLGGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   ++  LLK+ F+ V +VKP +SRA+S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGELQKLLKQKFKSVANVKPPSSRADSSEKFVIATGFR 237


>gi|262376626|ref|ZP_06069854.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           lwoffii SH145]
 gi|262308336|gb|EEY89471.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
           lwoffii SH145]
          Length = 216

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 139/216 (64%), Gaps = 4/216 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSRDW+  H++DPYV++AQ +G+RAR+AYKLL++ EK++I++    +V
Sbjct: 1   MATRITNQKLSKSSRDWMREHLDDPYVKKAQKDGYRARAAYKLLEMQEKYKIIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   ++A DIL M+ +  V F + DF + + ++ + + +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DKGLLIASDILPMDALPDVTFLQGDFREEEVFQQLLEIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G++ +D  R + LCE A  FA ++L   G F+VK FQG   ++
Sbjct: 118 DGRIVDVVISDMAPNTSGNKAVDQPRQIYLCELALDFANKVLGPKGQFVVKVFQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   F  +   KP+ASRA S E+FL+ +G +K
Sbjct: 178 FRKQVVDSFDVLKTSKPLASRARSKEVFLIGQGRKK 213


>gi|146308631|ref|YP_001189096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
           ymp]
 gi|189040321|sp|A4XYE8|RLME_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|145576832|gb|ABP86364.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas mendocina ymp]
          Length = 207

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF D   +  I +AIG NP DLV+
Sbjct: 63  SQVTSRVIG---DKGRLIASDILEMDSIPDVTFIQGDFTDDAVFARILEAIGENPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +     ++  F
Sbjct: 120 SDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDTYHRQVRDSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|332993370|gb|AEF03425.1| 23S rRNA methyltransferase J [Alteromonas sp. SN2]
          Length = 209

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/211 (38%), Positives = 124/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS+ WL  H ND YVQ+AQ +G R+R+ +KL +I +K +++     +VDLG+
Sbjct: 1   MTKKKHSASSKRWLTEHFNDHYVQKAQKQGKRSRAFFKLEEIQQKDKLISKGNTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ+A+ +   N    +V+A DIL M+ I+GV F + DF D      +   IGGN 
Sbjct: 61  APGGWSQLASELVRDNG---QVIACDILPMDSIVGVDFLQGDFRDEAVLNALLNRIGGNT 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M LCE A     ++L  GG F++K FQG   +  L  
Sbjct: 118 VDIVLSDMAPNLSGNAAVDQAGSMYLCELALDMCHQVLKPGGGFMIKVFQGEGFDTFLRA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+  F  +   KP +SR+ S E++L+A G++
Sbjct: 178 LRDSFTTIKTRKPDSSRSRSREVYLVALGYK 208


>gi|253686966|ref|YP_003016156.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259494567|sp|C6DKI3|RLME_PECCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|251753544|gb|ACT11620.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 209

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G N    R++A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGNG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLAPGGSFLVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|330807476|ref|YP_004351938.1| ribosomal RNA large subunit methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375584|gb|AEA66934.1| Ribosomal RNA large subunit methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 210

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 126/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WL  H NDP+V+ AQ +G+R+R++YKLL+I E+ ++++    ++DLG++PG W
Sbjct: 3   RSKTSLKWLQEHFNDPFVKMAQKDGYRSRASYKLLEIQERDRLIRPGMSVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVL 140
           SQV +R+ G       ++A DIL+M+ I  V F + DF +      I +A+G N  DLV+
Sbjct: 63  SQVTSRLIGGQGT---LIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGKNEVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R+M LCE A   A  +L  GGDFL+K FQG   ++    ++K F
Sbjct: 120 SDMAPNMSGLASVDMPRSMFLCELALDLATRVLKPGGDFLIKVFQGEGFDEYHKSVRKQF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           +KV   KP +SR  S E +LL +GFR
Sbjct: 180 EKVTTRKPKSSRDRSREQYLLGRGFR 205


>gi|296391579|ref|ZP_06881054.1| cell division protein FtsJ [Pseudomonas aeruginosa PAb1]
          Length = 207

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+
Sbjct: 63  SQVTSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F
Sbjct: 120 SDMAPNMSGVRAADQPRAMYLCELALDLARRVLRPGGDFLIKIFQGEGFDQYHKQAREMF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|254420188|ref|ZP_05033912.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas sp.
           BAL3]
 gi|196186365|gb|EDX81341.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas sp.
           BAL3]
          Length = 224

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 146/229 (63%), Gaps = 8/229 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP  G+++ RG+  K+K    +  SS+ W+ R + D + ++A+ EGWR+R+A+KL++
Sbjct: 1   MVKPPTGGTAAGRGMGTKMKTADTKSMSSQQWIKRQLADKWSEKARAEGWRSRAAFKLIE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K  +++   +++DLG++PG W QVA      N     V  +D+L +EPI G    + 
Sbjct: 61  IDDKFHLIKRGSKVIDLGAAPGGWIQVAV-----NRGAGAVAGVDLLMIEPIPGSTLLQA 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF      + +  AIGG PDLVLSDMA+ T+GHR+ DHL+ ++L E A  FA+  L  GG
Sbjct: 116 DFTHPGVDQQLIDAIGGAPDLVLSDMAHNTVGHRQTDHLKIIALIEIAADFAIRTLRPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +F+ K FQGG    +L  L++ F+ V +VKP +SR +S E+FL+A   R
Sbjct: 176 NFVSKNFQGGDAGGVLARLREEFETVKYVKPASSRKDSAEVFLVALNKR 224


>gi|329893942|ref|ZP_08269977.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC3088]
 gi|328923397|gb|EGG30714.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC3088]
          Length = 208

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + SS+ WL  H +D YVQRAQ EG+R+R+ YKL+++NEK ++L+    +VDLGS+PG 
Sbjct: 3   KKKSSSKAWLKEHRDDVYVQRAQKEGYRSRACYKLIELNEKDRLLRPGMTVVDLGSAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVAA I G      RV+A DIL M+ +  V F + DF +   ++ + +AIG  P DLV
Sbjct: 63  WSQVAAGIVGVKG---RVIATDILPMDTLEDVDFIQGDFTEEAVFDALLEAIGDEPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R M L E A   A  +L   G F+ K FQG   +++   L++ 
Sbjct: 120 MSDMAPNMSGMTAVDQPRAMYLVELAVDMASRVLAPKGAFVAKVFQGEGFDELFRSLREQ 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           +Q V+  KP ASR  S E++++AKGF+
Sbjct: 180 YQTVLTRKPDASRPRSREVYIVAKGFK 206


>gi|291616003|ref|YP_003518745.1| RrmJ [Pantoea ananatis LMG 20103]
 gi|291151033|gb|ADD75617.1| RrmJ [Pantoea ananatis LMG 20103]
          Length = 223

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 15  MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 74

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   +  GS     RV+A DIL M+PI+GV F + DF +    + + + +G   
Sbjct: 75  APGGWSQYVVQQIGSKG---RVIACDILPMDPIVGVDFLQGDFREESVIKALLERVGEQK 131

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 132 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDILAPGGSFVVKVFQGDGFDEYLRE 191

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 192 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 222


>gi|260433766|ref|ZP_05787737.1| ribosomal RNA large subunit methyltransferase J [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417594|gb|EEX10853.1| ribosomal RNA large subunit methyltransferase J [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 238

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 149/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKKPSGKNTSGRGQRDLKVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPI 109
           +L++++K++ L    R+VDLG +PG W QVA +        S      V+ ID+ ++EPI
Sbjct: 61  ILELDDKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGEKSGKKVGTVLGIDLQEVEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF++  + E +++ +GG  D+V+SDMA  + GH++ DHLR ++LCE A +FA
Sbjct: 121 AGAEIHQLDFMEDGADEKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ F+KV +VKP ASR++S E F++A GFR
Sbjct: 181 FDVLEKGGTFVAKVLAGGAEGDLQKLLKQKFEKVANVKPPASRSDSSEKFVVATGFR 237


>gi|119477411|ref|ZP_01617602.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2143]
 gi|119449337|gb|EAW30576.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2143]
          Length = 207

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 129/208 (62%), Gaps = 4/208 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ WL  H +D YVQRAQ EG+R+R+ YKLL++NEK +++++   ++DLGS+PG 
Sbjct: 3   KKGNTSKGWLKEHFDDSYVQRAQREGYRSRACYKLLELNEKDKLIKAGMTVIDLGSAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVAA + G   +  RV+A DIL M+ + GV F + DF D   ++ I + + G   DLV
Sbjct: 63  WSQVAAELVG---DKGRVIASDILKMDNLAGVDFIQGDFTDQPVFDSIMEMLDGKEVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   ID  ++M L E A   A ++L  GG+F+ K FQG   + +L  ++  
Sbjct: 120 ISDMAPNMSGMAAIDQPQSMYLVELALDMARQVLRPGGNFVAKVFQGEGFDQLLQDMRIS 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F  V   KP ASRA S E++ L +GF++
Sbjct: 180 FNSVQSRKPAASRARSREVYQLGRGFKR 207


>gi|127513763|ref|YP_001094960.1| 23S rRNA methyltransferase J [Shewanella loihica PV-4]
 gi|158513475|sp|A3QGV3|RLME_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|126639058|gb|ABO24701.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella loihica PV-4]
          Length = 209

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ +Q  G R+R+A+K+ +I +K ++++    +VDLG+
Sbjct: 1   MSGKKRTASSTRWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQQKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ+A ++ G      +V+A DIL M+PI+GV F + DF +      + + +G   
Sbjct: 61  APGGWSQIAVKLAGETG---KVIACDILPMDPIVGVDFLQGDFREEKVLNALLERVGDAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F  V   KP +SR  S E++L+A G++
Sbjct: 178 VREAFTTVKTRKPDSSRPRSREVYLVATGYK 208


>gi|254475869|ref|ZP_05089255.1| ribosomal RNA large subunit methyltransferase J [Ruegeria sp. R11]
 gi|214030112|gb|EEB70947.1| ribosomal RNA large subunit methyltransferase J [Ruegeria sp. R11]
          Length = 257

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/230 (41%), Positives = 149/230 (64%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R L  KVK+ R  + SS  WL R +NDPYV+RAQ EG+R R+AYK++++++K
Sbjct: 13  KNTSGRGQRELKVKVKSARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDK 72

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARIT-----GSNANNTRVVAIDILDMEPILGVKFFK 116
            + L +  R+VDLG +PG W+QVA +           +  R++ +D+ ++EP+ G +F +
Sbjct: 73  FRFLVNGARVVDLGCAPGGWAQVAVKRINALGEKPGKSVGRIIGVDLQEVEPLAGAEFHQ 132

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF+   + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCE A +FA ++L  G
Sbjct: 133 LDFMSDGADDKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEEG 192

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   ++  LLK+ F KV HVKP +SR++S E F++A GFR
Sbjct: 193 GTFVAKVLAGGAEGELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242


>gi|260427088|ref|ZP_05781067.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
           SE45]
 gi|260421580|gb|EEX14831.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
           SE45]
          Length = 238

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 147/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK ++ +G   SS  WL R +NDPYV+RA+ EG+R R+A+K
Sbjct: 1   MAKKPTGKNTSGRGQRDLKVKVKTARGRTLSSTRWLQRQLNDPYVKRAKDEGFRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPI 109
           +L+++E+   L+   R+VDLG +PG W QVA     S     N     V+ +D+ ++ P+
Sbjct: 61  ILELDERFGFLKPGARVVDLGCAPGGWCQVAVPRVNSLGEKKNKPQGFVLGVDLQEVLPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G   ++ DFL++ + + +++ +GG  D+V+SDMA  + GH++ DHLR +SLCEAA   A
Sbjct: 121 PGADIYQLDFLEMGADDKVKEWLGGRADVVMSDMAASSSGHKQTDHLRIISLCEAAAELA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG    +  LLK+ F KV +VKP +SRA+S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEQGLQSLLKQRFDKVYNVKPPSSRADSSEKFVVATGFR 237


>gi|15599946|ref|NP_253440.1| cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
 gi|116052899|ref|YP_793216.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893847|ref|YP_002442716.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
 gi|313109733|ref|ZP_07795673.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
 gi|12230965|sp|P95454|RLME_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122257090|sp|Q02FS0|RLME_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705300|sp|B7V1G4|RLME_PSEA8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|9951015|gb|AAG08138.1|AE004889_1 cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
 gi|115588120|gb|ABJ14135.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218774075|emb|CAW29891.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
 gi|310882175|gb|EFQ40769.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
          Length = 207

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+
Sbjct: 63  SQVTSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F
Sbjct: 120 SDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|152985989|ref|YP_001350794.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
 gi|189040320|sp|A6VCK9|RLME_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150961147|gb|ABR83172.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
          Length = 207

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+
Sbjct: 63  SQVTSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGEHPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F
Sbjct: 120 SDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|110772930|ref|XP_001123010.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like,
           partial [Apis mellifera]
          Length = 225

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 135/209 (64%), Gaps = 5/209 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K +    S + WL R +NDPYV+ AQ  GWR+R+AYKL+++N+K   L+   ++VDLG++
Sbjct: 14  KTKGRSTSQQRWLTRQLNDPYVKAAQQHGWRSRAAYKLIELNDKFHFLKKGIKVVDLGAA 73

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG WSQVA     S     +VV ID+L +EP++G   F+ DF +  + E +   + G  D
Sbjct: 74  PGGWSQVAVYHKAS-----KVVGIDLLQVEPVMGADIFQGDFTEPHNLEVLLDKLEGKAD 128

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LV+SDMA  T GH   DH+R ++L E A  FA+++LN+ G F+ K FQGG+   +L  LK
Sbjct: 129 LVMSDMAPNTTGHAATDHIRIVNLTEQALDFAIKILNLNGVFIAKVFQGGSEKLMLNNLK 188

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F+ V H KP ASR ES E++++A GF+
Sbjct: 189 RSFKIVKHAKPPASRKESRELYVIATGFK 217


>gi|293609978|ref|ZP_06692280.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828430|gb|EFF86793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 207

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
             SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +VDLG++PGSWS
Sbjct: 2   SKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWS 61

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
           Q+A ++ GS      V+A DIL M+ +  V F + DF +   +E +   + G   D+V+S
Sbjct: 62  QIAGKLVGSKG---LVIASDILPMDALPDVTFLQGDFREEAVFEKLLNILNGRQVDIVIS 118

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA  T G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++    +   F 
Sbjct: 119 DMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFD 178

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
            +   KP ASRA S E+FL+ +G +K
Sbjct: 179 VLKTAKPAASRARSKEVFLVGQGRKK 204


>gi|126735777|ref|ZP_01751522.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. CCS2]
 gi|126714964|gb|EBA11830.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. CCS2]
          Length = 241

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 150/237 (63%), Gaps = 11/237 (4%)

Query: 1   MVKPPG-----SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+AYK
Sbjct: 1   MAKKPTKKNTSGRGQRDLTVKVKTARGRKLSSTQWLQRQLNDPYVKRAQTEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPI 109
           +L++++K++ L    RIVDLG +PG W QVA +   +           V+ +D+ ++EP+
Sbjct: 61  ILELDDKYRFLVPGARIVDLGCAPGGWLQVAVKRANTLGERTSKAQGYVLGVDLQEVEPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G + ++ DF++ D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA +FA
Sbjct: 121 AGAEIYQLDFMEDDADLKVKEWLGGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK  F+KV +VKP ASR++S E F++A GF+
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGDLQKLLKARFKKVANVKPPASRSDSSEKFVVATGFK 237


>gi|126175447|ref|YP_001051596.1| 23S rRNA methyltransferase J [Shewanella baltica OS155]
 gi|153001798|ref|YP_001367479.1| 23S rRNA methyltransferase J [Shewanella baltica OS185]
 gi|160876531|ref|YP_001555847.1| 23S rRNA methyltransferase J [Shewanella baltica OS195]
 gi|217972307|ref|YP_002357058.1| 23S rRNA methyltransferase J [Shewanella baltica OS223]
 gi|304410273|ref|ZP_07391892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS183]
 gi|307302016|ref|ZP_07581774.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           BA175]
 gi|189040333|sp|A3D7L4|RLME_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040335|sp|A6WRH7|RLME_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040336|sp|A9KZX9|RLME_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809559|sp|B8E6M4|RLME_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|125998652|gb|ABN62727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS155]
 gi|151366416|gb|ABS09416.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS185]
 gi|160862053|gb|ABX50587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS195]
 gi|217497442|gb|ACK45635.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS223]
 gi|304351682|gb|EFM16081.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS183]
 gi|306914054|gb|EFN44475.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           BA175]
 gi|315268725|gb|ADT95578.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
           OS678]
          Length = 209

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS  W+  H +D YV+ AQ  G R+R+A+KL +I +K Q+++    +VDLG++PG 
Sbjct: 5   KRTASSNRWMLEHFDDHYVKLAQKMGLRSRAAFKLEEIQQKDQLIRPGMTVVDLGAAPGG 64

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G    D+V
Sbjct: 65  WSQVAVKLAG---DRGKVIACDILPMDPIVGVDFLQGDFREDKVLQALLTRVGDAKVDVV 121

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  +K  
Sbjct: 122 LSDMAPNMSGSDSVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKAVKAV 181

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+ V   KP +SRA S E++L+A G++
Sbjct: 182 FKVVKTRKPDSSRARSREVYLVATGYK 208


>gi|159044221|ref|YP_001533015.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157911981|gb|ABV93414.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 257

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 8/234 (3%)

Query: 1   MVKPPGSSSR--RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           M K  G+S R  R L  +VK  R  + SS  WL R +NDPYVQ+A+ EG+R R+A+K+L+
Sbjct: 15  MPKKAGNSGRGQRDLRVRVKTARGRKLSSTLWLERQLNDPYVQKAKREGYRGRAAFKILE 74

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPILGV 112
           I+E+ + L    R+VDLG +PG W QVA R        S     RV+ +D+ +++P+ G 
Sbjct: 75  IDERFRFLVPGARVVDLGCAPGGWCQVAVRRVNALGEKSGKAQGRVLGVDLKEIDPVPGA 134

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           +    DF++  +   ++  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA   A ++
Sbjct: 135 ETHVLDFMEDGADAQVKAWLGGKADVVMSDMAAASSGHKQTDHLRIVALCEAAAHLAFDV 194

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ K   GG   ++  LLK+ F KVI+VKP ASR++S E F++A GFR
Sbjct: 195 LEEGGTFVAKVLAGGAERELQTLLKRAFTKVINVKPDASRSDSSEKFVVATGFR 248


>gi|329297291|ref|ZP_08254627.1| 23S rRNA methyltransferase J [Plautia stali symbiont]
          Length = 209

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   +  GS     R++A D+L ++PI GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVQQIGSGG---RIIACDLLPIDPIGGVDFLQGDFRDEAVLKALLERVGDQK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFVVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|157803350|ref|YP_001491899.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           canadensis str. McKiel]
 gi|189040327|sp|A8EXN1|RLME_RICCK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157784613|gb|ABV73114.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
           canadensis str. McKiel]
          Length = 227

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 155/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  R    SS +WL R +NDPYV +A+ +G+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKTSRKRTVSSNNWLRRQLNDPYVAKARTQGFRSRAAYKLLEIHEKFKLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQ+A+++  +  N+ N ++++ID+L++ PI+GV+FF+ DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQIASKLIKASDNSLNNKIISIDLLEIRPIVGVEFFQKDFFEEDT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            + I QA+ G  ++V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EKLIIQALDGKANIVMSDMASNTIGHKATDHIRTLLLCEQALEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N +L  +K  F+ V H KP++SR+ES E++L+A   +
Sbjct: 186 RGGAENKLLNKVKHEFRTVKHFKPLSSRSESTEIYLVALNKK 227


>gi|227113766|ref|ZP_03827422.1| 23S rRNA methyltransferase J [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328603|ref|ZP_03832627.1| 23S rRNA methyltransferase J [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|261820120|ref|YP_003258226.1| 23S rRNA methyltransferase J [Pectobacterium wasabiae WPP163]
 gi|261604133|gb|ACX86619.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
           wasabiae WPP163]
          Length = 209

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G N    R++A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGNG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLAPGGSFLVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|310816173|ref|YP_003964137.1| ribosomal RNA large subunit methyltransferase J [Ketogulonicigenium
           vulgare Y25]
 gi|308754908|gb|ADO42837.1| ribosomal RNA large subunit methyltransferase J [Ketogulonicigenium
           vulgare Y25]
          Length = 249

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 147/238 (61%), Gaps = 12/238 (5%)

Query: 1   MVKPP---GSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAY 53
           M KPP   G +S RG   LT KVK  +  + SS  WL R +NDPYV RA+ EG+R R+AY
Sbjct: 1   MTKPPSKTGGTSGRGQRDLTVKVKTAKGRKLSSTKWLERQLNDPYVVRARAEGYRGRAAY 60

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEP 108
           K++++++K   L+   R+VDLG +PG W QVA     +          R++ +D+  ++P
Sbjct: 61  KIMELDDKFGFLKPGARVVDLGCAPGGWLQVAVPRINALGERAGKPVGRILGLDLQVVDP 120

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
           + G +    DFL  D+   +++ +GG  D+V+SDMA    GH++ DHLR ++LCEAA + 
Sbjct: 121 VPGAEVHVLDFLADDADLQVKEWLGGQADVVMSDMAASASGHKQTDHLRIIALCEAAAYL 180

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           A ++L  GG F+ K   GG   ++  +LK+ F KV +VKP +SR++S E F++A G+R
Sbjct: 181 AFDVLTPGGTFVCKVLAGGAEGELQKILKQKFTKVENVKPPSSRSDSSEKFVVATGYR 238


>gi|85702831|ref|ZP_01033935.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
           217]
 gi|85671759|gb|EAQ26616.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
           217]
          Length = 238

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 147/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPP-----GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R    SS  WL R +NDPYV+RAQ+EG+R R+A+K
Sbjct: 1   MAKTPDGKNTSGRGQRDLTVKVKTARGRTSSSTRWLQRQLNDPYVKRAQIEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPI 109
           ++++++K + L    R++DLG +PG W QVA                R+V +D+ ++EPI
Sbjct: 61  IMELDDKFRFLVPGARVLDLGCAPGGWCQVAVPRVNALGEKKGKAIGRIVGVDLQEVEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF+  D+ + ++  +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A
Sbjct: 121 AGCEIHQLDFMADDADQQVKDWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L +GG F+ K   GG   ++  LLKK F KV +VKP ASRA+S E F++A GFR
Sbjct: 181 FDVLEVGGTFVSKVLAGGAEGELQTLLKKRFDKVANVKPPASRADSSEKFVIATGFR 237


>gi|302382743|ref|YP_003818566.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193371|gb|ADL00943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 224

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/229 (40%), Positives = 144/229 (62%), Gaps = 8/229 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP  G+++ RG+  K+K    +  SS +W+ R + DP+ ++A+ EGWR+R+A+K  +
Sbjct: 1   MVKPPTGGTAAGRGMGGKIKTAEKKSISSIEWIKRQLADPWSEKARAEGWRSRAAFKFSE 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+++  +++   R++DLG++PG W QV       N     VV +D+L +EPI G    + 
Sbjct: 61  IDDRFHLVKRGSRVIDLGAAPGGWVQVCV-----NRGAASVVGVDLLPIEPIPGSTLIQA 115

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D    + +   +GG PDLVLSDMA+ T+GHR+ DHL+ ++L E A+ FA+  L  GG
Sbjct: 116 DFTDPGVDQQLIDLLGGPPDLVLSDMAHNTVGHRQTDHLKIIALIEVASDFAIRTLRPGG 175

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG    +L  L+  FQ+V +VKP ASR  S E++L+A   +
Sbjct: 176 HFVTKNFQGGDAGRVLAELRAAFQEVKYVKPAASRKGSSEVYLVALNRK 224


>gi|254238512|ref|ZP_04931835.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
 gi|254244346|ref|ZP_04937668.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
 gi|126170443|gb|EAZ55954.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
 gi|126197724|gb|EAZ61787.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
          Length = 207

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ +G+R+R++YKLL+I EK +IL+    +VDLG++PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I +AIG +P DLV+
Sbjct: 63  SQVTSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDHPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G R  D  R M LCE A   A  +L  GGDFL+K FQG   +      ++ F
Sbjct: 120 SDMAPNMSGVRASDQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHKQAREMF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP++SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPLSSRDRSREQYLLARGFR 205


>gi|317493619|ref|ZP_07952040.1| ribosomal RNA large subunit methyltransferase J [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918562|gb|EFV39900.1| ribosomal RNA large subunit methyltransferase J [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 208

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS  W++ H +D YV +AQ +G R+R+ +KL +I    ++ +    +VDLG++P
Sbjct: 2   GKKRSASSNRWMHEHFSDKYVIQAQKKGLRSRAWFKLDEIQSTDKLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPD 137
           G WSQ      G   N+ RV+A DIL M+PI+GV F + DF D    + +   +G     
Sbjct: 62  GGWSQYVVTQIG---NSGRVIACDILPMDPIVGVDFLQGDFRDELVLKALTDRVGEDKVQ 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A   A ++L  GG FLVK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNMSGTPSVDIPRSMYLVELALEMAKDVLAPGGSFLVKVFQGEGFDEYLTQIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP ASRA S E++++A G +
Sbjct: 179 SLFTKVKIRKPDASRARSREVYIVATGRK 207


>gi|221234624|ref|YP_002517060.1| 23S rRNA Um2552 2'-O-methyltransferase [Caulobacter crescentus
           NA1000]
 gi|220963796|gb|ACL95152.1| 23S rRNA Um2552 2'-O-methyltransferase [Caulobacter crescentus
           NA1000]
          Length = 236

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/229 (40%), Positives = 139/229 (60%), Gaps = 8/229 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MVKPP   +  G  +  + ++  G   S + WL R INDP+  +A+  G+R+R+A+K+ +
Sbjct: 11  MVKPPAGGNEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISE 70

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K        +++DLG +PG W Q+A          T +  ID+L ++P+      + 
Sbjct: 71  IDDKFHFFSKGAKVIDLGCAPGGWLQIAVER-----GVTTLAGIDLLPVDPVAPAHLLEM 125

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF    + E + + +GG PDLV+SDMA  T+GHR+ DHLR + L E A  FA+++L  GG
Sbjct: 126 DFTADGAPEKLLELLGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAIDVLKPGG 185

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ K FQGG T +I+  LK+HF KV H KP ASR +S E+FL+A GF+
Sbjct: 186 AFVAKAFQGGETAEIIGKLKRHFDKVQHFKPKASRQDSSEVFLVATGFK 234


>gi|312114414|ref|YP_004012010.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219543|gb|ADP70911.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 240

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/227 (45%), Positives = 138/227 (60%), Gaps = 1/227 (0%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M K   +  R    +  K R    S R WL R +NDPYV  A+ +G+R+R+AYKL +I E
Sbjct: 1   MTKREQNPDRSFKIKLKKTRGRTASQRQWLERQLNDPYVAAAKRDGYRSRAAYKLEEIAE 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K+ +L+    +VDLG++PG WSQVAA    +      VVA+D LD + I GV   + DF 
Sbjct: 61  KYGLLKPGDIVVDLGAAPGGWSQVAANRVKAADGRGAVVALDYLDFDAIPGVTILQQDFT 120

Query: 121 DLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           D  +   +   + G  P+ VLSDMA PT GHR+ DHLR M L E A  FA+ ++  GG F
Sbjct: 121 DPVADGRLLDMLAGRRPNAVLSDMAAPTTGHRQTDHLRIMGLAEEALAFAVRVMAPGGFF 180

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K FQGG+   +L +LK+ F  V H+KP ASRAES E+++LA GFR
Sbjct: 181 LSKVFQGGSEKSLLDVLKRDFATVRHIKPKASRAESPELYVLATGFR 227


>gi|261400135|ref|ZP_05986260.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           lactamica ATCC 23970]
 gi|269210130|gb|EEZ76585.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           lactamica ATCC 23970]
          Length = 206

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL MEPI GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEPIGGVSFIQGDFRENDVLAQFEGLLNNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|91205935|ref|YP_538290.1| ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           RML369-C]
 gi|157826704|ref|YP_001495768.1| ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           OSU 85-389]
 gi|122425326|sp|Q1RHG3|RLME_RICBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040326|sp|A8GV60|RLME_RICB8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91069479|gb|ABE05201.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           RML369-C]
 gi|157802008|gb|ABV78731.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
           OSU 85-389]
          Length = 227

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/222 (45%), Positives = 153/222 (68%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A++EG+R+R+AYKLL+I+EK +I  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSSNWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N ++VDLG++PG WSQVA+++  +   N   +++++D+L++EPI GV+ F+ DF + D+
Sbjct: 66  PNMKVVDLGAAPGGWSQVASKLIKATDGNLKNKIISVDLLEIEPIPGVESFQKDFFEKDT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+VLSDMA  TIGH+  DH+RT+ LCE A  FAL++LN  G F+ K F
Sbjct: 126 EELIIQALKGKADIVLSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F  V H KP +SR ES E++L+A   +
Sbjct: 186 RGGAENELLNKVKREFSTVKHFKPSSSRKESTEIYLVALNRK 227


>gi|294142068|ref|YP_003558046.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           violacea DSS12]
 gi|293328537|dbj|BAJ03268.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           violacea DSS12]
          Length = 209

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV+ AQ  G R+R+A+KL +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWLQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G G 
Sbjct: 61  APGGWSQVAVKLAG---DRGKVIACDILAMDPIVGVDFLQGDFREEKVLDALLTRVGDGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     +++   G F VK FQG    + +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVMAPNGCFAVKVFQGEGFEEYMKS 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E++L+A G++
Sbjct: 178 VRAAFKTVKTRKPDSSRARSREVYLVATGYK 208


>gi|312170896|emb|CBX79155.1| cell division protein [Erwinia amylovora ATCC BAA-2158]
          Length = 209

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKHGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      GS     RV+A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDTK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMTGTPAVDIPRSMYLCELALEMCRDVLAPGGSFLVKVFQGDGFEEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|85058348|ref|YP_454050.1| 23S rRNA methyltransferase J [Sodalis glossinidius str.
           'morsitans']
 gi|123520134|sp|Q2NW30|RLME_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84778868|dbj|BAE73645.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 209

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MATKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ  A   G      R++A DIL M+P++GV F + DF +    + + + +G   
Sbjct: 61  APGGWSQYVATQIGGKG---RIIACDILPMDPMVGVDFLQGDFREPLVLQALLERVGEQK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG+FLVK FQG   ++ L  
Sbjct: 118 VQVVVSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGNFLVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|332970372|gb|EGK09364.1| ribosomal RNA large subunit methyltransferase J [Kingella kingae
           ATCC 23330]
          Length = 213

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  W++ H+NDPYVQRAQ +G+RAR+AYKLL+INEK +++++   + DLGS+PGSW
Sbjct: 11  RSKSSSAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKNGTALADLGSAPGSW 70

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQ+AA++ G      +V A+DIL M+ + GV F + DF +          +G  P DLV+
Sbjct: 71  SQIAAKLVGKEG---KVFALDILPMDALDGVDFIQGDFREESVLAQFENLLGNRPLDLVI 127

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+  +D  R+  LCE A  FA   L  GG+FLVK FQG    + +  +K  F
Sbjct: 128 CDMAPNMSGNAVMDQARSFYLCELALDFAQNHLKTGGNFLVKVFQGSGYQEYMAAMKTVF 187

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 188 ATVQTRKPDASRNRSSEIYLLGKNKR 213


>gi|157962886|ref|YP_001502920.1| 23S rRNA methyltransferase J [Shewanella pealeana ATCC 700345]
 gi|189040338|sp|A8H748|RLME_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157847886|gb|ABV88385.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella pealeana ATCC
           700345]
          Length = 209

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  W+  H +D YV+ +Q  G R+R+A+K+ +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ+A ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G   
Sbjct: 61  APGGWSQIAVKLAG---DKGKVIACDILPMDPIVGVDFLQGDFREEKVLDALLTRVGDAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   +D  R M L E A     ++L   G F VK FQG   ++ +  
Sbjct: 118 VDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F+ V   KP +SR  S E++L+A G++
Sbjct: 178 VKEAFKTVKTRKPDSSRPRSREVYLVATGYK 208


>gi|269103413|ref|ZP_06156110.1| 23S rRNA methylase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163311|gb|EEZ41807.1| 23S rRNA methylase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 209

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   GSS  WL  H +D YV  AQ +G+R+R+ +K+ +I +K ++L+    +VDLG+
Sbjct: 1   MSKKKHSGSSGRWLKEHFDDKYVLEAQKKGYRSRALFKIEEIQQKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA + G +    +V+A DIL M+P+ GV F + DF +    + + + I  + 
Sbjct: 61  APGGWSQYAAGVVGDDG---QVIACDILPMDPLPGVSFLQGDFREEAVLDALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFAVKVFQGEGFDQYLAD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR  S E++++A G++
Sbjct: 178 IRSMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|56551298|ref|YP_162137.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241760953|ref|ZP_04759042.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753080|ref|YP_003225973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|81355445|sp|Q5NQH8|RLME_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56542872|gb|AAV89026.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374572|gb|EER64033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552443|gb|ACV75389.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 221

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 147/225 (65%), Gaps = 12/225 (5%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K PG        Q+VK  R    +S  WL R +NDPYVQ+AQ EG+R+R+A+KL++++E+
Sbjct: 2   KTPG-------HQRVKTARRRTAASTRWLERQLNDPYVQKAQAEGYRSRAAFKLIELDER 54

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
             +L++ RRI+DLG +PG WSQVA +     A   ++V ID+L+  PI GV  F+ DF D
Sbjct: 55  FSLLKNARRIIDLGIAPGGWSQVARK----KAPQAKIVGIDLLEAAPIEGVTIFQNDFTD 110

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            ++ + + +A+GG  DLVLSDMA  TIGH + DHLRTM+L E A  FA E L  GG F+ 
Sbjct: 111 PEAQKKLIEALGGAADLVLSDMAANTIGHAQTDHLRTMALVEEAAVFASETLREGGSFVA 170

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K   GG   D++ LLK+ F +V H KP ASR ES E +++A+ FR
Sbjct: 171 KVLAGGADKDLVALLKRLFGQVKHAKPPASRRESSEWYVIAQNFR 215


>gi|188532497|ref|YP_001906294.1| 23S rRNA methyltransferase J [Erwinia tasmaniensis Et1/99]
 gi|226703304|sp|B2VGT0|RLME_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|188027539|emb|CAO95386.1| Ribosomal RNA large subunit methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 209

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      GS     RV+A DIL M+PI+GV F + DF +    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFREELVLKALLERVGETK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMTGTPAVDIPRSMYLCELALAMCRDVLAPGGSFLVKVFQGDGFEEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|114762829|ref|ZP_01442261.1| ribosomal RNA large subunit methyltransferase J [Pelagibaca
           bermudensis HTCC2601]
 gi|114544439|gb|EAU47446.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
           HTCC2601]
          Length = 238

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 145/237 (61%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSRRGLTQ---KVKNRSCQG---SSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +  G  Q   KVK +S +G   SS  WL R +NDPYV+RA+ EG+R R+A+K
Sbjct: 1   MAKKPTGKNTSGRGQRDLKVKVKSARGRTTSSTRWLQRQLNDPYVKRAKDEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPI 109
           +L+++EK++ L    R+VDLG +PG W QVA          S      V+ +D+ ++ PI
Sbjct: 61  ILELDEKYRFLVPGARVVDLGCAPGGWCQVAVPRVNALGERSGKAQGFVLGVDLQEVLPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +  + DF++  + + ++  +GG  D+V+SDMA  + GH++ DHLR +SLCEAA   A
Sbjct: 121 PGAEIHQLDFMEEGADDKVKAWLGGKADVVMSDMAASSSGHKQTDHLRIISLCEAAAELA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG    +  LLKK F KV +VKP ASR++S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEQGLQALLKKRFDKVANVKPPASRSDSSEKFVVATGFR 237


>gi|327396254|dbj|BAK13676.1| ribosomal RNA large subunit methyltransferase J RrmJ [Pantoea
           ananatis AJ13355]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   +  GS     RV+A DIL M+PI+GV F + DF +    + + + +G   
Sbjct: 61  APGGWSQYVVQQIGSKG---RVIACDILPMDPIVGVDFLQGDFREESVIKALLERVGEQK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDILAPGGSFVVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|308050591|ref|YP_003914157.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632781|gb|ADN77083.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS+ WL  H +D YV++AQ +G R+R+ +KL +I  K ++L+   ++VDLG+
Sbjct: 1   MTKKKHSASSKRWLTEHFDDQYVKKAQKQGLRSRAVFKLEEIQGKDRLLKPGMKVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G +     V+A DIL M+PI GV F + DF +      +   IG   
Sbjct: 61  APGGWSQYATEQVGQDGM---VIACDILPMDPIAGVDFLQGDFREEAVLNALLTHIGDEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNFSGAGAVDQPRAMYLVELAFDMCHQVLKKNGAFVVKVFQGEGFDQYLQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP +SRA S E++++A G++
Sbjct: 178 VRSVFGNVKIRKPDSSRARSREVYIVASGYK 208


>gi|157368729|ref|YP_001476718.1| 23S rRNA methyltransferase J [Serratia proteamaculans 568]
 gi|189040332|sp|A8G900|RLME_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157320493|gb|ABV39590.1| ribosomal RNA large subunit methyltransferase J [Serratia
           proteamaculans 568]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G    + R++A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIG---GSGRIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGESK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALGMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|163750817|ref|ZP_02158052.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           benthica KT99]
 gi|161329512|gb|EDQ00506.1| ribosomal RNA large subunit methyltransferase J [Shewanella
           benthica KT99]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV+ AQ  G R+R+A+KL +I EK ++++    +VDLG+
Sbjct: 1   MSGKKRTASSSRWLQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDKLIRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQVA ++ G   +  +V+A DIL M+PI+GV F + DF +    + +   +G G 
Sbjct: 61  APGGWSQVAVKLVG---DRGKVIACDILAMDPIVGVDFLQGDFREEKVLDALLTRVGDGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G   ID  R M L E A     +++   G F VK FQG    + +  
Sbjct: 118 VDVVLSDMAPNMSGSGGIDQPRAMYLVELALDMCHQVMAPNGCFAVKVFQGEGFEEYMKS 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+KV   KP +SRA S E++L+A G++
Sbjct: 178 VRAAFKKVKTRKPDSSRARSREVYLVATGYK 208


>gi|325276157|ref|ZP_08141962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
 gi|324098694|gb|EGB96735.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
          Length = 208

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 4   RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    + I  A+G  + DLV+
Sbjct: 64  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAVLQQILDAVGDSHVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G  ++D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F
Sbjct: 121 SDMAPNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLKDVRTKF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LL KGF+
Sbjct: 181 DKVQMRKPSSSRDRSREQYLLGKGFK 206


>gi|304396340|ref|ZP_07378221.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. aB]
 gi|304355849|gb|EFM20215.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. aB]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +A  +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSGRWLQEHFSDKYVLQAHKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   +  G+     RV+A DIL M+PI+GV F + DF +      + + +G   
Sbjct: 61  APGGWSQYVVQQIGNKG---RVIACDILPMDPIVGVDFLQGDFREESVINALLERVGDQK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|238761761|ref|ZP_04622735.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           kristensenii ATCC 33638]
 gi|238699875|gb|EEP92618.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           kristensenii ATCC 33638]
          Length = 213

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+   GSS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMSNKKRSGSSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ      G      RV+A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYVVTQIGGKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++
Sbjct: 118 GDKKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 YLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 212


>gi|320540170|ref|ZP_08039825.1| 23S rRNA methyltransferase [Serratia symbiotica str. Tucson]
 gi|320029836|gb|EFW11860.1| 23S rRNA methyltransferase [Serratia symbiotica str. Tucson]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    IVDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R+VA DIL ++PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIG---GAGRIVACDILPIDPIVGVDFLQGDFRDELVLKALLERVGESK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|75676335|ref|YP_318756.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter winogradskyi
           Nb-255]
 gi|83305662|sp|Q3SQN7|RLME_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|74421205|gb|ABA05404.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter winogradskyi
           Nb-255]
          Length = 230

 Score =  259 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/227 (44%), Positives = 143/227 (62%), Gaps = 5/227 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKNR-SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M K         L   VK     + SS+ WL R +NDPYV +A+ +GWR+R+++KL++++
Sbjct: 1   MAKDTTGR----LHVTVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGWRSRASFKLIEMD 56

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +KH+ L+    +VDLG++PG WSQVAA+  G+     RV+AID+L+M  I+GV F + DF
Sbjct: 57  DKHRFLKPGMTVVDLGAAPGGWSQVAAKRVGAAEGKGRVIAIDLLEMPEIVGVTFARLDF 116

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           LD  + + +   + G  D+VLSDMA  T GHRK D LR + L E+A  F  ++L  GG F
Sbjct: 117 LDDSAPDKLLAMMDGAADVVLSDMAANTTGHRKTDQLRIVGLVESAAAFTSDVLRPGGTF 176

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K FQ G    +L  LK+ FQ V HVKP ASR +S E +++A GFR
Sbjct: 177 IAKVFQSGADAGLLVQLKRDFQTVRHVKPAASRQDSSERYVMATGFR 223


>gi|300022350|ref|YP_003754961.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524171|gb|ADJ22640.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 242

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 145/222 (65%), Gaps = 2/222 (0%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S  +R L   VK  R    SS  WL R +NDPYV  ++ EG R+R+AYKL +I+ ++  L
Sbjct: 16  SGGQRQLHTAVKTARKRSVSSARWLERQLNDPYVAASKREGLRSRAAYKLREIDARYNFL 75

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R++DLG++PG WSQVAA    S     +VVAID L  EPI GV   + DF D ++ 
Sbjct: 76  KPGQRVIDLGAAPGGWSQVAAESVKSVGGKGQVVAIDYLSFEPIPGVDIIEMDFTDPNAE 135

Query: 126 EFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           + ++  + GG  D+VLSDMA PT+GH K DHLR M L EAA  FA ++L  GG FL K F
Sbjct: 136 DLLKSRLRGGKADVVLSDMAAPTVGHAKTDHLRIMGLAEAAAAFAADVLEPGGVFLCKVF 195

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           QGGT  D+L +LK+ F+ V HVKP ASR ES E+++LA GFR
Sbjct: 196 QGGTERDLLDMLKRDFKVVRHVKPPASRQESSELYVLATGFR 237


>gi|308189106|ref|YP_003933237.1| cell division protein [Pantoea vagans C9-1]
 gi|308059616|gb|ADO11788.1| cell division protein [Pantoea vagans C9-1]
          Length = 209

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ   +  G+     R++A DIL M+PI+GV F + DF +      + + +G   
Sbjct: 61  APGGWSQYVVQQIGNKG---RIIACDILPMDPIVGVDFLQGDFREESVINALLERVGDQK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILAPGGSFVVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|170719899|ref|YP_001747587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
 gi|226705301|sp|B1J262|RLME_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|169757902|gb|ACA71218.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
          Length = 208

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 4   RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF   +  + I  A+G  + DLV+
Sbjct: 64  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTQDEVLQQILDAVGDSHVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G  ++D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F
Sbjct: 121 SDMAPNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLKDVRTKF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LL KGF+
Sbjct: 181 DKVQMRKPSSSRDRSREQYLLGKGFK 206


>gi|104780020|ref|YP_606518.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
           entomophila L48]
 gi|143461104|sp|Q1IF51|RLME_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|95109007|emb|CAK13703.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
           [Pseudomonas entomophila L48]
          Length = 208

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 4   RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF   +  + I QA+G  + DLV+
Sbjct: 64  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTQDEVLQQILQAVGDSHVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F
Sbjct: 121 SDMAPNMSGTPAVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLKDVRSKF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LL KGF+
Sbjct: 181 DKVQMRKPSSSRDRSREQYLLGKGFK 206


>gi|294634507|ref|ZP_06713042.1| ribosomal RNA large subunit methyltransferase J [Edwardsiella tarda
           ATCC 23685]
 gi|291092021|gb|EFE24582.1| ribosomal RNA large subunit methyltransferase J [Edwardsiella tarda
           ATCC 23685]
          Length = 208

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 116/209 (55%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I    +I +    +VDLG++P
Sbjct: 2   GKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGTDKIFRPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WSQ      G   +  RV+A D+L M+PI+GV F + DF D      + + +G     
Sbjct: 62  GGWSQYVVTQIG---DKGRVIACDLLPMDPIVGVDFLQGDFRDELVLAALMERVGDAKVQ 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNMSGTPSVDIPRAMYLVELALEMAKDVLAPGGSFVVKVFQGEGFDEYLGQIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP ASRA S E++++A G +
Sbjct: 179 SLFTKVKIRKPEASRARSREVYIVATGRK 207


>gi|311277847|ref|YP_003940078.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cloacae SCF1]
 gi|308747042|gb|ADO46794.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cloacae SCF1]
          Length = 209

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G N    R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIGGNG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALQMCRDVLAPGGSFLVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTTVKVRKPDSSRARSREVYIVATGRK 208


>gi|239948521|ref|ZP_04700274.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|241563460|ref|XP_002401713.1| cell division protein FtsJ, putative [Ixodes scapularis]
 gi|215501905|gb|EEC11399.1| cell division protein FtsJ, putative [Ixodes scapularis]
 gi|239922797|gb|EER22821.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 227

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 103/222 (46%), Positives = 158/222 (71%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK+ +    SS +WL R +NDPYV +A++EG+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKSSKKRTVSSNNWLKRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N+ N ++++ID+L++EPI GV+FF+ DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNSLNNKIISIDLLEIEPIAGVEFFQKDFFEEDT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQALDGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAKNELLNKVKREFRTVKHFKPSSSRSESTEIYLVALNKK 227


>gi|259907035|ref|YP_002647391.1| 23S rRNA methyltransferase J [Erwinia pyrifoliae Ep1/96]
 gi|224962657|emb|CAX54112.1| Ribosomal RNA large subunit methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476831|emb|CAY72669.1| cell division protein [Erwinia pyrifoliae DSM 12163]
 gi|310766247|gb|ADP11197.1| 23S rRNA methyltransferase J [Erwinia sp. Ejp617]
          Length = 209

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKHGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      GS     RV+A DIL M+PI+GV F + DF +    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGSKG---RVIACDILPMDPIVGVDFLQGDFREELVLKALLERVGDTQ 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M LCE A     ++L  GG FLVK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMTGTPAVDIPRSMYLCELALEMCRDVLAPGGSFLVKVFQGDGFEEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|229592644|ref|YP_002874763.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|259494568|sp|C3K267|RLME_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|229364510|emb|CAY52363.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 216

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 123/206 (59%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WL  H NDPYV++AQ +G+R+R++YKLL+I +K ++++    ++DLG++PG W
Sbjct: 3   RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F   DF        I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFVHGDFTQDTVLAQILEAVGNSQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFLVK FQG   ++    ++K F
Sbjct: 120 SDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHKNIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LL +GFR
Sbjct: 180 DKVQTRKPDSSRDRSREQYLLCRGFR 205


>gi|238797559|ref|ZP_04641056.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           mollaretii ATCC 43969]
 gi|238718556|gb|EEQ10375.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+   GSS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSGSSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G+     RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIGAKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMCDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|156935701|ref|YP_001439617.1| 23S rRNA methyltransferase J [Cronobacter sakazakii ATCC BAA-894]
 gi|156533955|gb|ABU78781.1| hypothetical protein ESA_03570 [Cronobacter sakazakii ATCC BAA-894]
          Length = 213

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +V
Sbjct: 1   MECEMTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYVVTQIG---GAGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERV 117

Query: 133 GG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++
Sbjct: 118 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 YLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 212


>gi|251791042|ref|YP_003005763.1| 23S rRNA methyltransferase J [Dickeya zeae Ech1591]
 gi|247539663|gb|ACT08284.1| ribosomal RNA large subunit methyltransferase J [Dickeya zeae
           Ech1591]
          Length = 209

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDILAPGGSFVVKVFQGVGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTTVKIRKPDASRARSREVYIVATGRK 208


>gi|254460971|ref|ZP_05074387.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2083]
 gi|206677560|gb|EDZ42047.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 244

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 149/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK+ R  + SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 1   MAKTPTGKNNSGRGQRDLTVKVKSARGRRMSSTLWLQRQLNDPYVKRAQAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPI 109
           ++++++K++ L    R+VDLG +PG W QVA     +  +        ++ IDI ++E +
Sbjct: 61  IMELDDKYRFLVPGARVVDLGCAPGGWCQVAVPRINALGDRRGKSVGTLLGIDIQEVETM 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F   DFLD  + + +++ +GG  D+V+SDMA  + GH++ DHLR M LCE A +FA
Sbjct: 121 AGAEFHVLDFLDEGADDKVKEWLGGEADVVMSDMAASSSGHKQTDHLRIMHLCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK++F KV H+KP +SR++S E F++A GF+
Sbjct: 181 FDVLAEGGTFVAKVLAGGAEGDLQKLLKQNFTKVAHMKPPSSRSDSSEKFVVATGFK 237


>gi|221134032|ref|ZP_03560337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola sp. HTCC2999]
          Length = 206

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 127/202 (62%), Gaps = 4/202 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ W+  H+NDPYV++AQ++G+R+R++YKL++INEK Q+++    ++DLGS+PG WSQV 
Sbjct: 7   SKKWMEDHLNDPYVKKAQVDGYRSRASYKLIEINEKDQLVRPGNIVMDLGSAPGGWSQVL 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
           A + G   +  RV+A DIL M+ I+GV F + DF D   +  I + +G +  D V+SDMA
Sbjct: 67  APMVG---DAGRVIASDILPMDSIVGVSFLQGDFTDEAVYNAILKELGDDRVDTVVSDMA 123

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G+   D   ++ L E A   A  +L  GG F  K FQG    + +  +++ F KVI
Sbjct: 124 PNLSGNNTTDQYSSIYLVELALDMARNVLKPGGGFCAKVFQGVGYEEYVKEVRQSFSKVI 183

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E++++ KGF+
Sbjct: 184 IRKPAASRPRSREVYVVGKGFK 205


>gi|89068308|ref|ZP_01155718.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           granulosus HTCC2516]
 gi|89046225|gb|EAR52283.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
           granulosus HTCC2516]
          Length = 236

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 151/235 (64%), Gaps = 9/235 (3%)

Query: 1   MVKPPGSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K    SS RG   LT KVK  R  + SS  WL R +NDPYV+RA+ +G+R R+AYK+L
Sbjct: 1   MAKKTRKSSGRGQRDLTVKVKTARGRKLSSTLWLQRQLNDPYVKRAKADGYRGRAAYKIL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILG 111
           ++++K++ L    R+VDLG +PG W QVA R T      S+    +V+ ID+ ++EPI G
Sbjct: 61  ELDDKYRFLVPGARVVDLGCAPGGWCQVAVRRTNALGERSDKAVGKVLGIDLQEVEPIAG 120

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  + DFL  D+ E ++  + G  D+V+SDMA    GH++ DHLR ++LCEAA +FA +
Sbjct: 121 AEIHQLDFLADDADEQVKDWLAGPADVVMSDMAASASGHKQTDHLRIVALCEAAAYFAFD 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG    +  LLK+ F KV++VKP ASRA+S E F++A GFR
Sbjct: 181 VLVEGGTFVAKVLAGGAEGSLQTLLKQRFTKVVNVKPPASRADSSEKFVVATGFR 235


>gi|315127241|ref|YP_004069244.1| 23S rRNA methyltransferase J [Pseudoalteromonas sp. SM9913]
 gi|315015755|gb|ADT69093.1| 23S rRNA methyltransferase J [Pseudoalteromonas sp. SM9913]
          Length = 209

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL +I  K ++L+    +VDLG+
Sbjct: 1   MTNKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEIQNKDKLLRPAMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PGSWSQ  A   G   +  +VVA DIL M+ + GV F + DF +    + + + I G  
Sbjct: 61  APGSWSQYLAEKVG---DKGQVVACDILPMDSLAGVDFLQGDFREEAVLDALLKRIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQYLQD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASR  S E++++A G++
Sbjct: 178 VRNSFKAVKIRKPDASRPRSREVYIVATGYK 208


>gi|126729852|ref|ZP_01745665.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
           E-37]
 gi|126709971|gb|EBA09024.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
           E-37]
          Length = 236

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 9/235 (3%)

Query: 1   MVKPPGSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K P +SS RG   L  KVK  R  + SS  WL R +NDPYV+RA+ EG+R R+A+K+L
Sbjct: 1   MAKGPKNSSGRGQRDLKVKVKTARGRKLSSTLWLQRQLNDPYVKRAKEEGYRGRAAFKIL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILG 111
           +I+EK++ L    R+VDLG +PG W QVAAR   S           V+ ID+ +++ I G
Sbjct: 61  EIDEKYRFLVPGARVVDLGCAPGGWCQVAARRVNSLGEKPGKAQGFVLGIDLQEVDAIAG 120

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
           V+  + DFL+  + + ++  +GG+  +V+SDMA  + GH++ DHLR ++LCEAA   A +
Sbjct: 121 VELHQLDFLEDGADDKVKGWLGGSAHVVMSDMAAASSGHKQTDHLRIITLCEAAAELAFD 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG    +   LK+ F KV + KP ASR++S E F++A GFR
Sbjct: 181 VLEEGGTFVAKVLAGGAEGTLQATLKRRFAKVANFKPPASRSDSSEKFVVATGFR 235


>gi|318607368|emb|CBY28866.1| cell division protein FtsJ; ribosomal RNA large subunit
           methyltransferase E [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 209

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G   +  RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIG---DKGRVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+ DMA    G   +D  ++M L E A     ++L  GG+FLVK FQG   ++ L  
Sbjct: 118 VQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGNFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|70734330|ref|YP_257970.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           fluorescens Pf-5]
 gi|83305665|sp|Q4KIG3|RLME_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|68348629|gb|AAY96235.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           fluorescens Pf-5]
          Length = 209

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 126/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H NDP+V+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +      I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSEVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   ++    +++ F
Sbjct: 120 SDMAPNMSGLAAVDMPRAMFLCELALDLAGRVLRPGGDFLIKIFQGEGFDEYHKSVRQMF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           +KV   KP +SR  S E +LL +GFR
Sbjct: 180 EKVQMRKPSSSRDRSREQYLLGRGFR 205


>gi|332160072|ref|YP_004296649.1| 23S rRNA methyltransferase J [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664302|gb|ADZ40946.1| 23S rRNA methyltransferase J [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862037|emb|CBX72203.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           enterocolitica W22703]
          Length = 209

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G      RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+ DMA    G   +D  ++M L E A     ++L  GG+FLVK FQG   ++ L  
Sbjct: 118 VQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGNFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|298368448|ref|ZP_06979766.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282451|gb|EFI23938.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 206

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/205 (43%), Positives = 123/205 (60%), Gaps = 4/205 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
             SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWS
Sbjct: 5   SKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKRGTVLADLGSAPGSWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           QVAA++ G   ++ +V A+DIL M+ I GV F + DF + D        + G P DLV+ 
Sbjct: 65  QVAAKLVG---DSGKVFALDILPMDEIEGVSFIQGDFREDDVLARFESLLAGRPLDLVIC 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G+   D  R+  LCE A  FA   L  GG+FLVK FQG    +    ++  F 
Sbjct: 122 DMAPNMSGNAVTDQARSYYLCELALDFAANHLKTGGNFLVKVFQGAGFQEYTAAMRAVFS 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP ASR  S E++LL +  R
Sbjct: 182 TVQTRKPEASRNRSSEIYLLGRNKR 206


>gi|238787587|ref|ZP_04631385.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           frederiksenii ATCC 33641]
 gi|238724374|gb|EEQ16016.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           frederiksenii ATCC 33641]
          Length = 213

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +V
Sbjct: 1   MEKEMSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKIFKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++
Sbjct: 118 GDKKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 YLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 212


>gi|119471556|ref|ZP_01613970.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
 gi|119445499|gb|EAW26785.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
          Length = 209

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL ++  + ++L+    +VDLG+
Sbjct: 1   MTNKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PGSWSQ  A   G   +  +VVA DIL M+ + GV F + DF +    + + + I G  
Sbjct: 61  APGSWSQYLAEKVG---DKGQVVACDILPMDSLAGVDFLQGDFREEAVLDALLKRIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQYLQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASRA S E++++A G++
Sbjct: 178 VRNSFKAVKIRKPDASRARSREVYIVATGYK 208


>gi|238757569|ref|ZP_04618754.1| Ribosomal RNA large subunit methyltransferase J [Yersinia aldovae
           ATCC 35236]
 gi|238704331|gb|EEP96863.1| Ribosomal RNA large subunit methyltransferase J [Yersinia aldovae
           ATCC 35236]
          Length = 209

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G      RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIGGKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMCDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|89072568|ref|ZP_01159140.1| 23S rRNA methylase [Photobacterium sp. SKA34]
 gi|90580530|ref|ZP_01236335.1| 23S rRNA methylase [Vibrio angustum S14]
 gi|89051672|gb|EAR57125.1| 23S rRNA methylase [Photobacterium sp. SKA34]
 gi|90438188|gb|EAS63374.1| 23S rRNA methylase [Photobacterium angustum S14]
          Length = 209

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   GSS  WL  H +D YVQ AQ  G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSRKKQSGSSGRWLKEHFDDKYVQEAQKRGYRSRAFFKIEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA I GS     +V+A DIL M+ + GV F + DF +    + +   I  + 
Sbjct: 61  APGGWSQYAAEIVGSEG---QVIACDILPMDSLPGVSFLQGDFREEAVLDALLDRIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFTVKVFQGEGFDQYLAE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR  S E++++A G++
Sbjct: 178 IRSMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|157964230|ref|YP_001499054.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
           massiliae MTU5]
 gi|157844006|gb|ABV84507.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
           massiliae MTU5]
          Length = 272

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 101/223 (45%), Positives = 156/223 (69%), Gaps = 4/223 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++  
Sbjct: 50  SGYRNKFIRVKTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFT 109

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N  N ++++ID+L++EP+ GV+FF+ DF + D+
Sbjct: 110 PNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDVLEIEPVAGVEFFQKDFFEADT 169

Query: 125 WEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            E I QA+ G   D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K 
Sbjct: 170 EELIIQALDGSRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKI 229

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 230 FRGGAENELLNKVKREFKTVKHFKPSSSRSESTEIYLVALNKK 272


>gi|119897677|ref|YP_932890.1| ribosomal RNA large subunit methyltransferase J [Azoarcus sp. BH72]
 gi|143459390|sp|A1K598|RLME_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119670090|emb|CAL94003.1| ribosomal RNA large subunit methyltransferase j [Azoarcus sp. BH72]
          Length = 205

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W++ H+ND YVQRA  EG+RAR+AYKL++I+E+ ++L+  R +VDLG++PGS
Sbjct: 2   KRNKTSKAWMHEHLNDTYVQRANAEGYRARAAYKLMEIDERDRLLRPGRVVVDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           W QVA +  GS+    RV+A+DIL M+P+ GV F + DF +      +   + G   DLV
Sbjct: 62  WCQVARQRVGSDG---RVLALDILPMDPVPGVDFLQGDFTEDAVLAELESRLAGAAVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R++ LCE A  FA   L  GG FLVK FQG         + + 
Sbjct: 119 LSDMAPNLSGVATVDQARSIYLCELALDFARRHLKPGGQFLVKVFQGEGFMGFRKAMDEV 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASR  S E++LL    R
Sbjct: 179 FLSVQVRKPKASRDRSAEVYLLGVDLR 205


>gi|121634592|ref|YP_974837.1| putative cell division protein [Neisseria meningitidis FAM18]
 gi|158513144|sp|A1KT57|RLME_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120866298|emb|CAM10039.1| putative cell division protein [Neisseria meningitidis FAM18]
          Length = 206

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREFF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|261378830|ref|ZP_05983403.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
           ATCC 14685]
 gi|269144809|gb|EEZ71227.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
           ATCC 14685]
          Length = 206

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGS
Sbjct: 3   SRSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGS 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVAA++ G +     V A+DIL ME + GV F + DF + D        +   P DLV
Sbjct: 63  WSQVAAKLAGPSGA---VFALDILPMEAVNGVSFIQGDFRENDVLAQFETLLNNRPLDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + DMA    G+   D  R++ LCE A  FA + L  GG FLVK FQG    + +  ++K 
Sbjct: 120 ICDMAPNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMRKV 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASR  S E++LL K  R
Sbjct: 180 FGTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|37528355|ref|NP_931700.1| 23S rRNA methyltransferase J [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418111|sp|Q7MYY0|RLME_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|36787793|emb|CAE16908.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) (Cell division protein FtsJ)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 209

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A      N    RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVSQISDNG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDNK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLAPEGSFIVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTNVKIRKPDASRARSREVYIVATGRK 208


>gi|283836275|ref|ZP_06356016.1| ribosomal RNA large subunit methyltransferase J [Citrobacter
           youngae ATCC 29220]
 gi|291067638|gb|EFE05747.1| ribosomal RNA large subunit methyltransferase J [Citrobacter
           youngae ATCC 29220]
          Length = 209

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    IVDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G   N+ R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIG---NSGRIIACDLLPMDPIVGVDFLQGDFRDELVLQALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRAMYLVELALGMARDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|224823864|ref|ZP_03696973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Lutiella nitroferrum
           2002]
 gi|224604319|gb|EEG10493.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Lutiella nitroferrum
           2002]
          Length = 205

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS DWL  H++D YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 3   RSKSSNDWLREHVHDHYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSAPGSW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAAR+ G   +  +V A+DIL M PI  V+F + DF + +  +     +GG   DLV+
Sbjct: 63  SQVAARLVG---DKGKVYALDILPMNPIADVEFIQGDFREQEVLDQFVALLGGRELDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID  R+  LCE A  F  + L  GG FLVK FQG      L  +++ F
Sbjct: 120 SDMAPNISGMSAIDQARSFHLCELALEFVRDHLKPGGSFLVKVFQGSDFQPYLKSMRELF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            +V+  KP ASR  S E++LL KG R
Sbjct: 180 DEVVSRKPKASRDRSTEIYLLGKGRR 205


>gi|194098119|ref|YP_002001167.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
 gi|239998575|ref|ZP_04718499.1| putative cell division protein [Neisseria gonorrhoeae 35/02]
 gi|240080282|ref|ZP_04724825.1| putative cell division protein [Neisseria gonorrhoeae FA19]
 gi|240115234|ref|ZP_04729296.1| putative cell division protein [Neisseria gonorrhoeae PID18]
 gi|240123075|ref|ZP_04736031.1| putative cell division protein [Neisseria gonorrhoeae PID332]
 gi|240125327|ref|ZP_04738213.1| putative cell division protein [Neisseria gonorrhoeae SK-92-679]
 gi|240127779|ref|ZP_04740440.1| putative cell division protein [Neisseria gonorrhoeae SK-93-1035]
 gi|254493296|ref|ZP_05106467.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
 gi|260440948|ref|ZP_05794764.1| putative cell division protein [Neisseria gonorrhoeae DGI2]
 gi|268594434|ref|ZP_06128601.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae 35/02]
 gi|268596430|ref|ZP_06130597.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae FA19]
 gi|268600914|ref|ZP_06135081.1| cell division protein [Neisseria gonorrhoeae PID18]
 gi|268681701|ref|ZP_06148563.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
 gi|268683928|ref|ZP_06150790.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686171|ref|ZP_06153033.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044276|ref|ZP_06569985.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae DGI2]
 gi|226703876|sp|B4RK82|RLME_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|193933409|gb|ACF29233.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512336|gb|EEH61681.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
 gi|268547823|gb|EEZ43241.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae 35/02]
 gi|268550218|gb|EEZ45237.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae FA19]
 gi|268585045|gb|EEZ49721.1| cell division protein [Neisseria gonorrhoeae PID18]
 gi|268621985|gb|EEZ54385.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
 gi|268624212|gb|EEZ56612.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626455|gb|EEZ58855.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011170|gb|EFE03166.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae DGI2]
 gi|317163849|gb|ADV07390.1| putative cell division protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 206

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ HIND YV  AQ +G+RAR+AYKLL+INEK +I++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHINDHYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGT---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|50119645|ref|YP_048812.1| 23S rRNA methyltransferase J [Pectobacterium atrosepticum SCRI1043]
 gi|81646184|sp|Q6D9B9|RLME_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|49610171|emb|CAG73611.1| ribosomal RNA large subunit methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 209

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A DIL M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLAPGGSFLVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|271499167|ref|YP_003332192.1| ribosomal RNA large subunit methyltransferase J [Dickeya dadantii
           Ech586]
 gi|270342722|gb|ACZ75487.1| ribosomal RNA large subunit methyltransferase J [Dickeya dadantii
           Ech586]
          Length = 209

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDILAPGGSFVVKVFQGVGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTTVKIRKPDASRARSREVYIVATGRK 208


>gi|307129377|ref|YP_003881393.1| cell division protein ftsJ/Ribosomal RNA large subunit
           methyltransferase J [Dickeya dadantii 3937]
 gi|306526906|gb|ADM96836.1| Cell division protein ftsJ / Ribosomal RNA large subunit
           methyltransferase J [Dickeya dadantii 3937]
          Length = 209

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G  ++D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPEVDIPRAMYLVELALDMCRDILAPGGSFVVKVFQGVGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTTVKIRKPDASRARSREVYIVATGRK 208


>gi|237730099|ref|ZP_04560580.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
 gi|226908705|gb|EEH94623.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
          Length = 209

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    IVDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G+     R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIGNTG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRAMYLVELALGMARDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|319638318|ref|ZP_07993081.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           C102]
 gi|317400591|gb|EFV81249.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           C102]
          Length = 206

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 119/206 (57%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+
Sbjct: 64  SQVAAKLVGKTGA---VFALDILPMDAIDGVSFIQGDFREDAVLEQFEALLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    + + F
Sbjct: 121 CDMAPNMSGNAVTDQARSFYLCELALDFASQHLKPGGSFLVKVFQGAGYQEYTAAMSEIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 ASVQTRKPDASRNRSSEIYLLGKNKR 206


>gi|330447384|ref|ZP_08311033.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491575|dbj|GAA05530.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 209

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   GSS  WL  H +D YV  AQ  G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSRKKQSGSSGRWLKEHFDDKYVLEAQKRGYRSRAFFKIEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA + G   +  +V+A DIL M+ + GV F + DF +    E + + I  + 
Sbjct: 61  APGGWSQYAAEVVG---DEGQVIACDILPMDSLPGVSFLQGDFREEAVLEALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFAVKVFQGEGFDQYLAE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR  S E++++A G++
Sbjct: 178 VRSMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|86138870|ref|ZP_01057442.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           MED193]
 gi|85824517|gb|EAQ44720.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
           MED193]
          Length = 243

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/230 (40%), Positives = 148/230 (64%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R L  KVK+ R  + SS  WL R +NDPYV+RAQ EG+R R+AYK++++++K
Sbjct: 13  KNTSGRGQRDLKVKVKSARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDK 72

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFK 116
           ++ L    R+VDLG +PG W+QVA +              R++ +D+ ++EP+ G +F  
Sbjct: 73  YRFLVPGARVVDLGCAPGGWAQVAVKRINVMGEKRGKAQGRIIGVDLQEIEPLAGAEFHT 132

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHL+ ++LCEAA +FA ++L  G
Sbjct: 133 LDFMDEGADDQVKEWLGGKADVVMSDMAASSSGHKQTDHLKIIALCEAAAYFAFDVLEEG 192

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   ++  LLK  F KV +VKP +SR++S E F++A G++
Sbjct: 193 GTFVAKVLAGGAEGELQKLLKNKFTKVANVKPPSSRSDSSEKFVVAMGYK 242


>gi|162419181|ref|YP_001608279.1| 23S rRNA methyltransferase J [Yersinia pestis Angola]
 gi|165928158|ref|ZP_02223990.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937481|ref|ZP_02226044.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011366|ref|ZP_02232264.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214008|ref|ZP_02240043.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401245|ref|ZP_02306745.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420655|ref|ZP_02312408.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423579|ref|ZP_02315332.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|270489129|ref|ZP_06206203.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           KIM D27]
 gi|294505365|ref|YP_003569427.1| cell division protein [Yersinia pestis Z176003]
 gi|21957398|gb|AAM84269.1|AE013670_6 cell division protein [Yersinia pestis KIM 10]
 gi|45435291|gb|AAS60850.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162351996|gb|ABX85944.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Angola]
 gi|165914586|gb|EDR33200.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919845|gb|EDR37146.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989750|gb|EDR42051.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204803|gb|EDR49283.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961461|gb|EDR57482.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049270|gb|EDR60678.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057749|gb|EDR67495.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|262363431|gb|ACY60152.1| cell division protein [Yersinia pestis D106004]
 gi|262367195|gb|ACY63752.1| cell division protein [Yersinia pestis D182038]
 gi|270337633|gb|EFA48410.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           KIM D27]
 gi|294355824|gb|ADE66165.1| cell division protein [Yersinia pestis Z176003]
          Length = 213

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKQGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ A    GS     RV+A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYAVTQIGSKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++
Sbjct: 118 GDKKVQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 YLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 212


>gi|238918417|ref|YP_002931931.1| 23S rRNA methyltransferase J [Edwardsiella ictaluri 93-146]
 gi|259494565|sp|C5BFB0|RLME_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|238867985|gb|ACR67696.1| ribosomal RNA large subunit methyltransferase J, putative
           [Edwardsiella ictaluri 93-146]
          Length = 208

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/209 (37%), Positives = 116/209 (55%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I    +I +    +VDLG++P
Sbjct: 2   GKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGTDKIFRPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WSQ      G   +  RV+A D+L M+PI+GV F + DF D      + + +G     
Sbjct: 62  GGWSQYVVTQIG---DKGRVIACDLLPMDPIVGVDFLQGDFRDELVLAALMERVGDAKVQ 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A   A ++L  GG F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNMSGTPSVDIPRAMYLVELAFEMAKDVLAPGGSFVVKVFQGEGFDEYLGQIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP ASRA S E++++A G +
Sbjct: 179 SLFTKVKIRKPEASRARSREVYIVATGRK 207


>gi|229586405|ref|YP_002844906.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
           ESF-5]
 gi|259494569|sp|C3PMK3|RLME_RICAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|228021455|gb|ACP53163.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
           ESF-5]
          Length = 227

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 154/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSSNWLRRQLNDPYVAKARMDGFRSRAAYKLLEIHEKFKLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N  N ++++ID+L++E + GV+F + DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQALDGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAENELLYKVKREFKTVKHFKPSSSRSESTEIYLVALNKK 227


>gi|238793015|ref|ZP_04636644.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           intermedia ATCC 29909]
 gi|238727615|gb|EEQ19140.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           intermedia ATCC 29909]
          Length = 213

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/215 (35%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYVVSQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++
Sbjct: 118 GDKKVQVVMSDMAPNMCGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 YLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 212


>gi|269137756|ref|YP_003294456.1| 23S rRNA methyltransferase J [Edwardsiella tarda EIB202]
 gi|267983416|gb|ACY83245.1| 23S rRNA methyltransferase J [Edwardsiella tarda EIB202]
 gi|304557813|gb|ADM40477.1| Cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [Edwardsiella tarda FL6-60]
          Length = 208

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 117/209 (55%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I    +I +    +VDLG++P
Sbjct: 2   GKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGSDKIFRPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WSQ      G   +  R++A D+L M+PI+GV F + DF D      + + +G     
Sbjct: 62  GGWSQYVVTQIG---DKGRIIACDLLPMDPIVGVDFLQGDFRDELVLGALMERVGDAKVQ 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R+M L E A   A ++L  GG F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNMSGTPSVDIPRSMYLVELALEMAKDVLAPGGSFVVKVFQGEGFDEYLGQIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV   KP ASRA S E++++A G +
Sbjct: 179 SLFTKVKIRKPDASRARSREVYIVATGRK 207


>gi|241758799|ref|ZP_04756912.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           flavescens SK114]
 gi|241321007|gb|EER57220.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           flavescens SK114]
          Length = 206

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+
Sbjct: 64  SQVAAKLVGKTGA---VFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    +++ F
Sbjct: 121 CDMAPNMSGNAVTDQARSFYLCELALDFAFQHLKTGGSFLVKVFQGAGYQEYTAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 ASVQTRKPDASRNRSSEIYLLGKNKR 206


>gi|26991402|ref|NP_746827.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida
           KT2440]
 gi|148549787|ref|YP_001269889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida F1]
 gi|81439657|sp|Q88DV0|RLME_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040322|sp|A5W995|RLME_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|24986472|gb|AAN70291.1|AE016670_1 ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
           KT2440]
 gi|148513845|gb|ABQ80705.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida F1]
 gi|313500628|gb|ADR61994.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas putida
           BIRD-1]
          Length = 207

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 4   RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF   +  + I +A+G  + DLV+
Sbjct: 64  SQVTSRLIG---GQGRLIASDILEMDSIADVTFIQGDFTHDEVLQRILEAVGDSHVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F
Sbjct: 121 SDMAPNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLKDVRSKF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LL +GF+
Sbjct: 181 DKVQMRKPSSSRDRSREQYLLGRGFK 206


>gi|229505742|ref|ZP_04395252.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae BX 330286]
 gi|229509225|ref|ZP_04398710.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae B33]
 gi|229512898|ref|ZP_04402365.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TMA 21]
 gi|229519566|ref|ZP_04409009.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae RC9]
 gi|229525289|ref|ZP_04414694.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae bv. albensis VL426]
 gi|229530441|ref|ZP_04419829.1| cell division protein ftsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae 12129(1)]
 gi|229608853|ref|YP_002879501.1| 23S rRNA methyltransferase J [Vibrio cholerae MJ-1236]
 gi|229332214|gb|EEN97702.1| cell division protein ftsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae 12129(1)]
 gi|229338870|gb|EEO03887.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae bv. albensis VL426]
 gi|229344255|gb|EEO09230.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae RC9]
 gi|229350147|gb|EEO15100.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TMA 21]
 gi|229353797|gb|EEO18733.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae B33]
 gi|229357965|gb|EEO22882.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae BX 330286]
 gi|229371508|gb|ACQ61931.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae MJ-1236]
          Length = 239

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG
Sbjct: 30  KMSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLG 89

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  +
Sbjct: 90  AAPGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPD 146

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D + 
Sbjct: 147 MVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVK 206

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 238


>gi|332535916|ref|ZP_08411626.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034703|gb|EGI71252.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 209

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL ++  + ++L+    +VDLG+
Sbjct: 1   MTNKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PGSWSQ  A   G   +  +V+A DIL M+ + GV F + DF +      + + I G  
Sbjct: 61  APGSWSQYLAEKVG---DKGQVIACDILPMDSLAGVDFLQGDFREEAVLNALLKRIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCSQVLKKNGAFIVKVFQGEGFDQYLQD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASRA S E++++A G++
Sbjct: 178 VRNSFKAVKIRKPDASRARSREVYIVATGYK 208


>gi|157828081|ref|YP_001494323.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932781|ref|YP_001649570.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
           Iowa]
 gi|189040328|sp|B0BWD8|RLME_RICRO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040329|sp|A8GQZ0|RLME_RICRS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|157800562|gb|ABV75815.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907868|gb|ABY72164.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
           Iowa]
          Length = 227

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 98/222 (44%), Positives = 154/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N ++VDLG++PG WSQVA+++  +  N  N ++++ID+L++E + GV+F + DF + D+
Sbjct: 66  PNMKVVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQALDGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLVALNKK 227


>gi|27365050|ref|NP_760578.1| 23S rRNA methyltransferase J [Vibrio vulnificus CMCP6]
 gi|37680900|ref|NP_935509.1| 23S rRNA methyltransferase J [Vibrio vulnificus YJ016]
 gi|320155433|ref|YP_004187812.1| cell division protein FtsJ/Ribosomal RNA large subunit
           methyltransferase E [Vibrio vulnificus MO6-24/O]
 gi|81448574|sp|Q8DBW7|RLME_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81756680|sp|Q7MI01|RLME_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|27361196|gb|AAO10105.1| Ribosomal RNA large subunit methyltransferase J [Vibrio vulnificus
           CMCP6]
 gi|37199650|dbj|BAC95480.1| 23S rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930745|gb|ADV85609.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase E [Vibrio vulnificus MO6-24/O]
          Length = 209

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +KL +I +K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSSRWLKEHFDDKYANEARRKGYRSRAIFKLEEIQQKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G   ++ RV+A DIL M+ I GV F + DF +    E + + I  + 
Sbjct: 61  APGGWSQYA---IGVVGDSGRVIACDILPMDSIAGVSFLQGDFREDAVLEALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   ++ +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDEYVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRNMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|87119799|ref|ZP_01075696.1| cell division protein FtsJ [Marinomonas sp. MED121]
 gi|86165275|gb|EAQ66543.1| cell division protein FtsJ [Marinomonas sp. MED121]
          Length = 196

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 133/198 (67%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H +D YV+R+Q +G+R+R++YKL++IN+K ++L+S  ++VDLG++PG WSQ+A R+ 
Sbjct: 1   MKEHFDDVYVKRSQQDGYRSRASYKLIEINDKDKLLKSGMKVVDLGAAPGGWSQIAGRLI 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
           G   +  RVVA DIL+M P+ GV F + DF + D ++ I +AIG  + DLV+SDMA    
Sbjct: 61  G---DKGRVVASDILEMAPLPGVTFVQGDFTEDDVYQEILKAIGDEHADLVISDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +D  ++M L E A   A ++L  GG+FLVK FQG   ++ L  ++  F  V+  KP
Sbjct: 118 GNSAVDQPQSMYLVELALDMASQVLRPGGNFLVKVFQGEGFDEYLKTMRGMFTSVVTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            +SRA S E++LL + F+
Sbjct: 178 ESSRARSREVYLLGRQFK 195


>gi|167035711|ref|YP_001670942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
 gi|189040323|sp|B0KHY6|RLME_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|166862199|gb|ABZ00607.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
          Length = 208

 Score =  257 bits (656), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS +WL  H NDP+V++AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 4   RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF   +  + I +A+G  + DLV+
Sbjct: 64  SQVTSRLIG---GQGRLIASDILEMDSIADVTFIQGDFTHDEVLQRILEAVGDSHVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +  L  ++  F
Sbjct: 121 SDMAPNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLKDVRSKF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LL +GF+
Sbjct: 181 DKVQMRKPSSSRDRSREQYLLGRGFK 206


>gi|229520927|ref|ZP_04410349.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TM 11079-80]
 gi|229342160|gb|EEO07156.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae TM 11079-80]
          Length = 239

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 4/212 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG
Sbjct: 30  KMSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLG 89

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  +
Sbjct: 90  AAPGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPD 146

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D + 
Sbjct: 147 MVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVK 206

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 238


>gi|238755149|ref|ZP_04616495.1| Ribosomal RNA large subunit methyltransferase J [Yersinia ruckeri
           ATCC 29473]
 gi|238706596|gb|EEP98967.1| Ribosomal RNA large subunit methyltransferase J [Yersinia ruckeri
           ATCC 29473]
          Length = 213

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/215 (35%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +++ N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +V
Sbjct: 1   MEKEMANKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +
Sbjct: 61  DLGAAPGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++
Sbjct: 118 GEKKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 YLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 212


>gi|238783522|ref|ZP_04627544.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           bercovieri ATCC 43970]
 gi|238715577|gb|EEQ07567.1| Ribosomal RNA large subunit methyltransferase J [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+   GSS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSGSSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQNDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPKSMYLVELALEMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|260869930|ref|YP_003236332.1| 23S rRNA methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257766286|dbj|BAI37781.1| 23S rRNA methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323178645|gb|EFZ64221.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1180]
 gi|324115217|gb|EGC09181.1| ribosomal RNA large subunit methyltransferase J [Escherichia
           fergusonii B253]
 gi|325498760|gb|EGC96619.1| 23S rRNA methyltransferase J [Escherichia fergusonii ECD227]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVNQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|261380964|ref|ZP_05985537.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
           NJ9703]
 gi|284796223|gb|EFC51570.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
           NJ9703]
          Length = 206

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+
Sbjct: 64  SQVAAKLVGKTGA---VFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    +++ F
Sbjct: 121 CDMAPNMSGNAVTDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYTAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 ASVQTRKPDASRNRSSEIYLLGKNKR 206


>gi|123440806|ref|YP_001004797.1| 23S rRNA methyltransferase J [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|143462176|sp|A1JIW2|RLME_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122087767|emb|CAL10553.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ      G      RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|28871632|ref|NP_794251.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213966655|ref|ZP_03394806.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
 gi|301383165|ref|ZP_07231583.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063400|ref|ZP_07254941.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato K40]
 gi|302133773|ref|ZP_07259763.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|81729678|sp|Q87WP7|RLME_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|28854884|gb|AAO57946.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213928505|gb|EEB62049.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
 gi|330877241|gb|EGH11390.1| FtsJ cell division protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016640|gb|EGH96696.1| FtsJ cell division protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 216

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK +I++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|237798555|ref|ZP_04587016.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|330958057|gb|EGH58317.1| FtsJ cell division protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
 gi|331021408|gb|EGI01465.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 216

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK +I++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|170765486|ref|ZP_02900297.1| ribosomal RNA large subunit methyltransferase J [Escherichia
           albertii TW07627]
 gi|170124632|gb|EDS93563.1| ribosomal RNA large subunit methyltransferase J [Escherichia
           albertii TW07627]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMQALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|225075313|ref|ZP_03718512.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
           NRL30031/H210]
 gi|224953488|gb|EEG34697.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
           NRL30031/H210]
          Length = 206

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 119/206 (57%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G       V A+DIL M+ I GV F + DF +    E     +   P DLV+
Sbjct: 64  SQVAAKLVGKTGA---VFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    +    + + F
Sbjct: 121 CDMAPNMSGNAVTDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYTATMHEIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 ASVQTRKPDASRNRSSEIYLLGKNKR 206


>gi|66047415|ref|YP_237256.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae B728a]
 gi|289676016|ref|ZP_06496906.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae FF5]
 gi|302185424|ref|ZP_07262097.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae 642]
 gi|75500697|sp|Q4ZNQ4|RLME_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|63258122|gb|AAY39218.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           syringae B728a]
 gi|330895314|gb|EGH27652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330969643|gb|EGH69709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 216

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|15892128|ref|NP_359842.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
 gi|34580841|ref|ZP_00142321.1| cell division protein ftsJ [Rickettsia sibirica 246]
 gi|81528508|sp|Q92J64|RLME_RICCN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|15619256|gb|AAL02743.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
 gi|28262226|gb|EAA25730.1| cell division protein ftsJ [Rickettsia sibirica 246]
          Length = 227

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 154/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N  N ++++ID+L++E + GV+F + DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQALDGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLVALNKK 227


>gi|152972103|ref|YP_001337249.1| 23S rRNA methyltransferase J [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896686|ref|YP_002921431.1| 23S rRNA methyltransferase J [Klebsiella pneumoniae NTUH-K2044]
 gi|262042738|ref|ZP_06015892.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|329997734|ref|ZP_08302902.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp. MS
           92-3]
 gi|189040694|sp|A6TEJ8|RLME_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150956952|gb|ABR78982.1| 23S rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238549013|dbj|BAH65364.1| 23S rRNA methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039963|gb|EEW41080.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328538923|gb|EGF64982.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp. MS
           92-3]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G   N+ R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIG---NSGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A   + ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|145298036|ref|YP_001140877.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|158514048|sp|A4SJQ7|RLME_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|142850808|gb|ABO89129.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV++AQ  G R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MTQKKRSPSSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLRTGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ A    G N    RV+A DIL M+PI GV F + DF +      +   +G   
Sbjct: 61  APGGWSQFAVEQVGDNG---RVIACDILPMDPIAGVDFLQGDFREETVLGALLDRVGPDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G +++D  R M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGTQQVDQARAMYLIELALDMCNQVLRTNGSFVVKVFQGEGFDAYLNE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++K F  V   KP +SRA S E++++A GF+
Sbjct: 178 IRKLFSAVKIRKPDSSRARSREVYIVATGFK 208


>gi|325131968|gb|EGC54667.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M6190]
 gi|325137799|gb|EGC60374.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis ES14902]
          Length = 206

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|260596194|ref|YP_003208765.1| 23S rRNA methyltransferase J [Cronobacter turicensis z3032]
 gi|189040699|sp|A7MIM8|RLME_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|260215371|emb|CBA27387.1| Ribosomal RNA large subunit methyltransferase J [Cronobacter
           turicensis z3032]
          Length = 209

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIG---GAGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|15676697|ref|NP_273841.1| cell division protein FtsJ [Neisseria meningitidis MC58]
 gi|161869743|ref|YP_001598910.1| cell division protein [Neisseria meningitidis 053442]
 gi|218767917|ref|YP_002342429.1| putative cell division protein [Neisseria meningitidis Z2491]
 gi|304387890|ref|ZP_07370064.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis ATCC 13091]
 gi|81542244|sp|Q9JQX5|RLME_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81707224|sp|Q7DDL2|RLME_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040316|sp|A9M3N1|RLME_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7226032|gb|AAF41212.1| cell division protein FtsJ [Neisseria meningitidis MC58]
 gi|121051925|emb|CAM08231.1| putative cell division protein [Neisseria meningitidis Z2491]
 gi|161595296|gb|ABX72956.1| cell division protein [Neisseria meningitidis 053442]
 gi|261392834|emb|CAX50415.1| ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
           methyltransferase; cell division protein FtsJ)
           [Neisseria meningitidis 8013]
 gi|304338155|gb|EFM04291.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis ATCC 13091]
 gi|308388985|gb|ADO31305.1| putative cell division protein [Neisseria meningitidis alpha710]
 gi|316983790|gb|EFV62771.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
           H44/76]
 gi|319410165|emb|CBY90501.1| ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
           methyltransferase; cell division protein FtsJ)
           [Neisseria meningitidis WUE 2594]
 gi|325127924|gb|EGC50827.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis N1568]
 gi|325129969|gb|EGC52768.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis OX99.30304]
 gi|325134056|gb|EGC56711.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M13399]
 gi|325135979|gb|EGC58589.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M0579]
 gi|325144164|gb|EGC66471.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M01-240013]
 gi|325198017|gb|ADY93473.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis G2136]
 gi|325200517|gb|ADY95972.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis H44/76]
 gi|325202406|gb|ADY97860.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M01-240149]
 gi|325206360|gb|ADZ01813.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M04-240196]
 gi|325207842|gb|ADZ03294.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis NZ-05/33]
          Length = 206

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|296313876|ref|ZP_06863817.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           polysaccharea ATCC 43768]
 gi|296839605|gb|EFH23543.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           polysaccharea ATCC 43768]
          Length = 206

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++ G +     V A+DIL ME + GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLAGPSGA---VFALDILPMEAVNGVSFIQGDFRENDVLAQFETLLNNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R++ LCE A  FA + L  GG FLVK FQG    + +  ++  F
Sbjct: 121 CDMAPNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMRGIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|16762059|ref|NP_457676.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143548|ref|NP_806890.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213027549|ref|ZP_03341996.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213420316|ref|ZP_03353382.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425425|ref|ZP_03358175.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213584091|ref|ZP_03365917.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646996|ref|ZP_03377049.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852787|ref|ZP_03382319.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289804406|ref|ZP_06535035.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825808|ref|ZP_06544976.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|81512806|sp|Q8Z3H3|RLME_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|25311089|pir||AH0902 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504362|emb|CAD07814.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139183|gb|AAO70750.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 208

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|67459510|ref|YP_247134.1| ribosomal RNA large subunit methyltransferase J [Rickettsia felis
           URRWXCal2]
 gi|75536083|sp|Q4UKG2|RLME_RICFE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|67005043|gb|AAY61969.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia felis
           URRWXCal2]
          Length = 227

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/222 (45%), Positives = 155/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+LEG+R+R+AYKLL+I+ K ++  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHGKFKLFN 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N+ N ++++ID+L++EPI  V+FF+ DF + ++
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNSLNNKIISIDLLEIEPIAEVEFFQKDFFEENT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQALDGKADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAENELLNKVKREFRTVKHFKPSSSRSESTEIYLVALNKK 227


>gi|15803719|ref|NP_289753.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 EDL933]
 gi|15833312|ref|NP_312085.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. Sakai]
 gi|16131069|ref|NP_417646.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|24114468|ref|NP_708978.1| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 301]
 gi|26249762|ref|NP_755802.1| 23S rRNA methyltransferase J [Escherichia coli CFT073]
 gi|30064517|ref|NP_838688.1| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 2457T]
 gi|74313716|ref|YP_312135.1| 23S rRNA methyltransferase J [Shigella sonnei Ss046]
 gi|82545583|ref|YP_409530.1| 23S rRNA methyltransferase J [Shigella boydii Sb227]
 gi|89109942|ref|AP_003722.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91212600|ref|YP_542586.1| 23S rRNA methyltransferase J [Escherichia coli UTI89]
 gi|110643419|ref|YP_671149.1| 23S rRNA methyltransferase J [Escherichia coli 536]
 gi|110807045|ref|YP_690565.1| 23S rRNA methyltransferase J [Shigella flexneri 5 str. 8401]
 gi|117625473|ref|YP_858796.1| 23S rRNA methyltransferase J [Escherichia coli APEC O1]
 gi|157148748|ref|YP_001456067.1| 23S rRNA methyltransferase J [Citrobacter koseri ATCC BAA-895]
 gi|157158192|ref|YP_001464654.1| 23S rRNA methyltransferase J [Escherichia coli E24377A]
 gi|157162662|ref|YP_001459980.1| 23S rRNA methyltransferase J [Escherichia coli HS]
 gi|168754160|ref|ZP_02779167.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4401]
 gi|168765485|ref|ZP_02790492.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4501]
 gi|168781322|ref|ZP_02806329.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786064|ref|ZP_02811071.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC869]
 gi|170018571|ref|YP_001723525.1| 23S rRNA methyltransferase J [Escherichia coli ATCC 8739]
 gi|170082714|ref|YP_001732034.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170681323|ref|YP_001745451.1| 23S rRNA methyltransferase J [Escherichia coli SMS-3-5]
 gi|187730342|ref|YP_001881906.1| 23S rRNA methyltransferase J [Shigella boydii CDC 3083-94]
 gi|188494253|ref|ZP_03001523.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           53638]
 gi|191168046|ref|ZP_03029846.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B7A]
 gi|191172201|ref|ZP_03033744.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           F11]
 gi|194430230|ref|ZP_03062728.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B171]
 gi|195938398|ref|ZP_03083780.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC4024]
 gi|208807870|ref|ZP_03250207.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812489|ref|ZP_03253818.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820270|ref|ZP_03260590.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4042]
 gi|209395973|ref|YP_002272649.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920654|ref|YP_002294738.1| 23S rRNA methyltransferase J [Escherichia coli SE11]
 gi|215488495|ref|YP_002330926.1| 23S rRNA methyltransferase J [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327701|ref|ZP_03443784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. TW14588]
 gi|218550462|ref|YP_002384253.1| 23S rRNA methyltransferase J [Escherichia fergusonii ATCC 35469]
 gi|218555749|ref|YP_002388662.1| 23S rRNA methyltransferase J [Escherichia coli IAI1]
 gi|218560249|ref|YP_002393162.1| 23S rRNA methyltransferase J [Escherichia coli S88]
 gi|218691469|ref|YP_002399681.1| 23S rRNA methyltransferase J [Escherichia coli ED1a]
 gi|218696884|ref|YP_002404551.1| 23S rRNA methyltransferase J [Escherichia coli 55989]
 gi|218701948|ref|YP_002409577.1| 23S rRNA methyltransferase J [Escherichia coli IAI39]
 gi|218706799|ref|YP_002414318.1| 23S rRNA methyltransferase J [Escherichia coli UMN026]
 gi|227887900|ref|ZP_04005705.1| 23S rRNA methyltransferase J [Escherichia coli 83972]
 gi|237706069|ref|ZP_04536550.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           3_2_53FAA]
 gi|238902281|ref|YP_002928077.1| 23S rRNA methyltransferase [Escherichia coli BW2952]
 gi|253771987|ref|YP_003034818.1| 23S rRNA methyltransferase J [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038344|ref|ZP_04872402.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           1_1_43]
 gi|254163121|ref|YP_003046229.1| 23S rRNA methyltransferase J [Escherichia coli B str. REL606]
 gi|254795128|ref|YP_003079965.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018902|ref|ZP_05432767.1| 23S rRNA methyltransferase J [Shigella sp. D9]
 gi|256024246|ref|ZP_05438111.1| 23S rRNA methyltransferase J [Escherichia sp. 4_1_40B]
 gi|260845992|ref|YP_003223770.1| 23S rRNA methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260857306|ref|YP_003231197.1| 23S rRNA methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|261228190|ref|ZP_05942471.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255046|ref|ZP_05947579.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284553|ref|YP_003501371.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406788|ref|ZP_06650714.1| rrmJ [Escherichia coli FVEC1412]
 gi|293416609|ref|ZP_06659248.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B185]
 gi|293449513|ref|ZP_06663934.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B088]
 gi|297520551|ref|ZP_06938937.1| 23S rRNA methyltransferase J [Escherichia coli OP50]
 gi|298382529|ref|ZP_06992126.1| rrmJ [Escherichia coli FVEC1302]
 gi|300817568|ref|ZP_07097784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 107-1]
 gi|300823857|ref|ZP_07103981.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 119-7]
 gi|300897944|ref|ZP_07116322.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 198-1]
 gi|300904366|ref|ZP_07122218.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 84-1]
 gi|300918937|ref|ZP_07135495.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 115-1]
 gi|300926080|ref|ZP_07141899.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 182-1]
 gi|300929871|ref|ZP_07145316.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 187-1]
 gi|300938091|ref|ZP_07152868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 21-1]
 gi|300948830|ref|ZP_07162897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 116-1]
 gi|300955765|ref|ZP_07168109.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 175-1]
 gi|300980088|ref|ZP_07174838.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 200-1]
 gi|300990826|ref|ZP_07179353.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 45-1]
 gi|301022034|ref|ZP_07185977.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 69-1]
 gi|301025976|ref|ZP_07189459.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 196-1]
 gi|301047977|ref|ZP_07195020.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 185-1]
 gi|301301763|ref|ZP_07207897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 124-1]
 gi|301326396|ref|ZP_07219752.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 78-1]
 gi|301644890|ref|ZP_07244861.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 146-1]
 gi|306816479|ref|ZP_07450611.1| 23S rRNA methyltransferase J [Escherichia coli NC101]
 gi|307139865|ref|ZP_07499221.1| 23S rRNA methyltransferase J [Escherichia coli H736]
 gi|307313116|ref|ZP_07592742.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           W]
 gi|309793756|ref|ZP_07688182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 145-7]
 gi|312968483|ref|ZP_07782692.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           2362-75]
 gi|312972547|ref|ZP_07786721.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1827-70]
 gi|331643877|ref|ZP_08345008.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H736]
 gi|331648979|ref|ZP_08350067.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M605]
 gi|331654783|ref|ZP_08355783.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M718]
 gi|331659466|ref|ZP_08360408.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA206]
 gi|331664791|ref|ZP_08365696.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA143]
 gi|331670006|ref|ZP_08370851.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA271]
 gi|331679258|ref|ZP_08379930.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H591]
 gi|331684826|ref|ZP_08385418.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H299]
 gi|332279990|ref|ZP_08392403.1| 23S rRNA methyltransferase [Shigella sp. D9]
 gi|83287968|sp|P0C0R8|RLME_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83287969|sp|P0C0R9|RLME_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83287970|sp|P0C0R7|RLME_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=Cell division protein ftsJ; AltName:
           Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83287971|sp|P0C0S0|RLME_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122422294|sp|Q1R6F9|RLME_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122957976|sp|Q0TCT1|RLME_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123342473|sp|Q0T0A5|RLME_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123558569|sp|Q31W56|RLME_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123616070|sp|Q3YX62|RLME_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459881|sp|A1AG82|RLME_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040334|sp|A7ZS75|RLME_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040685|sp|A8AQ68|RLME_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040688|sp|A8A4Z3|RLME_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040689|sp|B1IQU4|RLME_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703296|sp|B7MBU8|RLME_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703297|sp|B5YS68|RLME_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703298|sp|B7NKP6|RLME_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703299|sp|B7M085|RLME_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703300|sp|B1XGY9|RLME_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703301|sp|B7NDG3|RLME_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703302|sp|B6I1Q2|RLME_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703303|sp|B1LFS9|RLME_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703305|sp|B7LR46|RLME_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705316|sp|B2U1Z8|RLME_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809551|sp|B7UJ72|RLME_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809552|sp|B7LHP2|RLME_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809553|sp|B7N363|RLME_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|259494564|sp|C4ZSR8|RLME_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|12517791|gb|AAG58313.1|AE005546_7 cell division protein [Escherichia coli O157:H7 str. EDL933]
 gi|26110190|gb|AAN82376.1|AE016767_136 Ribosomal RNA large subunit methyltransferase J [Escherichia coli
           CFT073]
 gi|146027|gb|AAA23812.1| ftsJ [Escherichia coli str. K-12 substr. W3110]
 gi|606117|gb|AAA57980.1| ftsJ [Escherichia coli str. K-12 substr. MG1655]
 gi|746400|gb|AAA97507.1| regulatory protein [Escherichia coli]
 gi|1789569|gb|AAC76211.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13363531|dbj|BAB37481.1| cell division protein methyltransferase FtsJ [Escherichia coli
           O157:H7 str. Sakai]
 gi|24053650|gb|AAN44685.1| cell division protein [Shigella flexneri 2a str. 301]
 gi|30042776|gb|AAP18499.1| cell division protein [Shigella flexneri 2a str. 2457T]
 gi|73857193|gb|AAZ89900.1| cell division protein [Shigella sonnei Ss046]
 gi|81246994|gb|ABB67702.1| cell division protein [Shigella boydii Sb227]
 gi|85675973|dbj|BAE77223.1| 23S rRNA methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074174|gb|ABE09055.1| cell division protein [Escherichia coli UTI89]
 gi|110345011|gb|ABG71248.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           536]
 gi|110616593|gb|ABF05260.1| cell division protein [Shigella flexneri 5 str. 8401]
 gi|115514597|gb|ABJ02672.1| cell division protein [Escherichia coli APEC O1]
 gi|157068342|gb|ABV07597.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           HS]
 gi|157080222|gb|ABV19930.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E24377A]
 gi|157085953|gb|ABV15631.1| hypothetical protein CKO_04580 [Citrobacter koseri ATCC BAA-895]
 gi|169753499|gb|ACA76198.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           ATCC 8739]
 gi|169890549|gb|ACB04256.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170519041|gb|ACB17219.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           SMS-3-5]
 gi|187427334|gb|ACD06608.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
           CDC 3083-94]
 gi|188489452|gb|EDU64555.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           53638]
 gi|189001103|gb|EDU70089.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358551|gb|EDU76970.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364840|gb|EDU83256.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373884|gb|EDU92300.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC869]
 gi|190901915|gb|EDV61664.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B7A]
 gi|190907511|gb|EDV67107.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           F11]
 gi|194411731|gb|EDX28055.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B171]
 gi|208727671|gb|EDZ77272.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733766|gb|EDZ82453.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740393|gb|EDZ88075.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157373|gb|ACI34806.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. EC4115]
 gi|209758248|gb|ACI77436.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758250|gb|ACI77437.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758252|gb|ACI77438.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758254|gb|ACI77439.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209758256|gb|ACI77440.1| cell division protein methyltransferase FtsJ [Escherichia coli]
 gi|209913913|dbj|BAG78987.1| 23S rRNA methyltransferase [Escherichia coli SE11]
 gi|215266567|emb|CAS11006.1| 23S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|217320068|gb|EEC28493.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           O157:H7 str. TW14588]
 gi|218353616|emb|CAU99813.1| 23S rRNA methyltransferase [Escherichia coli 55989]
 gi|218358003|emb|CAQ90649.1| 23S rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218362517|emb|CAR00141.1| 23S rRNA methyltransferase [Escherichia coli IAI1]
 gi|218367018|emb|CAR04789.1| 23S rRNA methyltransferase [Escherichia coli S88]
 gi|218371934|emb|CAR19790.1| 23S rRNA methyltransferase [Escherichia coli IAI39]
 gi|218429033|emb|CAV17954.1| 23S rRNA methyltransferase [Escherichia coli ED1a]
 gi|218433896|emb|CAR14813.1| 23S rRNA methyltransferase [Escherichia coli UMN026]
 gi|222034896|emb|CAP77639.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           LF82]
 gi|226839968|gb|EEH71989.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           1_1_43]
 gi|226899109|gb|EEH85368.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
           3_2_53FAA]
 gi|227835296|gb|EEJ45762.1| 23S rRNA methyltransferase J [Escherichia coli 83972]
 gi|238859756|gb|ACR61754.1| 23S rRNA methyltransferase [Escherichia coli BW2952]
 gi|242378722|emb|CAQ33512.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|253323031|gb|ACT27633.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975022|gb|ACT40693.1| 23S rRNA methyltransferase [Escherichia coli B str. REL606]
 gi|253979178|gb|ACT44848.1| 23S rRNA methyltransferase [Escherichia coli BL21(DE3)]
 gi|254594528|gb|ACT73889.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755955|dbj|BAI27457.1| 23S rRNA methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257761139|dbj|BAI32636.1| 23S rRNA methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260447794|gb|ACX38216.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           DH1]
 gi|281180221|dbj|BAI56551.1| 23S rRNA methyltransferase [Escherichia coli SE15]
 gi|281602562|gb|ADA75546.1| Ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2002017]
 gi|284923202|emb|CBG36296.1| cell division protein [Escherichia coli 042]
 gi|290764426|gb|ADD58387.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322603|gb|EFE62032.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B088]
 gi|291426794|gb|EFE99826.1| rrmJ [Escherichia coli FVEC1412]
 gi|291431965|gb|EFF04948.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B185]
 gi|294490488|gb|ADE89244.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           IHE3034]
 gi|298277669|gb|EFI19185.1| rrmJ [Escherichia coli FVEC1302]
 gi|299879902|gb|EFI88113.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 196-1]
 gi|300300162|gb|EFJ56547.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 185-1]
 gi|300307862|gb|EFJ62382.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 200-1]
 gi|300317360|gb|EFJ67144.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 175-1]
 gi|300358336|gb|EFJ74206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 198-1]
 gi|300397749|gb|EFJ81287.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 69-1]
 gi|300403689|gb|EFJ87227.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 84-1]
 gi|300407046|gb|EFJ90584.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 45-1]
 gi|300413933|gb|EFJ97243.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 115-1]
 gi|300417869|gb|EFK01180.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 182-1]
 gi|300451686|gb|EFK15306.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 116-1]
 gi|300456912|gb|EFK20405.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 21-1]
 gi|300462204|gb|EFK25697.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 187-1]
 gi|300523625|gb|EFK44694.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 119-7]
 gi|300529866|gb|EFK50928.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 107-1]
 gi|300842744|gb|EFK70504.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 124-1]
 gi|300846907|gb|EFK74667.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 78-1]
 gi|301076796|gb|EFK91602.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 146-1]
 gi|305850044|gb|EFM50503.1| 23S rRNA methyltransferase J [Escherichia coli NC101]
 gi|306907027|gb|EFN37535.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           W]
 gi|307625222|gb|ADN69526.1| 23S rRNA methyltransferase J [Escherichia coli UM146]
 gi|308122713|gb|EFO59975.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 145-7]
 gi|309703605|emb|CBJ02945.1| cell division protein [Escherichia coli ETEC H10407]
 gi|310334924|gb|EFQ01129.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1827-70]
 gi|312286701|gb|EFR14612.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           2362-75]
 gi|312947736|gb|ADR28563.1| 23S rRNA methyltransferase J [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648578|gb|EFS13020.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2a str. 2457T]
 gi|315062485|gb|ADT76812.1| 23S rRNA methyltransferase [Escherichia coli W]
 gi|315137765|dbj|BAJ44924.1| ribosomal RNA large subunit methyltransferase [Escherichia coli
           DH1]
 gi|315257104|gb|EFU37072.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 85-1]
 gi|315288957|gb|EFU48355.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 110-3]
 gi|315294886|gb|EFU54225.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 153-1]
 gi|315297891|gb|EFU57161.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 16-3]
 gi|315617262|gb|EFU97871.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           3431]
 gi|320174543|gb|EFW49679.1| 23S rRNA methyltransferase J [Shigella dysenteriae CDC 74-1112]
 gi|320181454|gb|EFW56372.1| 23S rRNA methyltransferase J [Shigella boydii ATCC 9905]
 gi|320186666|gb|EFW61390.1| 23S rRNA methyltransferase J [Shigella flexneri CDC 796-83]
 gi|320189532|gb|EFW64191.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC1212]
 gi|320194664|gb|EFW69294.1| 23S rRNA methyltransferase J [Escherichia coli WV_060327]
 gi|320202093|gb|EFW76668.1| 23S rRNA methyltransferase J [Escherichia coli EC4100B]
 gi|320640250|gb|EFX09822.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. G5101]
 gi|320645547|gb|EFX14556.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. 493-89]
 gi|320650857|gb|EFX19314.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. H 2687]
 gi|320656238|gb|EFX24150.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661928|gb|EFX29336.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666763|gb|EFX33742.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. LSU-61]
 gi|323154393|gb|EFZ40594.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           EPECa14]
 gi|323162871|gb|EFZ48706.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E128010]
 gi|323165139|gb|EFZ50929.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
           53G]
 gi|323173561|gb|EFZ59190.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           LT-68]
 gi|323183133|gb|EFZ68531.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           1357]
 gi|323189200|gb|EFZ74484.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           RN587/1]
 gi|323376927|gb|ADX49195.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           KO11]
 gi|323936127|gb|EGB32421.1| ribosomal RNA large methyltransferase J [Escherichia coli E1520]
 gi|323941721|gb|EGB37900.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E482]
 gi|323946967|gb|EGB42983.1| ribosomal RNA large methyltransferase J [Escherichia coli H120]
 gi|323951302|gb|EGB47177.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H252]
 gi|323957674|gb|EGB53388.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H263]
 gi|323961166|gb|EGB56780.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H489]
 gi|323966359|gb|EGB61793.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M863]
 gi|323970258|gb|EGB65529.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA007]
 gi|323979104|gb|EGB74182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TW10509]
 gi|324008750|gb|EGB77969.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 57-2]
 gi|324012132|gb|EGB81351.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 60-1]
 gi|324018296|gb|EGB87515.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           MS 117-3]
 gi|324119544|gb|EGC13426.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           E1167]
 gi|326337879|gb|EGD61713.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1125]
 gi|326347449|gb|EGD71174.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1044]
 gi|327251270|gb|EGE62959.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           STEC_7v]
 gi|330909233|gb|EGH37747.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase E [Escherichia coli AA86]
 gi|331037348|gb|EGI09572.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H736]
 gi|331042726|gb|EGI14868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M605]
 gi|331048165|gb|EGI20242.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           M718]
 gi|331054048|gb|EGI26077.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA206]
 gi|331058039|gb|EGI30021.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA143]
 gi|331062919|gb|EGI34833.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           TA271]
 gi|331073323|gb|EGI44646.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H591]
 gi|331078441|gb|EGI49647.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           H299]
 gi|332086091|gb|EGI91253.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
           5216-82]
 gi|332086420|gb|EGI91567.1| ribosomal RNA large subunit methyltransferase J [Shigella
           dysenteriae 155-74]
 gi|332090681|gb|EGI95775.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
           3594-74]
 gi|332102342|gb|EGJ05688.1| 23S rRNA methyltransferase [Shigella sp. D9]
 gi|332345135|gb|AEE58469.1| ribosomal RNA large subunit methyltransferase RrmJ [Escherichia
           coli UMNK88]
 gi|332752338|gb|EGJ82728.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           4343-70]
 gi|332752864|gb|EGJ83249.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-671]
 gi|332754691|gb|EGJ85057.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2747-71]
 gi|332765175|gb|EGJ95402.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           2930-71]
 gi|332998821|gb|EGK18417.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           VA-6]
 gi|332999257|gb|EGK18843.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-272]
 gi|332999886|gb|EGK19469.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-218]
 gi|333014527|gb|EGK33874.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-304]
 gi|333014980|gb|EGK34324.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
           K-227]
          Length = 209

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|322831208|ref|YP_004211235.1| ribosomal RNA large subunit methyltransferase J [Rahnella sp.
           Y9602]
 gi|321166409|gb|ADW72108.1| ribosomal RNA large subunit methyltransferase J [Rahnella sp.
           Y9602]
          Length = 209

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ  A   G+     R++A+D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVATQIGNKG---RIIALDLLPMDPIVGVDFLQGDFRDELVLKALLERVGESK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|300721530|ref|YP_003710805.1| 23 S rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297628022|emb|CBJ88571.1| 23 S rRNA methyltransferase [Xenorhabdus nematophila ATCC 19061]
          Length = 209

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G   N+ RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIG---NSGRVIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDNK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLIELALDMCRDVLAPGGSFIVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F K+   KP ASRA S E++++A G +
Sbjct: 178 IRSLFAKIKIRKPEASRARSREVYIVATGRK 208


>gi|254804677|ref|YP_003082898.1| ribosomal RNA large subunit methyltransferase j [Neisseria
           meningitidis alpha14]
 gi|254668219|emb|CBA04997.1| ribosomal RNA large subunit methyltransferase j [Neisseria
           meningitidis alpha14]
 gi|254671945|emb|CBA04325.1| cell division protein FtsJ [Neisseria meningitidis alpha275]
 gi|325203884|gb|ADY99337.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           meningitidis M01-240355]
          Length = 206

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+IN+K ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TGS+     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGSSGA---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|298488448|ref|ZP_07006479.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157073|gb|EFH98162.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 216

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|293412551|ref|ZP_06655274.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B354]
 gi|291469322|gb|EFF11813.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           B354]
          Length = 209

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKTLLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|206577505|ref|YP_002236409.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae 342]
 gi|288933393|ref|YP_003437452.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           variicola At-22]
 gi|290511556|ref|ZP_06550925.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp.
           1_1_55]
 gi|226703308|sp|B5XSW2|RLME_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|206566563|gb|ACI08339.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           pneumoniae 342]
 gi|288888122|gb|ADC56440.1| ribosomal RNA large subunit methyltransferase J [Klebsiella
           variicola At-22]
 gi|289776549|gb|EFD84548.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp.
           1_1_55]
          Length = 209

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  +I +    IVDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G   N+ R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIG---NSGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A   + ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|71734802|ref|YP_276319.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257482269|ref|ZP_05636310.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289624594|ref|ZP_06457548.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646953|ref|ZP_06478296.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|83305664|sp|Q48E69|RLME_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71555355|gb|AAZ34566.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322536|gb|EFW78629.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329995|gb|EFW85982.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330868238|gb|EGH02947.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330987047|gb|EGH85150.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 216

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|330963967|gb|EGH64227.1| FtsJ cell division protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 216

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKVIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|315179213|gb|ADT86127.1| 23S rRNA methyltransferase J [Vibrio furnissii NCTC 11218]
          Length = 209

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++LQ    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLQPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA I G +    +V+A DIL M+ I GV F + DF +    + + + I  N 
Sbjct: 61  APGGWSQYAAGIVGESG---QVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPNM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E++++A G++
Sbjct: 178 VRDMFKAVKIRKPDSSRARSREVYIVATGYK 208


>gi|56415226|ref|YP_152301.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364156|ref|YP_002143793.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81361508|sp|Q5PLC1|RLME_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705312|sp|B5BGK3|RLME_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56129483|gb|AAV78989.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095633|emb|CAR61201.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 208

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDSSRARSREVYIVATGRK 208


>gi|331007339|ref|ZP_08330535.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC1989]
 gi|330418855|gb|EGG93325.1| Ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium IMCC1989]
          Length = 206

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL  H  D YVQ++Q +G+R+R+ YKLL++N+K ++++ N  ++DLGS+PG W
Sbjct: 3   RSKSSKGWLEEHFKDKYVQQSQQDGYRSRACYKLLELNKKDKLIKKNMTVIDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVL 140
           SQVAA + G N     V+A DIL M+ I GV+F + DF +   +E I  A+ G   DLV+
Sbjct: 63  SQVAAELVGDNGT---VIASDILPMDGIAGVQFVQGDFTEDSVFEEIMNAMQGFKADLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G  ++D  R M L E A   A+  L +GG F+ K FQG   + +L   +K+F
Sbjct: 120 SDMAPNMSGMAEVDQPRAMYLVELALDMAVNTLEVGGGFVAKVFQGEGFDALLAETRKNF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            +V+  KP ASRA S E++ +A GF+
Sbjct: 180 TRVVTRKPDASRARSREVYWVATGFK 205


>gi|313668721|ref|YP_004049005.1| cell division protein [Neisseria lactamica ST-640]
 gi|309379377|emb|CBX21944.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006183|emb|CBN87645.1| putative cell division protein [Neisseria lactamica 020-06]
          Length = 206

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME + GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEAVNGVSFIQGDFRENDVLAQFEGLLNNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|16766593|ref|NP_462208.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161616304|ref|YP_001590269.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552057|ref|ZP_02345810.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167995303|ref|ZP_02576393.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231905|ref|ZP_02656963.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237996|ref|ZP_02663054.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168243130|ref|ZP_02668062.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168262693|ref|ZP_02684666.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463481|ref|ZP_02697398.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819637|ref|ZP_02831637.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194443123|ref|YP_002042553.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450102|ref|YP_002047325.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471555|ref|ZP_03077539.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736185|ref|YP_002116245.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197247415|ref|YP_002148221.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265976|ref|ZP_03166050.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198244059|ref|YP_002217269.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387675|ref|ZP_03214287.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205354198|ref|YP_002227999.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858545|ref|YP_002245196.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|81521544|sp|Q8ZLS7|RLME_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040331|sp|A9N744|RLME_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705306|sp|B5F6U7|RLME_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705307|sp|B5FI23|RLME_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705308|sp|B5R0H0|RLME_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705309|sp|B5REP5|RLME_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705310|sp|B4TJ16|RLME_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705311|sp|B4T708|RLME_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705313|sp|B4TWE7|RLME_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|16421855|gb|AAL22167.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365668|gb|ABX69436.1| hypothetical protein SPAB_04112 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401786|gb|ACF62008.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194408406|gb|ACF68625.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457919|gb|EDX46758.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711687|gb|ACF90908.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633188|gb|EDX51602.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197211118|gb|ACH48515.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244231|gb|EDY26851.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289104|gb|EDY28473.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938575|gb|ACH75908.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604773|gb|EDZ03318.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205273979|emb|CAR38985.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205323210|gb|EDZ11049.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327001|gb|EDZ13765.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333841|gb|EDZ20605.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337840|gb|EDZ24604.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343455|gb|EDZ30219.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348567|gb|EDZ35198.1| ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206710348|emb|CAR34706.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261248462|emb|CBG26299.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995494|gb|ACY90379.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159846|emb|CBW19365.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914321|dbj|BAJ38295.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087741|emb|CBY97505.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225980|gb|EFX51034.1| Cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase E ; LSU rRNA Um [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615300|gb|EFY12221.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618341|gb|EFY15232.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622854|gb|EFY19698.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626824|gb|EFY23621.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631393|gb|EFY28153.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635340|gb|EFY32054.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643339|gb|EFY39903.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647089|gb|EFY43590.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648892|gb|EFY45337.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655084|gb|EFY51395.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657687|gb|EFY53955.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664183|gb|EFY60381.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667466|gb|EFY63628.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674714|gb|EFY70806.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675653|gb|EFY71726.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682289|gb|EFY78312.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684892|gb|EFY80890.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131656|gb|ADX19086.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195903|gb|EFZ81074.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199020|gb|EFZ84117.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204280|gb|EFZ89289.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207627|gb|EFZ92574.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211320|gb|EFZ96164.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214738|gb|EFZ99487.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221218|gb|EGA05644.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224041|gb|EGA08334.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230310|gb|EGA14429.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233286|gb|EGA17380.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239323|gb|EGA23373.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242426|gb|EGA26452.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246936|gb|EGA30902.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254131|gb|EGA37951.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255248|gb|EGA39025.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262711|gb|EGA46267.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264021|gb|EGA47529.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269407|gb|EGA52862.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625047|gb|EGE31392.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629319|gb|EGE35662.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990154|gb|AEF09137.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 208

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|296104890|ref|YP_003615036.1| 23S rRNA methyltransferase J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059349|gb|ADF64087.1| 23S rRNA methyltransferase J [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295097665|emb|CBK86755.1| 23S rRNA Um-2552 2'-O-methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 208

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + +   +G   
Sbjct: 61  APGGWSQYAVTQIGGTG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFEEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFAKVKVRKPDSSRARSREVYIVATGRK 208


>gi|283788183|ref|YP_003368048.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951637|emb|CBG91337.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 209

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|242240756|ref|YP_002988937.1| 23S rRNA methyltransferase J [Dickeya dadantii Ech703]
 gi|242132813|gb|ACS87115.1| ribosomal RNA large subunit methyltransferase J [Dickeya dadantii
           Ech703]
          Length = 209

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YVQ+AQ +G R+R+ +KL ++ +  ++ +    +VDLG+
Sbjct: 1   MANKKRSASSTRWLQEHFSDKYVQQAQKKGLRSRAWFKLDELQQSDKLFKLGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G N    R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVSQIGGNG---RIIACDLLPMDPIVGVDFLQGDFRDELVLKTLLERVGDEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALGMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASRA S E++++A G +
Sbjct: 178 IRTLFTTVKIRKPEASRARSREVYIVATGRK 208


>gi|121594725|ref|YP_986621.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. JS42]
 gi|120606805|gb|ABM42545.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax sp. JS42]
          Length = 237

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/229 (37%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           P    R  L+ K + +S + + + WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E+  +
Sbjct: 8   PDPGRRTDLSMKAQTKSKKVN-KAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGL 66

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDF 119
           ++    +VDLGSSPG+WSQ   R    +       N  ++A+DIL MEPI GV F + DF
Sbjct: 67  IKPGHVVVDLGSSPGAWSQYVRRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDF 126

Query: 120 LDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
            + +    +++A+   P D+V+SDMA    G   +D +R   L E A  FA+  L   G 
Sbjct: 127 REEEVLAGLQEAVQARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGA 186

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +VK F G   + ++ L K  F+ V  +KP ASR +S E FL+  G ++
Sbjct: 187 LVVKLFHGSGYSQLVQLFKDTFRVVKPMKPKASRDKSSETFLVGMGLKR 235


>gi|312963090|ref|ZP_07777575.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
           fluorescens WH6]
 gi|311282601|gb|EFQ61197.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
           fluorescens WH6]
          Length = 216

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WL  H NDPYV++AQ +G+R+R++YKLL++ +K ++ +    ++DLG++PG W
Sbjct: 3   RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQVA+R+ G      R++A DIL+M+ I  V F   DF        I +A+G    DLV+
Sbjct: 63  SQVASRLIG---GQGRLIASDILEMDSIPDVTFVHGDFTQDAVLAQILEAVGNSQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFLVK FQG   ++    ++K F
Sbjct: 120 SDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHKNIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPDSSRDRSREQYLLARGFR 205


>gi|59711085|ref|YP_203861.1| 23S rRNA methyltransferase J [Vibrio fischeri ES114]
 gi|75354549|sp|Q5E7M3|RLME_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|59479186|gb|AAW84973.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
          Length = 209

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS  WL  H +D YV  AQ  G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKNKVSASSGRWLKEHFDDKYVLEAQKRGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G   +  +V+A DIL M+ I GV F + DF +    + + + I  + 
Sbjct: 61  APGGWSQYAVEQVG---DEGQVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGNLAVDQPRAMYLVELALDMCRQVLAPNGSFTVKVFQGEGFDQYLQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E++++A G++
Sbjct: 178 VRNMFKVVKIRKPDSSRARSREVYIVATGYK 208


>gi|51594825|ref|YP_069016.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis IP 32953]
 gi|108806051|ref|YP_649967.1| 23S rRNA methyltransferase J [Yersinia pestis Antiqua]
 gi|108813407|ref|YP_649174.1| 23S rRNA methyltransferase J [Yersinia pestis Nepal516]
 gi|145600799|ref|YP_001164875.1| 23S rRNA methyltransferase J [Yersinia pestis Pestoides F]
 gi|153950455|ref|YP_001402557.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis IP 31758]
 gi|153997280|ref|ZP_02022380.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           CA88-4125]
 gi|161484877|ref|NP_668018.2| 23S rRNA methyltransferase J [Yersinia pestis KIM 10]
 gi|161511441|ref|NP_991973.2| 23S rRNA methyltransferase J [Yersinia pestis biovar Microtus str.
           91001]
 gi|170025952|ref|YP_001722457.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis YPIII]
 gi|186893834|ref|YP_001870946.1| 23S rRNA methyltransferase J [Yersinia pseudotuberculosis PB1/+]
 gi|218930517|ref|YP_002348392.1| 23S rRNA methyltransferase J [Yersinia pestis CO92]
 gi|229839155|ref|ZP_04459314.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896644|ref|ZP_04511811.1| 23S rRNA methyltransferase [Yersinia pestis Pestoides A]
 gi|229899719|ref|ZP_04514860.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903881|ref|ZP_04518994.1| 23S rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|81516686|sp|Q8ZBB5|RLME_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81640539|sp|Q66F67|RLME_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123073165|sp|Q1CEK6|RLME_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123372780|sp|Q1CC00|RLME_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158514111|sp|A4TRJ0|RLME_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040346|sp|A7FMS9|RLME_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705326|sp|B2K2P8|RLME_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705327|sp|B1JMH7|RLME_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|51588107|emb|CAH19713.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777055|gb|ABG19574.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Nepal516]
 gi|108777964|gb|ABG12022.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Antiqua]
 gi|115349128|emb|CAL22091.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           CO92]
 gi|145212495|gb|ABP41902.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           Pestoides F]
 gi|149288917|gb|EDM38997.1| ribosomal RNA large subunit methyltransferase J [Yersinia pestis
           CA88-4125]
 gi|152961950|gb|ABS49411.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752486|gb|ACA70004.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis YPIII]
 gi|186696860|gb|ACC87489.1| ribosomal RNA large subunit methyltransferase J [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679651|gb|EEO75754.1| 23S rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|229687211|gb|EEO79286.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695521|gb|EEO85568.1| 23S rRNA methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700422|gb|EEO88454.1| 23S rRNA methyltransferase [Yersinia pestis Pestoides A]
 gi|320013706|gb|ADV97277.1| 23S rRNA methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 209

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MSNKKRSASSSRWLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQSDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    GS     RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIGSKG---RVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+ DMA    G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  
Sbjct: 118 VQVVMCDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRARSREVYIVATGRK 208


>gi|161506140|ref|YP_001573252.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189040330|sp|A9MP28|RLME_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160867487|gb|ABX24110.1| hypothetical protein SARI_04328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 208

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIG---GRGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|62181805|ref|YP_218222.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224585092|ref|YP_002638891.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|75480572|sp|Q57JH1|RLME_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809558|sp|C0PZ62|RLME_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|62129438|gb|AAX67141.1| Ribosomal RNA large subunit methyltransferase J [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224469620|gb|ACN47450.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322716292|gb|EFZ07863.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 208

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL+ H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLHEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|238650351|ref|YP_002916203.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
 gi|259494570|sp|C4K0Q4|RLME_RICPU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|238624449|gb|ACR47155.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
          Length = 227

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 154/222 (69%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+++G+R+R+AYKLL+I+EK ++  
Sbjct: 6   SGYRNKFVRVKTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFI 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N  N ++++ID+L++E + GV+F + DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDVLEIEHVAGVEFVQKDFFEADT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I QA+ G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L   G F+ K F
Sbjct: 126 EELIIQALDGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG  N++L  +K+ F+ V H KP +SR+ES E++L+A   +
Sbjct: 186 RGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLVALNKK 227


>gi|77359818|ref|YP_339393.1| 23S rRNA methyltransferase J [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123587311|sp|Q3IE64|RLME_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|76874729|emb|CAI85950.1| ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) (Cell division protein ftsJ)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 209

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS+ WL  H +D YVQ AQ +GWR+R+ +KL ++  + ++L+    +VDLG+
Sbjct: 1   MTNKKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQSRDKLLRPAMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PGSWSQ  A   G   +  +V+A DIL M+ + GV F + DF +      + + I G  
Sbjct: 61  APGSWSQYLAEKVG---DKGQVIACDILPMDSLAGVDFLQGDFREEAVLSALLKRIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+  +D   +M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQFLQD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASRA S E++++A G++
Sbjct: 178 VRNSFKTVKIRKPDASRARSREVYIVATGYK 208


>gi|59800827|ref|YP_207539.1| hypothetical protein NGO0383 [Neisseria gonorrhoeae FA 1090]
 gi|240013700|ref|ZP_04720613.1| hypothetical protein NgonD_03460 [Neisseria gonorrhoeae DGI18]
 gi|240016140|ref|ZP_04722680.1| hypothetical protein NgonFA_03058 [Neisseria gonorrhoeae FA6140]
 gi|240117521|ref|ZP_04731583.1| hypothetical protein NgonPID_03526 [Neisseria gonorrhoeae PID1]
 gi|240120769|ref|ZP_04733731.1| hypothetical protein NgonPI_03133 [Neisseria gonorrhoeae PID24-1]
 gi|268603220|ref|ZP_06137387.1| cell division protein [Neisseria gonorrhoeae PID1]
 gi|293399468|ref|ZP_06643621.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae F62]
 gi|75356299|sp|Q5F9L0|RLME_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|59717722|gb|AAW89127.1| putative methyltranferase involved in cell division [Neisseria
           gonorrhoeae FA 1090]
 gi|268587351|gb|EEZ52027.1| cell division protein [Neisseria gonorrhoeae PID1]
 gi|291610037|gb|EFF39159.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           gonorrhoeae F62]
          Length = 206

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ HIND YV  AQ +G+RAR+AYKLL+INEK +I++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHINDQYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|83951908|ref|ZP_00960640.1| ribosomal RNA large subunit methyltransferase J [Roseovarius
           nubinhibens ISM]
 gi|83836914|gb|EAP76211.1| ribosomal RNA large subunit methyltransferase J [Roseovarius
           nubinhibens ISM]
          Length = 239

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 147/237 (62%), Gaps = 11/237 (4%)

Query: 1   MVKPP-----GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R LT KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 2   MAKGPDGKNTSGRGQRDLTVKVKTARGRRNSSTRWLQRQLNDPYVKRAQAEGYRGRAAFK 61

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPI 109
           ++++++K + L +  R+VDLG +PG W+QVA                R + +D+ ++EP+
Sbjct: 62  IMELDDKFRFLVNGARVVDLGCAPGGWAQVAVPRINALGEKPGKAVGRFIGVDLQEVEPL 121

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G +F   DF++  + + +++ +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A
Sbjct: 122 AGAEFHVLDFMEDGADDKVKEWLGGRADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLA 181

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ F KV +VKP ASR +S E F++A GFR
Sbjct: 182 FDVLEEGGTFVSKVLAGGAEGDLQKLLKQRFTKVANVKPPASRPDSSEKFVIATGFR 238


>gi|260771821|ref|ZP_05880739.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           metschnikovii CIP 69.14]
 gi|260613113|gb|EEX38314.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           metschnikovii CIP 69.14]
          Length = 209

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +KL +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSSRWLKEHFDDIYVHEAKKKGYRSRAIFKLKEIQSKDKLLRTGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA I G   +  +V+A DIL M+ I GV F + DF +      + + I  + 
Sbjct: 61  APGGWSQYAASIVG---DTGQVIACDILPMDSIAGVSFLQGDFREESVLAALIERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNMAGNNSVDQPRAMYLVELALDMCRQVLIPNGSFVVKVFQGEGFDHYVQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E++++A G++
Sbjct: 178 VRSMFKAVKIRKPDSSRARSREVYVVATGYK 208


>gi|149185550|ref|ZP_01863866.1| 23S rRNA methylase [Erythrobacter sp. SD-21]
 gi|148830770|gb|EDL49205.1| 23S rRNA methylase [Erythrobacter sp. SD-21]
          Length = 219

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/221 (48%), Positives = 150/221 (67%), Gaps = 5/221 (2%)

Query: 7   SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           S S +    +V+  +    SS  WL R +NDPYV++A+ +G+R+R+AYKL++++EK  +L
Sbjct: 2   SRSGKDKDTRVRTAKKRSESSTRWLQRQLNDPYVKQAKADGYRSRAAYKLIEMDEKFGLL 61

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   RIVDLG +PG WSQVA ++         VV ID+L+ EPI GV  F+ DF+D D+ 
Sbjct: 62  KGASRIVDLGITPGGWSQVARKVRPK----ATVVGIDLLETEPIEGVTIFQMDFMDDDAP 117

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + +A+GG  DLV+SDMA  T+GH++ DHLRTM L EAA +FA+E L+ GG FL K   
Sbjct: 118 RVLEEALGGKADLVMSDMAANTVGHKQTDHLRTMGLVEAAAWFAVENLDTGGTFLAKVLA 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GGT  D+L LLKKHF+ V H KP ASR  S E +++A+GF+
Sbjct: 178 GGTDKDLLDLLKKHFKTVKHAKPPASRKGSSEWYVIAQGFK 218


>gi|226941815|ref|YP_002796889.1| FtsJ [Laribacter hongkongensis HLHK9]
 gi|226716742|gb|ACO75880.1| FtsJ [Laribacter hongkongensis HLHK9]
          Length = 205

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WLN H++D +V  AQ EG+R+R+AYKLL+I++K ++L+    + DLGS+PGSW
Sbjct: 3   RSKTSAAWLNEHVHDHWVHMAQKEGYRSRAAYKLLEIHDKDKLLRPGMTVADLGSAPGSW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA I G   ++ RV A+D+L+M  I GV F + DF +    +     + G P DLV+
Sbjct: 63  SQVAAGIVG---DSGRVFALDLLEMAAIPGVDFIQGDFREDAVLDQFETLLAGRPLDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID  R   LCE A  FA   L  GG FLVK FQG   ND L  ++  F
Sbjct: 120 SDMAPNLSGMASIDQARAAYLCELALDFARSHLKPGGAFLVKVFQGSEFNDYLAAMRSGF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            +V+  KP ASR  S E++LL KG R
Sbjct: 180 TQVLSRKPKASRDRSAEIYLLGKGLR 205


>gi|237808997|ref|YP_002893437.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Tolumonas auensis DSM
           9187]
 gi|259494571|sp|C4L8Y1|RLME_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|237501258|gb|ACQ93851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Tolumonas auensis DSM
           9187]
          Length = 209

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +K+ +I +K ++++    +VDLG+
Sbjct: 1   MSKKKRTASSTRWLKEHFDDKYVQQAQKQGLRSRAVFKIDEIQQKDKLIKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G +    RV+A DIL M+PI GV F + DF +      +   +G   
Sbjct: 61  APGGWSQFCVEQVGPHG---RVIACDILPMDPIAGVDFLQGDFREEAVLSALLGRVGEQK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D++LSDMA    G   +D  R+M L E A     ++L   G F+VK FQG    + L  
Sbjct: 118 VDIILSDMAPNMSGTPAVDQPRSMYLVELALEMCKQVLAAKGSFVVKVFQGAGFEEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP +SR+ S E++++A GF+
Sbjct: 178 VRSLFSVVKIRKPDSSRSRSREVYIVATGFK 208


>gi|126664481|ref|ZP_01735465.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
 gi|126630807|gb|EBA01421.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
          Length = 206

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H+NDP+V++AQ++G+R+RS+YKLL+IN K +++Q    ++DLGS+PG W
Sbjct: 3   RSKSSNRWLEEHVNDPFVKKAQMDGYRSRSSYKLLEINAKDKLIQPTMTVMDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVL 140
           SQVA  + G      RV+A DIL M+ + GV+F + DF +   +E I   +     D+V+
Sbjct: 63  SQVATDLVGHKG---RVIASDILPMDAVAGVEFIQGDFTENAVFEEIMAVLRDAKVDVVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G    D   +M L E A   A ++L   G F+ K F GG  +  +  +++ F
Sbjct: 120 SDMAPNISGVNAADQAASMYLIELALDMASQVLKPKGSFVAKVFHGGGYDGYVKAVREQF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP +SRA S E++L+ KGFR
Sbjct: 180 DKVVVRKPDSSRARSREVYLVGKGFR 205


>gi|146313247|ref|YP_001178321.1| 23S rRNA methyltransferase J [Enterobacter sp. 638]
 gi|189040690|sp|A4WEZ0|RLME_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|145320123|gb|ABP62270.1| 23S rRNA Um-2552 2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 208

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    IVDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVTQIG---GQGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A   + ++L  GG F+VK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRSMYLVELALEMSRDVLAPGGSFVVKVFQGEGFEEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFAKVKVRKPDSSRARSREVYIVATGRK 208


>gi|296112663|ref|YP_003626601.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           RH4]
 gi|295920357|gb|ADG60708.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           RH4]
 gi|326560921|gb|EGE11286.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           7169]
 gi|326563843|gb|EGE14094.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           46P47B1]
 gi|326566515|gb|EGE16661.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           12P80B1]
 gi|326566854|gb|EGE16993.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           103P14B1]
 gi|326569819|gb|EGE19869.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           BC8]
 gi|326571269|gb|EGE21291.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           BC1]
 gi|326571575|gb|EGE21590.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           BC7]
 gi|326575145|gb|EGE25073.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           CO72]
 gi|326576769|gb|EGE26676.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           101P30B1]
 gi|326577555|gb|EGE27432.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
           O35E]
          Length = 210

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/211 (44%), Positives = 134/211 (63%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++KN+    SSR W+  HI+D YVQ+AQ EG+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRIKNKKLSKSSRAWMKEHIDDFYVQKAQKEGYRARAAYKLLEINEKTGLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA ++ G   +   ++A DIL M+ +  V F + DF +   +  I   +
Sbjct: 61  DLGSAPGSWSQVAGQLVG---DAGTLIASDILPMDTLENVIFIQGDFREEAVFNQIMNEV 117

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           GG   D+VLSDMA  T G   +D  R M LCE A  FAL++L +GG  ++K FQG  + +
Sbjct: 118 GGRAVDVVLSDMAPNTSGMAAVDQPRMMYLCELAVDFALKVLPVGGALIMKVFQGEGSQE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   ++K F K+  +KP ASR  S EMF +A
Sbjct: 178 LRAQMQKQFSKIKSIKPAASRPRSKEMFWVA 208


>gi|300718585|ref|YP_003743388.1| ribosomal RNA large subunit methyltransferase [Erwinia billingiae
           Eb661]
 gi|299064421|emb|CAX61541.1| Ribosomal RNA large subunit methyltransferase [Erwinia billingiae
           Eb661]
          Length = 209

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 114/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKLGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      GS     RV+  DIL M+PI GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGSKG---RVIGCDILPMDPIAGVDFLQGDFRDELVMKALLERVGDNK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG FLVK FQG    D L  
Sbjct: 118 VQVVMSDMAPNMTGTPAVDIPRAMYLVELALEMCRDVLAPGGSFLVKVFQGDGFEDYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPDASRSRSREVYIVATGRK 208


>gi|289207887|ref|YP_003459953.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           K90mix]
 gi|288943518|gb|ADC71217.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           K90mix]
          Length = 208

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 125/207 (60%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ WL  H +DPYVQRAQ EG+R R+ YKL +I+E+ ++L+   R+VDLG++PG 
Sbjct: 3   KRSRSSQRWLKEHFDDPYVQRAQQEGYRGRAVYKLQEIDERDRLLKPGMRVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLV 139
           W+Q AA+  G       +VA DIL M+P+ G      DF +    + I +A+ G   DLV
Sbjct: 63  WTQYAAQKIGRKGG---LVASDILPMDPVPGATIITGDFREDAVLQAILEALDGQRADLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R++ LCE A   A ++LN  G  LVK FQG  ++  L  +++ 
Sbjct: 120 LSDMAPNLTGTDAIDQPRSIHLCELALELACDVLNPRGAMLVKLFQGEGSDAYLAEVRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+KV   KP ASR  S E+++LA+G R
Sbjct: 180 FEKVQVRKPQASRPRSREVYVLARGPR 206


>gi|261250304|ref|ZP_05942880.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio orientalis CIP 102891]
 gi|260939420|gb|EEX95406.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio orientalis CIP 102891]
          Length = 209

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G      +++A D+L M+PI GV F + DF D    E + + I  + 
Sbjct: 61  APGGWSQYAAKIIGEEG---QIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLKRIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 IRDMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|240112494|ref|ZP_04726984.1| putative cell division protein [Neisseria gonorrhoeae MS11]
 gi|268598561|ref|ZP_06132728.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
 gi|268582692|gb|EEZ47368.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
          Length = 206

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ HIND YV  AQ +G+RAR+ YKLL+INEK +I++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHINDHYVHMAQKDGYRARATYKLLEINEKDKIIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P DLV+
Sbjct: 64  SQVAAKLTGTSGT---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+   D  R+  LCE A  FA + L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL K  R
Sbjct: 181 GTVQTRKPEASRNRSSEIYLLGKNKR 206


>gi|254510861|ref|ZP_05122928.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
           bacterium KLH11]
 gi|221534572|gb|EEE37560.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
           bacterium KLH11]
          Length = 238

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 145/237 (61%), Gaps = 11/237 (4%)

Query: 1   MVKPPGS-----SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P         +R L  KVK  R  + SS  WL R +NDPYV+RAQ EG+R R+A+K
Sbjct: 1   MAKTPSGKNSSGRGQRDLKVKVKTARGRKLSSTRWLERQLNDPYVKRAQAEGYRGRAAFK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPI 109
           +L+++EK + L    R+VDLG +PG W QVA +        S      V+ +D+ ++EP+
Sbjct: 61  ILELDEKFRFLVPGARVVDLGCAPGGWLQVAVKRVNALGEKSGKRIGTVLGVDLQEVEPV 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G      DF++ D+ + ++  +GG  D+V+SDMA  + GH++ DHLR M+LCE A +FA
Sbjct: 121 AGATAHVLDFMEDDADQKVKDWLGGKADVVMSDMAAASSGHKQTDHLRIMALCETAAYFA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L  GG F+ K   GG   D+  LLK+ FQKV +VKP ASR+ S E F++A GFR
Sbjct: 181 FDVLEEGGTFVAKVLAGGAEGDLQKLLKQKFQKVANVKPPASRSNSSEKFVVATGFR 237


>gi|260913935|ref|ZP_05920409.1| ribosomal RNA large subunit methyltransferase J [Pasteurella
           dagmatis ATCC 43325]
 gi|260632022|gb|EEX50199.1| ribosomal RNA large subunit methyltransferase J [Pasteurella
           dagmatis ATCC 43325]
          Length = 209

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G   +  RV+A DIL+M+PI+GV F + DF D +    + + +G G 
Sbjct: 61  APGGWSQYVVSQIG---DKGRVIACDILEMDPIVGVDFLQGDFRDENVLATLLERVGEGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLATKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRDRSREVYIVATGYK 208


>gi|254453503|ref|ZP_05066940.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 238]
 gi|198267909|gb|EDY92179.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 238]
          Length = 244

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 102/240 (42%), Positives = 146/240 (60%), Gaps = 14/240 (5%)

Query: 1   MVKPPG--------SSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARS 51
           MVK P             R LT KVK  R  + SS  WL R +NDPYV RA+ +G+R R+
Sbjct: 1   MVKKPTSRIGKNTSGRGNRDLTVKVKTARGRRMSSTLWLQRQLNDPYVVRAKADGYRGRA 60

Query: 52  AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDM 106
           AYK+L++NEK       +R+VDLG++PG W Q+A     +           ++ ID+ +M
Sbjct: 61  AYKILELNEKFDFFTPGKRVVDLGAAPGGWIQIAVPKVNALGERKGKPIGTILGIDLQEM 120

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
           EPI G +    DF++ D+ + +++ +GG  D+VLSDMA    GH++ DH R M+LCEAA 
Sbjct: 121 EPIAGSELHVLDFMEDDADQKVKEWLGGKADIVLSDMAASASGHKQTDHNRIMALCEAAA 180

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +FA ++L  GG F+ K   GG   D+  LLK +F+KV +VKP ASR++S E F++A GFR
Sbjct: 181 YFAFDVLEEGGVFVAKVLAGGAEADLQRLLKVNFKKVQYVKPPASRSDSSEKFVVATGFR 240


>gi|149915184|ref|ZP_01903712.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. AzwK-3b]
 gi|149810905|gb|EDM70744.1| ribosomal RNA large subunit methyltransferase, putative
           [Roseobacter sp. AzwK-3b]
          Length = 238

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 146/237 (61%), Gaps = 11/237 (4%)

Query: 1   MVKPPGSSSR-----RGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYK 54
           M K P   +      R LT KVK  R  + SS  WL R +NDPYVQRAQ EG+R R+AYK
Sbjct: 1   MAKGPDGKNTSGRGLRDLTVKVKTARGRKASSTRWLQRQLNDPYVQRAQAEGYRGRAAYK 60

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPI 109
           ++++++K + L    R+VDLG +PG W QVA          S      ++ ID+ ++EPI
Sbjct: 61  IMELDDKFRFLVPGARVVDLGCAPGGWCQVAVPRINALGDKSGKAQGFILGIDLQEVEPI 120

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            G    + DF+  D+   +++ +GG  D+V+SDMA  + GH++ DHLR ++LCEAA + A
Sbjct: 121 AGCVLKQLDFMADDADVLVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCEAAAYLA 180

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++L+ GG F+ K   GG   ++  LLK+ F KV +VKP ASRA+S E F++A GF+
Sbjct: 181 FDVLDEGGTFVSKVLAGGAEGELQKLLKQRFTKVANVKPPASRADSSEKFVVATGFK 237


>gi|323136970|ref|ZP_08072050.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocystis sp. ATCC
           49242]
 gi|322397731|gb|EFY00253.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocystis sp. ATCC
           49242]
          Length = 242

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 106/225 (47%), Positives = 147/225 (65%), Gaps = 1/225 (0%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K  G    R L  +VK  R    SS  WL R +NDPYV RA+ EG+R+R+AYKL++++++
Sbjct: 6   KISGREGGRSLKTRVKTARKRSLSSTLWLERQLNDPYVARAKREGYRSRAAYKLIEMDDR 65

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
           + + +   RIVDLG++PG WSQVAA    +     +VV +D+LDMEPI GV F   DF D
Sbjct: 66  YHLFKPGGRIVDLGAAPGGWSQVAADRVKAKDGRGKVVGVDLLDMEPITGVTFAVKDFND 125

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+ +F++  +GG  D V+SDMA    GH++ DHLR ++L E A  FA+++L  GG F+ 
Sbjct: 126 DDAPDFVKAMLGGEADGVMSDMAANATGHKQTDHLRIVALAELAAEFAMDVLAAGGFFVA 185

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  QGGT   +L  LK+ F  V HVKP ASRA+S E+++LA GFR
Sbjct: 186 KVLQGGTEGQLLTRLKRDFATVRHVKPAASRADSAELYVLATGFR 230


>gi|330875231|gb|EGH09380.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 216

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
               S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKKSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|319763183|ref|YP_004127120.1| ribosomal RNA methyltransferase rrmj/ftsj [Alicycliphilus
           denitrificans BC]
 gi|330825246|ref|YP_004388549.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
           denitrificans K601]
 gi|317117744|gb|ADV00233.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
           denitrificans BC]
 gi|329310618|gb|AEB85033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
           denitrificans K601]
          Length = 220

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 7/217 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK +S + + + WLN H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KVKTKSKKVN-KAWLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQFGLIKPGHVVVDLG 60

Query: 76  SSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           SSPG+WSQ   R            +  ++++DIL MEPI GV F + DF D +    ++Q
Sbjct: 61  SSPGAWSQYVRRRLSPGGAAMGQLDGTIISLDILPMEPIEGVTFLQGDFRDEEVLARLQQ 120

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G P D+V+SDMA    G   +D +R   L E A  FA+  L   G  +VK F G   
Sbjct: 121 AVQGRPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPDGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++ L K  F+ V  VKP ASR +S E FL+  G +
Sbjct: 181 TQLVQLFKDTFRVVKPVKPKASRDKSSETFLVGIGLK 217


>gi|323497766|ref|ZP_08102780.1| 23S rRNA methyltransferase J [Vibrio sinaloensis DSM 21326]
 gi|323317113|gb|EGA70110.1| 23S rRNA methyltransferase J [Vibrio sinaloensis DSM 21326]
          Length = 209

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G +    +++A D+L M+PI GV F + DF +    E + + I  + 
Sbjct: 61  APGGWSQYAAKIIGEDG---QIIACDLLPMDPIAGVSFLQGDFREDAVLEALLERIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 IRDTFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|258623149|ref|ZP_05718160.1| cell division protein FtsJ [Vibrio mimicus VM573]
 gi|258625327|ref|ZP_05720227.1| cell division protein FtsJ [Vibrio mimicus VM603]
 gi|258582393|gb|EEW07242.1| cell division protein FtsJ [Vibrio mimicus VM603]
 gi|258584569|gb|EEW09307.1| cell division protein FtsJ [Vibrio mimicus VM573]
          Length = 264

 Score =  255 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 4/212 (1%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K+  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG
Sbjct: 55  KMSKQKHSASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLG 114

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I   
Sbjct: 115 AAPGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPE 171

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D + 
Sbjct: 172 MVDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVK 231

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 232 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 263


>gi|261342622|ref|ZP_05970480.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315270|gb|EFC54208.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
           cancerogenus ATCC 35316]
          Length = 208

 Score =  255 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + +   +G   
Sbjct: 61  APGGWSQYAVTQIG---GTGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A   + ++L  GG F+VK FQG    + L  
Sbjct: 118 VQVVMSDMAPNMCGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFEEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFAKVKVRKPDSSRARSREVYIVATGRK 208


>gi|260575119|ref|ZP_05843120.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sp. SW2]
 gi|259022741|gb|EEW26036.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sp. SW2]
          Length = 246

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/231 (40%), Positives = 142/231 (61%), Gaps = 6/231 (2%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
            K      +R L  +VK+ +  + SS  WL R +NDPYV RA+ EG+R R+A+K+L++++
Sbjct: 7   TKGTSGRGQRELRVRVKSAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAFKILELDD 66

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILGVKFF 115
           K+  L+   R+VDLG +PG W QVA     +     N     V+ +D+ ++EPI G +  
Sbjct: 67  KYGFLKPGARVVDLGCAPGGWCQVAVGRVNALAERKNKPVGTVLGVDLQEVEPIAGAQIH 126

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + DFL  D+   ++  +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  
Sbjct: 127 QLDFLADDADALVKGWLGGPADVVMSDMAAAASGHKGTDHLRIIALCEAAAQFAFDVLEE 186

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG F+ K   GG    +  +LK++F KV +VKP ASRA+S E F++A G+R
Sbjct: 187 GGTFVAKVLAGGAEIGLQTMLKQNFDKVANVKPPASRADSSEKFVVAMGYR 237


>gi|88860503|ref|ZP_01135141.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           tunicata D2]
 gi|88817701|gb|EAR27518.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
           tunicata D2]
          Length = 209

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS+ WL  H +D YV  AQ  G R+R+ +KL ++  K ++++    +VDLG+
Sbjct: 1   MTKKKHSASSKRWLMEHFDDHYVLEAQKRGLRSRAMFKLEELQTKDKLIKDGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PGSWSQ  A +TG      +V+A DIL M+P+ GV+F + DF +      + + I G  
Sbjct: 61  APGSWSQYVAELTG---FKGKVIACDILPMDPLAGVEFLQGDFREESVLNALLERIDGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    GH  +D   +M L E A     ++L   G F VK FQG      +  
Sbjct: 118 VDVVLSDMAPNMSGHLSVDQAGSMYLVELALDMCHQVLKKNGSFAVKVFQGEGFEQYVQD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP +SRA S E++L+A G++
Sbjct: 178 VRSCFTTVKIRKPDSSRARSREVYLVATGYK 208


>gi|330888666|gb|EGH21327.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 216

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGCDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|253997068|ref|YP_003049132.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
           JLW8]
 gi|253983747|gb|ACT48605.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
           JLW8]
          Length = 206

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           +S+ W+  H+NDPYV+ AQ +G+RAR+AYKL++I++K +I++    +VDLGS+PGSWSQV
Sbjct: 6   TSKAWMQEHLNDPYVKLAQKDGYRARAAYKLMEIDDKDKIIKPGMTVVDLGSAPGSWSQV 65

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
             +         +V+A+DIL+M PI GV F + DF +    + + Q +     DLV++DM
Sbjct: 66  TVQRLK---GQGKVIALDILEMTPISGVTFIQGDFREDAVLKLLEQTLNNLQVDLVIADM 122

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G + +D      L E A  F+ + L   G+FLVK F G    +IL  +++ F KV
Sbjct: 123 APNISGVKDVDQAGAAYLTELALEFSKDWLKPNGNFLVKVFIGAGFEEILQSMRQMFTKV 182

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
           +  KP ASR  S E++LL  G ++
Sbjct: 183 VTRKPKASRDRSSEVYLLGIGRKE 206


>gi|28899238|ref|NP_798843.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879068|ref|ZP_05891423.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AN-5034]
 gi|260896885|ref|ZP_05905381.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus Peru-466]
 gi|81727000|sp|Q87LZ4|RLME_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|28807462|dbj|BAC60727.1| cell division protein FtsJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086279|gb|EFO35974.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus Peru-466]
 gi|308089606|gb|EFO39301.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AN-5034]
          Length = 209

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I    
Sbjct: 61  APGGWSQYAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRIQPLM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|77463326|ref|YP_352830.1| 23S rRNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|123592015|sp|Q3J2Q5|RLME_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77387744|gb|ABA78929.1| 23S rRNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 244

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 142/231 (61%), Gaps = 6/231 (2%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
            K      +R L  +VK  +  + SS  WL R +NDPYV RA+ EG+R R+AYK+L++++
Sbjct: 3   TKNTSGRGQRELRVRVKTAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDD 62

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPILGVKFF 115
           K   L+   R+VDLG +PG W QVA           N     V+ +D+ ++EPI G +  
Sbjct: 63  KFGFLKPGGRVVDLGCAPGGWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEIH 122

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + DFL  D+ E ++  +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  
Sbjct: 123 QLDFLSDDADEKVKGWLGGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEE 182

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG F+ K   GG  N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 183 GGTFVAKVLAGGAENELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 233


>gi|330830896|ref|YP_004393848.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
           B565]
 gi|328806032|gb|AEB51231.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
           B565]
          Length = 209

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV++AQ  G R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MTQKKRSPSSTRWLKEHFDDQYVKKAQKMGLRSRAVFKIDEIQGKDRLLKHGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ A    G   ++ RV+A DIL M+PI GV F + DF +      + + +G   
Sbjct: 61  APGGWSQFAVEQVG---DSGRVIACDILPMDPIAGVDFLQGDFREETVLGALLERVGPDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G +++D  R M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGTQQVDQARAMYLVELALDMCNQVLRSDGSFVVKVFQGEGFDAYLNE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++K F  V   KP +SRA S E++++A GF+
Sbjct: 178 IRKLFSAVKIRKPDSSRARSREVYIVATGFK 208


>gi|312884009|ref|ZP_07743726.1| 23S rRNA methyltransferase J [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368467|gb|EFP96002.1| 23S rRNA methyltransferase J [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 209

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+ N  +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQNKDKLLKPNMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G      +++A D+L M+PI GV F + DF D    + + + I    
Sbjct: 61  APGGWSQFAAKIVGEKG---QIIACDLLPMDPISGVSFLQGDFRDEAVLDALLERISPEM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   ++ +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDNFVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRELFKVVKVRKPDSSRARSREVFIVATGYK 208


>gi|254508251|ref|ZP_05120375.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus 16]
 gi|219548868|gb|EED25869.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus 16]
          Length = 209

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I  + 
Sbjct: 61  APGGWSQYAAKIIG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|117618251|ref|YP_857802.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|143459211|sp|A0KNF1|RLME_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|117559658|gb|ABK36606.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 209

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV++AQ  G R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MTQKKHSPSSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ A    G   +  RV+A DIL M+ I GV F + DF +      + + +G   
Sbjct: 61  APGGWSQFAIDQVG---DKGRVIACDILPMDSIAGVDFLQGDFREETVLGALLERVGPDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G +++D  R+M L E A     ++L   G F+VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGTQQVDQARSMYLVELALDMCNQVLRANGSFVVKVFQGEGFDIYLNE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++K F  V   KP +SRA S E++++A GF+
Sbjct: 178 IRKLFTAVKIRKPDSSRARSREVYIVATGFK 208


>gi|77456998|ref|YP_346503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas fluorescens
           Pf0-1]
 gi|123606009|sp|Q3KI92|RLME_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77381001|gb|ABA72514.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 209

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WL RH+NDPYV++AQ +G+R+R++YKLL+I EK+++++    +VDLG++PG W
Sbjct: 3   RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +      I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G  ++D  + M LCE A   A  +L  GG+F++K FQG   +  L   +K F
Sbjct: 120 SDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDTYLKDARKKF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            K+  +KP +SR  S E ++LA G+R
Sbjct: 180 DKIQMIKPDSSRGSSREQYMLAWGYR 205


>gi|91775135|ref|YP_544891.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacillus
           flagellatus KT]
 gi|123380563|sp|Q1H387|RLME_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91709122|gb|ABE49050.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methylobacillus
           flagellatus KT]
          Length = 207

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 132/207 (63%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + +S+ WL  H+ND +V+RAQ +G+RAR+AYKLL+I++K Q+++    IVDLGS+PGS
Sbjct: 2   KRRPTSKAWLQEHVNDEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVA +     A   RV+A+DIL+M PI GV+F + DF + +    + +++ G P DLV
Sbjct: 62  WSQVAVQRL---AGQGRVIALDILEMPPIPGVEFIQGDFREEEILLVLEKSLNGKPVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           ++DMA    G   +D  R   L E A  F+ E L  GG+FLVK F G   ++I+  ++  
Sbjct: 119 IADMAPNISGISDVDQARAAYLVELALEFSREWLKPGGNFLVKVFVGSGFDEIVMAMRDS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+KV+  KP ASR  S E++LL    R
Sbjct: 179 FEKVVTRKPKASRDRSSEVYLLGLKRR 205


>gi|146283283|ref|YP_001173436.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
 gi|145571488|gb|ABP80594.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
          Length = 211

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 128/207 (61%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SSR WL+ H+NDP+V+RAQ +G R+RS+YKL+++NEK ++++    ++DLGS+PG 
Sbjct: 7   KRSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGG 66

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVA  I G      RV+A DIL M  +  V F + DF +   ++ I   + G  PDL+
Sbjct: 67  WSQVAGGIVGEKG---RVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDMLDGRQPDLI 123

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SD+A    G    D   +M L E       ++L  GG+++VK FQG  +++ L  ++  
Sbjct: 124 VSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLKDVRSS 183

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+KV+  KP ASR  S E++L+AKGF+
Sbjct: 184 FEKVVIRKPEASRPRSREVYLVAKGFK 210


>gi|209694183|ref|YP_002262111.1| 23S rRNA methyltransferase J [Aliivibrio salmonicida LFI1238]
 gi|226703281|sp|B6END5|RLME_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|208008134|emb|CAQ78276.1| ribosomal RNA large subunit methyltransferase J (cell division
           protein FtsJ) [Aliivibrio salmonicida LFI1238]
          Length = 209

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS  WL  H +D YV  AQ  G+R+R+ +KL +I  K ++L+    +VDLG+
Sbjct: 1   MSKNKLSASSGRWLKEHFDDKYVLEAQKRGYRSRAIFKLEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G   ++ +V+A DIL M+ I GV F + DF +    + + + I  + 
Sbjct: 61  APGGWSQYAVEQVG---DSGQVIACDILAMDSIAGVSFLQGDFREEAVLDALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R+M L E A     ++L   G F VK FQG + +  L  
Sbjct: 118 VDVVMSDMAPNMSGNPSVDQPRSMYLVELALDMCRQVLAPNGSFTVKVFQGESFDAYLQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++K F+ V   KP +SRA S E++++A G++
Sbjct: 178 VRKVFKVVKIRKPDSSRARSREVYIVATGYK 208


>gi|328474227|gb|EGF45032.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus 10329]
          Length = 209

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I  + 
Sbjct: 61  APGGWSQYAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|156975670|ref|YP_001446577.1| 23S rRNA methyltransferase J [Vibrio harveyi ATCC BAA-1116]
 gi|269961973|ref|ZP_06176328.1| cell division protein FtsJ [Vibrio harveyi 1DA3]
 gi|189040345|sp|A7MZH4|RLME_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|156527264|gb|ABU72350.1| hypothetical protein VIBHAR_03405 [Vibrio harveyi ATCC BAA-1116]
 gi|269833296|gb|EEZ87400.1| cell division protein FtsJ [Vibrio harveyi 1DA3]
          Length = 209

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+S   +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G      +++A D+L M+PI GV F + DF D    + + + I  + 
Sbjct: 61  APGGWSQYAAKIIGEEG---QIIACDLLPMDPIAGVSFLQGDFRDEAVLDALLERIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKVVKIRKPDSSRARSREVFVVATGYK 208


>gi|126462182|ref|YP_001043296.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558204|ref|ZP_08412526.1| ribosomal RNA large subunit methyltransferase E [Rhodobacter
           sphaeroides WS8N]
 gi|158513438|sp|A3PJK8|RLME_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|126103846|gb|ABN76524.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332275916|gb|EGJ21231.1| ribosomal RNA large subunit methyltransferase E [Rhodobacter
           sphaeroides WS8N]
          Length = 244

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 143/231 (61%), Gaps = 6/231 (2%)

Query: 2   VKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
            K      +R L  +VK  +  + SS  WL R +NDPYV RA+ EG+R R+AYK+L++++
Sbjct: 3   TKNTSGRGQRELRVRVKTAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDD 62

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILGVKFF 115
           K   L+   R+VDLG +PG W QVA     +     N     V+ +D+ ++EPI G +  
Sbjct: 63  KFGFLKPGGRVVDLGCAPGGWCQVAVERVNALGQRKNKPEGTVLGVDLQEVEPISGAEIH 122

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + DFL  D+ E ++  +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  
Sbjct: 123 QLDFLSDDADEKVKGWLGGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEE 182

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           GG F+ K   GG  N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 183 GGTFVAKVLAGGAENELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 233


>gi|254230590|ref|ZP_04923953.1| ribosomal RNA large subunit methyltransferase J [Vibrio sp. Ex25]
 gi|262393375|ref|YP_003285229.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio sp. Ex25]
 gi|269968318|ref|ZP_06182340.1| cell division protein FtsJ [Vibrio alginolyticus 40B]
 gi|151936891|gb|EDN55786.1| ribosomal RNA large subunit methyltransferase J [Vibrio sp. Ex25]
 gi|262336969|gb|ACY50764.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase E [Vibrio sp. Ex25]
 gi|269827069|gb|EEZ81381.1| cell division protein FtsJ [Vibrio alginolyticus 40B]
          Length = 209

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G   ++ +++A D+L M+PI GV F + DF D    E + + I  + 
Sbjct: 61  APGGWSQYAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLERIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKAVKIRKPDSSRARSREVFVVATGYK 208


>gi|260771180|ref|ZP_05880107.1| ribosomal RNA large subunit methyltransferase J [Vibrio furnissii
           CIP 102972]
 gi|260613777|gb|EEX38969.1| ribosomal RNA large subunit methyltransferase J [Vibrio furnissii
           CIP 102972]
          Length = 209

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++LQ +  +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLQPSMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA I G +    +V+A DIL M+ I GV F + DF +    + + + I  N 
Sbjct: 61  APGGWSQYAAGIVGESG---QVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPNM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E++++A G++
Sbjct: 178 VRDMFKAVKIRKPDSSRARSREVYIVATGYK 208


>gi|152979125|ref|YP_001344754.1| 23S rRNA methyltransferase J [Actinobacillus succinogenes 130Z]
 gi|226703280|sp|A6VPC2|RLME_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150840848|gb|ABR74819.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           succinogenes 130Z]
          Length = 208

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WSQ A    GS     R++A DIL+M+PI+GV F + DF D +    + + +G    D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILEMDPIVGVDFLQGDFRDENVLAALLERVGESKVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLTANGSFVVKVFQGEGFDEYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP ASR  S E++++A G++
Sbjct: 179 SLFKVVKVRKPEASRGRSREVYIVAIGYK 207


>gi|197334812|ref|YP_002155234.1| ribosomal RNA large subunit methyltransferase J [Vibrio fischeri
           MJ11]
 gi|226705320|sp|B5FA72|RLME_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|197316302|gb|ACH65749.1| ribosomal RNA large subunit methyltransferase J [Vibrio fischeri
           MJ11]
          Length = 209

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS  WL  H +D YV  AQ  G+R+R+ +K+ +I  K ++L+S   +VDLG+
Sbjct: 1   MSKNKVSASSGRWLKEHFDDKYVLEAQKRGYRSRAIFKIEEIQNKDKLLKSGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G   +  +V+A DIL M+ I GV F + DF +    + + + I  + 
Sbjct: 61  APGGWSQYAVEQVG---DEGQVIACDILPMDSIAGVSFLQGDFREEAVLDALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVMSDMAPNMSGNLAVDQPRAMYLVELALDMCRQVLAPNGSFTVKVFQGEGFDQYLQE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E++++A G++
Sbjct: 178 VRNMFKVVKIRKPDSSRARSREVYIVATGYK 208


>gi|238910090|ref|ZP_04653927.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 208

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ ++   +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|308448693|ref|XP_003087724.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
 gi|308253263|gb|EFO97215.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
          Length = 207

 Score =  254 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 132/210 (62%), Gaps = 4/210 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  H++DP+V++AQ EG+RAR+AYKLL+I EKH++++    +V
Sbjct: 1   MATRITNQKLSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKHKMIKPGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PGSWSQ+A ++ G   +   V+A DIL+M+ +  V F + DF + + +E +   +
Sbjct: 61  DLGAAPGSWSQIAGKLVG---DKGLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNIL 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+V+SDMA  T G+R +D  R + LCE A  FA ++L   G FLVK FQG   ++
Sbjct: 118 NGRTVDVVISDMAPNTSGNRAVDQPRQIYLCELALDFANKVLGPKGQFLVKVFQGTGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                   F  +   KP ASRA S E+FL+
Sbjct: 178 FRKHFVDIFDVLKTAKPAASRARSKEVFLI 207


>gi|330981082|gb|EGH79185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 204

 Score =  254 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 4/205 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              ++ +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG W
Sbjct: 3   RSKTNHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            KV   KP +SR  S E +LLA+GF
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGF 204


>gi|254516625|ref|ZP_05128684.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR5-3]
 gi|219675048|gb|EED31415.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR5-3]
          Length = 212

 Score =  254 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 4/205 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + SS+ WL  H  DPYVQ+AQ +G+R+R+ YKLL++ E+ ++++    I+DLGS+PG 
Sbjct: 3   KKRSSSKAWLREHREDPYVQQAQRDGYRSRACYKLLELQERERLIRPGMTILDLGSAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVAA + G   ++ +V+A DIL M+ I GV F + DF +   +E I   + G P DLV
Sbjct: 63  WSQVAAALVG---DHGQVIASDILPMDSIAGVDFVEGDFTENAVFERILTTLNGKPADLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  +++ L E A   A  +L  GG F+ K FQG   +++    ++ 
Sbjct: 120 ISDMAPNMSGVSAVDQPKSIYLVELALDMACRVLAPGGVFVTKVFQGEGFDELFKATREQ 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKG 224
           F KV+  KP ASR  S E++L+A+G
Sbjct: 180 FDKVLTRKPTASRPRSREVYLVARG 204


>gi|251792627|ref|YP_003007353.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534020|gb|ACS97266.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           aphrophilus NJ8700]
          Length = 209

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G N    RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGRNG---RVIACDILEMDPIVGVDFLQGDFRDENVLNTLLERVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRDRSREVYIVASGYK 208


>gi|82778493|ref|YP_404842.1| 23S rRNA methyltransferase J [Shigella dysenteriae Sd197]
 gi|309785507|ref|ZP_07680138.1| ribosomal RNA large subunit methyltransferase J [Shigella
           dysenteriae 1617]
 gi|123561519|sp|Q32BF4|RLME_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81242641|gb|ABB63351.1| cell division protein [Shigella dysenteriae Sd197]
 gi|308926627|gb|EFP72103.1| ribosomal RNA large subunit methyltransferase J [Shigella
           dysenteriae 1617]
          Length = 209

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R M L E A     ++L +GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLALGGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP +SRA S E++++A G +
Sbjct: 178 IRSLFTKVKVRKPDSSRARSREVYIVATGRK 208


>gi|304310499|ref|YP_003810097.1| Cell division protein FtsJ [gamma proteobacterium HdN1]
 gi|301796232|emb|CBL44440.1| Cell division protein FtsJ [gamma proteobacterium HdN1]
          Length = 206

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS  WL  H +DPYV++AQ +G+R+R+AYKLL+I EK +IL+    ++DLG++PG 
Sbjct: 2   SRSKSSSRWLREHFDDPYVKKAQQDGYRSRAAYKLLEIQEKDRILKQGMTVLDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVAAR  G   +   V+A D L+M+P+ GV F + DF + + +  + Q  G    DLV
Sbjct: 62  WSQVAARYVG---DAGHVIASDRLEMDPLYGVDFLQGDFCEEEVFAKLLQMTGNRGIDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G+R +D  R M L E A   A  +L  GG  LVK FQG   + +   +  H
Sbjct: 119 ISDMAPNMSGNRAVDQPRAMYLVELALDMATRVLKPGGSLLVKVFQGEGFDSLRKDMHTH 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+++   KP ASR+ S E + LAK +
Sbjct: 179 FRQLQTRKPDASRSRSAETYWLAKDY 204


>gi|158514184|sp|A4VNP3|RLME_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|327481681|gb|AEA84991.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 4166]
          Length = 206

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 128/207 (61%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SSR WL+ H+NDP+V+RAQ +G R+RS+YKL+++NEK ++++    ++DLGS+PG 
Sbjct: 2   KRSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVA  I G      RV+A DIL M  +  V F + DF +   ++ I   + G  PDL+
Sbjct: 62  WSQVAGGIVGEKG---RVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDMLDGRQPDLI 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SD+A    G    D   +M L E       ++L  GG+++VK FQG  +++ L  ++  
Sbjct: 119 VSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLKDVRSS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+KV+  KP ASR  S E++L+AKGF+
Sbjct: 179 FEKVVIRKPEASRPRSREVYLVAKGFK 205


>gi|254292202|ref|ZP_04962970.1| cell division protein FtsJ [Vibrio cholerae AM-19226]
 gi|150421883|gb|EDN13862.1| cell division protein FtsJ [Vibrio cholerae AM-19226]
          Length = 209

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  + 
Sbjct: 61  APGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 178 VRNLFKVVKIRKPDSSRSRSREVFIVATGYK 208


>gi|119386697|ref|YP_917752.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paracoccus denitrificans
           PD1222]
 gi|143460965|sp|A1B962|RLME_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119377292|gb|ABL72056.1| 23S rRNA Um-2552 2'-O-methyltransferase [Paracoccus denitrificans
           PD1222]
          Length = 256

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 148/236 (62%), Gaps = 12/236 (5%)

Query: 3   KPPGSS------SRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKL 55
           K PGS        +R L  +VK+ +  + SS  WL R +NDPYV RA+ EG+R R+AYK+
Sbjct: 5   KKPGSGRKSSGRGQRDLRVRVKSAKGRKLSSTLWLERQLNDPYVARAKREGYRGRAAYKI 64

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPIL 110
           L++++K++ L    R+VDLG +PG W QVA          S     RV+ +D+ +++PI 
Sbjct: 65  LELDDKYRFLVPGARVVDLGCAPGGWCQVAVARVNALGDKSGKKVGRVLGVDLQEVDPIP 124

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           G +  + DFL   + E ++  +GG  D+V+SDMA  + GH+  DHLR ++L EAA   A 
Sbjct: 125 GAEIHQLDFLSEGADEQVKAWLGGRADVVMSDMAAASSGHKGTDHLRIVALVEAAAQLAF 184

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++L  GG F+ K   GG  N++  +LK++F+KV +VKP ASR++S E F++A+GFR
Sbjct: 185 DVLEPGGTFVAKVLAGGAENEMQAMLKRNFRKVANVKPPASRSDSSEKFVVAQGFR 240


>gi|290473440|ref|YP_003466307.1| 23 S rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172740|emb|CBJ79511.1| 23 S rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 209

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G R+R+ +KL  I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDGIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           SPG WSQ      G   +  RV+A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  SPGGWSQYVVNQIG---DRGRVIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDNK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLIELALGMCRDVLAPGGSFIVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 IRSLFTKVKIRKPEASRARSREVYIVATGRK 208


>gi|240949042|ref|ZP_04753394.1| 23S rRNA methyltransferase J [Actinobacillus minor NM305]
 gi|307261051|ref|ZP_07542733.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|240296555|gb|EER47178.1| 23S rRNA methyltransferase J [Actinobacillus minor NM305]
 gi|306869353|gb|EFN01148.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 208

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|94499454|ref|ZP_01305991.1| 23S rRNA methylase [Oceanobacter sp. RED65]
 gi|94428208|gb|EAT13181.1| 23S rRNA methylase [Oceanobacter sp. RED65]
          Length = 206

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WLN H+ND YV+RAQ +G+R+R++YKLL++ EK ++++     +DLGS+PG W
Sbjct: 3   RSKSSKQWLNEHVNDVYVKRAQNDGYRSRASYKLLELIEKDKLVRPGMVTMDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQV A I G   +  RV+A DIL M+ + GV F + DF + + ++ I   +   P DLV+
Sbjct: 63  SQVLAPIVG---DKGRVIASDILPMDAMAGVDFIQGDFTEDEVFDEIMAKLDNAPVDLVV 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G    D   +M L E A   A ++L   G F+ K FQG    + L  ++  F
Sbjct: 120 SDMAPNISGVNAADQASSMYLVELALDMARQVLKQNGSFVAKVFQGAGYEEYLKDVRSSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP ASR  S E++++AKGF+
Sbjct: 180 NKVLIRKPDASRPRSREVYVVAKGFK 205


>gi|223041504|ref|ZP_03611707.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           minor 202]
 gi|223017762|gb|EEF16169.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           minor 202]
          Length = 208

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGTPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|114771066|ref|ZP_01448506.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HTCC2255]
 gi|114548348|gb|EAU51234.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HTCC2255]
          Length = 236

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/235 (40%), Positives = 150/235 (63%), Gaps = 9/235 (3%)

Query: 1   MVKPPGSSSRRGLT---QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           MV+   ++S RG+     +VK+ +  + SS  WL R +NDPYV RA  EG+R R+A+K++
Sbjct: 1   MVEKKKNTSGRGMRDLQVRVKSAKGRKLSSTLWLKRQLNDPYVARATKEGYRGRAAFKIM 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILG 111
           ++++K + L    RIVDLG +PG W QVA +   +N +        ++ ID+ +++PI G
Sbjct: 61  ELDDKFRFLVPGARIVDLGCAPGGWCQVAVKRVNANGDKQGKKIGTILGIDLQEVDPIEG 120

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +    DF++ D+   +++ +GGN D+V+SDMA    GH++ DH+R M+LCE A +FA +
Sbjct: 121 CEIHVLDFMEDDADNKVKKWLGGNADVVMSDMAASASGHKQTDHIRIMALCETAAYFAFD 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F+ K   GG   ++  LLK+ F KV H+KP +SRA+S E F++A GFR
Sbjct: 181 VLEEGGTFVAKVLAGGAEGELQKLLKEKFTKVYHMKPPSSRADSSEKFVVATGFR 235


>gi|15640656|ref|NP_230285.1| 23S rRNA methyltransferase J [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121730106|ref|ZP_01682507.1| cell division protein FtsJ [Vibrio cholerae V52]
 gi|147673945|ref|YP_001216130.1| 23S rRNA methyltransferase J [Vibrio cholerae O395]
 gi|153820567|ref|ZP_01973234.1| cell division protein FtsJ [Vibrio cholerae NCTC 8457]
 gi|153830952|ref|ZP_01983619.1| cell division protein FtsJ [Vibrio cholerae 623-39]
 gi|227080817|ref|YP_002809368.1| cell division protein FtsJ [Vibrio cholerae M66-2]
 gi|254850870|ref|ZP_05240220.1| cell division protein FtsJ [Vibrio cholerae MO10]
 gi|255744147|ref|ZP_05418100.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholera CIRS 101]
 gi|262155721|ref|ZP_06028845.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae INDRE 91/1]
 gi|262189675|ref|ZP_06048049.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae CT 5369-93]
 gi|297580762|ref|ZP_06942688.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           RC385]
 gi|298500752|ref|ZP_07010555.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MAK 757]
 gi|81545365|sp|Q9KU87|RLME_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040344|sp|A5F937|RLME_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809561|sp|C3LSP1|RLME_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|9655071|gb|AAF93802.1| cell division protein FtsJ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121628141|gb|EAX60673.1| cell division protein FtsJ [Vibrio cholerae V52]
 gi|126508889|gb|EAZ71483.1| cell division protein FtsJ [Vibrio cholerae NCTC 8457]
 gi|146315828|gb|ABQ20367.1| cell division protein FtsJ [Vibrio cholerae O395]
 gi|148873565|gb|EDL71700.1| cell division protein FtsJ [Vibrio cholerae 623-39]
 gi|227008705|gb|ACP04917.1| cell division protein FtsJ [Vibrio cholerae M66-2]
 gi|227012461|gb|ACP08671.1| cell division protein FtsJ [Vibrio cholerae O395]
 gi|254846575|gb|EET24989.1| cell division protein FtsJ [Vibrio cholerae MO10]
 gi|255738087|gb|EET93479.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholera CIRS 101]
 gi|262030432|gb|EEY49072.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae INDRE 91/1]
 gi|262034441|gb|EEY52807.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio cholerae CT 5369-93]
 gi|297535178|gb|EFH74013.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           RC385]
 gi|297540533|gb|EFH76591.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MAK 757]
          Length = 209

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  + 
Sbjct: 61  APGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 178 VRDLFKVVKIRKPDSSRSRSREVFIVATGYK 208


>gi|88797615|ref|ZP_01113204.1| cell division protein FtsJ [Reinekea sp. MED297]
 gi|88779787|gb|EAR10973.1| cell division protein FtsJ [Reinekea sp. MED297]
          Length = 206

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+DWL  H +DP+V +A+ +G+R+R++YKLL++ EK ++++    +VDLGS+PG W
Sbjct: 3   RPKNSKDWLKEHFDDPFVHKAKQDGYRSRASYKLLELCEKDRLIRPGMMVVDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQVAAR+ G   +  RVVA DIL+M+ +  V+F + DF D   ++ +   IG  P DLV+
Sbjct: 63  SQVAARMVG---DQGRVVASDILEMDAVPDVEFIQGDFTDEAVYQALLDCIGDRPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G+  ID    M L E A   A  +L  GG F+ K F G   ++ +  +++ +
Sbjct: 120 SDMAPNMSGNAVIDQPAAMYLVELALDMAQSILRPGGAFVAKLFHGAGFDEYVKTVRQQY 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP ASRA S E +++A GF+
Sbjct: 180 TKVVMRKPEASRARSRETYIVATGFK 205


>gi|170717397|ref|YP_001784501.1| 23S rRNA methyltransferase J [Haemophilus somnus 2336]
 gi|168825526|gb|ACA30897.1| ribosomal RNA large subunit methyltransferase J [Haemophilus somnus
           2336]
          Length = 209

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 4/210 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFKHGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A R  G   +  RV+A DIL+M+PI+GV F + DF D +  + + + +G   
Sbjct: 61  APGGWSQYAVRQIG---DLGRVIACDILEMDPIVGVDFLQGDFRDENVLQALLERVGEKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  
Sbjct: 118 VDVVMSDMAPNFSGMPAVDIPRAMYLVELALDMCKQVLATNGCFVVKVFQGEGFDDYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           ++  F  V   KP ASR  S E++++A G+
Sbjct: 178 IRSLFNTVKVRKPEASRGRSREVYIVAMGY 207


>gi|46143709|ref|ZP_00134554.2| COG0293: 23S rRNA methylase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208076|ref|YP_001053301.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae L20]
 gi|165976009|ref|YP_001651602.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149909|ref|YP_001968434.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307245455|ref|ZP_07527543.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247568|ref|ZP_07529612.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251350|ref|ZP_07533266.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254409|ref|ZP_07536247.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256619|ref|ZP_07538399.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258868|ref|ZP_07540600.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263233|ref|ZP_07544853.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|158513505|sp|A3MZW0|RLME_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703278|sp|B3H123|RLME_ACTP7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703279|sp|B0BUF3|RLME_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|126096868|gb|ABN73696.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876110|gb|ABY69158.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189915040|gb|ACE61292.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306853796|gb|EFM86013.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855933|gb|EFM88092.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306856591|gb|EFM88731.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306862708|gb|EFM94664.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864867|gb|EFM96770.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867219|gb|EFM99075.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306871450|gb|EFN03174.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 208

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|114798748|ref|YP_760506.1| putative ribosomal RNA large subunit methyltransferase J
           [Hyphomonas neptunium ATCC 15444]
 gi|123028016|sp|Q0C187|RLME_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114738922|gb|ABI77047.1| putative ribosomal RNA large subunit methyltransferase J
           [Hyphomonas neptunium ATCC 15444]
          Length = 234

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/230 (45%), Positives = 149/230 (64%), Gaps = 10/230 (4%)

Query: 3   KPPGS----SSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           K PG     S RR   +KV  R+ +  SS+ W+ R + DPYV++A+ EG+R+R+AYKLL+
Sbjct: 10  KGPGPERQDSGRRSTERKVIARNARTESSKRWIERQLQDPYVRKAKDEGYRSRAAYKLLE 69

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+   +IL+   R+VDLG +PG W QV+ +   +      VV ID+L ++PI G    + 
Sbjct: 70  IDAAAKILRKGMRVVDLGCAPGGWIQVSLQQGAAE-----VVGIDLLPLDPIEGATIIEG 124

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D  + D    +   + G PDL+LSDMA  T GH++ DHLRT++L E A  FA+E L+ GG
Sbjct: 125 DVNNPDDVARMMAGLSGTPDLILSDMAANTTGHKQTDHLRTVALVEMAVAFAIEHLDDGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F  K FQGG T D+L LLK+HF+ V H+KP ASRA S E++++AKGFR+
Sbjct: 185 AFCAKVFQGGATKDVLNLLKQHFRTVKHIKPAASRAGSPEIYVVAKGFRR 234


>gi|332977760|gb|EGK14520.1| ribosomal RNA large subunit methyltransferase J [Psychrobacter sp.
           1501(2011)]
          Length = 210

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/212 (41%), Positives = 129/212 (60%), Gaps = 4/212 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N++   SS+ W+  H++D YVQ AQ EG+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRITNKTLSKSSKAWMKEHLDDHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA R+ G       ++A DIL M+ +  V F + DF + + ++ +   +
Sbjct: 61  DLGSAPGSWSQVAGRLVGDEGI---LIASDILPMDALENVTFIQGDFREEEVFDKLMGEV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T GH  +D  R + LCE A  FAL +L  GG  ++K FQG     
Sbjct: 118 GDRQVDVVLSDMAPNTSGHTAVDQPRMIYLCELAVDFALRVLPKGGSLVMKMFQGEGEQQ 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           +   L+  F KV  +KP ASR  S E+F +A 
Sbjct: 178 LRQQLQSQFSKVRTIKPAASRPRSKEVFWVAT 209


>gi|90412478|ref|ZP_01220481.1| 23S rRNA methylase [Photobacterium profundum 3TCK]
 gi|90326515|gb|EAS42921.1| 23S rRNA methylase [Photobacterium profundum 3TCK]
          Length = 209

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS  WL  H +D YVQ AQ  G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSRNKQSASSGRWLKEHFDDKYVQEAQKRGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA + G   +  +V+A DIL M+ + GV F + DF +      + + I  N 
Sbjct: 61  APGGWSQYAAEVVG---DEGQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPNM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLAPNGSFAVKVFQGEGFDQYLAE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR  S E++++A G++
Sbjct: 178 IRNMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|315634356|ref|ZP_07889643.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           segnis ATCC 33393]
 gi|315476946|gb|EFU67691.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           segnis ATCC 33393]
          Length = 209

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSTRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G N    RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGRNG---RVIACDILEMDPIVGVDFLQGDFRDENVLSTLLERVGEEK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRDRSREVYIVASGYK 208


>gi|113460867|ref|YP_718934.1| 23S rRNA methyltransferase J [Haemophilus somnus 129PT]
 gi|122945233|sp|Q0I2R1|RLME_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|112822910|gb|ABI24999.1| 23S rRNA Um-2552 2'-O-methyltransferase [Haemophilus somnus 129PT]
          Length = 209

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 4/210 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFKHGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A R  G   +  RV+A DIL+M+PI+GV F + DF D +  + + + +G   
Sbjct: 61  APGGWSQYAIRQIG---DLGRVIACDILEMDPIVGVDFLQGDFRDENVLQALLERVGEKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  
Sbjct: 118 VDVVMSDMAPNFSGMPAVDIPRAMYLVELALDMCKQVLATNGCFVVKVFQGEGFDDYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           ++  F  V   KP ASR  S E++++A G+
Sbjct: 178 IRSLFNTVKVRKPEASRGRSREVYIVAMGY 207


>gi|326317394|ref|YP_004235066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374230|gb|ADX46499.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 218

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E   +++  + +VDLGS+P
Sbjct: 4   NTKSKKVNKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAP 63

Query: 79  GSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQ   R            N  ++A+DIL MEPI GV F + DF + D    +++ + 
Sbjct: 64  GAWSQYLRRRMAPAGAATGQLNGTLIALDILPMEPIEGVTFLQGDFREEDVLARLQETVQ 123

Query: 134 GNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G P D+V+SDMA    G   +D +R   L E A  FA + L   G  +VK F G     +
Sbjct: 124 GRPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAQQHLKPDGALVVKLFHGSGYTQL 183

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + L K++F+ V  +KP ASR +S E FL+  G RK
Sbjct: 184 VQLFKENFRTVKPMKPKASRDKSSETFLVGMGLRK 218


>gi|152995050|ref|YP_001339885.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
 gi|150835974|gb|ABR69950.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
          Length = 196

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 126/198 (63%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H +DPYV+++Q +G+R+R++YKL++IN+K ++ +   R+VDLG++PG WSQVAA++ 
Sbjct: 1   MKEHFDDPYVKKSQQDGYRSRASYKLIEINDKDKLFKPAMRVVDLGAAPGGWSQVAAKLV 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
           G +     +VA DIL+M P+ GV F + DF + + +E I   IG    DLV+SDMA    
Sbjct: 61  GDHGT---IVASDILEMAPLPGVSFVQGDFTEQEVYEAILAEIGDKKADLVISDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   D  + M L E A   A ++L  GG+FLVK FQG    + L  ++  F  V+  KP
Sbjct: 118 GNSSSDQPQAMYLVELALDMAAQVLRPGGNFLVKVFQGEGFEEYLKTMRAQFDSVVTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            ASRA S E++LL + ++
Sbjct: 178 DASRARSREVYLLGRQYK 195


>gi|330721347|gb|EGG99422.1| Cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [gamma proteobacterium IMCC2047]
          Length = 207

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL+ H ND YV+++Q +G+R+R++YKLL++ +K ++ +    ++DLGS+PG W
Sbjct: 3   RSKSSGRWLDEHFNDQYVKKSQQDGYRSRASYKLLELQDKDKLFKPGMSVLDLGSAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVL 140
           SQVA  + G   +  RVVA DIL MEPI G  F + DF +++ ++ I   +G    DLV+
Sbjct: 63  SQVAVELVG---DKGRVVASDILPMEPIAGADFVEGDFTEMEVYDQILNVLGEDKVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  + M L E A   A ++L  GG  + K F G   +++L   +  F
Sbjct: 120 SDMAPNMSGVSAVDQPKAMYLVELAVDMADQILKPGGALIAKVFHGDGFDELLKTTRSKF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           +KV   KP ASRA S E +L+AK F+
Sbjct: 180 KKVQIRKPDASRARSKEQYLVAKDFK 205


>gi|86148134|ref|ZP_01066433.1| cell division protein FtsJ [Vibrio sp. MED222]
 gi|218710452|ref|YP_002418073.1| 23S rRNA methyltransferase J [Vibrio splendidus LGP32]
 gi|254809562|sp|B7VJI4|RLME_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|85834051|gb|EAQ52210.1| cell division protein FtsJ [Vibrio sp. MED222]
 gi|218323471|emb|CAV19648.1| 23S rRNA methylase [Vibrio splendidus LGP32]
          Length = 209

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L     IVDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLTPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G N    +++A D+L M+PI GV F + DF +    + + + I  N 
Sbjct: 61  APGGWSQYAAKIIGDNG---QIIACDLLPMDPIAGVSFLQGDFREEAVLDALLERIQPNM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATNGSFVVKVFQGEGFDQYVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VREMFKTVKVRKPDSSRARSREVFIVATGYK 208


>gi|294669674|ref|ZP_06734741.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308587|gb|EFE49830.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 248

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WLN H+ND YV +AQ +G+RAR+AYKLL+INEK +++Q    + DLGS+PGSW
Sbjct: 46  RSKSSKAWLNEHVNDHYVHQAQKDGYRARAAYKLLEINEKDRLIQPGTVLADLGSAPGSW 105

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVL 140
           SQVAA + G       V A+DIL MEPI GV F + DF + +        +G    DLV+
Sbjct: 106 SQVAAELAGEKGA---VFALDILPMEPIAGVSFIQGDFREDEVLAQFESLLGDRLLDLVI 162

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    GH   D  +++ LC+ A  FA   L   G FLVK FQG    + L  ++  F
Sbjct: 163 CDMAPNMSGHAVTDQAKSLYLCKLALDFARNHLKTNGHFLVKVFQGAGYTEFLAEMRAAF 222

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++LL +  R
Sbjct: 223 SSVQTRKPGASRNRSSEIYLLGRNKR 248


>gi|220934156|ref|YP_002513055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254809560|sp|B8GNX9|RLME_THISH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|219995466|gb|ACL72068.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 207

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 123/206 (59%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H +D YV+RAQ EG+R+R+ YKL +I E+ ++L+    +VDLG++PG W
Sbjct: 3   RSKSSHRWLKEHFDDEYVKRAQQEGYRSRAVYKLQEIQERDRLLRQGMTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVL 140
           +Q AA + G +    RVVA DIL M+P+ GV   + DF + +  E +   +G G  DLV+
Sbjct: 63  TQYAAGLVGKHG---RVVASDILPMDPLPGVTIVEGDFREAEVLERLLAVLGEGGADLVM 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M L E A   A  +L  GGDFLVK FQG   ++ + +L+  +
Sbjct: 120 SDMAPNMSGMDAVDQPRAMYLAELAAELARTVLKPGGDFLVKLFQGAEFDEYVRMLRTEY 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP ASR  S E++ +A+G +
Sbjct: 180 DKVSIRKPKASRPRSREVYAVARGRK 205


>gi|126726913|ref|ZP_01742752.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2150]
 gi|126703871|gb|EBA02965.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
           bacterium HTCC2150]
          Length = 235

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/234 (44%), Positives = 150/234 (64%), Gaps = 8/234 (3%)

Query: 1   MVKPPGSSSRRG---LTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLL 56
           M K   ++S RG   L  KVK+ R  + SS  WL R +NDPYV+RAQ +G+R R+AYK+L
Sbjct: 1   MAKKTKNTSGRGERDLKIKVKSARGRKLSSTLWLQRQLNDPYVRRAQDDGYRGRAAYKIL 60

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS----NANNTRVVAIDILDMEPILGV 112
           ++NEK   L +  R+VDLG +PG W QVA     S    +    ++V +D+  ME I G 
Sbjct: 61  ELNEKFNFLTAGARVVDLGCAPGGWCQVAVPRVNSLGTKSGKVGKIVGVDLQVMESISGC 120

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
             ++ DF+D  + + +++ +GG  D+V+SDMA  + GH++ DHL+ M+LCEAA +FA ++
Sbjct: 121 DLYQLDFMDEGADDKVKEWLGGKADVVMSDMAASSSGHKQTDHLKIMALCEAAAYFAFDV 180

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L  GG F+ KT  GG   D+  LLK+ F KV +VKP ASRA S E F++A GFR
Sbjct: 181 LEDGGTFIAKTLAGGAEGDLQKLLKQKFTKVANVKPPASRANSSEKFVVATGFR 234


>gi|254281755|ref|ZP_04956723.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR51-B]
 gi|219677958|gb|EED34307.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium NOR51-B]
          Length = 206

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + SSR WL  H  DPYVQRAQ EG+R+R+ YKLL++NE+ ++++    ++DLG++PG 
Sbjct: 3   KKKSSSRAWLKEHREDPYVQRAQKEGYRSRACYKLLELNERDRLIRPGMTVLDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLV 139
           WSQVAA + G+     RVVA DIL M+ + GV F + DF +   ++ +        P LV
Sbjct: 63  WSQVAANLVGAKG---RVVASDILPMDSLAGVTFLQGDFTEEAIYQKLLAEFELAPPQLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R M+L E A   A+ +L  GG F+ K F G     +L   +  
Sbjct: 120 MSDMAPNLSGMTAVDQPRAMALVELALDLAVTLLPPGGAFVAKVFHGEGFEPLLKACRGQ 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F +V+  KP ASR  S E++L+A G R
Sbjct: 180 FDRVLTRKPTASRPRSREVYLVATGKR 206


>gi|148979038|ref|ZP_01815283.1| 23S rRNA methyltransferase J [Vibrionales bacterium SWAT-3]
 gi|145962011|gb|EDK27299.1| 23S rRNA methyltransferase J [Vibrionales bacterium SWAT-3]
          Length = 209

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L     +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLSPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G N    +++A D+L M+PI GV F + DF +    E + + I  N 
Sbjct: 61  APGGWSQYAAKIVGDNG---QIIACDLLPMDPIAGVSFLQGDFREDAVLEALLERIQPNM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATDGSFVVKVFQGEGFDQYVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VREMFKTVKVRKPDSSRARSREVFIVATGYK 208


>gi|261868123|ref|YP_003256045.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413455|gb|ACX82826.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 209

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSTRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G N    R++A D+L+M+PI+GV F + DF D +    + + +G G 
Sbjct: 61  APGGWSQYVVSQIGRNG---RIIACDLLEMDPIVGVDFLQGDFSDENVLNILLERVGEGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQILANKGSFVVKVFQGEGFDEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRDRSREVYIVASGYK 208


>gi|257454690|ref|ZP_05619946.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
           aerosaccus SK60]
 gi|257448000|gb|EEV22987.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
           aerosaccus SK60]
          Length = 210

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/212 (40%), Positives = 132/212 (62%), Gaps = 4/212 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SSR W+  HI+D YV+ AQ +G+RAR+AYKLL+INEK Q+++    +V
Sbjct: 1   MATRITNKKLSKSSRAWMKEHIDDHYVKLAQRDGYRARAAYKLLEINEKLQLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA ++ G   +  +++A DIL M+ +  V F + DF +   ++ I   +
Sbjct: 61  DLGSAPGSWSQVAGKLVG---DTGKLIASDILPMDTLENVTFIQGDFREQAVFDNIMAEV 117

Query: 133 -GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                ++VLSDMA  T G   +D  R + LCE A  FA ++L  GG  ++K FQG  ++ 
Sbjct: 118 ADKKVEVVLSDMAPNTSGFSAVDQPRMIYLCELAMDFAEQVLPEGGTLVIKVFQGEGSDA 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           +   +++ F KV  +KP ASRA S EM+ +A 
Sbjct: 178 LRKNMQQRFSKVRSIKPAASRARSKEMYWIAT 209


>gi|84387293|ref|ZP_00990314.1| cell division protein FtsJ [Vibrio splendidus 12B01]
 gi|84377940|gb|EAP94802.1| cell division protein FtsJ [Vibrio splendidus 12B01]
          Length = 209

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+  G+R+R+ +K+ +I  K ++L     IVDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKRGYRSRAYFKMEEIQTKDKLLTPGMTIVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G N    +++A D+L M+PI GV F + DF +    + + + I  N 
Sbjct: 61  APGGWSQYAAKIIGDNG---QIIACDLLPMDPIAGVSFLQGDFREEAVLDALLERIQPNM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATNGSFVVKVFQGEGFDQYVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VREMFKTVKVRKPDSSRARSREVFIVATGYK 208


>gi|238021385|ref|ZP_04601811.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
 gi|237868365|gb|EEP69371.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
          Length = 206

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/204 (43%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL+ H+NDPYV+RAQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSPAWLHEHVNDPYVKRAQKDGYRARAAYKLLEINEKDKLIKQGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQ+AA++ G      +V A+DIL M+ + GV F + DF +        + +     DLV+
Sbjct: 64  SQIAAKLVGKTG---KVFALDILPMDALDGVDFIQGDFREEAVLAEFERLLDNRALDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            DMA    G+  ID  R+  LCE A  FA   L  GG FLVK FQG    + +  +++ F
Sbjct: 121 CDMAPNMSGNDTIDQARSFYLCELALDFARGHLKTGGAFLVKVFQGSGYQEYMAAMREVF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKG 224
             V   KP ASR  S E++LL K 
Sbjct: 181 GTVQTRKPDASRNRSSEIYLLGKN 204


>gi|293390043|ref|ZP_06634377.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950577|gb|EFE00696.1| ribosomal RNA large subunit methyltransferase J [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 209

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSTRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G N    R++A D+L+M+PI+GV F + DF D +    + + +G G 
Sbjct: 61  APGGWSQYVVSQIGRNG---RIIACDLLEMDPIVGVDFLQGDFRDENVLNILLERVGEGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQILANKGSFVVKVFQGEGFDEYLKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSIVKVRKPEASRDRSREVYIVASGYK 208


>gi|109897891|ref|YP_661146.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoalteromonas
           atlantica T6c]
 gi|123171407|sp|Q15VJ6|RLME_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|109700172|gb|ABG40092.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 209

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS+ WL  H +D YV +A+ +G R+R+ +KL +I  K  +++    +VDLG+
Sbjct: 1   MGKNKQSESSKRWLKEHFDDKYVIKAKKQGLRSRAVFKLEEIQAKDGLIKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A +  G N +   V+A DIL M+P+ GV F   DF +    + +   IGG  
Sbjct: 61  APGGWSQYAVKQVGDNGH---VIACDILSMDPLPGVDFLMGDFREEAVLDALLNKIGGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+   D  ++M L E +     ++L   G + VK F G   +     
Sbjct: 118 VDVVMSDMAPNMTGNDTADQAKSMYLVELSLDMCRQVLKKNGSYTVKVFMGEGFDQFFNE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K  F+ V   KP +SRA S E++L+A GF+
Sbjct: 178 VKNAFKVVKTRKPDSSRARSREVYLVATGFK 208


>gi|52425018|ref|YP_088155.1| 23S rRNA methyltransferase J [Mannheimia succiniciproducens
           MBEL55E]
 gi|81387204|sp|Q65TZ0|RLME_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|52307070|gb|AAU37570.1| FtsJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 208

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ      G   +  R++A DILDM+PI+GV F + DF D +    +   +G +  D
Sbjct: 62  GGWSQYVVTQIG---DKGRIIACDILDMDPIVGVDFLQGDFRDENVLAALLDRVGEDQVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLAKKGSFVVKVFQGEGFDEYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G+R
Sbjct: 179 SLFTTVKVRKPEASRDRSREVYIVATGYR 207


>gi|323492035|ref|ZP_08097200.1| 23S rRNA methyltransferase J [Vibrio brasiliensis LMG 20546]
 gi|323313764|gb|EGA66863.1| 23S rRNA methyltransferase J [Vibrio brasiliensis LMG 20546]
          Length = 209

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G      +++A D+L M+PI GV F + DF +    E +   I  + 
Sbjct: 61  APGGWSQYAAKIVGEEG---QIIACDLLPMDPIAGVSFLQGDFREEAVLEALLDRIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDTFKAVKIRKPDSSRARSREVFVVATGYK 208


>gi|322514378|ref|ZP_08067426.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           ureae ATCC 25976]
 gi|322119729|gb|EFX91773.1| ribosomal RNA large subunit methyltransferase J [Actinobacillus
           ureae ATCC 25976]
          Length = 208

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMIVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFSTVKVRKPEASRDRSREVYIVATGYK 207


>gi|256823582|ref|YP_003147545.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Kangiella koreensis DSM
           16069]
 gi|256797121|gb|ACV27777.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Kangiella koreensis DSM
           16069]
          Length = 206

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 123/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS  W+  H +DPYV+++Q +G+R+R+ YKL ++++K+++L     +VDLG++PG 
Sbjct: 2   SRSKSSHRWMREHFDDPYVKKSQKDGYRSRAVYKLEELDQKYKLLGKGVTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLV 139
           WSQ  A   GS     ++ A+DIL+M+P+  V F + DF +      +   IG    DLV
Sbjct: 62  WSQYVAYKMGSQG---KIFALDILEMDPLPDVDFIQGDFREEAVLNQLLDKIGKHKADLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M LCE A   A  +L  GG+++VK FQG   +D +   ++ 
Sbjct: 119 LSDMAPNMSGVDAVDQPRGMYLCELALELAQTVLAKGGNYVVKVFQGEGFDDYIRQCREV 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV+  KP ASR  S E++++  G++
Sbjct: 179 FDKVLIRKPDASRGRSREVYVVGIGYK 205


>gi|219870745|ref|YP_002475120.1| 23S rRNA methyltransferase J [Haemophilus parasuis SH0165]
 gi|254809554|sp|B8F4C0|RLME_HAEPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|219690949|gb|ACL32172.1| 23S rRNA methyltransferase J [Haemophilus parasuis SH0165]
          Length = 208

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKHGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPD 137
           G WSQ      G   +  RV+A DILDM PI+GV F + DF +      + + +G G  D
Sbjct: 62  GGWSQYVVTQIG---DKGRVIACDILDMNPIVGVDFLQGDFCEESVLNALLERVGEGKVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMSSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 SLFNVVKVRKPEASRDRSREVYIVATGYK 207


>gi|163802296|ref|ZP_02196190.1| cell division protein FtsJ [Vibrio sp. AND4]
 gi|159173825|gb|EDP58639.1| cell division protein FtsJ [Vibrio sp. AND4]
          Length = 209

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+S   +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G +    +++A D+L M+PI GV F + DF D    + + + I  + 
Sbjct: 61  APGGWSQYAAKIIGEDG---QIIACDLLPMDPIAGVSFLQGDFRDEAVLDALLERIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQFVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDTFRVVKIRKPDSSRARSREVFVVASGYK 208


>gi|307252148|ref|ZP_07534047.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860448|gb|EFM92462.1| Cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 208

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    GS     R++A DILDM PI+GV F + DF +      + + +G +  D
Sbjct: 62  GGWSQYAVTQIGSKG---RIIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 AMFTAVKVRKPEASRDRSREVYIVATGYK 207


>gi|148652346|ref|YP_001279439.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter sp.
           PRwf-1]
 gi|189040324|sp|A5WCU8|RLME_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|148571430|gb|ABQ93489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter sp.
           PRwf-1]
          Length = 210

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/212 (41%), Positives = 127/212 (59%), Gaps = 4/212 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  ++ N+    SS+ W+  H++D YVQ AQ EG+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRITNKGLSKSSKAWMKEHLDDHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA R+ G       ++A DIL M+ +  V F + DF +   ++ +   +
Sbjct: 61  DLGSAPGSWSQVAGRLVGDEGI---LIASDILPMDALENVTFIQGDFREEAVFDRLMSEV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T GH  +D  R + LCE A  FAL +L  GG  ++K FQG     
Sbjct: 118 GDRQVDVVLSDMAPNTSGHTAVDQPRMIYLCELAVDFALRVLPKGGSLVMKVFQGEGEQQ 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           +   L+  F KV  +KP ASR  S E+F +A 
Sbjct: 178 LRQQLQSQFSKVRTIKPAASRPRSKEVFWVAT 209


>gi|167856350|ref|ZP_02479078.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parasuis 29755]
 gi|167852517|gb|EDS23803.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parasuis 29755]
          Length = 208

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 113/208 (54%), Gaps = 4/208 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++PG
Sbjct: 3   RKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKHGMTVVDLGAAPG 62

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDL 138
            WSQ      G   +  RV+A DILDM PI+GV F + DF +      + + +G G  D+
Sbjct: 63  GWSQYVVTQIG---DKGRVIACDILDMNPIVGVDFLQGDFCEESVLNALLERVGEGKVDV 119

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++ 
Sbjct: 120 VMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLREIRS 179

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP ASR  S E++++A G++
Sbjct: 180 LFNVVKVRKPEASRDRSREVYIVATGYK 207


>gi|119944572|ref|YP_942252.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychromonas ingrahamii
           37]
 gi|143461204|sp|A1ST38|RLME_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|119863176|gb|ABM02653.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychromonas ingrahamii
           37]
          Length = 217

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 119/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +S   SS+ W+  H+ND YV+ A  +G R+R+ +KL +IN+K ++++S   +VDLG++P
Sbjct: 11  KKSASASSKRWMYEHVNDFYVKEATKKGLRSRAVFKLEEINKKDKLIRSGMTVVDLGAAP 70

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPD 137
           GSWSQ A    G      +V+A DIL M+ I GV F + DF +      +   I G   D
Sbjct: 71  GSWSQWAVDTVGLKG---KVIACDILPMDSIAGVDFLQGDFREDAVVNALLARIAGHKVD 127

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDM+    G   ID  ++M L E A     E+L   G F+VK F G   +  +   +
Sbjct: 128 VVLSDMSPNMTGTVGIDQPKSMYLVELALEMCKEVLVKEGSFVVKVFMGSEFDLFMSEAR 187

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+ V   KP +SR+ S E++++A G++
Sbjct: 188 KCFKSVKTRKPDSSRSRSREVYVVATGYK 216


>gi|254438214|ref|ZP_05051708.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 307]
 gi|198253660|gb|EDY77974.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
           antarcticus 307]
          Length = 244

 Score =  252 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 144/230 (62%), Gaps = 6/230 (2%)

Query: 3   KPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           K      +R LT KVK+ R  + SS  WL R +NDPYV RA+ +G+R R+AYK+L++N+K
Sbjct: 11  KNSSGRGQRDLTVKVKSARGRKMSSTLWLQRQLNDPYVVRAKADGYRGRAAYKILELNDK 70

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILGVKFFK 116
                  +R+VDLG++PG W Q+A     +           ++ ID+ +MEPI G +   
Sbjct: 71  FDFFTPGKRVVDLGAAPGGWIQIAVPKVNALGERKGKPIGTILGIDLQEMEPIAGSELHV 130

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF++ D+ + ++  +GG  D+VLSDMA    GH++ DH R M+LCEAA +FA ++L  G
Sbjct: 131 LDFMEDDADQKVKDWLGGKADIVLSDMAASASGHKQTDHNRIMALCEAAAYFAFDVLEEG 190

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K   GG   D+  LLK +F+KV +VKP ASR++S E F++A GFR
Sbjct: 191 GVFVAKVLAGGAEADLQRLLKINFKKVQYVKPPASRSDSSEKFVVATGFR 240


>gi|254482484|ref|ZP_05095723.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2148]
 gi|214037175|gb|EEB77843.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2148]
          Length = 208

 Score =  252 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 125/207 (60%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + SS+ WL  H +D +VQ+A+ +G+R+R+ YKLL++ +K  +++    +VDLGS+PG 
Sbjct: 3   KKKSSSKAWLKEHHDDLFVQQAKRDGYRSRACYKLLELQDKDHLMKPGMTVVDLGSAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQV+A + G      RVVA DIL M+ +  V+F + DF +   +E I QAI G   DLV
Sbjct: 63  WSQVSADLVGHKG---RVVASDILHMDNLADVEFIQGDFTEDAVFERILQAIDGESVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D   +M L E A   A  +L+ GG F+ K FQG   +++    +  
Sbjct: 120 VSDMAPNMSGVAAVDQPGSMYLVELALDMARRVLSPGGSFVTKVFQGEGFDELFRDTRDS 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV+  KP ASR  S E++L+A GF+
Sbjct: 180 FDKVLTRKPKASRPRSREVYLVASGFK 206


>gi|53803869|ref|YP_114286.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
           capsulatus str. Bath]
 gi|81681781|sp|Q607B2|RLME_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|53757630|gb|AAU91921.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
           capsulatus str. Bath]
          Length = 210

 Score =  252 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS  WL  H +D YV+ AQ +G+R+R+ +KL++++E  ++      ++DLG++PG 
Sbjct: 3   KRSRSSGRWLAEHFSDEYVRLAQEKGYRSRAVFKLMELDEHDRLFAPGTTVIDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQ AAR  G++    RV+A+D+L MEP+ GV   + DFLD   +  + +AIGG   D+V
Sbjct: 63  WSQYAARRVGASG---RVLALDMLPMEPLPGVTVVQGDFLDDAVFHAMLEAIGGRRVDVV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G+R +D  R+M L E A   A  +L   G F+VK FQG    + +   +K 
Sbjct: 120 LSDMAPNMSGNRNVDQPRSMYLAELAFDLAERVLGPKGSFVVKLFQGEGFQEYVARARKA 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASRA S E++L+ KG+R
Sbjct: 180 FGSVGMRKPKASRARSAEIYLVGKGYR 206


>gi|120611284|ref|YP_970962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax citrulli
           AAC00-1]
 gi|143459163|sp|A1TQF0|RLME_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120589748|gb|ABM33188.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax citrulli
           AAC00-1]
          Length = 218

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E   +++  + +VDLGS+P
Sbjct: 4   NTKSKKVNKAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAP 63

Query: 79  GSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQ   R            N  ++A+DIL MEPI GV F + DF + D    +++A+ 
Sbjct: 64  GAWSQYLRRRMAPAGAAAGQLNGTLIALDILPMEPIEGVTFLQGDFREEDVLARLQEAVQ 123

Query: 134 GNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
             P D+V+SDMA    G   +D +R   L E A  FA + L   G  +VK F G     +
Sbjct: 124 ARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAQQHLKPDGALVVKLFHGSGYAQL 183

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + L K+HF+ V  +KP ASR +S E FL+  G RK
Sbjct: 184 VQLFKEHFRTVKPMKPKASRDKSSETFLVGMGLRK 218


>gi|301156346|emb|CBW15817.1| 23S rRNA methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 210

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      RV+A DILDM PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILDMNPIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLAKKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRGRSREVYIVASGYK 208


>gi|330950314|gb|EGH50574.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae Cit
           7]
          Length = 216

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S +WL  H +D YV+ AQ +G+R+R++YKLL+I EK ++++    ++DLG++ G W
Sbjct: 3   RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAARGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           SQV +R+ G      R++A DIL+M+ I  V F + DF +    E I +A+G    DLV+
Sbjct: 63  SQVTSRLIG---GQGRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M LCE A   A  +L  GGDFL+K FQG   +     ++K F
Sbjct: 120 SDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP +SR  S E +LLA+GFR
Sbjct: 180 DKVQMRKPSSSRDRSREQYLLARGFR 205


>gi|260775431|ref|ZP_05884328.1| cell division protein FtsJ [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608612|gb|EEX34777.1| cell division protein FtsJ [Vibrio coralliilyticus ATCC BAA-450]
          Length = 209

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D +   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKFANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G   +  +++A D+L M+PI GV F + DF +    E +   I  + 
Sbjct: 61  APGGWSQYAAKIVG---DEGKIIACDLLPMDPIAGVSFLQGDFREDAVLEALLDRIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            ++V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VNVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDQYVKD 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKVVKIRKPDSSRARSREVFIVATGYK 208


>gi|56460084|ref|YP_155365.1| 23S rRNA methyltransferase J [Idiomarina loihiensis L2TR]
 gi|81362904|sp|Q5QXK8|RLME_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56179094|gb|AAV81816.1| 23S rRNA methylase [Idiomarina loihiensis L2TR]
          Length = 208

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 120/209 (57%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS+ WL  H +D +VQ+AQ +G R+R+ +KL +I ++ ++++  + +VDLG++P
Sbjct: 2   GKKRSVSSQRWLKEHFDDQFVQKAQKKGLRSRAVFKLEEIQKRDKLIKKGQTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ  A     +    +++A DIL M+PI GV F + DF +    E + + IGG   D
Sbjct: 62  GGWSQYVADYFNGDG---QIIACDILAMDPIAGVDFLQGDFREESVLEALLERIGGKNVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA    G+  +D  R+M L E A     ++L  GG F VK FQG      L  ++
Sbjct: 119 VVLSDMAPNMSGNGTVDQARSMYLVELALDMCHQVLKPGGSFAVKVFQGQGFESFLKDVR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP +SRA S E++L+A  ++
Sbjct: 179 AAFNDVKTRKPESSRARSREVYLVATDYK 207


>gi|254362182|ref|ZP_04978298.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           PHL213]
 gi|261492457|ref|ZP_05989012.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494533|ref|ZP_05991018.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093751|gb|EDN74694.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           PHL213]
 gi|261309826|gb|EEY11044.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311873|gb|EEY13021.1| rRNA large subunit methyltransferase J [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 208

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            R    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPD 137
           G WSQ      GS     RV+A DILDM PI+GV F + DF +      + + +G    +
Sbjct: 62  GGWSQYVVTQIGSKG---RVIACDILDMNPIVGVDFLQGDFREESVLNALLERVGEDKVN 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSFVVKVFQGEGFDEYLREIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 SLFSVVKVRKPEASRDRSREVYIVATGYK 207


>gi|54307808|ref|YP_128828.1| 23S rRNA methyltransferase J [Photobacterium profundum SS9]
 gi|81400134|sp|Q6LUJ9|RLME_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|46912231|emb|CAG19026.1| 23S rRNA methylase [Photobacterium profundum SS9]
          Length = 209

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS  WL  H +D YVQ AQ  G+R+R+ +K+ +I +K ++L+    +VDLG+
Sbjct: 1   MSRNKQSASSGRWLKEHFDDKYVQEAQKRGYRSRAIFKIEEIQKKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA + G   +  +V+A DIL M+ + GV F + DF +      + + I  + 
Sbjct: 61  APGGWSQYAAEVVG---DEGQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VLSDMA    G+   D  R M L E A     ++L   G F VK FQG   +  L  
Sbjct: 118 VDVVLSDMAPNMSGNLASDQPRAMYLVELALEMCKQVLAPNGSFAVKVFQGEGFDQYLAE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR  S E++++A G++
Sbjct: 178 IRNMFKVVKIRKPDSSRDRSREVYIVATGYK 208


>gi|15602302|ref|NP_245374.1| 23S rRNA methyltransferase J [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81637177|sp|Q9CNJ3|RLME_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|12720691|gb|AAK02521.1| FtsJ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      R++A DIL+M+PI+GV F + DF D      +   +G G 
Sbjct: 61  APGGWSQYVVSQIG---GAGRIIACDILEMDPIVGVDFLQGDFRDEKVLAALLARVGEGK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLATKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFSVVKVRKPEASRGRSREVYIVATGYK 208


>gi|83644093|ref|YP_432528.1| 23S rRNA methylase [Hahella chejuensis KCTC 2396]
 gi|123534482|sp|Q2SMM1|RLME_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83632136|gb|ABC28103.1| 23S rRNA methylase [Hahella chejuensis KCTC 2396]
          Length = 206

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS  WLN H +D YV++++ +G+R+R++YKL++++ + ++L+    ++DLG++PG 
Sbjct: 2   GRSKSSSRWLNEHHSDVYVKKSKEDGFRSRASYKLIELDRQDKLLRPGMTVIDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQV A + G   +  +VVA D+L M+ I GV FF+ DF + +  + I   +   P DLV
Sbjct: 62  WSQVVADVVG---DQGKVVACDLLSMDSIAGVTFFQGDFTEDEMLDAILNEVNSRPVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G + +D  + M L E A   A  +L   G F+ K FQG   + IL   +  
Sbjct: 119 ISDMAPNMSGMKSVDIPKAMYLVELALDLACRVLKKNGCFVAKVFQGEGFDQILQESRGR 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASRA S E++L+AKGFR
Sbjct: 179 FSSVNIRKPDASRARSREIYLVAKGFR 205


>gi|222110672|ref|YP_002552936.1| ribosomal RNA methyltransferase rrmj/ftsj [Acidovorax ebreus TPSY]
 gi|221730116|gb|ACM32936.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax ebreus TPSY]
          Length = 220

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 129/218 (59%), Gaps = 7/218 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K + +S + + + WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KAQTKSKKVN-KAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLG 60

Query: 76  SSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           SSPG+WSQ   R    +       N  ++A+DIL MEPI GV F + DF + +    +++
Sbjct: 61  SSPGAWSQYVRRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLARLQE 120

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G P D+V+SDMA    G   +D +R   L E A  FA+  L   G  +VK F G   
Sbjct: 121 AVQGRPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + ++ L K  F+ V  +KP ASR +S E FL+  G ++
Sbjct: 181 SQLVQLFKDTFRVVKPMKPKASRDKSSETFLVGMGLKR 218


>gi|221066109|ref|ZP_03542214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           KF-1]
 gi|264679344|ref|YP_003279251.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           CNB-2]
 gi|299532303|ref|ZP_07045696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           S44]
 gi|220711132|gb|EED66500.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           KF-1]
 gi|262209857|gb|ACY33955.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           CNB-2]
 gi|298719711|gb|EFI60675.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
           S44]
          Length = 220

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 7/218 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K K +S + + ++WL+ HINDPYV+ AQ +G+RAR+AYKL +I+E  +++Q    +VDLG
Sbjct: 2   KTKTKSKKVN-KNWLHDHINDPYVKAAQKDGYRARAAYKLKEIDESLKLIQPGHTVVDLG 60

Query: 76  SSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
            +PG+WSQ   R    +       N R++++D+L MEPI GV + + DF +      + +
Sbjct: 61  CAPGAWSQYVRRRLSPSGAAVGELNGRIISLDLLPMEPIEGVHYIQGDFREEAVLAQLEE 120

Query: 131 AIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+GG   D+V+SDMA    GH   D  R   L E A  FA+  +   G  +VK F G   
Sbjct: 121 AMGGGKADVVVSDMAPNLSGHGATDGARVAVLIEMAVDFAINNMKPEGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           N+++ L K+ F+ V  +KP ASR  S E+FL+  G ++
Sbjct: 181 NELVDLFKQTFKVVKPIKPKASRDRSAEIFLVGMGLKQ 218


>gi|284006661|emb|CBA71923.1| 23S rRNA methyltransferase J [Arsenophonus nasoniae]
          Length = 209

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 120/211 (56%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+    SS  WL  H +D YV +AQ +G+R+R+ +KL +I +  +I +    +VDLG+
Sbjct: 1   MANKKRSASSSRWLQEHFSDKYVLQAQKKGFRSRAWFKLDEIQQSDKIFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A    G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYAVSKVG---LTGRLIACDLLLMDPIVGVDFLQGDFRDEQILKALLERVGDKK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +V+SDMA    G   +D  R+M L E A     ++L  GG F+VK FQG   ++ L  
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLATGGSFIVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F KV   KP ASR+ S E++++A G +
Sbjct: 178 IRSLFLKVKIRKPDASRSRSREVYIVATGRK 208


>gi|329120415|ref|ZP_08249081.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327462099|gb|EGF08427.1| ribosomal RNA large subunit methyltransferase J [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 228

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            +  +   SS+ WL  H+ND YV +AQ +G+RAR+AYKLL+INEK ++++    + DLGS
Sbjct: 21  TQMAARSKSSKAWLREHVNDHYVHQAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGS 80

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PGSWSQ AA++ G++    +V A+DIL MEP+ GV F + DF + D      + +GG  
Sbjct: 81  APGSWSQAAAKLAGASG---KVFALDILPMEPVDGVSFVQGDFREADVLARFEELLGGRA 137

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+ DMA    GH   D  +++ LC+ A  FA   L  GG FLVK FQG    +    
Sbjct: 138 LDLVICDMAPNMSGHSVTDQAKSLCLCQLALDFARCRLKPGGSFLVKAFQGAGYPEFTAQ 197

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++ F  V   KP ASR  S E +LL K  R
Sbjct: 198 MRETFATVQTRKPDASRGRSSETYLLGKNKR 228


>gi|71279764|ref|YP_270127.1| 23S rRNA methyltransferase J [Colwellia psychrerythraea 34H]
 gi|83305657|sp|Q47YJ3|RLME_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71145504|gb|AAZ25977.1| ribosomal RNA large subunit methyltransferase J [Colwellia
           psychrerythraea 34H]
          Length = 209

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + N+  + SS+ WL+ H +D YV++AQ  G R+R+ +KL +IN K ++++   ++VDLG+
Sbjct: 1   MANKKHKASSQRWLDEHFDDEYVKKAQRLGLRSRAVFKLEEINIKDRLIKPGMKVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WS+ A ++ G   +  +VVA DIL M+ I+GV F + DF + +  + +   I G  
Sbjct: 61  APGGWSEYAVKVVG---DKGQVVACDILPMDAIVGVDFLEGDFREEEVLDALLTRINGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+   D  R+M L E A     ++L   G F+VK FQG    D +  
Sbjct: 118 IDVVMSDMAANMTGNESADSARSMYLVELALDMCSQVLKPNGAFVVKVFQGAGFEDYMKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  F+ V   KP +SRA S E++L+A G++
Sbjct: 178 TRAVFKAVKTRKPESSRARSREVYLVATGYK 208


>gi|91228945|ref|ZP_01262842.1| cell division protein FtsJ [Vibrio alginolyticus 12G01]
 gi|91187505|gb|EAS73840.1| cell division protein FtsJ [Vibrio alginolyticus 12G01]
          Length = 209

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA+I G   ++ +++A D+L M+PI GV F + DF D    E + + I  + 
Sbjct: 61  APGGWSQYAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLERIQPSM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +  +  
Sbjct: 118 VDVVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLARNGSFVVKVFQGEGFDQYVKE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SRA S E+F++A G++
Sbjct: 178 VRDMFKAVKIRKPDSSRARSREVFVVATGYK 208


>gi|33152554|ref|NP_873907.1| 23S rRNA methyltransferase J [Haemophilus ducreyi 35000HP]
 gi|81423348|sp|Q7VLF2|RLME_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33148778|gb|AAP96296.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           ducreyi 35000HP]
          Length = 208

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS  WL  H  D +VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG++P
Sbjct: 2   GKKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQSDRLFRPGMTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ A    G   N  R++A DILDM PI+GV F + DF ++     +   +G    D
Sbjct: 62  GGWSQYAVTQIG---NQGRIIACDILDMNPIVGVDFLQGDFREVSVLNALLARVGDEMVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   +D L  ++
Sbjct: 119 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 179 SMFTTVKVRKPEASRDRSREVYIVATGYK 207


>gi|302879458|ref|YP_003848022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
           capsiferriformans ES-2]
 gi|302582247|gb|ADL56258.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
           capsiferriformans ES-2]
          Length = 206

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
             +S+ W+  HINDP+VQ+AQ +G+R+R+AYKL++INEK  +++    IVDLG++PG W 
Sbjct: 4   SKTSKQWMREHINDPFVQQAQKDGYRSRAAYKLIEINEKDHLIKPGMVIVDLGATPGGWC 63

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           QVA  I G      +V+A+D+L +EP+ GV+F + DF D    + + +++ G P  LV+S
Sbjct: 64  QVAGAIMGETG---KVIALDLLPLEPLRGVEFIQGDFRDEAVLKKLEESLQGKPVGLVIS 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D  R++ L E A  FA + L   G FLVK FQG      + L++  F 
Sbjct: 121 DMAPNFSGVSAVDQDRSIYLAELAMEFAFDHLTRDGSFLVKVFQGTGFEAYMKLMRTKFT 180

Query: 202 KVIHVKPVASRAESVEMFLLAKG 224
           +V+  KP ASR  S E++LL  G
Sbjct: 181 RVVARKPKASRDRSSEVYLLGTG 203


>gi|148361109|ref|YP_001252316.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila str. Corby]
 gi|148282882|gb|ABQ56970.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila str. Corby]
          Length = 233

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG 
Sbjct: 29  SRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGG 88

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           W+Q A+        + R+VA+DIL M+ +  V+F   DF + +   E I        DL+
Sbjct: 89  WTQYASEKMK---GSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLL 145

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  
Sbjct: 146 LSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARAS 205

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 206 FEKVVIRKPSASRSRSKETYLLAKGY 231


>gi|323144908|ref|ZP_08079471.1| ribosomal RNA large subunit methyltransferase J [Succinatimonas
           hippei YIT 12066]
 gi|322415306|gb|EFY06077.1| ribosomal RNA large subunit methyltransferase J [Succinatimonas
           hippei YIT 12066]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 3/207 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R    S   WL  H +DPYV+ A   G R+R+++KL ++ ++ +++++   +VDLG++PG
Sbjct: 4   RKRTASQTRWLKEHFSDPYVKEAHKRGLRSRASFKLEELQQRDRLIKAGNIVVDLGAAPG 63

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
            WS+ A +  G      +V+A DIL + PI  V F + DF D   +  +   IG   D+V
Sbjct: 64  GWSEFAVKCVGEKG---KVIACDILPIRPIRNVTFLQGDFRDEAVFLKLYSMIGVGADVV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A   A  +L IGG F+VK F G  + + L  L+K 
Sbjct: 121 LSDMAPNMSGTTAIDQPRAMLLSELALDMARRVLRIGGSFVVKVFTGSGSQEYLAELRKD 180

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASR  S E++++A GF+
Sbjct: 181 FSTVKVRKPDASRDRSREVYMVATGFK 207


>gi|93006845|ref|YP_581282.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter
           cryohalolentis K5]
 gi|122414928|sp|Q1Q955|RLME_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|92394523|gb|ABE75798.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter
           cryohalolentis K5]
          Length = 210

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/211 (42%), Positives = 129/211 (61%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  +++N+    SS  W+  HI+D YVQ+AQ +G+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRIENKKLSKSSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA  + G       ++A DIL M+ +  V F + DF + + ++ I   +
Sbjct: 61  DLGSAPGSWSQVAGHLVGEKGI---LIASDILPMDTLPDVTFIQGDFREPEVFDRIMAEV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T G+  ID  R M LCE A  FAL  L  GG  ++K FQG  T +
Sbjct: 118 GDRQVDVVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEGGALIMKVFQGEGTQE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   ++  F K+  +KP ASR  S E+F +A
Sbjct: 178 LRKQMQADFSKIRSIKPGASRPRSKEIFWIA 208


>gi|126642713|ref|YP_001085697.1| cell division protein [Acinetobacter baumannii ATCC 17978]
          Length = 199

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H++DP+V++AQ EG+RAR+AYKLL+I EK+++++    +VDLG++PGSWSQ+A ++ 
Sbjct: 1   MREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLV 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
           GS      V+A DIL M+ +  V F + DF +   +E +   + G   D+V+SDMA  T 
Sbjct: 61  GSKG---LVIASDILPMDALPDVTFLQGDFREEAVFEKLLNILNGRQVDIVISDMAPNTS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+R +D  R + LCE A  FA ++L   G F+VK FQG   ++    +   F  +   KP
Sbjct: 118 GNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFDVLKTAKP 177

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASRA S E+FL+ +G +K
Sbjct: 178 AASRARSKEVFLVGQGRKK 196


>gi|71066294|ref|YP_265021.1| 23S rRNA methylase, heat shock protein [Psychrobacter arcticus
           273-4]
 gi|83305666|sp|Q4FQX1|RLME_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71039279|gb|AAZ19587.1| 23S rRNA methylase, heat shock protein [Psychrobacter arcticus
           273-4]
          Length = 210

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 4/211 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  +++N+    SS  W+  HI+D YVQ+AQ +G+RAR+AYKLL+INEK  +++    +V
Sbjct: 1   MATRIENKKLSKSSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLGS+PGSWSQVA ++ G       ++A DIL M+ +  V F + DF + + ++ I   +
Sbjct: 61  DLGSAPGSWSQVAGQLVGEKGI---LIASDILPMDTLPDVTFIQGDFREPEVFDHIMAEV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G    D+VLSDMA  T G+  ID  R M LCE A  FAL  L  GG  ++K FQG  T +
Sbjct: 118 GDRQVDVVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEGGALIMKVFQGEGTQE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   ++  F K+  +KP ASR  S EMF +A
Sbjct: 178 LRKQMQADFSKIRSIKPGASRPRSKEMFWIA 208


>gi|51473362|ref|YP_067119.1| rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA
           methyltransferase) [Rickettsia typhi str. Wilmington]
 gi|81390247|sp|Q68XK5|RLME_RICTY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|51459674|gb|AAU03637.1| rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA
           methyltransferase) [Rickettsia typhi str. Wilmington]
          Length = 227

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/222 (45%), Positives = 151/222 (68%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+LEG+R+R+AYKLL+I++K ++  
Sbjct: 6   SGYRNKIVRVKTAKKRPISSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHDKFRLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N  N ++++ID+L +EPI+GV+F + DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDLLKIEPIVGVEFLQKDFFEKDT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I   + G  DLV+SDMA  TIGH+  DH+RT+ LCE A  FAL++L     F+ K F
Sbjct: 126 EELIIHGLDGKADLVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSCHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG    +L  +K+ F+ V H KPV+SR+ES E++L+A   +
Sbjct: 186 RGGAETALLNKVKREFRTVKHFKPVSSRSESTEIYLVALNKK 227


>gi|332530812|ref|ZP_08406738.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
           ATCC 19624]
 gi|332039724|gb|EGI76124.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
           ATCC 19624]
          Length = 219

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/217 (38%), Positives = 121/217 (55%), Gaps = 7/217 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K++ +S + + + WLN H+NDPYV+ AQ EG+RAR+AYKL +I+E  ++++  + IVDLG
Sbjct: 2   KIQTKSKKVN-KAWLNDHVNDPYVKLAQKEGYRARAAYKLKEIDETLRLVKPGQVIVDLG 60

Query: 76  SSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
            +PG+WSQ   R            N  V+ +D+L MEPI GV++ + DF +      +  
Sbjct: 61  CAPGAWSQYLRRRLAPQGAAVGELNGSVIGLDLLPMEPIEGVQYIQGDFREAAVLAQLEA 120

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            + G P DLV+SDMA    G   +D  R   L   A  F    L   G  + K F G   
Sbjct: 121 LLQGRPVDLVVSDMAPNLSGVASVDTARVEELVALAIDFCNAHLKPSGTLVAKVFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++L L K +F+ V  +KP ASR  S E FL+  G +
Sbjct: 181 NELLALFKNNFKTVKPLKPKASRDRSSETFLIGSGLK 217


>gi|329889243|ref|ZP_08267586.1| ftsJ-like methyltransferase family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844544|gb|EGF94108.1| ftsJ-like methyltransferase family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 240

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 146/229 (63%), Gaps = 8/229 (3%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           MV+ P  G+++ R + QK+K    +  SS+ W+ R ++D +  RA+ EGWR+R+A+KL++
Sbjct: 17  MVRLPTGGTAAGRKVGQKIKTADKKTLSSQAWIKRQLSDEWSDRARAEGWRSRAAFKLME 76

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I++K ++++   R++DLG++PG W QVA     +      V  +D+L +EPI G    + 
Sbjct: 77  IDDKFRLIKRGSRVIDLGAAPGGWVQVALDRGAAA-----VAGVDLLMIEPIPGATLIQA 131

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF D    + +  AIGG PDLVLSDMA+ T+GHR+ DHL+ ++L E A  FA+  L  GG
Sbjct: 132 DFTDPGVDQQMLDAIGGPPDLVLSDMAHNTVGHRQTDHLKIIALIEIAADFAIRTLRPGG 191

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +F+ K FQGG    +L  L++ F+ V +VKP +SR  S E+FL+A   R
Sbjct: 192 NFVSKNFQGGDAGGVLTRLREEFETVKYVKPESSRKGSAEVFLVALNKR 240


>gi|238750119|ref|ZP_04611622.1| Ribosomal RNA large subunit methyltransferase J [Yersinia rohdei
           ATCC 43380]
 gi|238711663|gb|EEQ03878.1| Ribosomal RNA large subunit methyltransferase J [Yersinia rohdei
           ATCC 43380]
          Length = 209

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 113/199 (56%), Gaps = 4/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H +D YV +AQ +G R+R+ +KL +I +  ++ +    +VDLG++PG WSQ     
Sbjct: 13  WLQEHFSDKYVIQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVTQ 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
            G      R++A D+L M+PI+GV F + DF D    + + + +G     +V+SDMA   
Sbjct: 73  IGGKG---RIIACDLLPMDPIVGVDFLQGDFTDEQVLKALLERVGDKKVQVVMSDMAPNM 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  ++M L E A     ++L  GG FLVK FQG   ++ L  ++  F KV   K
Sbjct: 130 SGTPAVDIPKSMYLVELALDMCRDVLAPGGSFLVKVFQGDGFDEYLREIRSLFTKVKIRK 189

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASRA S E++++A G +
Sbjct: 190 PDASRARSREVYIVATGRK 208


>gi|332288654|ref|YP_004419506.1| 23S rRNA methyltransferase J [Gallibacterium anatis UMN179]
 gi|330431550|gb|AEC16609.1| 23S rRNA methyltransferase J [Gallibacterium anatis UMN179]
          Length = 209

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  D +VQ+A  +  R+R+ +KL +I +  ++ + N  +VDLG+
Sbjct: 1   MGKKKRSASSTRWLNEHFKDKFVQQAHKQKLRSRAYFKLDEIQKTDKLFKPNMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      RV+A DILDM+PI+GV F + DF +      + + IG   
Sbjct: 61  APGGWSQYVVTQIGERG---RVIACDILDMDPIVGVDFLQGDFREEKVLNTLLEKIGDDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASQGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFKTVKVRKPEASRDRSREVYIVAMGYK 208


>gi|114321125|ref|YP_742808.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311297|sp|Q0A769|RLME_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114227519|gb|ABI57318.1| 23S rRNA Um-2552 2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 209

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL+ H +D +VQ+AQ  G+R+R+A+KLL+I EK ++++    +VDLG++PG W QVAA +
Sbjct: 13  WLDEHHSDHWVQQAQKAGYRSRAAFKLLEIQEKDRLIRPGMTVVDLGAAPGGWCQVAAEL 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G       V A+DIL ME + GV   + DF +    + + QA+ G P DLVLSDMA   
Sbjct: 73  VGDRGA---VFALDILPMEALPGVHVIQGDFTEEAPLQALLQALEGRPVDLVLSDMAPNL 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G R +D  R M L E A  FA ++L  GGDFL K F G   +D    L++ F KVI  K
Sbjct: 130 SGVRVVDQPRAMYLAELALDFAGQVLQPGGDFLTKVFHGEGLDDYRRDLQRQFSKVITRK 189

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S E +LLA+GF
Sbjct: 190 PRASRARSRESYLLARGF 207


>gi|297539174|ref|YP_003674943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera sp. 301]
 gi|297258521|gb|ADI30366.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera sp. 301]
          Length = 206

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + SS+ W++ HIND +V+RAQ EG+RAR+AYKL +I++K ++++    IVDLGS+PGS
Sbjct: 2   KLKPSSKAWMHEHINDEFVKRAQKEGYRARAAYKLTEIDDKDKLIKPGMTIVDLGSTPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVA +         R++A+D+L+MEPI GV+F + DF +    E + +++ G   DLV
Sbjct: 62  WSQVAVQRLK---GQGRIIALDLLEMEPIKGVEFIQGDFREETILEILEKSLNGKQVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           ++DMA    G   +D      L E A  F+ E L   G+FLVK F G   +DI+  ++  
Sbjct: 119 IADMAPNMSGITIVDQAGAAYLTELALEFSKEWLKPSGNFLVKVFIGEGFDDIVKNMRTI 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV+  KP ASR  S E++LL  G +
Sbjct: 179 FDKVVTRKPKASRGRSSEVYLLGLGRK 205


>gi|304413876|ref|ZP_07395293.1| 23S rRNA methylase [Candidatus Regiella insecticola LSR1]
 gi|304283596|gb|EFL91991.1| 23S rRNA methylase [Candidatus Regiella insecticola LSR1]
          Length = 213

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/215 (37%), Positives = 116/215 (53%), Gaps = 4/215 (1%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +   + N+    SS  WL  H +D YV +AQ +G R+R+ +KL +I    ++ +    +V
Sbjct: 1   MENSMANKKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQRSDKLFKLGMTVV 60

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG++PG WSQ A    G      RVVA DIL M+PI+GV F + +F D      + + +
Sbjct: 61  DLGAAPGGWSQYAVSQVGEKG---RVVACDILPMDPIVGVDFLQGNFCDESILNALLERV 117

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           G     +V+SDMA    G  +ID  R M L E A      +L  GG FLVK  QG   ++
Sbjct: 118 GDKKVQVVMSDMAPNMSGTPEIDIPRAMYLVELALDMCRSILAPGGGFLVKVLQGSGFDE 177

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 178 YLREMRSLFMKVKVRKPDASRARSREVYIVATGRK 212


>gi|71906582|ref|YP_284169.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Dechloromonas aromatica
           RCB]
 gi|83305658|sp|Q47HI2|RLME_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71846203|gb|AAZ45699.1| 23S rRNA Um-2552 2'-O-methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 205

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+  HIND YVQ A+ EGWR+R+A+KL+++++K ++L+    +VDLG++PG 
Sbjct: 2   KRTRTSKAWMREHINDTYVQLARKEGWRSRAAFKLMEMDDKDKLLKHGEVVVDLGATPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WSQVA +  G       V A+D+L+MEPI GV F + DF + +  + + + +G     LV
Sbjct: 62  WSQVAVKRVGDGG---LVFALDLLEMEPIHGVHFIQGDFREDEVLQQLEEQLGERRVGLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R M L E    F+   L   G FLVK FQG      L  +++ 
Sbjct: 119 MSDMAPNMSGVPLVDQARIMHLAELGLEFSRVHLKPEGAFLVKVFQGTDYETFLKQMRET 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+ V   KP ASR  S E++LL +  R
Sbjct: 179 FKTVAVRKPDASRDRSPELYLLGRTLR 205


>gi|294677155|ref|YP_003577770.1| ribosomal RNA large subunit methyltransferase J [Rhodobacter
           capsulatus SB 1003]
 gi|294475975|gb|ADE85363.1| ribosomal RNA large subunit methyltransferase J [Rhodobacter
           capsulatus SB 1003]
          Length = 259

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 146/245 (59%), Gaps = 19/245 (7%)

Query: 1   MVKPP-------------GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEG 46
           M KPP                 +R L  +VK  +  + SS  WL R +NDPYV RA+ EG
Sbjct: 1   MTKPPSGKSGGAGSGKNTSGRGQRDLRVRVKTAKGRKLSSTLWLERQLNDPYVVRAKKEG 60

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAI 101
           +R R+AYK++++++K + L    R+VDLG +PG W QVA     +           V+ +
Sbjct: 61  YRGRAAYKIMELDDKFRFLVPGARVVDLGCAPGGWCQVAVARVNALGEKGGKKVGTVLGV 120

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           D+ ++  I G +  + DFL+  + + ++  +GG  D+V+SDMA    G++++DHLR ++L
Sbjct: 121 DLQEIAAIAGAELHQLDFLEDGADDKVKAWLGGRADVVMSDMAAAASGNQQVDHLRIITL 180

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           CE A +FA ++L +GG F+ K   GG    ++ +LKK+F+KV+++KP +SR +S E F++
Sbjct: 181 CEHAAYFAFDVLELGGTFVAKVLAGGAEQGLMTVLKKNFEKVVNMKPPSSRKDSSEKFVV 240

Query: 222 AKGFR 226
           A GFR
Sbjct: 241 ATGFR 245


>gi|52842994|ref|YP_096793.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52630105|gb|AAU28846.1| ribosomal RNA large subunit methyltransferase J [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 247

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG 
Sbjct: 43  NRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGG 102

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           W+Q A+        + R+VA+DIL M+ +  V+F   DF + +   E I        DL+
Sbjct: 103 WTQYASEKM---RGSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLL 159

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  
Sbjct: 160 LSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARAS 219

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 220 FEKVVIRKPSASRSRSKETYLLAKGY 245


>gi|258544935|ref|ZP_05705169.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
           hominis ATCC 15826]
 gi|258519855|gb|EEV88714.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
           hominis ATCC 15826]
          Length = 208

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 4/207 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H ND YVQ+AQ EG+R+R+ YKL++I EK ++++    +V+LG++PG W
Sbjct: 3   RSKTSQRWLKEHFNDIYVQKAQQEGYRSRAVYKLMEIQEKDRLIRPGMVVVELGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQ  A+  G      R++A+DIL M+ +  V F   DF +    + +   +G +  +LV+
Sbjct: 63  SQYVAQCLG---GRGRMIALDILPMDALPDVTFILGDFREQAVLDALYAELGDSAVNLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA  T G R +D  ++M L E A  FA   L  GGDFL K F G   + +L  LK  F
Sbjct: 120 SDMAPNTSGVRSVDQAKSMYLVELALDFAQSRLAAGGDFLTKIFHGPGFDTLLRSLKSQF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFRK 227
             V   KP ASRA S E +LLA+GF++
Sbjct: 180 LTVQTRKPEASRARSQETYLLARGFKR 206


>gi|296108439|ref|YP_003620140.1| cell division protein methyltransferase FtsJ [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295650341|gb|ADG26188.1| cell division protein methyltransferase FtsJ [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 206

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG 
Sbjct: 2   NRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           W+Q A+        + R+VA+DIL M+ +  V+F   DF + +   E I        DL+
Sbjct: 62  WTQYASEKMK---GSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLL 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  
Sbjct: 119 LSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARAS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 179 FEKVVIRKPSASRSRSKETYLLAKGY 204


>gi|143459181|sp|A1W8H0|RLME_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 220

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 7/218 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           K + +S + + + WL+ H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KAQTKSKKVN-KAWLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLG 60

Query: 76  SSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           SSPG+WSQ   R    +       N  ++A+DIL MEPI GV F + DF + +    +++
Sbjct: 61  SSPGAWSQYVRRRLSPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLAGLQE 120

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+   P D+V+SDMA    G   +D +R   L E A  FA+  L   G  +VK F G   
Sbjct: 121 AVQARPVDVVVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + ++ L K  F+ V  +KP ASR +S E FL+  G ++
Sbjct: 181 SQLVQLFKDTFRVVKPMKPKASRDKSSETFLVGMGLKR 218


>gi|262163950|ref|ZP_06031689.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus VM223]
 gi|262172288|ref|ZP_06039966.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus MB-451]
 gi|261893364|gb|EEY39350.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus MB-451]
 gi|262027478|gb|EEY46144.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio mimicus VM223]
          Length = 209

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I    
Sbjct: 61  APGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPEM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 178 VRDLFKVVKIRKPDSSRSRSREVFIVATGYK 208


>gi|54298779|ref|YP_125148.1| ribosomal RNA large subunit methyltransferase (cell division
           protein FtsJ) [Legionella pneumophila str. Paris]
 gi|81369695|sp|Q5X1A0|RLME_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305660|sp|Q5ZRT1|RLME_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|53752564|emb|CAH13996.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella pneumophila str. Paris]
          Length = 206

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG 
Sbjct: 2   NRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           W+Q A+        + R+VA+DIL M+ +  V+F   DF + +   E I        DL+
Sbjct: 62  WTQYASEKM---RGSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLL 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  
Sbjct: 119 LSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARAS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 179 FEKVVIRKPSASRSRSKETYLLAKGY 204


>gi|189040698|sp|A5IHX0|RLME_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
          Length = 206

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG++PG 
Sbjct: 2   SRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           W+Q A+        + R+VA+DIL M+ +  V+F   DF + +   E I        DL+
Sbjct: 62  WTQYASEKMK---GSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLL 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  
Sbjct: 119 LSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARAS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 179 FEKVVIRKPSASRSRSKETYLLAKGY 204


>gi|15604038|ref|NP_220553.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
           Madrid E]
 gi|9910874|sp|Q9ZE00|RLME_RICPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|3860729|emb|CAA14630.1| CELL DIVISION PROTEIN FTSJ (ftsJ) [Rickettsia prowazekii]
 gi|292571757|gb|ADE29672.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
           prowazekii Rp22]
          Length = 227

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 151/222 (68%), Gaps = 3/222 (1%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S  R    +VK  +    SS +WL R +NDPYV +A+LEG+R+R+AYKLL+I+ K ++  
Sbjct: 6   SGYRNKIVRVKTSKKRPISSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHYKFRLFT 65

Query: 67  SNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            N +IVDLG++PG WSQVA+++  +  N  N ++++ID+L++EPI+GV+F + DF + D+
Sbjct: 66  PNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDLLEIEPIVGVEFLQKDFFEKDT 125

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E I   + G  D+V+SDMA  TIGH+  DH+RT+ LCE A  FAL++L     F+ K F
Sbjct: 126 EELIIHNLEGKADIVMSDMASNTIGHKATDHMRTLLLCEQAFEFALKVLKPSCHFIAKIF 185

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +GG    +L  +K+ F+ V H KPV+SR+ES E++L+A   +
Sbjct: 186 RGGAETALLNKVKREFRTVKHFKPVSSRSESTEIYLVALNKK 227


>gi|119504342|ref|ZP_01626422.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
           proteobacterium HTCC2080]
 gi|119459850|gb|EAW40945.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
           proteobacterium HTCC2080]
          Length = 208

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             + SSR WL  H  D YVQRA  EG+R+R+ YKL +IN++ ++++    ++DLG++PG 
Sbjct: 3   KKRSSSRAWLKEHREDLYVQRAVKEGYRSRACYKLKEINDRDRVIKPGMTVLDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVA  + G+     RV+A DIL M+ +  V+F   DF +   +E +   +G +  D+V
Sbjct: 63  WSQVAVEMVGARG---RVIASDILPMDSLADVEFILGDFTEEAVFEALLNLLGESAVDVV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R+M L E A   A + L  GG  + K FQG     ++   +++
Sbjct: 120 LSDMAPNMSGVSAVDQPRSMYLVELALDLATQTLEKGGTLVSKVFQGEGFEAVMSTARQN 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F +V+  KP ASR  S E++L+A GF+
Sbjct: 180 FDRVLTRKPEASRPRSREVYLVASGFK 206


>gi|90022366|ref|YP_528193.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Saccharophagus degradans
           2-40]
 gi|123276498|sp|Q21H48|RLME_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|89951966|gb|ABD81981.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Saccharophagus degradans
           2-40]
          Length = 206

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 130/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS  WL  H ND YV+ +Q +G+R+R++YKL+++N+K ++++S + +VDLG++PG 
Sbjct: 2   SRSKSSGRWLQEHFNDQYVKDSQKDGYRSRASYKLIELNDKDKLIKSGQTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLV 139
           WSQVAA+I G      RVVA DIL M+ + GV F + DF +    E + + +G    DLV
Sbjct: 62  WSQVAAQIVGDGG---RVVASDILPMDSLAGVDFVQGDFTEEAVLEQLLELLGEAKADLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  ++M L E A   A   L IGG F  K FQG   ++++   ++ 
Sbjct: 119 ISDMAPNMSGIADVDQPKSMYLVELALDMAKTTLKIGGSFACKVFQGEGFDELVLACREC 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           FQKV+  KP ASR  S E++++AKG++
Sbjct: 179 FQKVLVRKPSASRPRSREVYIVAKGYK 205


>gi|54295625|ref|YP_128040.1| ribosomal RNA large subunit methyltransferase (cell division
           protein FtsJ) [Legionella pneumophila str. Lens]
 gi|81367654|sp|Q5WT13|RLME_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|53755457|emb|CAH16953.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella pneumophila str. Lens]
 gi|307611667|emb|CBX01358.1| ribosomal RNA large subunit methyltransferase [Legionella
           pneumophila 130b]
          Length = 206

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +D YV++AQ EG+R+R+ YKL +I++K  +++    +VDLG+SPG 
Sbjct: 2   NRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGASPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           W+Q A+        + R+VA+DIL M+ +  V+F   DF + +   E I        DL+
Sbjct: 62  WTQYASEKMK---GSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLL 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   ID  R M L E A  FA +ML  GG+ LVK F G   ++++   +  
Sbjct: 119 LSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARAS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP ASR+ S E +LLAKG+
Sbjct: 179 FEKVVIRKPSASRSRSKETYLLAKGY 204


>gi|294787781|ref|ZP_06753025.1| ribosomal RNA large subunit methyltransferase J [Simonsiella
           muelleri ATCC 29453]
 gi|294484074|gb|EFG31757.1| ribosomal RNA large subunit methyltransferase J [Simonsiella
           muelleri ATCC 29453]
          Length = 195

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 92/198 (46%), Positives = 122/198 (61%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +N H+NDPYVQRAQ +G+RAR+AYKLL+INEK +I++ N  + DLGS+PGSWSQVA ++ 
Sbjct: 1   MNEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKIIKPNTVLADLGSAPGSWSQVAIKLV 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
           G      +V A+DIL ME I GV+F + DF + D        +   P DLV+ DMA    
Sbjct: 61  GKQG---KVFALDILPMEHIDGVQFIQGDFREADVLAQFESLLENRPLDLVICDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +D  R+  LCE A  F+   L  GG FLVK FQG    + L  +++ F  V   KP
Sbjct: 118 GNAVMDQARSYYLCELALDFSQNHLKTGGCFLVKVFQGSGYQEYLTAMRETFTVVQTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR  S E++LL K  R
Sbjct: 178 DASRNRSSEIYLLGKNKR 195


>gi|78485156|ref|YP_391081.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomicrospira crunogena
           XCL-2]
 gi|123555692|sp|Q31HG6|RLME_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|78363442|gb|ABB41407.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomicrospira crunogena
           XCL-2]
          Length = 206

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H +D YV +A+ +GWR+R+ YKL +I+EK Q+      ++DLG++PG W
Sbjct: 3   RSKSSAGWLKEHFDDYYVNKAKQDGWRSRAIYKLQEIDEKDQLFSKGMTVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVL 140
           SQ          +  RV A+DIL +EP  GV F + DF + D ++ +  A+ G   DLV+
Sbjct: 63  SQWTT---HQTGDEGRVFALDILPVEPFAGVTFIQGDFQEDDVYQSLLDALDGREVDLVM 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G++ +D  R M L E     A ++L   GD L+K FQG   + +L  L++ +
Sbjct: 120 SDMAPNMTGNKGVDIPRAMYLVELCVDLADQVLKPNGDLLMKVFQGEGYDQLLKSLREKY 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           QKV+  KP ASR  S E++LLA+G +
Sbjct: 180 QKVLTRKPKASRPRSKEIYLLARGKK 205


>gi|262274890|ref|ZP_06052701.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
 gi|262221453|gb|EEY72767.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
          Length = 209

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 115/200 (57%), Gaps = 4/200 (2%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            WL  H +D YVQ AQ +G+R+R+ +KL +I  K ++L+    +VDLG++PG WSQ AA 
Sbjct: 12  RWLKEHFDDKYVQEAQKKGFRSRAIFKLEEIQGKDKLLKPGMTVVDLGAAPGGWSQYAAE 71

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYP 146
             G   ++ +V+A DIL M+ + GV F + DF +      +   I  +  D+V+SDMA  
Sbjct: 72  QVG---DSGQVIACDILPMDSLPGVAFLQGDFREEAVLNALLDRIQPDMVDVVMSDMAPN 128

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G+   D  R M L E A     E+L   G F+VK FQG   +  L  ++K F+ V   
Sbjct: 129 MSGNLVSDQARAMYLVELALDMCREVLAPNGSFIVKVFQGEGFDQYLAEVRKMFKAVKIR 188

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SRA S E++++A G++
Sbjct: 189 KPDSSRARSREVYIVATGYK 208


>gi|254294177|ref|YP_003060200.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
           49814]
 gi|254042708|gb|ACT59503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
           49814]
          Length = 251

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 92/203 (45%), Positives = 135/203 (66%), Gaps = 4/203 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SSR W+ R +NDPYV+RA   GWRAR+AYKLL+++EK  +L++ +R+VDLG +PGSW+QV
Sbjct: 49  SSRAWIERQLNDPYVRRAHEAGWRARAAYKLLELDEKFGLLKNTQRVVDLGCAPGSWTQV 108

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             +  G++     VV ID+L ++PI G    + D  D ++   +   + G P LVLSDMA
Sbjct: 109 LMQKYGAHY----VVGIDLLPVDPIAGAHLIEGDVNDPEAMAEMMSVLQGKPTLVLSDMA 164

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T GH++ DH+RT+ L E A  FA++ L +GG+F  K FQGG   ++  L+  +F +V 
Sbjct: 165 AATTGHKQTDHVRTVQLAEMAVQFAIDNLEVGGNFCTKVFQGGAQGELKALMDANFAEVK 224

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
           + KP +SRA S EMF +A GF++
Sbjct: 225 YWKPPSSRAGSPEMFAVALGFKQ 247


>gi|325578452|ref|ZP_08148587.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160188|gb|EGC72317.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 210

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      RV+A DILDM  I+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILDMNSIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLAKKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G+R
Sbjct: 178 IRSLFSIVKVRKPEASRGRSREVYIVASGYR 208


>gi|160872297|ref|ZP_02062429.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
           grylli]
 gi|159121096|gb|EDP46434.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
           grylli]
          Length = 209

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           + SS+ WLN H  DPYV+RA+ EG+R+RSAYKLL+I EK ++++    IVDLG++PG WS
Sbjct: 5   KSSSQRWLNEHFKDPYVKRAKKEGFRSRSAYKLLEIQEKTKLIKPGMVIVDLGAAPGGWS 64

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLS 141
           Q+A+R+ G      +V A+DIL ME +  V+F + DF +    + + Q I   P DLV+S
Sbjct: 65  QIASRLVG---TTGKVYALDILPMETLTPVEFLQGDFREESVIKQLLQRIQSKPIDLVIS 121

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G R +D  R + L E A  FA ++L   G F+VK FQG      L  L+  F 
Sbjct: 122 DMAPNFSGIRSVDQPRAIFLAELALDFAKKVLKPKGYFVVKAFQGKGFEAFLKELRSLFA 181

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP ASR  S E++L+A G+
Sbjct: 182 NVTIRKPSASRGRSTEVYLVAIGY 205


>gi|145632764|ref|ZP_01788497.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 3655]
 gi|144986420|gb|EDJ92986.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 3655]
          Length = 211

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 4/212 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           ++  F  V   KP ASR  S E++++A G+++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYKE 209


>gi|241763937|ref|ZP_04761979.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
           2AN]
 gi|241366760|gb|EER61201.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
           2AN]
          Length = 220

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 7/217 (3%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK +S + + + WLN H+ND YV+ AQ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KVKTQSKKVN-KAWLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGFTVVDLG 60

Query: 76  SSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           S+PG+WSQ   R        +   N  ++A+DIL MEP+ GV F   DF + +    + +
Sbjct: 61  STPGAWSQYVRRRLSPAGAAAGQLNGAIIALDILPMEPVEGVTFLHGDFREPEVLARLEE 120

Query: 131 AIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G   D+V+SDMA    G    D  R   L E A  FA   L   G  +VK F G   
Sbjct: 121 ALQGRTVDVVVSDMAPNLSGIESADAARIAHLVELAVDFACHHLKPEGALVVKLFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +++ L K+ F+ V  +KP ASR +S E FL+  G +
Sbjct: 181 GELVALFKRTFKTVKPLKPKASRDKSSETFLVGIGLK 217


>gi|224809482|ref|NP_001007385.2| FtsJ homolog 1 [Danio rerio]
          Length = 323

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           ++   D Y + A+ EGWRARSA+KLLQ++E+ ++ +   R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLR 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPT 147
               +   ++VA+D+  M P+ GV   + D   + + E  IR   G + DLV+ D A   
Sbjct: 65  GKDKSEEVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG+F+ K F+G     +   LK  F  V   K
Sbjct: 125 TGLHDVDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++ + +
Sbjct: 185 PPSSRNSSIEAFVVCQNY 202


>gi|157423575|gb|AAI53565.1| FtsJ homolog 1 (E. coli) [Danio rerio]
          Length = 323

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           ++   D Y + A+ EGWRARSA+KLLQ++E+ ++ +   R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLR 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPT 147
               +   ++VA+D+  M P+ GV   + D   + + E  IR   G + DLV+ D A   
Sbjct: 65  GKDKSEEVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG+F+ K F+G     +   LK  F  V   K
Sbjct: 125 TGLHDVDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++ + +
Sbjct: 185 PPSSRNSSIEAFVVCQNY 202


>gi|307824614|ref|ZP_07654838.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacter
           tundripaludum SV96]
 gi|307734268|gb|EFO05121.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacter
           tundripaludum SV96]
          Length = 205

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS  W+  H  D YV+ AQ +G+R+R+ +KL +I +K Q+++    I+DLG++PG 
Sbjct: 2   GRSKSSSRWMQEHFEDEYVKMAQAQGYRSRAVFKLKEIQDKDQLIKPGMNIIDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ A +I G      +++A+DIL M+P+ GV F + DF +    + +   + G P +LV
Sbjct: 62  WSQFARQIVGKK---DKIIALDILAMDPLEGVDFIQGDFREQAVLDQLYAVLDGAPINLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++ +D  R++ L E A   A  +L   G FLVK F G    D    +++ 
Sbjct: 119 MSDMAPNMSGNKGVDQPRSIYLGELALETAKTVLAKDGVFLVKLFHGAGFEDFHKEVQQS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP ASR  S E+++LAKGF+
Sbjct: 179 FTKVIIRKPKASRPRSNEVYILAKGFK 205


>gi|82701616|ref|YP_411182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosospira multiformis
           ATCC 25196]
 gi|123545045|sp|Q2YBT1|RLME_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|82409681|gb|ABB73790.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 206

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+  H+ND +V++A+ EG+R+R+AYKL++I E+  + +    +VDLG++PG 
Sbjct: 2   KRTKTSKAWMKEHVNDFFVRQAKKEGYRSRAAYKLMEIAERDHLFKPGMTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVAA          R VA+DIL+M PI GV F + DF +      +++ +   P DLV
Sbjct: 62  WSQVAAEKLKGKG---RAVALDILEMAPISGVTFIQGDFREASVLAELKEQLKDLPVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + DM+    G R ID  R M L E A  F  E LN GG+FLVK FQG   ++    ++  
Sbjct: 119 ICDMSPNITGIRVIDQTRGMHLAELALEFCTEQLNSGGNFLVKVFQGSGFDEFFRAMRAT 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F +V+  KP+ASR  S E++LL  G R
Sbjct: 179 FHRVVTRKPLASRGRSSEIYLLGLGKR 205


>gi|149375763|ref|ZP_01893531.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
           DG893]
 gi|149359888|gb|EDM48344.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
           DG893]
          Length = 206

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 121/206 (58%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S  WL  H +D +V++++ +G+R+R++YKL++++ K ++ +  + +VDLG++PG W
Sbjct: 3   RSKTSDRWLKEHFDDVWVKKSREDGYRSRASYKLIELDNKDRLFRPGQTVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVL 140
           SQVA    G N     VVA DIL+M PI GV F + DF +    + +   +G    D+V+
Sbjct: 63  SQVAIERVGDNGV---VVASDILEMSPIAGVAFVQGDFTEQSVLDELLDLLGDRRADVVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D    M L E A   A ++L  GG F+ K FQG   + +L  ++K F
Sbjct: 120 SDMAPNMSGMAAVDIPNAMGLVELALDMAQQVLKPGGVFVAKVFQGEGFDALLAEMRKSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V+  KP +SRA S E++ + KGF+
Sbjct: 180 GTVVSRKPDSSRARSREIYQVCKGFK 205


>gi|55250314|gb|AAH85449.1| FtsJ homolog 1 (E. coli) [Danio rerio]
 gi|182890610|gb|AAI64849.1| Ftsj1 protein [Danio rerio]
          Length = 323

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           ++   D Y + A+ EGWRARSA+KLLQ++E+ ++ +   R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDEEFKLFRGVSRAVDLCAAPGSWSQVLSRKLR 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMAYPT 147
               +   ++VA+D+  M P+ GV   + D   + + E  IR   G + DLV+ D A   
Sbjct: 65  GKDKSEEVKIVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG+F+ K F+G     +   LK  F  V   K
Sbjct: 125 TGLHDVDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQLKIFFSFVTCAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++ + +
Sbjct: 185 PPSSRNSSIEAFVVCQNY 202


>gi|254491856|ref|ZP_05105035.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
           thiooxidans DMS010]
 gi|224463334|gb|EEF79604.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
           thiooxydans DMS010]
          Length = 205

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL  H +D YV++AQ EG R+R+ +KL +I++K ++L+    +VDLG++PG W
Sbjct: 3   KSKSSQGWLKEHFDDQYVKKAQKEGHRSRATFKLDEIDQKDKLLRPGMSVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVL 140
           S  A R  G +     VVA+DIL M P+ GV F + DF + +  + + + + G   DLVL
Sbjct: 63  SDYAFRKVGDSGT---VVALDILPMTPLTGVHFIEGDFREDEVLDELNKVLNGREIDLVL 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID   +M L E A  FA+  L+  G FLVK FQG   +  L  ++  F
Sbjct: 120 SDMAPNMSGVGSIDQPASMYLVELALDFAVNNLSKQGCFLVKVFQGEGFDAYLKQMRDSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV+  KP ASRA S E++LL KG +
Sbjct: 180 NKVVTRKPGASRARSREVYLLGKGLK 205


>gi|239815604|ref|YP_002944514.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
           S110]
 gi|259494572|sp|C5CKU4|RLME_VARPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|239802181|gb|ACS19248.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
           S110]
          Length = 222

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           ++ K K++     ++ WL+ HINDPYV+ A  EG+RAR+AYKL +I+E   +++  + +V
Sbjct: 1   MSTKAKSKKV---NKAWLHDHINDPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVV 57

Query: 73  DLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLGS+PG+WSQ   R            N  ++A+DIL MEPI GV F + DF + +  E 
Sbjct: 58  DLGSTPGAWSQYLRRRMSPEGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQ 117

Query: 128 IRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   L E A  FA   L   G  + K F G
Sbjct: 118 VLGVLAGRKADLVVSDMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              ++++ L K +F+ V   KP ASR +S E FL+  G +
Sbjct: 178 SGYDELVKLFKANFRTVKPFKPKASRDKSSETFLVGMGLK 217


>gi|332307115|ref|YP_004434966.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174444|gb|AEE23698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 209

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +       SS+ WL  H +D YV +A+ +G R+R+ +KL +I  K  +++    +VDLG+
Sbjct: 1   MGKNKQSESSKRWLKEHFDDKYVIQAKKQGLRSRAVFKLEEIQAKDSLIKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ A +  G + +   V+A DIL M+P+LGV F   DF +    + +   IGG  
Sbjct: 61  APGGWSQYAVKQVGESGH---VIACDILAMDPLLGVDFLMGDFREEAVLDTLLNKIGGKN 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+   D  ++M L E +     ++L   G + VK F G   +     
Sbjct: 118 VDVVMSDMAPNMTGNDTADQAKSMYLVELSLDMCRQVLKKNGSYTVKVFMGEGFDQFFHE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K  F+ V   KP +SRA S E++L+A GF+
Sbjct: 178 VKSAFKVVKTRKPDSSRARSREVYLVATGFK 208


>gi|91788714|ref|YP_549666.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas sp. JS666]
 gi|123059751|sp|Q129M4|RLME_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91697939|gb|ABE44768.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas sp. JS666]
          Length = 247

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           + KV  R  + + + WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E   +++    +VD
Sbjct: 16  SPKVSARGKKVN-KAWLHDHINDPYVKLAQKEGYRARAAYKLKEIDETLGLIKPGDCVVD 74

Query: 74  LGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           LGS+PG+WSQ   R            N R++ +D+L MEPI GV F + DF + +  + +
Sbjct: 75  LGSTPGAWSQYVRRKLSPTGAAAGELNGRIIGLDMLPMEPIEGVAFIQGDFREPEVLQKL 134

Query: 129 RQAIGG-----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            QA+         DLV+SDMA    G    D  R + L E A  FA   +   G  +VK 
Sbjct: 135 EQALATDKGQVKVDLVISDMAPNLSGIESADAARIVHLVELAVEFAQNRMKPDGTLVVKL 194

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F G   ++++ L +  F+ V  +KP ASR+ S E FL+ KG +K
Sbjct: 195 FHGSGYDELVKLFRATFKVVKPMKPKASRSNSSETFLVGKGLKK 238


>gi|291407431|ref|XP_002719910.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
          Length = 331

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGQVVAVDLQAMAPLPGVTQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|294086049|ref|YP_003552809.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665624|gb|ADE40725.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 268

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/227 (44%), Positives = 140/227 (61%), Gaps = 4/227 (1%)

Query: 3   KPPGSSSRRGLT----QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           K P   S R  T    Q  K R  + SS+ WL R +NDPYV  A+  G+R+R+A KL QI
Sbjct: 13  KGPSGRSYRNATGLTRQPKKMRGRKVSSQRWLTRQLNDPYVAEAKSRGYRSRAAIKLEQI 72

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           ++++Q+L+    I+DLG +PG W QVA+  T    +  ++V +D+LD E I+    F  D
Sbjct: 73  DDRYQLLKPGMAIIDLGCAPGGWLQVASIRTKLGISKAKLVGVDLLDTEHIVDADIFVGD 132

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
             D      +++A+GG  D V+SDMA  T GHR  DHLRT +L E A  FAL++L   G 
Sbjct: 133 MTDDAMMTQMQEAVGGAADGVMSDMAADTTGHRATDHLRTTALLETALDFALDVLRKDGF 192

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           FL K F+GG    +L L++++F+ V HVKP ASR+ESVE ++LA GF
Sbjct: 193 FLAKCFRGGAERSVLDLMRQNFKTVRHVKPTASRSESVESYVLATGF 239


>gi|221639177|ref|YP_002525439.1| Ribosomal RNA large subunit methyltransferase J [Rhodobacter
           sphaeroides KD131]
 gi|221159958|gb|ACM00938.1| Ribosomal RNA large subunit methyltransferase J [Rhodobacter
           sphaeroides KD131]
          Length = 229

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/217 (44%), Positives = 138/217 (63%), Gaps = 6/217 (2%)

Query: 16  KVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +VK  +  + SS  WL R +NDPYV RA+ EG+R R+AYK+L++++K   L+   R+VDL
Sbjct: 2   RVKTAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDL 61

Query: 75  GSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           G +PG W QVA           N     V+ +D+ ++EPI G +  + DFL  D+ E ++
Sbjct: 62  GCAPGGWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEIHQLDFLSDDADEKVK 121

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
             +GG  D+V+SDMA    GH+  DHLR ++LCEAA  FA ++L  GG F+ K   GG  
Sbjct: 122 GWLGGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAE 181

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 182 NELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 218


>gi|148826009|ref|YP_001290762.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae PittEE]
 gi|148716169|gb|ABQ98379.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae PittEE]
          Length = 239

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            ++   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++P
Sbjct: 33  RKNVTASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAAP 92

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WSQ      G      RV+A DIL+M+PI+GV F + DF D +    + + +G    D
Sbjct: 93  GGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEAKVD 149

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 150 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLREIR 209

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 210 SLFNVVKVRKPEASRGRSREVYIVATGYK 238


>gi|145630774|ref|ZP_01786552.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae R3021]
 gi|144983656|gb|EDJ91116.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae R3021]
          Length = 209

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|145636180|ref|ZP_01791850.1| cell division protein [Haemophilus influenzae PittHH]
 gi|145270702|gb|EDK10635.1| cell division protein [Haemophilus influenzae PittHH]
          Length = 239

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 115/209 (55%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            ++   SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++P
Sbjct: 33  RKNVTASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAAP 92

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPD 137
           G WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G    D
Sbjct: 93  GGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLACVGEDKVD 149

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  ++
Sbjct: 150 VVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLREIR 209

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP ASR  S E++++A G++
Sbjct: 210 SLFNVVKVRKPEASRGRSREVYIVATGYK 238


>gi|225025120|ref|ZP_03714312.1| hypothetical protein EIKCOROL_02012 [Eikenella corrodens ATCC
           23834]
 gi|224942081|gb|EEG23290.1| hypothetical protein EIKCOROL_02012 [Eikenella corrodens ATCC
           23834]
          Length = 207

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WLN H+NDPYV +AQ +G+RAR+AYKLL+INEK +++++   + DLGS+PGS
Sbjct: 4   TRSKSSKSWLNEHVNDPYVHQAQKDGYRARAAYKLLEINEKDKLIKNGTVLADLGSAPGS 63

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVA ++ G+     RV A+DIL MEPI GV F + DF + +  E +   + G   DLV
Sbjct: 64  WSQVAVKLAGAQG---RVFALDILPMEPIAGVSFIQGDFRENEVLEELENLLEGRALDLV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D+A    G+   D  R+  LCE A  FA E L  GG+ LVK FQG    + +  ++  
Sbjct: 121 ICDIAPNMSGNAVTDQARSYVLCELALDFAAEHLKTGGNMLVKVFQGAGFQEYMQAMRGV 180

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F +V   KP ASR+ S E++LL +  R
Sbjct: 181 FAQVQVRKPKASRSRSSEVYLLGRNKR 207


>gi|319897097|ref|YP_004135292.1| 23S rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|317432601|emb|CBY80962.1| 23S rRNA methyltransferase [Haemophilus influenzae F3031]
          Length = 209

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLACVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|68250003|ref|YP_249115.1| 23S rRNA methyltransferase J [Haemophilus influenzae 86-028NP]
 gi|229847493|ref|ZP_04467590.1| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1]
 gi|81335573|sp|Q4QKJ2|RLME_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|68058202|gb|AAX88455.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 86-028NP]
 gi|229809634|gb|EEP45361.1| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1]
          Length = 209

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|262401666|ref|ZP_06078232.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC586]
 gi|262352083|gb|EEZ01213.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC586]
          Length = 209

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G   ++ RV+A D+L ME I GV F + DF +      + + I    
Sbjct: 61  APGGWSQFAAKVVG---DSGRVIACDLLPMESIAGVSFLQGDFREEAVLNALLERIQPEM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 178 VRDLFKAVKIRKPDSSRSRSREVFIVATGYK 208


>gi|309973146|gb|ADO96347.1| 23S rRNA U2552 ribose 2-O-methyltransferase, SAM-dependent
           [Haemophilus influenzae R2846]
          Length = 209

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLATKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|126328301|ref|XP_001374289.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 310

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 1/196 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KLLQ++E+ Q+    RR VDL ++PGSWSQV +R  G
Sbjct: 5   SKDKRDVYYRLAKEEGWRARSAFKLLQLDEEFQLFSGVRRAVDLCAAPGSWSQVLSRKLG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIG 149
            + +   +VA+D+  M P+ GV   + D     +  E I    G   DLV+ D A    G
Sbjct: 65  EDESPACIVAVDLQAMAPLPGVVQIQGDITKASTAQEIIGHFEGQPADLVVCDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  AA   A+ +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 125 LHDIDEYIQAQLLLAALNIAIHVLKPGGSFVAKIFRGRDVTLLYSQLRIFFPDVVCAKPR 184

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +GF
Sbjct: 185 SSRNSSIEAFAVCRGF 200


>gi|254448851|ref|ZP_05062307.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium HTCC5015]
 gi|198261541|gb|EDY85830.1| ribosomal RNA large subunit methyltransferase J [gamma
           proteobacterium HTCC5015]
          Length = 206

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL  H +D YV RAQ EG+R+R+ YKL +I++K ++  S +R++DLG++PG W
Sbjct: 3   RSKSSQRWLKEHFDDIYVARAQQEGFRSRAVYKLQEIDQKAKLFHSGQRVIDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           SQ  A   G       VVA DIL+MEPI  V F   DF +      I    GG P DLV+
Sbjct: 63  SQYVADAVGDKGT---VVASDILEMEPIPNVDFVCGDFREEVVLNKILDQFGGEPADLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID  R M L E A   A + L  GG F+ K FQG  ++  +  LK  F
Sbjct: 120 SDMAPNMSGMDAIDQPRAMYLVELALDLARQTLRPGGGFVCKLFQGEGSDVFIAELKSSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP ASR  S E++   KGF+
Sbjct: 180 NSVAVRKPKASRPRSREVYAQCKGFK 205


>gi|145641635|ref|ZP_01797212.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae R3021]
 gi|145273682|gb|EDK13551.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae 22.4-21]
          Length = 209

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    + + +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLERVGEAK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D    M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPCAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|293350731|ref|XP_001062916.2| PREDICTED: Ftsj homolog 1 (E. coli)-like [Rattus norvegicus]
 gi|293362770|ref|XP_343772.4| PREDICTED: Ftsj homolog [Rattus norvegicus]
          Length = 324

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
              ++ +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  -GQSSGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|145629419|ref|ZP_01785217.1| cell division protein [Haemophilus influenzae 22.1-21]
 gi|145634955|ref|ZP_01790662.1| cell division protein [Haemophilus influenzae PittAA]
 gi|144978262|gb|EDJ88026.1| cell division protein [Haemophilus influenzae 22.1-21]
 gi|145267821|gb|EDK07818.1| cell division protein [Haemophilus influenzae PittAA]
 gi|309750887|gb|ADO80871.1| 23S rRNA U2552 ribose 2-O-methyltransferase, SAM-dependent
           [Haemophilus influenzae R2866]
          Length = 209

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLANKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|116754447|ref|YP_843565.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosaeta thermophila
           PT]
 gi|121694084|sp|A0B8A1|RLME_METTP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|116665898|gb|ABK14925.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanosaeta thermophila
           PT]
          Length = 255

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 5/194 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y ++A+ EG+RARSAYKL QIN+K  I++   R+VDLG++PG W QVA  ++
Sbjct: 1   MARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVARELS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           G       VV +D+  +EP+ G+   + D    ++ E I  A+GG  D+V+SD A    G
Sbjct: 61  G-----GIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAALGGQADVVISDAAPNLSG 115

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +DH R++ L  AA   A  +L  GG FLVK FQG   ND L  +K+ F  V    P 
Sbjct: 116 IWDVDHARSIDLSRAALRIAKRLLRPGGSFLVKVFQGDMFNDYLEEVKREFSSVHAYTPP 175

Query: 210 ASRAESVEMFLLAK 223
           ASR ES E++++ K
Sbjct: 176 ASRKESAEIYVIGK 189


>gi|307546735|ref|YP_003899214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas elongata DSM
           2581]
 gi|307218759|emb|CBV44029.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas elongata DSM
           2581]
          Length = 225

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 4/227 (1%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           M     S  +    +    R  +     W+  H +D YVQ++  +G+R+R++YKLL ++E
Sbjct: 1   MASSHDSRPKDARAKGAARRGGKKPRTGWMKEHFDDRYVQQSWQDGYRSRASYKLLALDE 60

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K ++L+    ++DLG++PG WSQVAA   G   +  RV+A DIL+M+ + GV F + DF 
Sbjct: 61  KDRLLRPGMTVIDLGAAPGGWSQVAAEKVG---DEGRVIASDILEMDALAGVDFVQGDFT 117

Query: 121 DLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +    E I   IG  P DLV+SDMA    G   ID  + M L E A   A + L+ GG F
Sbjct: 118 EDSVLEEILARIGDRPVDLVMSDMAPNMSGMAAIDQPQAMYLVELALDLARQTLSPGGVF 177

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K FQG   +  L  L+  F++V+  KP ASRA S E++LLA+GFR
Sbjct: 178 LAKVFQGEGFDAYLKELRAGFKRVVTRKPEASRARSREVYLLAEGFR 224


>gi|190345428|gb|EDK37311.2| hypothetical protein PGUG_01409 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 293

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           ++   D Y +RA+ EGWRARSA+KLLQ++E+  +    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRRAKEEGWRARSAFKLLQLDEEFGLFSGVKRVVDLCAAPGSWSQVLSREIY 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
             S   + ++VA+D+  M PI GV   + D     + + I    GG P D V SD A   
Sbjct: 65  KNSKGEDAKIVAVDLQPMTPIDGVITLQADITHPKTLQRILDIFGGEPADFVCSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L   A      +L  GG F+ K F+G   + +   L   F++V+  K
Sbjct: 125 TGLHDLDEYIQAQLVLCALQLTTCVLKEGGTFVAKIFRGRDIDLLYSQLGHLFERVVCAK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR  S+E F++  G++
Sbjct: 185 PRASRGTSLEAFIVCIGYK 203


>gi|270158120|ref|ZP_06186777.1| putative ribosomal RNA large subunit methyltransferase J
           [Legionella longbeachae D-4968]
 gi|289163615|ref|YP_003453753.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella longbeachae NSW150]
 gi|269990145|gb|EEZ96399.1| putative ribosomal RNA large subunit methyltransferase J
           [Legionella longbeachae D-4968]
 gi|288856788|emb|CBJ10599.1| Ribosomal RNA large subunit methyltransferase (Cell division
           protein FtsJ) [Legionella longbeachae NSW150]
          Length = 206

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 120/206 (58%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ WL  H +D YV++AQ EG+R+R+ YKL ++++K  +L+    +VDLG++PG 
Sbjct: 2   KRTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEVDDKESLLKPGMTVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           W+Q  +          R++A+DIL M+ +  V F   DF + +  + +   I     DL+
Sbjct: 62  WTQYVSEQLK---GCGRIIALDILPMDALPDVDFILGDFREEEVLQKLINLIPERSVDLL 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G + ID  R M L E A  FA +ML  GG  L+K F G   +D++   +  
Sbjct: 119 LSDMAPNMSGSKAIDIPRAMYLVELAFDFAEKMLKPGGAMLIKVFHGSGFDDLVKQARIS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV+  KP+ASRA S E +LLAKG+
Sbjct: 179 FEKVVIRKPMASRARSKETYLLAKGY 204


>gi|260582443|ref|ZP_05850234.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae NT127]
 gi|260094423|gb|EEW78320.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae NT127]
 gi|301170080|emb|CBW29684.1| 23S rRNA methyltransferase [Haemophilus influenzae 10810]
          Length = 209

 Score =  245 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|303256870|ref|ZP_07342884.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
           bacterium 1_1_47]
 gi|330998881|ref|ZP_08322608.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
           excrementihominis YIT 11859]
 gi|302860361|gb|EFL83438.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
           bacterium 1_1_47]
 gi|329576095|gb|EGG57614.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
           excrementihominis YIT 11859]
          Length = 214

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 122/205 (59%), Gaps = 3/205 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S+  W+ RH+ DP+V+++  EG+RARS YKL++I++K +I++    +VDLG++PGSW+Q+
Sbjct: 10  SNPAWIKRHLTDPFVKKSVQEGYRARSVYKLMEIDDKDKIIKPGMSVVDLGAAPGSWTQI 69

Query: 85  AARI--TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLS 141
                       + +V+A+DIL MEPI GV F + DF + +  + +   + G   D+VLS
Sbjct: 70  VKERLTDKDGKIDGKVIAMDILPMEPIEGVHFLQGDFREQEVADKLTDLLEGEKVDVVLS 129

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R + L E A  FA E L   G F+ K FQG   +  +   KK F+
Sbjct: 130 DMAPNLSGVAAADAARCLLLNELALDFAKENLKKNGSFVCKVFQGSGYSQYVEACKKTFR 189

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           KV   KP ASR+ S E++++A+  +
Sbjct: 190 KVSVRKPEASRSSSAEVYIVARDLK 214


>gi|16273244|ref|NP_439485.1| 23S rRNA methyltransferase J [Haemophilus influenzae Rd KW20]
 gi|260581320|ref|ZP_05849136.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae RdAW]
 gi|1169755|sp|P45162|RLME_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=Cell division protein ftsJ homolog;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|1574792|gb|AAC22978.1| cell division protein (ftsJ) [Haemophilus influenzae Rd KW20]
 gi|260091987|gb|EEW75934.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           influenzae RdAW]
          Length = 209

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFDVVKVRKPEASRGRSREVYIVATGYK 208


>gi|160900358|ref|YP_001565940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
           SPH-1]
 gi|226703294|sp|A9BML0|RLME_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160365942|gb|ABX37555.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
           SPH-1]
          Length = 217

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 6/214 (2%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ WLN H+NDPYV+ AQ +G+RAR+AYKL +I+E+ ++++    +VDLGS+P
Sbjct: 4   NTKSKKVNKAWLNSHVNDPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTP 63

Query: 79  GSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQ   R            N R++++D+L MEPI GV+F   DF +      +++A+G
Sbjct: 64  GAWSQYVRRCLSPEGAAVGALNGRIISLDLLPMEPIEGVQFILGDFREEPVLAQLQEALG 123

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   D+V+SDMA    G+   D  R   L E A  F++  +   G  +VK F GG  +D+
Sbjct: 124 GGKADVVVSDMAPNLSGNGTTDAARIALLVELAVDFSIHHMKPEGALVVKLFHGGAYDDL 183

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + L ++ F+ V  +KP +SR +S E FL+  G +
Sbjct: 184 VALFRQTFKVVKPIKPKSSRDKSSETFLVGMGLK 217


>gi|62857467|ref|NP_001016817.1| FtsJ homolog 1 [Xenopus (Silurana) tropicalis]
 gi|89273969|emb|CAJ81745.1| FtsJ homolog 1 (E. coli) [Xenopus (Silurana) tropicalis]
          Length = 335

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KLLQ++E++++ Q  +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDEEYRLFQGVQRAVDLCAAPGSWSQVLSRKLR 64

Query: 89  -TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
            +   +   ++VA+D+  M P+ GV   + D   + +  E IR   G   DLV+ D A  
Sbjct: 65  GSEEQSGQVKIVAVDLQAMAPLPGVIQIQGDITKVSTAHEIIRHFEGQPADLVVCDGAPD 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   L+  F++V   
Sbjct: 125 VTGLHDIDEYIQAQLLLAALNITTHVLRDGGTFVAKIFRGKDVTLLYSQLQIFFREVTCA 184

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ +G+R
Sbjct: 185 KPRSSRNSSIEAFVVCQGYR 204


>gi|72110328|ref|XP_787303.1| PREDICTED: similar to cell division protein ftsj
           [Strongylocentrotus purpuratus]
 gi|115931468|ref|XP_001187092.1| PREDICTED: similar to cell division protein ftsj
           [Strongylocentrotus purpuratus]
          Length = 243

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 136/236 (57%), Gaps = 9/236 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKN--RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M  P  S    G+ +K K   ++   SS+ W+NRH+NDP+V++A+ + +RARSAYKLL+I
Sbjct: 1   MFSPTRSLHLSGVLRKKKPGLKNKSHSSQQWINRHVNDPFVKQARADSYRARSAYKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAAR-----ITGSNANNTRVVAIDILDMEPILGVK 113
           + ++++L+    ++D G++PGSW+QVA       +         V+A+D+L M+PI G  
Sbjct: 61  DSRYRLLKPGNTVIDCGAAPGSWTQVAVERTNSALQNPAKPRGIVIAVDLLHMQPIEGAI 120

Query: 114 FF-KFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
              + DF D    E I   +     D VLSDMA    G   +DH + ++L   A  FA +
Sbjct: 121 MLGQSDFTDPAVQERILGHLDKRLSDAVLSDMAPNATGIHAMDHEQIIALARTAMGFATK 180

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +L   G FLVK + G  T  +   L + F+ V  ++P ASR ES E+FLLA+GF++
Sbjct: 181 VLCENGHFLVKLWDGHDTGLLKRDLVESFRSVKILRPEASRKESSEIFLLAQGFKR 236


>gi|319942668|ref|ZP_08016975.1| ribosomal RNA large subunit methyltransferase E [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803751|gb|EFW00686.1| ribosomal RNA large subunit methyltransferase E [Sutterella
           wadsworthensis 3_1_45B]
          Length = 217

 Score =  244 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 3/205 (1%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S+R W+ RHINDP+V+R++ EG+RARS YKL++++EK  +L+    +VDLGS+PGSW+QV
Sbjct: 10  SNRAWIERHINDPFVKRSRAEGYRARSVYKLIELDEKEHLLKPGSTVVDLGSAPGSWTQV 69

Query: 85  AARI--TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLS 141
                     +   R++A+DIL M+PI  V F + DF + +  + + + + G   D+VLS
Sbjct: 70  VRERLAGPDGSVRGRIIAMDILPMDPIDDVYFLQGDFREQEVADKLAEILNGDKVDVVLS 129

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R++ L E A  F LE L   G F+ K FQG   +  +  LK+ F+
Sbjct: 130 DMAPNLSGIAAADAARSLLLNELALEFCLEHLAPNGVFVTKAFQGSGYSQYVESLKRVFK 189

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           KV   KP ASR  S E++L+++G +
Sbjct: 190 KVAAKKPEASRDTSAEVYLVSRGLK 214


>gi|241953819|ref|XP_002419631.1| 2'-O-ribose tRNA anticodon loop methyltransferase, putative; tRNA
           (uridine-2'-O-)-methyltransferase, putative [Candida
           dubliniensis CD36]
 gi|223642971|emb|CAX43227.1| 2'-O-ribose tRNA anticodon loop methyltransferase, putative
           [Candida dubliniensis CD36]
          Length = 293

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           N+   D Y +RA+ EGWRARSA+KLLQ+NE+  + +   R+VDL ++PGSWSQV ++  G
Sbjct: 5   NKDKRDLYYRRAKEEGWRARSAFKLLQLNEEFDLFEGITRVVDLCAAPGSWSQVLSQKLG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
            N+    +VA+D+  M PI GV   + D     + + IR   GG P D V SD A    G
Sbjct: 65  PNST---IVAVDLQPMTPIDGVTTIQADITHPKTLQRIRDCFGGEPADFVCSDGAPDVTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  +A      +L  GG F+ K F+G   + +   L   F KVI  KP 
Sbjct: 122 LHDLDEYIQSQLILSALQLTTCLLKPGGSFVAKIFRGRDIDLLYSQLSYLFDKVICAKPR 181

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++  G++
Sbjct: 182 SSRGTSLEAFIVCLGYK 198


>gi|253999580|ref|YP_003051643.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. SIP3-4]
 gi|253986259|gb|ACT51116.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. SIP3-4]
          Length = 207

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+  H+ND +V+RAQ +G+RAR+AYKL++I++K Q+++    IVDLG++PGS
Sbjct: 2   KRTRTSKGWMQEHVNDEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVA +         R++A+D+L+M  I GV F + DF +      + + +   P DLV
Sbjct: 62  WSQVAVQRLK---GQGRIIALDLLEMAAIPGVDFIQGDFREDAVLFQLEEKLNNRPIDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           ++DMA    G   +D      L E A  F+L+ L  GG+FLVK F G   ++I+  ++  
Sbjct: 119 IADMAPNISGISSVDQANAAYLTELALEFSLKWLKPGGNFLVKVFIGSGFDEIMKTMRLG 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV+  KP ASR  S E++LL    +
Sbjct: 179 FDKVVTRKPKASRDRSSEVYLLGLKRK 205


>gi|229844055|ref|ZP_04464196.1| 23S rRNA methyltransferase J [Haemophilus influenzae 6P18H1]
 gi|229813049|gb|EEP48737.1| 23S rRNA methyltransferase J [Haemophilus influenzae 6P18H1]
          Length = 209

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMSVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M+PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMDPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F  V   KP ASR  S E++++A G++
Sbjct: 178 IRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|261212253|ref|ZP_05926539.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC341]
 gi|260838861|gb|EEX65512.1| cell division protein FtsJ/ribosomal RNA large subunit
           methyltransferase J [Vibrio sp. RC341]
          Length = 209

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G   ++ RV+A D+L ME I GV F + DF +      + + I    
Sbjct: 61  APGGWSQFAAKVVG---DSGRVIACDLLPMESIAGVSFLQGDFREEAVLNALLERIQPEM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAQNGSFVVKVFQGEGFDDYVKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 178 VRDLFKVVKIRKPDSSRSRSREVFIVATGYK 208


>gi|291413158|ref|XP_002722848.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
          Length = 333

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PG WSQV ++ TG
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGGWSQVLSQKTG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
                 +V+A+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  -GQEGGQVLAVDLQAMAPLPGVTQIQGDITQLSTAKEIIQHFQGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|68472105|ref|XP_719848.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|68472340|ref|XP_719731.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|46441562|gb|EAL00858.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|46441688|gb|EAL00983.1| potential tRNA anticodon loop methyltransferase [Candida albicans
           SC5314]
 gi|238881121|gb|EEQ44759.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida albicans WO-1]
          Length = 293

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQ+NE+  + +   R+VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDLYYRRAKEEGWRARSAFKLLQLNEEFNLFKDITRVVDLCAAPGSWSQVLSQKLG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
            ++    +VA+D+  M PI GV   + D     + + IR   GG P D V SD A    G
Sbjct: 65  PDST---IVAVDLQPMTPIDGVTTIQADITHPKTLQRIRDCFGGEPADFVCSDGAPDVTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  +A      +L  GG F+ K F+G   + +   L   F KVI  KP 
Sbjct: 122 LHDLDEYIQSQLILSALQLTTCLLKPGGSFVAKIFRGRDIDLLYSQLSYLFDKVICAKPR 181

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++  G++
Sbjct: 182 SSRGTSLEAFIVCLGYK 198


>gi|89054472|ref|YP_509923.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Jannaschia sp. CCS1]
 gi|122498740|sp|Q28QW4|RLME_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88864021|gb|ABD54898.1| 23S rRNA Um-2552 2'-O-methyltransferase [Jannaschia sp. CCS1]
          Length = 237

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/232 (41%), Positives = 143/232 (61%), Gaps = 6/232 (2%)

Query: 1   MVKPPGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           MVK      +R L  KVK  R  + SS  WL R +NDPYV  A+ +G+R R+AYK++ ++
Sbjct: 1   MVKKTSGRGQRDLKVKVKTARGRKLSSTRWLERQLNDPYVAAARRDGYRGRAAYKIIDLD 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARI-----TGSNANNTRVVAIDILDMEPILGVKF 114
           +K++ L    R+VDLG +PG W QVA +        S     R++ +D+ +MEPI G + 
Sbjct: 61  DKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGEKSGKAVGRIIGLDLQEMEPIAGCEL 120

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            + DF++ D+   ++  +GG  D+V+SDMA    GH++ DH+R M+LCEAA   A ++L 
Sbjct: 121 HQLDFMEDDADLKVKDWLGGRADVVMSDMAASASGHKQTDHMRIMALCEAAAELAFDVLE 180

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K   GG    +  LLK+ F+KV +VKP ASRA+S E F++A GFR
Sbjct: 181 PGGTFVAKVLAGGAEGTLQRLLKQRFKKVANVKPGASRADSSEKFVVATGFR 232


>gi|260944280|ref|XP_002616438.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850087|gb|EEQ39551.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 301

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 107/198 (54%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQINE+  I    RR+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRRAKEEGWRARSAFKLLQINEQFNIFDGVRRVVDLCAAPGSWSQVLSRELN 64

Query: 91  SNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            N +    ++VA+D+  M PI GV   + D     + + I    GG P D V SD A   
Sbjct: 65  KNGDKKEAKIVAVDLQPMAPIDGVTCIQADITHPKTLQKILDLFGGEPADFVCSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A      +L  GG F+ K F+G   + +   L   F++VI  K
Sbjct: 125 TGLHDLDEYIQAQLILSALQLTTCILKPGGTFVAKIFRGRDIDLLYSQLGYLFERVICAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  G+
Sbjct: 185 PRSSRGTSLEAFIVCLGY 202


>gi|148702026|gb|EDL33973.1| Ftsj homolog 1 (E. coli), isoform CRA_b [Mus musculus]
          Length = 344

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 27  SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 86

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 87  GQG-SGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 145

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 146 LHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 205

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 206 SSRNSSIEAFAVCQGY 221


>gi|123229058|emb|CAM17935.1| Ftsj homolog 1 (E. coli) [Mus musculus]
          Length = 308

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|22028410|gb|AAH34880.1| FtsJ homolog 1 (E. coli) [Mus musculus]
 gi|123229060|emb|CAM17937.1| Ftsj homolog 1 (E. coli) [Mus musculus]
          Length = 322

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|46877062|ref|NP_598752.2| Ftsj homolog [Mus musculus]
 gi|26331300|dbj|BAC29380.1| unnamed protein product [Mus musculus]
 gi|123229059|emb|CAM17936.1| Ftsj homolog 1 (E. coli) [Mus musculus]
          Length = 324

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|254572155|ref|XP_002493187.1| 2'-O-ribose methyltransferase, methylates the 2'-O-ribose of
           nucleotides [Pichia pastoris GS115]
 gi|238032985|emb|CAY71008.1| 2'-O-ribose methyltransferase, methylates the 2'-O-ribose of
           nucleotides [Pichia pastoris GS115]
 gi|328352798|emb|CCA39196.1| ribosomal RNA large subunit methyltransferase E [Pichia pastoris
           CBS 7435]
          Length = 311

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 6/202 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y +RA+ EGWRARSA+KLLQ+NE+  + +  RR+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRRAKEEGWRARSAFKLLQLNEQFNLFKDVRRVVDLCAAPGSWSQVLSRELY 64

Query: 88  --ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
              + ++    ++VA+D+  M PI GV   + D     + E I +  GG P D V SD A
Sbjct: 65  EKQSNNSETPAKIVAVDLQPMSPIDGVTTLQADITHPKTLEKILEIFGGEPADFVCSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  +A      +L  GG F+ K F+G   + +   +   F+ V 
Sbjct: 125 PDVTGLHDLDEYIQSQLILSALQLTTCILKPGGSFVAKIFRGKDIDLLYSQMGFLFEHVT 184

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S+E F++ +G+R
Sbjct: 185 CAKPRSSRGTSLESFIVCQGYR 206


>gi|110833182|ref|YP_692041.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
           borkumensis SK2]
 gi|123345833|sp|Q0VSS9|RLME_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110646293|emb|CAL15769.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
           borkumensis SK2]
          Length = 208

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +   S   +S+ WL  H NDP+V +AQ +G+R+R+++KLL++NEK ++ +    ++DLG+
Sbjct: 1   MAKSSRSKTSKAWLKEHFNDPWVAKAQEQGYRSRASFKLLEMNEKDRLFRPGMAVLDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G       V+A DIL M+ +  V F + DF +   +E I  A+G   
Sbjct: 61  APGGWSQVAGQLIGGRGT---VIASDILAMDALPDVTFIEGDFREEVIYEQILMALGDQR 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G+  +D  R M L E A   A  +L   G FLVK FQG    D    
Sbjct: 118 ADLVMSDMAPNMSGNSAVDQPRAMYLAELALDMAERVLEPDGVFLVKVFQGEGFEDYRKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+  F++V+  KP ASRA S E++ L  G +
Sbjct: 178 LQSRFKRVVSRKPAASRARSTEVYQLGFGLK 208


>gi|92115197|ref|YP_575125.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Chromohalobacter
           salexigens DSM 3043]
 gi|122419130|sp|Q1QSY2|RLME_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91798287|gb|ABE60426.1| 23S rRNA Um-2552 2'-O-methyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 210

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H +D YVQR+  +G+R+R++YKLL+++ K  +L+    ++DLG++PG WSQ+AA  
Sbjct: 14  WLKEHFDDRYVQRSWQDGYRSRASYKLLELDAKDALLKPGMTVIDLGAAPGGWSQIAADK 73

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPT 147
            G   +   V+A DIL+M+ + GV F + DF +++  E I  A+ G   DLV+SDMA   
Sbjct: 74  VG---DKGCVIASDILEMDALAGVTFVQGDFTEMEVLEQILVALEGRRVDLVMSDMAPNM 130

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID  + M L E A   A + L+ GG FL K FQG   +  L  L+  F+KV+  K
Sbjct: 131 SGMAAIDQPQAMYLVELALDLARQTLSPGGRFLAKVFQGEGFDAYLKELRGSFRKVVTRK 190

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S E++LLA+GF
Sbjct: 191 PEASRARSREVYLLAEGF 208


>gi|291613528|ref|YP_003523685.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
           lithotrophicus ES-1]
 gi|291583640|gb|ADE11298.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
           lithotrophicus ES-1]
          Length = 206

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 4/205 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+  H+NDPYVQ+AQ +G+R+R+AYKLL+I+E+  +++    +VDLG++PG 
Sbjct: 2   KASKTSKQWMREHVNDPYVQQAQKDGYRSRAAYKLLEIDERDHLIKPGMVVVDLGATPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           W QV A   G+N    R++A+D+L + P+  V+F + DF +      + + + G    LV
Sbjct: 62  WCQVVANRLGANG---RIIALDLLPLNPLPRVEFIQGDFREDSVLAQLEEKLEGRQIGLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    D  R M L E A  FA+E L  GG FLVK FQG    D L L++ +
Sbjct: 119 ISDMAPNISGVSSADQARAMHLAELALDFAVEHLAPGGSFLVKVFQGVGFEDYLKLMRSN 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKG 224
           F KV+  KP ASR  S E +L+  G
Sbjct: 179 FAKVVARKPKASRDRSSEQYLVGLG 203


>gi|261856557|ref|YP_003263840.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
           neapolitanus c2]
 gi|261837026|gb|ACX96793.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
           neapolitanus c2]
          Length = 209

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL  H  D +V RA+ EG+R+R+ YKL+++NE+ + L+  +R+VDLG++PG W
Sbjct: 3   RSNSSQRWLAEHFRDEFVLRAKREGYRSRAVYKLMELNERDRFLKPGQRVVDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVL 140
           +Q AA++ G   +   + A+D+L M+        + DF   +    +   +G  P DLV+
Sbjct: 63  TQYAAQVVGDRGH---IFALDLLPMDHFAHTTVIQGDFSSEEVLAHLTALLGDAPVDLVI 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   +D  R M L E A  F   ML   G F+ K FQG   + ++   +  F
Sbjct: 120 SDMAPNMSGVETVDIPRAMYLAELALDFCHHMLKPEGAFVTKVFQGEGFDALMKNARSAF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           + V+  KP ASR  S E++L+A+G R
Sbjct: 180 KSVVVRKPKASRPRSREVYLVARGKR 205


>gi|319776273|ref|YP_004138761.1| 23S rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|329123415|ref|ZP_08251979.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           aegyptius ATCC 11116]
 gi|317450864|emb|CBY87088.1| 23S rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|327470997|gb|EGF16452.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
           aegyptius ATCC 11116]
          Length = 209

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG WSQ      G      RV+A DIL+M PI+GV F + DF D +    +   +G   
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDILEMAPIVGVDFLQGDFRDENVLNALLARVGEDK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG   ++ L  
Sbjct: 118 VDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLRE 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  F  V   KP ASR  S E++++A G++
Sbjct: 178 TRSLFNVVKVRKPEASRGRSREVYIVATGYK 208


>gi|50424141|ref|XP_460657.1| DEHA2F06842p [Debaryomyces hansenii CBS767]
 gi|49656326|emb|CAG88989.1| DEHA2F06842p [Debaryomyces hansenii]
          Length = 301

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQ+NE+ Q+ +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRRAKEEGWRARSAFKLLQLNEQFQLFKGVKRVVDLCAAPGSWSQVLSRELF 64

Query: 91  SNANNT--RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            N      ++V++D+  M PI GV   + D     + + I +  GG P D V SD A   
Sbjct: 65  ENQKQADAKIVSVDLQPMTPIEGVTTLQADITHPKTLQKILEIFGGEPADFVCSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A      +L  GG F+ K F+G   + +   L   F++VI  K
Sbjct: 125 TGLHDLDEYIQAQLILSALQLTTCILKPGGAFVAKIFRGRDIDLLYSQLSYLFERVICAK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR  S+E F++  G++
Sbjct: 185 PRSSRGTSLEAFIVCLGYK 203


>gi|90409010|ref|ZP_01217140.1| hypothetical protein PCNPT3_10771 [Psychromonas sp. CNPT3]
 gi|90309895|gb|EAS38050.1| hypothetical protein PCNPT3_10771 [Psychromonas sp. CNPT3]
          Length = 222

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 4/200 (2%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            W+  H+ND YV+ A   G R+R+ +KL +IN+K ++++S   +VDLG++PGSWSQ    
Sbjct: 25  RWMQEHVNDFYVKEANRLGLRSRAVFKLDEINKKDKLIRSGMTVVDLGAAPGSWSQWCVD 84

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYP 146
             GS     +V+A DIL M+ I GV F + DF D      + + IG +  D+VLSDM+  
Sbjct: 85  TVGSRG---KVIACDILAMDSIAGVDFLQGDFRDEAVLHALLKRIGPHKLDVVLSDMSPN 141

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G+  +D  ++M L E A     ++L   G F+VK F G   +  +  +KK F  V   
Sbjct: 142 MSGNAAMDQPKSMYLVELALEMCSDVLKKDGSFIVKVFMGADFDTFMKEVKKRFNVVKTR 201

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SRA S E++L+A GF+
Sbjct: 202 KPDSSRARSREVYLVATGFK 221


>gi|118150968|ref|NP_001071402.1| FtsJ homolog 1 [Bos taurus]
 gi|117306288|gb|AAI26604.1| FtsJ homolog 1 (E. coli) [Bos taurus]
 gi|296470729|gb|DAA12844.1| FtsJ homolog 1 [Bos taurus]
          Length = 307

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + KG+
Sbjct: 184 SSRNSSIEAFAVCKGY 199


>gi|296080818|ref|NP_001171684.1| FtsJ homolog 1 [Sus scrofa]
 gi|197281892|gb|ACH57153.1| FtsJ-like protein 1 [Sus scrofa]
          Length = 329

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLTTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + KG+
Sbjct: 184 SSRNSSIEAFAVCKGY 199


>gi|47214710|emb|CAG01063.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 297

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           ++   D Y + A+ EGWRARSA+KLLQ++++  +     R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDQEFDLFTGVTRVVDLCAAPGSWSQVLSRKLR 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPT 147
               A   ++VA+D+  M P+ GV   + D   + +  E IR   G   DLV+ D A   
Sbjct: 65  QDERAEEAKIVAVDLQAMAPLPGVTQIQGDITKVTTAQEIIRHFEGQPADLVVCDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG F+ K F+G     +   LK  F  V   K
Sbjct: 125 TGLHDVDEYIQAQLLLAALNITTHVLKPGGTFVAKIFRGKDVTLLYSQLKIFFTGVTCAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++ + +
Sbjct: 185 PRSSRNSSIEAFVVCQNY 202


>gi|168042748|ref|XP_001773849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674836|gb|EDQ61339.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 295

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+E+  IL+  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFGILEGAKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMA 144
                +   +  +VAID+  M PI GV   + D     + E  I    GG  DLV+ D A
Sbjct: 65  QPAVAAGEPHPLIVAIDLQPMAPIDGVLQIQGDITSAKTAELVIGHFDGGKADLVVCDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  AA      +L  GG+F+ K F+G   + +   LK  F  V 
Sbjct: 125 PDVTGLHDMDEFVQSQLILAALTIVTHVLRPGGNFVAKIFRGKDISLLYTQLKIFFPVVT 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR  S+E F++ +G+
Sbjct: 185 CAKPKSSRNSSIEAFVVCEGY 205


>gi|301764809|ref|XP_002917816.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like
           [Ailuropoda melanoleuca]
          Length = 329

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|281353664|gb|EFB29248.1| hypothetical protein PANDA_006186 [Ailuropoda melanoleuca]
          Length = 320

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|78065909|ref|YP_368678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. 383]
 gi|123568833|sp|Q39HN2|RLME_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77966654|gb|ABB08034.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 220

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 122/221 (55%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+DIL MEPI  V F + DF + +    
Sbjct: 58  TPGSWSQYARNKLAQGKKRDTEREGGIDGTIVALDILPMEPIADVHFLQGDFREDEVLHQ 117

Query: 128 IRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G + DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLEGRDVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K+ F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKQQFKTVAPRKPKASRDKSSETFILGRHLKR 218


>gi|74006842|ref|XP_862799.1| PREDICTED: similar to FtsJ homolog 1 isoform b isoform 2 [Canis
           familiaris]
          Length = 327

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSNVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|57111745|ref|XP_538022.1| PREDICTED: similar to Putative ribosomal RNA methyltransferase 1
           (rRNA (uridine-2-O-)-methyltransferase) (JM23 protein)
           isoform 1 [Canis familiaris]
          Length = 329

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+  + Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSNVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|109130592|ref|XP_001097658.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Macaca
           mulatta]
          Length = 329

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|255732766|ref|XP_002551306.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida tropicalis
           MYA-3404]
 gi|240131047|gb|EER30608.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida tropicalis
           MYA-3404]
          Length = 293

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 107/197 (54%), Gaps = 4/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           N+   D Y +RA+ EGWRARSA+KLLQ+NE+  + +   R+VDL ++PGSWSQV ++  G
Sbjct: 5   NKDKRDLYYRRAKEEGWRARSAFKLLQLNEEFNLFEDLTRVVDLCAAPGSWSQVLSQKLG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIG 149
            N+    +VA+D+  M PI GV   + D     + + I    GG P D V SD A    G
Sbjct: 65  PNST---IVAVDLQPMTPIDGVTTIQADITHPRTLQRILDCFGGEPADFVCSDGAPDVTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  +A      +L  GG F+ K F+G   + +   L   F KVI  KP 
Sbjct: 122 LHDLDEYIQAQLVLSALQLTTCLLKPGGKFVAKIFRGRDIDLLYSQLSYLFDKVICAKPR 181

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++  G++
Sbjct: 182 SSRGTSLEAFIVCLGYK 198


>gi|292493675|ref|YP_003529114.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus halophilus
           Nc4]
 gi|291582270|gb|ADE16727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus halophilus
           Nc4]
          Length = 212

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 120/208 (57%), Gaps = 4/208 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             +G S  WL  H  DPYV +A+ +G+R+R+ +KL +I+ + ++L+ +  +VDLG++PG 
Sbjct: 3   KNKGHSARWLREHFRDPYVTKAKAQGYRSRAVFKLQEIDTRERLLRPSMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQ A    G+     +V+A+DIL M P  GV+F + DF + +    ++  + G   DLV
Sbjct: 63  WSQWAIEQVGAQG---QVIALDILPMVPPAGVQFIQGDFCEDNVLAELQNTLAGRVVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R + L E A  FA E L   G FL+KTFQG     +   +++ 
Sbjct: 120 MSDMAPNMSGMAAVDQPRAIYLGELALAFAQEHLGPEGSFLLKTFQGEGFEALYEAIRQE 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F  V   KP ASR  S E++++A+  R+
Sbjct: 180 FSGVRIKKPSASRGRSREVYIVARRPRR 207


>gi|167526100|ref|XP_001747384.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774219|gb|EDQ87851.1| predicted protein [Monosiga brevicollis MX1]
          Length = 302

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RIT 89
           ++   D Y ++A+ EG+RARSA+KLLQ++E+  I ++  R+VDL ++PGSWSQV + ++ 
Sbjct: 5   SKDKRDIYYRQAKEEGYRARSAFKLLQLDEEFDIFRNVERVVDLCAAPGSWSQVLSQKLR 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTI 148
            +  +  ++VA+D+  M P+ GV   + D     +  E ++   GG  DLV+SD A    
Sbjct: 65  PTENDRVKIVAVDLQAMAPLPGVIQMQGDITKEATAQEIVQHFDGGYADLVVSDGAPDVT 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID      L  AA   +  +L  GG F+ K F+G     +   L+  F  V   KP
Sbjct: 125 GLHDIDEYVQSQLILAALNISTHVLKRGGTFIAKIFRGRDVQLLYAQLETFFDVVTCSKP 184

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F++  G+
Sbjct: 185 RSSRNSSIEAFVVCVGY 201


>gi|163857845|ref|YP_001632143.1| ribosomal RNA large subunit methyltransferase j [Bordetella petrii
           DSM 12804]
 gi|226703282|sp|A9HYV0|RLME_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|163261573|emb|CAP43875.1| ribosomal RNA large subunit methyltransferase j [Bordetella petrii]
          Length = 211

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 128/208 (61%), Gaps = 3/208 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +  S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++++    +VDLGS+PGSW
Sbjct: 3   KKKFSKDWIHQHINDPYVKMAQQKGYRARAAFKLIEILDTEKLMRRGDIVVDLGSAPGSW 62

Query: 82  SQVAARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
           SQVA           + R++A+D+L MEP+ GV+F + DF D    + +++ +GG P  L
Sbjct: 63  SQVARERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRDEAVLQQLQEMVGGQPVSL 122

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   +CE A  FA   L   G  +VK F G   + I+   K+
Sbjct: 123 VISDMAPNLSGVGVADSARIQHVCELALDFACNHLKPDGALIVKAFHGSGFSQIVQSFKQ 182

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F++V+  KP ASR +S E FL+A+  +
Sbjct: 183 RFKRVVERKPKASRDKSSETFLVARDLK 210


>gi|74317150|ref|YP_314890.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
 gi|123612003|sp|Q3SJR5|RLME_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|74056645|gb|AAZ97085.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
          Length = 220

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 79/208 (37%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            +      S   W++ H+ D YV++AQ +G+R+R+AYKLL+I+ +  +L     +VDLG+
Sbjct: 2   AQKPKRTKSGSAWMHEHVTDAYVKKAQQDGFRSRAAYKLLEIDSRDHLLHPGMTVVDLGA 61

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGN 135
           +PGSW QVA +         RV+AID+L + P+ GV+  + DF   D+  ++   +    
Sbjct: 62  APGSWCQVAVQKMK---RQGRVLAIDLLPVAPLPGVEALQGDFTAPDTLAWLENTLQAAR 118

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLVLSDMA    G    D  R   LCE A  FA+  L   G FLVK FQG    D    
Sbjct: 119 VDLVLSDMAPNMSGVMLRDQARHYELCELALDFAVNWLKPDGAFLVKVFQGSGFEDFRNA 178

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAK 223
           +++ F +V+  KP ASR  S E++LL +
Sbjct: 179 MRRAFDQVVIRKPDASRDRSSEVYLLGR 206


>gi|193785818|dbj|BAG51253.1| unnamed protein product [Homo sapiens]
          Length = 327

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV +R  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSRKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|77166028|ref|YP_344553.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus oceani
           ATCC 19707]
 gi|254436320|ref|ZP_05049826.1| ribosomal RNA large subunit methyltransferase J [Nitrosococcus
           oceani AFC27]
 gi|123593534|sp|Q3J823|RLME_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|76884342|gb|ABA59023.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207088010|gb|EDZ65283.1| ribosomal RNA large subunit methyltransferase J [Nitrosococcus
           oceani AFC27]
          Length = 212

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             +  S  WL  H  D YV +A+ +G+R+R+ +KL +I+ + ++L   R ++DLG++PG 
Sbjct: 3   KRKSHSARWLREHFRDSYVIQAKAQGYRSRAVFKLQEIDTRERLLGPGRVVIDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ AA   G      RV+A+DIL M    GV+F + DF + +    ++  + G   DLV
Sbjct: 63  WSQWAAERVGERG---RVIAMDILPMLSCPGVQFIQGDFREDNVLAELQNTLAGCVVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R + L E A  FA E L   G FL+KTFQG   + +  ++++ 
Sbjct: 120 MSDMAPNMSGMAAVDQPRAIYLGELALAFAQESLGPEGSFLLKTFQGEGFDALYEVIRQD 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F +V   KP ASR  S E++++A+  RK
Sbjct: 180 FSRVRIHKPPASRGRSREVYIVARRSRK 207


>gi|76808881|ref|YP_333018.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
           pseudomallei 1710b]
 gi|121599034|ref|YP_992622.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei SAVP1]
 gi|217423678|ref|ZP_03455179.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 576]
 gi|238563619|ref|ZP_00438573.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei GB8 horse 4]
 gi|242315402|ref|ZP_04814418.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106b]
 gi|251767842|ref|ZP_02268580.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei PRL-20]
 gi|254199450|ref|ZP_04905816.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei FMH]
 gi|76578334|gb|ABA47809.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
           pseudomallei 1710b]
 gi|121227844|gb|ABM50362.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei SAVP1]
 gi|147749046|gb|EDK56120.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei FMH]
 gi|217393536|gb|EEC33557.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 576]
 gi|238520335|gb|EEP83796.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei GB8 horse 4]
 gi|242138641|gb|EES25043.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106b]
 gi|243061551|gb|EES43737.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei PRL-20]
          Length = 252

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 125/238 (52%), Gaps = 16/238 (6%)

Query: 2   VKPPGSSSRR--GLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
            K   S S R   L +  KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+
Sbjct: 17  AKSAASRSNRQQSLHRMAKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEID 72

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITG---------SNANNTRVVAIDILDMEPIL 110
           E+ ++++  + IVDLG++PGSWSQ A                  +  ++A+D+L MEP+ 
Sbjct: 73  EQDKLIRPGQVIVDLGAAPGSWSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPVA 132

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            V F + DF +      + + + G   DLV+SDMA    G    D  R   +C+ A  FA
Sbjct: 133 DVHFIQGDFREESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFA 192

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L   G  LVK F G   + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 193 QNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 250


>gi|291222138|ref|XP_002731075.1| PREDICTED: FtsJ homolog 1-like [Saccoglossus kowalevskii]
          Length = 361

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 103/198 (52%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KLLQINE+  I +   ++VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEFNIFKDVSKVVDLCAAPGSWSQVLSRRLR 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPT 147
                 + ++VA+D+  M P+ GV   + D   + +  E I    G   DLV+ D A   
Sbjct: 65  GQDREADPKIVAVDLQAMAPLPGVIQIQGDITKVSTAMEIIGHFEGEQADLVVCDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG F+ K F+G     +   LK  F KV   K
Sbjct: 125 TGLHDLDEYIQAQLLLAALNITTHVLKPGGTFVAKIFRGKDVTLLYSQLKIFFPKVTIAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++ + +
Sbjct: 185 PRSSRNSSIEAFVVCENY 202


>gi|170697951|ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
 gi|170137117|gb|EDT05362.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
          Length = 220

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEPI  V F + DF + D    
Sbjct: 58  TPGSWSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K+ F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLKQ 218


>gi|29029589|ref|NP_803183.1| putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
 gi|29029591|ref|NP_803188.1| putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
 gi|3511153|gb|AAC33734.1| cell division protein [Homo sapiens]
 gi|119571169|gb|EAW50784.1| FtsJ homolog 1 (E. coli), isoform CRA_b [Homo sapiens]
          Length = 327

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|7110661|ref|NP_036412.1| putative ribosomal RNA methyltransferase 1 isoform a [Homo sapiens]
 gi|12643879|sp|Q9UET6|RRMJ1_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase 1; AltName:
           Full=Protein ftsJ homolog 1; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase
 gi|3334739|emb|CAA06749.1| JM23 [Homo sapiens]
 gi|23270836|gb|AAH23584.1| FtsJ homolog 1 (E. coli) [Homo sapiens]
 gi|119571167|gb|EAW50782.1| FtsJ homolog 1 (E. coli), isoform CRA_a [Homo sapiens]
 gi|119571168|gb|EAW50783.1| FtsJ homolog 1 (E. coli), isoform CRA_a [Homo sapiens]
 gi|189054765|dbj|BAG37587.1| unnamed protein product [Homo sapiens]
 gi|307686265|dbj|BAJ21063.1| FtsJ homolog 1 [synthetic construct]
 gi|312151394|gb|ADQ32209.1| FtsJ homolog 1 (E. coli) [synthetic construct]
          Length = 329

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|237811778|ref|YP_002896229.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei MSHR346]
 gi|237504609|gb|ACQ96927.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei MSHR346]
          Length = 252

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 125/238 (52%), Gaps = 16/238 (6%)

Query: 2   VKPPGSSSRR--GLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
            K   S S R   L +  KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+
Sbjct: 17  AKSAASRSNRQQSLHRMAKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEID 72

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITG---------SNANNTRVVAIDILDMEPIL 110
           E+ ++++  + IVDLG++PGSWSQ A                  +  ++A+D+L MEP+ 
Sbjct: 73  EQDKLIRPGQVIVDLGAAPGSWSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPVA 132

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            V F + DF +      + + + G   DLV+SDMA    G    D  R   +C+ A  FA
Sbjct: 133 DVHFIQGDFREESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFA 192

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L   G  LVK F G   + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 193 QNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 250


>gi|115351226|ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           AMMD]
 gi|122323529|sp|Q0BGJ2|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115281214|gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
          Length = 220

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/212 (38%), Positives = 119/212 (56%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +++WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A
Sbjct: 7   NQNWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYA 66

Query: 86  ARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
                             +  ++A+D+L MEPI  V F + DF + D    +   + G  
Sbjct: 67  RNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLEDVLEGRA 126

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L +  ++
Sbjct: 187 FKQQFKVVAPRKPKASRDKSSETFILGRQLKQ 218


>gi|319793960|ref|YP_004155600.1| ribosomal RNA methyltransferase rrmj/ftsj [Variovorax paradoxus
           EPS]
 gi|315596423|gb|ADU37489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
           EPS]
          Length = 222

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           ++ K K++     ++ WL+ HINDPYV+ A  EG+RAR+AYKL +I+E   +++  + +V
Sbjct: 1   MSTKAKSKKV---NKAWLHDHINDPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVV 57

Query: 73  DLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           DLGS+PG+WSQ   R            N  ++A+D+L MEPI GV F + DF +++  E 
Sbjct: 58  DLGSTPGAWSQYLRRRMSPEGAAIGTLNGTIIALDMLAMEPIEGVTFIQGDFREVELLEQ 117

Query: 128 IRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   L E A  FA   L   G  + K F G
Sbjct: 118 VLGVLAGRKADLVVSDMAPNISGIHSADGARIAHLIELAVDFAQHHLKPEGALVAKLFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G  ++ + L K  F+ V   KP ASR +S E FL+  G +
Sbjct: 178 GGYDESVKLFKASFRTVKPFKPKASRDKSAETFLVGMGLK 217


>gi|298400895|gb|ADI81767.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 2   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 61

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              SN ++ ++VA+D+  M P+ GVK  + D   + +  E I++  G   DLV+ D A  
Sbjct: 62  QNTSNTDDVKIVAVDLQAMAPLPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPD 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 122 VTGLHDIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDFVTVS 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 182 KPRSSRNSSIEAFVICQNYK 201


>gi|73541859|ref|YP_296379.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia eutropha
           JMP134]
 gi|83305667|sp|Q46Z98|RLME_CUPPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|72119272|gb|AAZ61535.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia eutropha
           JMP134]
          Length = 225

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 123/221 (55%), Gaps = 11/221 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            K +S    ++ WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ +++Q  + IVDLG+
Sbjct: 2   AKGKSKNKFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIQPGQVIVDLGA 61

Query: 77  SPGSWSQVAARITGS------NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ A     +         +  VVAIDIL MEP+  V F + DF + D +  + +
Sbjct: 62  APGSWSQYARNKLAASPRATGGKPDGAVVAIDILPMEPVADVTFIQGDFREEDVFRQLEE 121

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     G   DLVLSDMA    G    D  R   LC+ A  FA   L   G  LVK F 
Sbjct: 122 VVMAASGGAKIDLVLSDMAPNLSGVASADSARIEYLCDLALDFAQTHLKPDGALLVKCFH 181

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 182 GSGYSQIVEKFKRQFKVVAPRKPKASRDKSSETFILGRYLK 222


>gi|320581605|gb|EFW95825.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Pichia angusta DL-1]
          Length = 299

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 2/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-IT 89
           ++   D Y ++A+ EGWRARSAYKLLQ+NE+  +  +  R+VDL ++PGSWSQV +R I 
Sbjct: 5   SKDKRDVYYRKAKEEGWRARSAYKLLQLNEQFGLFNNIHRVVDLCAAPGSWSQVLSREIF 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
            +  ++ ++VA+D+  M PI  V   + D  D  + + I    GG   D V SD A    
Sbjct: 65  KNERSDAQIVAVDLQPMAPIDDVVTLQADITDPRTLDKILHIFGGEKADFVCSDGAPDVT 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L   A   A  +L  GG F+ K F+G   + +   L   F+KV+  KP
Sbjct: 125 GLHDLDEYIQAQLVLCALRLATCLLKEGGTFVAKIFRGRDIDLLYSQLGFLFEKVVCAKP 184

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR  S+E F++  G+R
Sbjct: 185 RASRGTSLESFIVCIGYR 202


>gi|149927097|ref|ZP_01915355.1| ribosomal RNA large subunit methyltransferase j [Limnobacter sp.
           MED105]
 gi|149824318|gb|EDM83538.1| ribosomal RNA large subunit methyltransferase j [Limnobacter sp.
           MED105]
          Length = 211

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 118/199 (59%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           + HINDPYV+ A   G+RAR+A+KL +I E   +L+   ++VDLGS+PGSWSQV     +
Sbjct: 13  HDHINDPYVKMATNAGYRARAAFKLKEIAEPEGLLKPGIKVVDLGSAPGSWSQVLREALV 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
                 N R++A+D+L MEPI GV+F + DF D    E + Q +GG   DLV+SDMA   
Sbjct: 73  GPGGVINGRIIALDLLPMEPIAGVEFIQGDFRDEAVLEDLNQRLGGEKLDLVVSDMAPNL 132

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    D  R   +CE A  FAL  L   G  +VK F G + ++I+  +K+ F+ V   K
Sbjct: 133 SGVAAADSARIEHVCELAIDFALNHLKPNGALIVKIFHGSSYSNIVHQMKQVFKSVSPRK 192

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR  S E FLL KG +
Sbjct: 193 PKASRDRSRETFLLCKGLK 211


>gi|158298233|ref|XP_318425.4| AGAP003974-PA [Anopheles gambiae str. PEST]
 gi|157014425|gb|EAA13594.4| AGAP003974-PA [Anopheles gambiae str. PEST]
          Length = 304

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KL+ I+E  QI     R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLIHIDEVFQIFDGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSDM 143
                +  +  +++A+D+  M P+ G+   + D   L + E I +  G      LV+ D 
Sbjct: 65  ESRDPAERDEVKIIAVDLQTMGPLPGIIQLQGDITKLSTAEAIIEHFGDQQKAQLVICDG 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID      L  AA      +L  GG F+ K F+G  T+ +   L+  F++V
Sbjct: 125 APDVTGLHDIDEYIQSQLLLAALNITTHVLTPGGTFVAKIFRGKDTSLLYSQLRIFFERV 184

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S+E F++ + +R
Sbjct: 185 TIAKPPSSRNSSIEAFVVCQDYR 207


>gi|254522154|ref|ZP_05134209.1| ribosomal RNA large subunit methyltransferase J [Stenotrophomonas
           sp. SKA14]
 gi|219719745|gb|EED38270.1| ribosomal RNA large subunit methyltransferase J [Stenotrophomonas
           sp. SKA14]
          Length = 210

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +DP+V++AQ EG R+R+AYKL ++ E+ ++L+ +  +VDLG++PG 
Sbjct: 3   TRSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   R  G   +  RV+A+DILDM P+ GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRRQIG---DTGRVLALDILDMPPLAGVEFLHGDFREETVLSQFEAMLGDQPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG   +D +  +++ 
Sbjct: 120 LSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVREMRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           + KV   KP ASR  S E++ L +G R
Sbjct: 180 YDKVSIRKPEASRKRSPEVYALGQGKR 206


>gi|254427497|ref|ZP_05041204.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
           DG881]
 gi|196193666|gb|EDX88625.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
           DG881]
          Length = 208

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +   S   +S+ WL  H NDP+V +AQ +G+R+R+++KLL+++EK ++ +    ++DLG+
Sbjct: 1   MAKSSRSKTSKAWLKEHFNDPWVAKAQEQGYRSRASFKLLEMHEKDRLFRPGMTVLDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQVA ++ G       V+A DIL M+ +  V F + DF +   +E I  ++G   
Sbjct: 61  APGGWSQVAGQLIGGKGT---VIASDILAMDALPDVTFIEGDFREDAIYEQILASLGDRR 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G+  +D  R M L E A   A  +L   G FLVK FQG    D    
Sbjct: 118 ADLVMSDMAPNMSGNSAVDQPRAMYLAELALDMAERVLEPDGLFLVKVFQGEGFEDYRKA 177

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+  F++V+  KP ASRA S E++ L  G +
Sbjct: 178 LQSRFKRVVSRKPAASRARSTEVYQLGFGLK 208


>gi|107022371|ref|YP_620698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           AU 1054]
 gi|116689318|ref|YP_834941.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           HI2424]
 gi|170732617|ref|YP_001764564.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           MC0-3]
 gi|206559643|ref|YP_002230404.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia cenocepacia J2315]
 gi|254245761|ref|ZP_04939082.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           PC184]
 gi|123371703|sp|Q1BXD0|RLME_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459622|sp|A0K6C1|RLME_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703285|sp|B1JZE9|RLME_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703286|sp|B4E5F3|RLME_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|105892560|gb|ABF75725.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647407|gb|ABK08048.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|124870537|gb|EAY62253.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           PC184]
 gi|169815859|gb|ACA90442.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           MC0-3]
 gi|198035681|emb|CAR51568.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/220 (40%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+DIL MEPI  V F + DF + D    
Sbjct: 58  TPGSWSQYARNKLAQGKKRDAEREGGIDGTIVALDILPMEPIADVHFLQGDFREDDVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217


>gi|146329213|ref|YP_001210115.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|158513305|sp|A5EXB6|RLME_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146232683|gb|ABQ13661.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 210

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 118/206 (57%), Gaps = 5/206 (2%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H +D +V +A+ EG+R+R+ YKL +I EK +I++ N  +V+LG++PG W
Sbjct: 3   RSKSSGRWLKEHHSDVFVLKAREEGFRSRAVYKLKEIQEKDRIIRPNMTVVELGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG--GNPDLV 139
           SQ  A I        R++A+DIL M+ +  V F + DF +      +   IG     DLV
Sbjct: 63  SQYVAGILN---GRGRMIALDILPMDALPDVHFIQGDFREETVLNALYDIIGEGNYVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA  T G + +D  R+M L E A  FA E L  GGDFL K F G   + +   LK  
Sbjct: 120 ISDMAPNTSGIKSVDQARSMHLVELAADFAQERLVAGGDFLCKVFHGAGFDALFQHLKTQ 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F  V+  KP ASRA S E +LLA+GF
Sbjct: 180 FSTVLTRKPQASRARSQETYLLARGF 205


>gi|172060240|ref|YP_001807892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MC40-6]
 gi|226703284|sp|B1YMW2|RLME_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|171992757|gb|ACB63676.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MC40-6]
          Length = 220

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 120/221 (54%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEPI  V F + DF + D    
Sbjct: 58  TPGSWSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G
Sbjct: 118 LEDVLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K+ F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLKQ 218


>gi|161830541|ref|YP_001597195.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 331]
 gi|189040687|sp|A9N8M5|RLME_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|161762408|gb|ABX78050.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 331]
          Length = 212

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 126/205 (61%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H  DPYV+RA+ EG+ +R+AYKLL+I++K+++ + +  ++DLG++PG WSQVA
Sbjct: 4   SKRWLEEHAKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-----IGGNPDLVL 140
             + G       V+AID+L M+ +L V F + DF + + +  +        + G  DLV+
Sbjct: 64  KDLVGPKGV---VIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTGQVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G + +D  R++ L E A   A ++L  GG FLVK FQG   +  L  L+ +F
Sbjct: 121 SDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V  +KP ASR+ S E+++LA  F
Sbjct: 181 NQVKFLKPSASRSRSSEIYILAGEF 205


>gi|29654650|ref|NP_820342.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
 gi|154707305|ref|YP_001424788.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|212212272|ref|YP_002303208.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuG_Q212]
 gi|81628790|sp|Q83BY4|RLME_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040686|sp|A9KGE6|RLME_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703292|sp|B6IZD5|RLME_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|29541918|gb|AAO90856.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
 gi|154356591|gb|ABS78053.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|212010682|gb|ACJ18063.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 212

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 126/205 (61%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H  DPYV+RA+ EG+ +R+AYKLL+I++K+++ + +  ++DLG++PG WSQVA
Sbjct: 4   SKRWLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-----IGGNPDLVL 140
             + G       V+AID+L M+ +L V F + DF + + +  +        + G  DLV+
Sbjct: 64  KDLVGPKGV---VIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTGQVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G + +D  R++ L E A   A ++L  GG FLVK FQG   +  L  L+ +F
Sbjct: 121 SDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V  +KP ASR+ S E+++LA  F
Sbjct: 181 NQVKFLKPSASRSRSSEIYILAGEF 205


>gi|194365244|ref|YP_002027854.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Stenotrophomonas
           maltophilia R551-3]
 gi|226705317|sp|B4SRA0|RLME_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|194348048|gb|ACF51171.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Stenotrophomonas
           maltophilia R551-3]
          Length = 210

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +DP+V++AQ EG R+R+AYKL ++ E+ ++L+ +  +VDLG++PG 
Sbjct: 3   TRSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   R  G   +  RV+A+DILDM P+ GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRRQIG---DTGRVLALDILDMPPLAGVEFLHGDFREETVLSQFEAMLGDQPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG   +D +  +++ 
Sbjct: 120 LSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           + KV   KP ASR  S E++ L +G R
Sbjct: 180 YDKVSIRKPEASRKRSPEVYALGQGKR 206


>gi|146419553|ref|XP_001485738.1| hypothetical protein PGUG_01409 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 293

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQ++E+  +    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRRAKEEGWRARSAFKLLQLDEEFGLFSGVKRVVDLCAAPGSWSQVLSREIY 64

Query: 91  SN--ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            N    + ++VA+D+  M PI GV   + D     + + I    GG P D V SD A   
Sbjct: 65  KNLKGEDAKIVAVDLQPMTPIDGVITLQADITHPKTLQRILDIFGGEPADFVCSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L   A      +L  GG F+ K F+G   + +   L   F++V+  K
Sbjct: 125 TGLHDLDEYIQAQLVLCALQLTTCVLKEGGTFVAKIFRGRDIDLLYSQLGHLFERVVCAK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P A R  S+E F++  G++
Sbjct: 185 PRALRGTSLEAFIVCIGYK 203


>gi|254252702|ref|ZP_04946020.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
 gi|124895311|gb|EAY69191.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
          Length = 220

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEPI  V F + DF + D    
Sbjct: 58  APGSWSQYARNKLAQGKRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDDVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G P DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEDVLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K+ F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|121605506|ref|YP_982835.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas
           naphthalenivorans CJ2]
 gi|143460978|sp|A1VQI6|RLME_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120594475|gb|ABM37914.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 245

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 10/216 (4%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             +  ++ WL+ HINDPYV++A+ EG+RAR+A+KL +++E   +++    +VDLGS+PG+
Sbjct: 25  KGKKVNKAWLHDHINDPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGA 84

Query: 81  WSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG- 134
           WSQ   R            N R++ +D+L MEPI GV F + DF + +    + QA+   
Sbjct: 85  WSQYVRRKLSPTGAAVGALNGRIIGLDLLPMEPIEGVVFIQGDFREPEVLAKLEQALSTE 144

Query: 135 ----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 DLV+SDMA    G    D  R   L E A  FA   +   G  +VK F G   +
Sbjct: 145 KGPVKVDLVISDMAPNLSGIESADAARIAHLVELAVEFAQTRMKPDGALVVKLFHGSGYD 204

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           D++ L +  F+ V  +KP ASR  S E FL+ +G +
Sbjct: 205 DLVKLFQASFKVVKRMKPKASRPNSSETFLVGRGLK 240


>gi|167562362|ref|ZP_02355278.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           oklahomensis EO147]
 gi|167574341|ref|ZP_02367215.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           oklahomensis C6786]
          Length = 220

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 121/221 (54%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEPI  V F + DF + D    
Sbjct: 58  APGSWSQYARNKLAQGKRRDTVREGGIDGTIIALDMLPMEPIADVHFIQGDFREDDVLGQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G P DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEELLAGRPVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKHQFKMVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|295677139|ref|YP_003605663.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1002]
 gi|295436982|gb|ADG16152.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1002]
          Length = 220

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYA 66

Query: 86  ARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+DIL MEP+  V F + DF +      + + +G   
Sbjct: 67  RNKLAGGSQRNAEREGGIDGTIIALDILPMEPVADVHFIQGDFREDSVLVQLEELVGARQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAIADAARIEHLCDLALEFAQSHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L K  ++
Sbjct: 187 FKRQFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|260793442|ref|XP_002591721.1| hypothetical protein BRAFLDRAFT_80816 [Branchiostoma floridae]
 gi|229276930|gb|EEN47732.1| hypothetical protein BRAFLDRAFT_80816 [Branchiostoma floridae]
          Length = 303

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 5/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KL+QI+E+  +L   +++VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLMQIDEEFNVLSGVQKVVDLCAAPGSWSQVLSKRLR 64

Query: 89  --TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAY 145
                 +++ ++VA+D+  M PI GV   + D   + +  E I    G   DLV+ D A 
Sbjct: 65  GEGKQKSDDVKIVAVDLQAMAPIPGVIQIQGDITKVSTAQEIIGHFSGEQADLVVCDGAP 124

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V  
Sbjct: 125 DVTGLHDIDEYIQAQLLLAALNITTHVLKKGGGFVAKIFRGKDITLLYSQLKIFFPDVTV 184

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ +G+
Sbjct: 185 AKPRSSRNSSIESFVVCRGY 204


>gi|121607215|ref|YP_995022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
           eiseniae EF01-2]
 gi|143462104|sp|A1WEE7|RLME_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|121551855|gb|ABM56004.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
           eiseniae EF01-2]
          Length = 242

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/213 (41%), Positives = 128/213 (60%), Gaps = 5/213 (2%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK RS + + + WL++H+NDPYVQRA+ EG+RAR+AYKL +I+E+  +++    +VDLG
Sbjct: 2   KVKTRSKKVN-KAWLDQHVNDPYVQRARKEGYRARAAYKLREIDEQLGLIRPGYTVVDLG 60

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
           ++PG+WSQ   R   +      ++A+DIL MEP+ GV     DF   D  + + QA+ G 
Sbjct: 61  ATPGAWSQYLRRRMAAEGA---IIALDILPMEPLEGVTCLHGDFRAPDVQQRLEQALAGR 117

Query: 136 P-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+V+SDMA    G    D  R   L E A  F+   L   G  LVK F G   +D+  
Sbjct: 118 VVDVVVSDMAPNLSGIACADAARMADLVELAVAFSCRHLKPDGALLVKLFHGSGYSDLAA 177

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L K+ F +V+ +KP ASR +S E FLL +G +K
Sbjct: 178 LFKQTFLRVVPLKPKASRDKSSETFLLGRGLKK 210


>gi|209517186|ref|ZP_03266031.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
 gi|209502322|gb|EEA02333.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
          Length = 220

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYA 66

Query: 86  ARITGSN---------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                S            +  ++A+DIL MEP+  V F + DF +      + + +G   
Sbjct: 67  RNKLASGAQRNAEREGGIDGTIIALDILPMEPVADVHFIQGDFREDSVLVQLEELVGARQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAIADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L K  ++
Sbjct: 187 FKRQFKVVGARKPKASRDKSSETFILGKHLKR 218


>gi|90075218|dbj|BAE87289.1| unnamed protein product [Macaca fascicularis]
          Length = 299

 Score =  239 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|257095284|ref|YP_003168925.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047808|gb|ACV36996.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 206

 Score =  239 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS  WL  H++D YVQRA+ EG+R+R+AYKL+ I++   +L+S   IVDLG+SPG 
Sbjct: 2   NRSASSNRWLREHVSDAYVQRARAEGYRSRAAYKLMAIDDTDHLLRSGDVIVDLGASPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLV 139
           WSQVAAR         RV+A+D+L+MEP+  V F + DF + D    +   + G    LV
Sbjct: 62  WSQVAARRLQGGG---RVIAVDLLEMEPLRDVTFLQGDFREPDVIGRLETILAGKKVGLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDM+    G    D  R M L E    FA + L   G FLVK FQG   +D L  ++K 
Sbjct: 119 LSDMSPNISGIAVCDQARGMHLAELGLEFACKWLKPEGAFLVKVFQGHGFDDFLAAMRKA 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+ V   KP ASR  S E++LL K  +
Sbjct: 179 FKSVASRKPDASRDRSPEIYLLGKTLK 205


>gi|300113259|ref|YP_003759834.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
           C-113]
 gi|299539196|gb|ADJ27513.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
           C-113]
          Length = 212

 Score =  239 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/208 (37%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
             +  S  WL  H  D YV +A+ +G+R+R+ +KL QI+ + ++L     IVDLG++PG 
Sbjct: 3   KRKSHSARWLREHFRDSYVTQAKAQGYRSRAVFKLQQIDARERLLCPGSVIVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
           WSQ AA   G      +V+A+DIL M P  GV+F + DF + +   E          DLV
Sbjct: 63  WSQWAADRVGERG---QVIALDILPMLPYPGVRFIQGDFREDNILVELQNTLTDCAVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G   +D  R + L E A  FA E L   G FL+KTFQG   + +  ++++ 
Sbjct: 120 MSDMAPNMSGMAAVDQPRVIYLGELALAFAQESLGPEGSFLLKTFQGEGFDTLYEVIRQD 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F +V   KP ASR  S E++++A+  RK
Sbjct: 180 FSQVRIHKPPASRGRSREVYIVARRSRK 207


>gi|88658179|ref|YP_507347.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           chaffeensis str. Arkansas]
 gi|123493402|sp|Q2GGT6|RLME_EHRCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88599636|gb|ABD45105.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 212

 Score =  239 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 2/203 (0%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  WL+R +NDPYV  A+ +G+R+R+ +KL++++ K  I +  + ++DLGSSPG WSQ 
Sbjct: 2   SSTRWLHRQLNDPYVSLAKKQGYRSRATFKLIEMDSKFSIFKKGQYVLDLGSSPGGWSQF 61

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           AA+    N NN  V A+DI +M+ I  V F + D ++ D      +      D++LSDMA
Sbjct: 62  AAQRVSHNNNNP-VFAVDIQNMDAIPNVIFIQCDIIN-DIELLSDKFHNKKFDVILSDMA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G++++DH   ++LCE +    +      G F+ K  QG    +    +K +FQ V 
Sbjct: 120 PKACGNKQVDHANIINLCEISLDIVVRFTRENGVFITKILQGEYEKEFYQSMKTYFQSVK 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
           + KP ASR +S EM+L+  GF+K
Sbjct: 180 YFKPKASRKDSSEMYLVGLGFKK 202


>gi|190573711|ref|YP_001971556.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
 gi|226705318|sp|B2FKA1|RLME_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|190011633|emb|CAQ45252.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
          Length = 210

 Score =  239 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           +   SS+ WL  H +DP+V++AQ EG R+R+AYKL ++ E+ ++L+ +  +VDLG++PG 
Sbjct: 3   TRSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   R  G   +  RV+A+DILDM P+ GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRRQIG---DTGRVLALDILDMPPLAGVEFLHGDFREEAVLSQFEAMLGDQPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG   +D +  +++ 
Sbjct: 120 LSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           + KV   KP ASR  S E++ L +G R
Sbjct: 180 YDKVSIRKPEASRKRSPEVYALGQGKR 206


>gi|319786408|ref|YP_004145883.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464920|gb|ADV26652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 227

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H +DPYV++AQ EG R+R+AYKL ++ E+ ++L+    +VDLG++PG WSQ   + 
Sbjct: 28  WLREHFSDPYVKKAQAEGLRSRAAYKLEELLERDRLLKPGMAVVDLGAAPGGWSQYVRQA 87

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G   ++ RV+A+DIL+M P+ GV+F   DF + D    +   + G P DLVLSDMA   
Sbjct: 88  LG---DSGRVIALDILEMPPLAGVEFLHGDFREDDVLSQLESLLDGQPVDLVLSDMAPNM 144

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  R M L E A  FA   L  GG FL+K FQG   ++ +  L++ ++KV   K
Sbjct: 145 SGVDAVDQPRAMYLAELAMEFADNHLRPGGAFLIKLFQGVGFDEYVRQLRRRYEKVAIRK 204

Query: 208 PVASRAESVEMFLLAKG 224
           P ASR  S E++ L +G
Sbjct: 205 PAASRKRSPEVYALGQG 221


>gi|153209329|ref|ZP_01947348.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           'MSU Goat Q177']
 gi|165924044|ref|ZP_02219876.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 334]
 gi|212218759|ref|YP_002305546.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuK_Q154]
 gi|226703291|sp|B6J802|RLME_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|120575400|gb|EAX32024.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           'MSU Goat Q177']
 gi|165916503|gb|EDR35107.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
           RSA 334]
 gi|212013021|gb|ACJ20401.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 212

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 126/205 (61%), Gaps = 8/205 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+ WL  H  DPYV+RA+ EG+ +R+AYKLL+I++K+++ + +  ++DLG++PG WSQVA
Sbjct: 4   SKRWLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-----IGGNPDLVL 140
             + G       V+AID+L ++ +L V F + DF + + +  +        + G  DLV+
Sbjct: 64  KDLVGPKGV---VIAIDLLPIQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTGQVDLVI 120

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G + +D  R++ L E A   A ++L  GG FLVK FQG   +  L  L+ +F
Sbjct: 121 SDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYF 180

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V  +KP ASR+ S E+++LA  F
Sbjct: 181 NQVKFLKPSASRSRSSEIYILAGEF 205


>gi|58584834|ref|YP_198407.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|75497746|sp|Q5GS59|RLME_WOLTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58419150|gb|AAW71165.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 216

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 138/215 (64%), Gaps = 9/215 (4%)

Query: 12  GLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
            +  +VK  +  + SS  WL+RH+ND YVQ+   + +R+RSAYKL++I+ K ++LQ+ ++
Sbjct: 3   AIKTRVKTAKGRKLSSTRWLHRHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQK 62

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           IVDLG+SPG WSQVA++         +VVAIDI  +  I GVK+ ++D  +L++     +
Sbjct: 63  IVDLGASPGGWSQVASQ------KGVKVVAIDIKPVNTISGVKYIQYDINELETLR--ER 114

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 D++LSDMA  + G + +DH+R M LCEAA  FA   LN GG F+VK FQG +  
Sbjct: 115 FKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQGESDK 174

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           D    LKK F+ V + KP +SR+ES EM+L+  GF
Sbjct: 175 DFYNELKKMFKIVKYFKPKSSRSESTEMYLVGLGF 209


>gi|124266460|ref|YP_001020464.1| putative ribosomal RNA large subunit methyltransferase J
           [Methylibium petroleiphilum PM1]
 gi|158512857|sp|A2SF90|RLME_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|124259235|gb|ABM94229.1| putative ribosomal RNA large subunit methyltransferase J
           [Methylibium petroleiphilum PM1]
          Length = 224

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 126/222 (56%), Gaps = 12/222 (5%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KVK +S + + + WLN HINDPYV+ AQ EG+RAR+AYKL +I+E   +++  + +VDLG
Sbjct: 2   KVKTKSKKVN-KAWLNDHINDPYVKLAQKEGYRARAAYKLKEIDEALGLIKPGQVVVDLG 60

Query: 76  SSPGSWSQVAARITGSNA----------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           ++PG+WSQ   R                 N R++A+D+LD EPI GV+F + DF D    
Sbjct: 61  AAPGAWSQYLRRRFAPKEAGTGGAAAGALNGRIIALDLLDFEPIEGVQFIQGDFHDEAVL 120

Query: 126 EFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
             +  AIGG   D+V+SDMA    G    D  R   L E A  FA   L+  G  + K F
Sbjct: 121 AELSAAIGGRGVDVVVSDMAPNLSGIASSDSARIALLVELAVEFAETHLHPHGALVCKVF 180

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            G   + ++ L KK F+ V  +KP ASR +S E FL+  G +
Sbjct: 181 HGSGHSQLVELFKKRFRVVKPIKPKASRDKSSETFLVGIGLK 222


>gi|291413885|ref|XP_002723197.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
          Length = 333

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 8/198 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PG WSQV ++ TG     
Sbjct: 10  DVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGGWSQVLSQKTG-GQEG 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            +V+A+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A    G   +D
Sbjct: 69  GQVLAVDLQAMAPLPGVTQIQGDITQLSTAKEIIQHFQGCPADLVVCDGAPDVTGLHDVD 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  
Sbjct: 129 EYMQAQLLLAALNIATHVLKPGGCFMAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNS 188

Query: 215 SVEMFLLAK------GFR 226
           S+E F + +      GF+
Sbjct: 189 SIEAFAVCQAYDPPEGFK 206


>gi|33592218|ref|NP_879862.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis Tohama I]
 gi|81578758|sp|Q7VZ56|RLME_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33571863|emb|CAE41377.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis Tohama I]
 gi|332381635|gb|AEE66482.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis CS]
          Length = 210

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KLL+I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKLMRRGDVVVDLGSAPGSWSQVA 66

Query: 86  ARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                      + R++A+D+L MEP+ GV+F + DF + +  E + + + G P DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFREEEVLEQLARMVDGQPVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  FA   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGVADSARIQHVCELALEFACAHLKPNGALIVKAFHGSGFSQIVQSYKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|186475643|ref|YP_001857113.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
           STM815]
 gi|226703288|sp|B2JFN9|RLME_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|184192102|gb|ACC70067.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
           STM815]
          Length = 220

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 12/218 (5%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           ++   +S  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PG
Sbjct: 3   KNKFNTS--WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPG 60

Query: 80  SWSQVAARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           SWSQ                    +  ++A+D+L MEPI  V F + DF + +    + +
Sbjct: 61  SWSQYVRNKLSQGKHRDAQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDNVLAQLEE 120

Query: 131 AIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
            +G  + DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   
Sbjct: 121 VVGDRDVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 181 SQIVEKFKHQFKTVAARKPKASRDKSSETFILGRHLKR 218


>gi|323526825|ref|YP_004228978.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1001]
 gi|323383827|gb|ADX55918.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1001]
          Length = 220

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/212 (39%), Positives = 117/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYA 66

Query: 86  ARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+DIL M+P+  V F + DF +      + + +G   
Sbjct: 67  RNKLAKGAQRDAEREGGIDGTIIALDILPMDPVADVHFIQGDFREDSVLVQLEELVGERQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L K  +K
Sbjct: 187 FKRQFKVVAARKPKASRDKSSETFILGKHLKK 218


>gi|187477433|ref|YP_785457.1| ribosomal RNA large subunit methyltransferase j [Bordetella avium
           197N]
 gi|123513953|sp|Q2KVR5|RLME_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115422019|emb|CAJ48541.1| ribosomal RNA large subunit methyltransferase j [Bordetella avium
           197N]
          Length = 219

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 127/208 (61%), Gaps = 3/208 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +  S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I E  ++L+    +VDLGS+PGSW
Sbjct: 3   KKKFSKDWIHQHINDPYVKLAQQKGYRARAAFKLIEILEVEKLLKKGDVVVDLGSAPGSW 62

Query: 82  SQVAARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
           SQV            + R++A+D+L MEPI GV+FF+ DF D +    + + +G +  DL
Sbjct: 63  SQVVRERLAGPGGVVDGRIIALDLLPMEPIAGVEFFQGDFRDDEVLHELERRVGNHAVDL 122

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   +C+ A  F+   L   G  +VK F G   + I+   K+
Sbjct: 123 VISDMAPNLSGVGVADSARIQHVCDLALEFSCAHLKPNGVLIVKAFHGSGFSQIVQSFKQ 182

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F++V+  KP ASR +S E FL+A+  +
Sbjct: 183 RFKRVVERKPKASRDKSSETFLVARDLK 210


>gi|307730492|ref|YP_003907716.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1003]
 gi|307585027|gb|ADN58425.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1003]
          Length = 220

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGSSPGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYA 66

Query: 86  ARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+DIL MEP+  V F + DF +      + + +G   
Sbjct: 67  RNKLAKGAQRDAEREGGIDGTIIALDILPMEPVADVHFIQGDFREDSVLSQLEEIVGERQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L K  +K
Sbjct: 187 FKRQFKVVAARKPKASRDKSSETFILGKHLKK 218


>gi|237748683|ref|ZP_04579163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes OXCC13]
 gi|229380045|gb|EEO30136.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes OXCC13]
          Length = 215

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S    ++ W+  H++DP+V+ AQ EG+RAR+AYKL++I+E   +++  + IVDLGS+PGS
Sbjct: 2   SKNKFNKSWMKNHLDDPFVKMAQKEGYRARAAYKLIEIDEDAHLIKPGQVIVDLGSTPGS 61

Query: 81  WSQVAARITGSNANN---TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNP 136
           WSQ   R  GS+  N     V+ +D+L MEPI GV FF+ DF +    + +   + G   
Sbjct: 62  WSQYVVRKLGSSGANQLNGTVIGLDLLPMEPIEGVHFFQGDFREESVLQELENLLQGRKA 121

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLVLSDMA    G    D  R   L E A  FA   L   G  LVK F G + NDIL   
Sbjct: 122 DLVLSDMAPNLSGIASADAARVEYLMELALDFAQAHLKPSGALLVKCFNGSSYNDILKNF 181

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F  V   KP ASR  S E+FLL +  R
Sbjct: 182 RETFVTVTPKKPKASRDYSSEIFLLGRQLR 211


>gi|298400875|gb|ADI81757.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 2   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 61

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              SN ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A  
Sbjct: 62  KNTSNTDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIQEFEGLKADLVVCDGAPD 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 122 VTGLHDIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVS 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 182 KPRSSRNSSIEAFVICQNYK 201


>gi|134295359|ref|YP_001119094.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
           vietnamiensis G4]
 gi|189040696|sp|A4JDA6|RLME_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|134138516|gb|ABO54259.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 220

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEPI  V F + DF + D    
Sbjct: 58  APGSWSQYARNKLAQGKQRDAQREGGIDGTIIALDLLPMEPIADVHFLQGDFREDDVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G P DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEGVLEGRPVDLVISDMAPNLSGVASADAARIEHICDLALEFAQNHLKPEGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217


>gi|156368067|ref|XP_001627518.1| predicted protein [Nematostella vectensis]
 gi|156214430|gb|EDO35418.1| predicted protein [Nematostella vectensis]
          Length = 316

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KLLQ+NE   +     ++VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLNEDFDLFSGVSKVVDLCAAPGSWSQVLSRKLI 64

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMA 144
                      ++VA+D+  M P+ GV   + D     +   I     G + DLV+ D A
Sbjct: 65  EEKQDEEGEKPKIVAVDLQAMAPLPGVIQIQGDITKTSTANQIISHFEGEHADLVICDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   ID      L  AA      +L  GG+F+ K F+G   + +   LK  F  V 
Sbjct: 125 PDVTGLHDIDEYIQGQLLLAALNITTHVLKPGGNFVAKIFRGKDVSLLYAQLKVFFPTVT 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR  S+E F++ +G+
Sbjct: 185 ICKPRSSRNSSIESFVVCQGY 205


>gi|145347186|ref|XP_001418056.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578284|gb|ABO96349.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 297

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI+E   I +  R +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDESFDIFRDVRHVVDLCAAPGSWSQVLSRKLY 64

Query: 91  --------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGGNPDLVLS 141
                         ++VAID+  M PI GV   + D   +D   E +    G + DL++ 
Sbjct: 65  LPALARGVEEEELPKIVAIDLQPMAPIEGVTTIQGDITSMDKVREVLSHFDGKHADLIVG 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  A    A  +L  GG F+ K F+G   + +   LK  F 
Sbjct: 125 DGAPDVTGLHDLDEFMQAQLILAGLTVATHILKPGGTFIAKIFRGKDISLLYSQLKIFFP 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           +V   KP +SR  S+E F++ +G+
Sbjct: 185 EVTCAKPKSSRNSSIEAFIVCQGY 208


>gi|167836218|ref|ZP_02463101.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           thailandensis MSMB43]
          Length = 220

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEPI  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGSRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREESVLHQ 117

Query: 128 IRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|53718994|ref|YP_107980.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|53725546|ref|YP_102539.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 23344]
 gi|124383467|ref|YP_001026576.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10229]
 gi|126438553|ref|YP_001058524.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 668]
 gi|126450179|ref|YP_001080139.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10247]
 gi|126453006|ref|YP_001065784.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106a]
 gi|167719064|ref|ZP_02402300.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei DM98]
 gi|167738062|ref|ZP_02410836.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 14]
 gi|167815246|ref|ZP_02446926.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 91]
 gi|167845199|ref|ZP_02470707.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei B7210]
 gi|167893751|ref|ZP_02481153.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 7894]
 gi|167902199|ref|ZP_02489404.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910441|ref|ZP_02497532.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 112]
 gi|167918467|ref|ZP_02505558.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei BCC215]
 gi|254178317|ref|ZP_04884972.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 10399]
 gi|254180203|ref|ZP_04886802.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1655]
 gi|254188378|ref|ZP_04894889.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254198319|ref|ZP_04904741.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei S13]
 gi|254205763|ref|ZP_04912115.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei JHU]
 gi|254261558|ref|ZP_04952612.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1710a]
 gi|254358836|ref|ZP_04975109.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei 2002721280]
 gi|81379953|sp|Q63V86|RLME_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81605295|sp|Q62L80|RLME_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459671|sp|Q3JTT5|RLME_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513524|sp|A3NTW3|RLME_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040695|sp|A3N853|RLME_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040700|sp|A1V319|RLME_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044089|sp|A3MIQ3|RLME_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044090|sp|A2S3Q7|RLME_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|52209408|emb|CAH35353.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|52428969|gb|AAU49562.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 23344]
 gi|124291487|gb|ABN00756.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10229]
 gi|126218046|gb|ABN81552.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 668]
 gi|126226648|gb|ABN90188.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106a]
 gi|126243049|gb|ABO06142.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10247]
 gi|147753206|gb|EDK60271.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei JHU]
 gi|148027963|gb|EDK85984.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei 2002721280]
 gi|157936057|gb|EDO91727.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699356|gb|EDP89326.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 10399]
 gi|169655060|gb|EDS87753.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei S13]
 gi|184210743|gb|EDU07786.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1655]
 gi|254220247|gb|EET09631.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1710a]
          Length = 220

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEP+  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              + I+   K  F+ V   KP ASR +S E F+L +  ++
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLKQ 218


>gi|55726462|emb|CAH90000.1| hypothetical protein [Pongo abelii]
          Length = 319

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+   A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCGGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|150950985|ref|XP_001387267.2| tRNA methyltransferase [Scheffersomyces stipitis CBS 6054]
 gi|149388260|gb|EAZ63244.2| tRNA methyltransferase [Pichia stipitis CBS 6054]
          Length = 301

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--I 88
           ++   D Y +RA+ +GWRARSA+KLLQ++++ QIL   +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRRAKEQGWRARSAFKLLQLHDEFQILHGLKRVVDLCAAPGSWSQVLSRELY 64

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
              N  + ++VA+D+  M PI GV   + D     +   I    GG P D V SD A   
Sbjct: 65  QKQNQPDAKIVAVDLQPMTPIDGVTCIQADITHPKTLHKILDIFGGEPADFVCSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A      +L  GG F+ K F+G   + +   L   F+KVI  K
Sbjct: 125 TGLHDLDEYIQAQLILSALQLTTCILKPGGTFVAKIFRGRDIDLLYSQLSYLFEKVICAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++  G+
Sbjct: 185 PRSSRGTSLEAFIVCIGY 202


>gi|83718666|ref|YP_443289.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
 gi|167621275|ref|ZP_02389906.1| FtsJ-like methyltransferase [Burkholderia thailandensis Bt4]
 gi|257139525|ref|ZP_05587787.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
 gi|123536418|sp|Q2SUW0|RLME_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83652491|gb|ABC36554.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
          Length = 220

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 118/220 (53%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEPI  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGRRRDAVREGGIDGTIIALDMLPMEPIADVHFIQGDFREETVLHQ 117

Query: 128 IRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217


>gi|298400869|gb|ADI81754.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400871|gb|ADI81755.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400873|gb|ADI81756.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400877|gb|ADI81758.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400879|gb|ADI81759.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400881|gb|ADI81760.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400885|gb|ADI81762.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400887|gb|ADI81763.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400889|gb|ADI81764.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400893|gb|ADI81766.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400897|gb|ADI81768.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400899|gb|ADI81769.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400901|gb|ADI81770.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400903|gb|ADI81771.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400905|gb|ADI81772.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400907|gb|ADI81773.1| cell division protein [Heliconius melpomene melpomene]
 gi|298400909|gb|ADI81774.1| cell division protein [Heliconius heurippa]
 gi|298400911|gb|ADI81775.1| cell division protein [Heliconius heurippa]
 gi|298400913|gb|ADI81776.1| cell division protein [Heliconius heurippa]
 gi|298400915|gb|ADI81777.1| cell division protein [Heliconius heurippa]
 gi|298400917|gb|ADI81778.1| cell division protein [Heliconius heurippa]
 gi|298400919|gb|ADI81779.1| cell division protein [Heliconius heurippa]
 gi|298400921|gb|ADI81780.1| cell division protein [Heliconius heurippa]
 gi|298400923|gb|ADI81781.1| cell division protein [Heliconius heurippa]
 gi|298400925|gb|ADI81782.1| cell division protein [Heliconius heurippa]
 gi|298400927|gb|ADI81783.1| cell division protein [Heliconius heurippa]
 gi|298400929|gb|ADI81784.1| cell division protein [Heliconius heurippa]
 gi|298400931|gb|ADI81785.1| cell division protein [Heliconius heurippa]
 gi|298400933|gb|ADI81786.1| cell division protein [Heliconius heurippa]
 gi|298400935|gb|ADI81787.1| cell division protein [Heliconius heurippa]
 gi|298400937|gb|ADI81788.1| cell division protein [Heliconius heurippa]
 gi|298400939|gb|ADI81789.1| cell division protein [Heliconius heurippa]
 gi|298400941|gb|ADI81790.1| cell division protein [Heliconius heurippa]
 gi|298400943|gb|ADI81791.1| cell division protein [Heliconius heurippa]
 gi|298400945|gb|ADI81792.1| cell division protein [Heliconius heurippa]
 gi|298400947|gb|ADI81793.1| cell division protein [Heliconius heurippa]
 gi|298400949|gb|ADI81794.1| cell division protein [Heliconius cydno cordula]
 gi|298400951|gb|ADI81795.1| cell division protein [Heliconius cydno cordula]
 gi|298400953|gb|ADI81796.1| cell division protein [Heliconius cydno cordula]
 gi|298400959|gb|ADI81799.1| cell division protein [Heliconius cydno cordula]
 gi|298400963|gb|ADI81801.1| cell division protein [Heliconius cydno cordula]
 gi|298400965|gb|ADI81802.1| cell division protein [Heliconius cydno cordula]
 gi|298400967|gb|ADI81803.1| cell division protein [Heliconius cydno cordula]
 gi|298400973|gb|ADI81806.1| cell division protein [Heliconius cydno cordula]
 gi|298400975|gb|ADI81807.1| cell division protein [Heliconius cydno cordula]
 gi|298400977|gb|ADI81808.1| cell division protein [Heliconius cydno cordula]
 gi|298400979|gb|ADI81809.1| cell division protein [Heliconius cydno cordula]
 gi|298400981|gb|ADI81810.1| cell division protein [Heliconius cydno cordula]
 gi|298400983|gb|ADI81811.1| cell division protein [Heliconius cydno cordula]
 gi|298400985|gb|ADI81812.1| cell division protein [Heliconius cydno cordula]
 gi|298400987|gb|ADI81813.1| cell division protein [Heliconius cydno cordula]
          Length = 273

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 2   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 61

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              SN ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A  
Sbjct: 62  QNTSNTDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPD 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 122 VTGLHDIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVS 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 182 KPRSSRNSSIEAFVICQNYK 201


>gi|258617564|gb|ACV83779.1| cell division-like protein [Heliconius melpomene]
          Length = 292

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 64

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              SN ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A  
Sbjct: 65  QNTSNTDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPD 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 125 VTGLHDIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVS 184

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 185 KPRSSRNSSIEAFVICQNYK 204


>gi|298400891|gb|ADI81765.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 2   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 61

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
               N ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A  
Sbjct: 62  QNTPNTDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPD 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 122 VTGLHDIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVS 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 182 KPRSSRNSSIEAFVICQNYK 201


>gi|171059499|ref|YP_001791848.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Leptothrix cholodnii
           SP-6]
 gi|226703309|sp|B1XXG3|RLME_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|170776944|gb|ACB35083.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Leptothrix cholodnii
           SP-6]
          Length = 232

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 11/219 (5%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N   +  ++ W N HI+D YV+ A  EG+R+R+AYK+ +I+E   +++  + +VDLG+ P
Sbjct: 4   NTKSKKVNKAWFNDHIHDTYVKLAHKEGYRSRAAYKIKEIDETCGLIRPGQVVVDLGAVP 63

Query: 79  GSWSQVAARITGSNAN----------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           G+WSQ   R                 N R++A+D+L  EP+ GV F + DF +      +
Sbjct: 64  GAWSQYVRRRFAPREAGVGGAAAGELNGRIIALDLLPFEPLEGVAFLQGDFCEEAVLAQL 123

Query: 129 RQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
              + G   D+VLSDMA    G    D  R  +L E A  FA   L   G  + K F G 
Sbjct: 124 VGLLDGRAVDVVLSDMAPNLSGVEVTDAARIANLVELALEFAQSHLKPQGALVCKVFHGS 183

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + ++   K+ F+ V  VKP ASR  S E FL+  G +
Sbjct: 184 GYSQLVDQFKRTFRVVKAVKPKASRDRSAETFLVGIGLK 222


>gi|126334424|ref|XP_001379067.1| PREDICTED: similar to cell division protein FtsJ [Monodelphis
           domestica]
          Length = 301

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 7/223 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           +R  T   ++R    +   WL RH+ DP+V+ A++E +R RSA+KLL+INEKHQI     
Sbjct: 70  QRFHTAISRHRGKTATEHLWLTRHLKDPFVKAAKVENYRCRSAFKLLEINEKHQIFHPGL 129

Query: 70  RIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKFFK-FDFLDLD 123
           R++D G++PG+WSQVA +         N++   V+ +D+L + P+ G  F    D  D  
Sbjct: 130 RVLDCGAAPGAWSQVAVQKVNAAGTDPNSSVGFVLGVDLLHIFPLEGAIFLCPADVTDSR 189

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +++ I++ + G   D++LSDMA    G R++DH   +S+C +   F   +L  GG FL K
Sbjct: 190 TFDKIQEQLPGQKADVILSDMAPNATGIRELDHQNLISMCLSLLNFTSSILLPGGTFLCK 249

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            + G   + +   L+K FQ V  +KP ASR ES E + LAK +
Sbjct: 250 FWDGSQRHLLQNRLEKEFQNVRTIKPKASRKESSETYFLAKSY 292


>gi|33596681|ref|NP_884324.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           parapertussis 12822]
 gi|33600444|ref|NP_888004.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           bronchiseptica RB50]
 gi|81427145|sp|Q7W8R6|RLME_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81431686|sp|Q7WMD3|RLME_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33568043|emb|CAE31956.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           bronchiseptica RB50]
 gi|33573382|emb|CAE37366.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           parapertussis]
          Length = 210

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 127/204 (62%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KLL+I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKLMRRGDIVVDLGSAPGSWSQVA 66

Query: 86  ARI--TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                    A + R++A+D+L MEP+ GV+F + DF +    E + + + G P DLV+SD
Sbjct: 67  RERLAGPGGAVDGRIIALDLLPMEPVAGVEFIQGDFREEAVLEQLARMVEGQPVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  FA   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGVADSARIQHVCELALEFACAHLKPNGALIVKAFHGSGFSQIVQSYKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|302779940|ref|XP_002971745.1| hypothetical protein SELMODRAFT_95614 [Selaginella moellendorffii]
 gi|300160877|gb|EFJ27494.1| hypothetical protein SELMODRAFT_95614 [Selaginella moellendorffii]
          Length = 297

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 7/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y ++A+ EGWRARSA+KLLQI+E+  ILQ  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFGILQGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 88  ---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDM 143
               +    +   +VAID+  M PI GV   + D     + E  I+   G   DLV+ D 
Sbjct: 65  VPSKSDKQDDRPLIVAIDLQPMAPIDGVVQIQGDITSARTAELVIQHFHGCQADLVVCDG 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L  G  F+ K F+G   + +   LK  F  V
Sbjct: 125 APDVTGLHDMDEFVQAQLILAALTIVTHVLRPGAKFVAKVFRGKDISLLYAQLKMFFTTV 184

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR  S+E F++ + ++
Sbjct: 185 TCTKPKSSRNSSIEAFVVCEDYQ 207


>gi|301791140|ref|XP_002930562.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
           [Ailuropoda melanoleuca]
          Length = 246

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T    ++   G+   WL RH+ DP+V+ A++E +R RSA+KLL+++E+H IL+   
Sbjct: 15  RRFHTAGSHSKGRTGAEHLWLTRHLKDPFVKAAKMESYRCRSAFKLLEVDERHGILRPGL 74

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFK-FDFLDLD 123
           R++D G++PG+WSQVA +   +   + R     V+ +D+L + P+ G  F    D  D  
Sbjct: 75  RVLDCGAAPGAWSQVAVQRVNAAGTDPRAPVGFVLGVDLLHISPLEGATFLCPADVTDPR 134

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + I++ + GG  D++LSDMA    G R +DH R + LC +    A  +L+ GG FL K
Sbjct: 135 TLQRIQELLPGGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDTAPHVLHPGGTFLCK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            + G  +      L   FQ    VKP ASR ES E++LLA  +++
Sbjct: 195 MWAGSQSLAYQKRLTGQFQNTRTVKPRASRKESSEVYLLATQYQR 239


>gi|213403496|ref|XP_002172520.1| tRNA 2'-O-ribose methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212000567|gb|EEB06227.1| tRNA 2'-O-ribose methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 280

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ+NE+  + +  RR+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDAYYRMAKEQGWRARSAFKLLQLNEQFDLFKGVRRVVDLCAAPGSWSQVLSRELV 64

Query: 91  SN---ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYP 146
            N   +    +V++D+  M P+ GV   + D    D+   I    G  P DLV+SD A  
Sbjct: 65  QNVPASERPTIVSVDLQPMAPLEGVCTLQLDITHPDTLPIILSHFGDEPADLVVSDGAPD 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      +  AA   A  +L  GG F+ K F+G   + +   L+  F+ V   
Sbjct: 125 VTGLHDLDEYIQAQILLAAMNLAACVLRPGGTFVAKIFRGRDVSLLYSQLRLLFKHVTCA 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SRA S+E F++ + F
Sbjct: 185 KPRSSRASSLEAFVVCQDF 203


>gi|298400955|gb|ADI81797.1| cell division protein [Heliconius cydno cordula]
 gi|298400957|gb|ADI81798.1| cell division protein [Heliconius cydno cordula]
 gi|298400961|gb|ADI81800.1| cell division protein [Heliconius cydno cordula]
 gi|298400969|gb|ADI81804.1| cell division protein [Heliconius cydno cordula]
 gi|298400971|gb|ADI81805.1| cell division protein [Heliconius cydno cordula]
          Length = 273

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 2   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 61

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              SN ++ ++VA+D+  M  + GVK  + D     +  E I++  G   DLV+ D A  
Sbjct: 62  QNTSNTDDVKIVAVDLQAMAALPGVKQIQGDITKNSTAHEIIKEFEGLKADLVVCDGAPD 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 122 VTGLHDIDEYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVS 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 182 KPRSSRNSSIEAFVICQNYK 201


>gi|298400883|gb|ADI81761.1| cell division protein [Heliconius melpomene melpomene]
          Length = 273

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 4/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R
Sbjct: 2   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLR 61

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
              SN ++ ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A  
Sbjct: 62  QNTSNTDDVKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPD 121

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+G     +   LK  F  V   
Sbjct: 122 VTGLHDIDEYVQSQLLLAALNITTHILKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVS 181

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR  S+E F++ + ++
Sbjct: 182 KPRSSRNSSIEAFVICQNYK 201


>gi|255712339|ref|XP_002552452.1| KLTH0C05214p [Lachancea thermotolerans]
 gi|238933831|emb|CAR22014.1| KLTH0C05214p [Lachancea thermotolerans]
          Length = 303

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 5/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EG+RARSA+KLLQ++E+   L +  R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRKAKEEGYRARSAFKLLQLDEQFHFLDNVTRVVDLCAAPGSWSQVLSRRLF 64

Query: 89  --TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAY 145
                N ++ R+VA+D+  M PI  V   + D     +   I     G   D V SD A 
Sbjct: 65  DDDTENNSSKRIVAVDLQPMFPIDNVTTIQADITHPKTLNKIMDLFEGEKADFVCSDGAP 124

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  +A      +L  GG F+ K F+G   + +   L   F++V+ 
Sbjct: 125 DVTGLHDLDEYVQQQLILSALQLTTCLLREGGVFVAKIFRGRDIDMLYSQLSFLFERVVC 184

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S+E F++  G+R
Sbjct: 185 AKPRSSRGTSLESFIVCLGYR 205


>gi|189239587|ref|XP_975693.2| PREDICTED: similar to Putative ribosomal RNA methyltransferase 1
           (rRNA (uridine-2-O-)-methyltransferase) [Tribolium
           castaneum]
          Length = 360

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 2/197 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D + ++A+ +GWRARSA+KLLQI+EK  IL+   + VDL ++PGSWSQV ++   
Sbjct: 5   SRDRRDIFYRKAKEQGWRARSAFKLLQIDEKFNILEGVTKAVDLCAAPGSWSQVLSQTPQ 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIG 149
            N +  ++VA+D+  M P+ GV   + D  +  + E I     G + DLV+ D A    G
Sbjct: 65  KNKD-VKIVAVDLQPMSPLPGVIQLQGDITEYKTAEAIISHFEGDHADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L   A      +L  GG F+ K F+    + +   L   F+ VI VKP 
Sbjct: 124 LHCIDIYIQAQLLLGALHITCNVLKPGGTFVAKIFRAKDCDLLTQQLLMLFEDVITVKPT 183

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ + F+
Sbjct: 184 SSRNSSIEAFVVCRKFK 200


>gi|161525194|ref|YP_001580206.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
           ATCC 17616]
 gi|189350067|ref|YP_001945695.1| cell division protein methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|226703287|sp|A9ACL8|RLME_BURM1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160342623|gb|ABX15709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
           ATCC 17616]
 gi|189334089|dbj|BAG43159.1| cell division protein methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 220

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQ 117

Query: 128 IRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEAVLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217


>gi|293606999|ref|ZP_06689343.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
           piechaudii ATCC 43553]
 gi|292814596|gb|EFF73733.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
           piechaudii ATCC 43553]
          Length = 210

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 126/204 (61%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++++    ++DLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLIEILDTEKLMRRGDLVIDLGSAPGSWSQVA 66

Query: 86  ARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                      + R++A+D+L MEP+ GV+F + DF D D  + +   +G    DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRDDDVLKQLEDMVGSRAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  F+   L   G  +VK F G   + I+   K+HF++
Sbjct: 127 MAPNLSGVGSADSARIQHVCELAMEFSRAHLKPNGALIVKAFHGSGFSQIVQTFKQHFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|157117994|ref|XP_001658956.1| ribosomal RNA methyltransferase [Aedes aegypti]
 gi|108875892|gb|EAT40117.1| ribosomal RNA methyltransferase [Aedes aegypti]
          Length = 306

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 6/202 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KL+ I+E   I +   R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLIHIDEVFNIFEGVTRAVDLCAAPGSWSQVLSKKLY 64

Query: 91  SN----ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSDMA 144
            N    A++ +++A+D+  M P+ GV   + D   L +   I +  G      LV+ D A
Sbjct: 65  ENRDKEADDVKIIAVDLQAMAPLPGVTQLQGDITKLSTANAIIEQFGNGQKAQLVICDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   ID      L  AA      +L  GG F+ K F+G  T  +   L+  F+KV 
Sbjct: 125 PDVTGLHDIDEYIQSQLLLAALNITTHVLTEGGTFIAKIFRGKDTTLLYSQLRIFFEKVS 184

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S+E F++ + ++
Sbjct: 185 IAKPASSRNSSIEAFVVCQSYK 206


>gi|313201615|ref|YP_004040273.1| ribosomal RNA methyltransferase rrmj/ftsj [Methylovorus sp. MP688]
 gi|312440931|gb|ADQ85037.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. MP688]
          Length = 197

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H+ND +V+RAQ +G+RAR+AYKL++I++K Q+++    IVDLG++PGSWSQVA +  
Sbjct: 1   MQEHVNDEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGSWSQVAVQRL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTI 148
                  R++A+D+L+M  I GV F + DF +      + + +   P DLV++DMA    
Sbjct: 61  K---GQGRIIALDLLEMAAIPGVDFIQGDFREDAVLLQLEEKLNNRPIDLVIADMAPNIS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L E A  F+L+ L  GG+FLVK F G   ++I+  ++  F KV+  KP
Sbjct: 118 GISSVDQANAAYLTELALEFSLKWLKPGGNFLVKVFIGSGFDEIMKTMRLGFDKVVTRKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR  S E++LL    +
Sbjct: 178 KASRDRSSEVYLLGLKRK 195


>gi|148244491|ref|YP_001219185.1| cell division protein methyltransferase FtsJ [Candidatus
           Vesicomyosocius okutanii HA]
 gi|158514271|sp|A5CX75|RLME_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|146326318|dbj|BAF61461.1| cell division protein methyltransferase FtsJ [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 210

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S + SSR W+  HIND +V+ A+  G+R+R+ YKL+++  K + ++   +++DLG++PGS
Sbjct: 2   SKKDSSRRWMREHINDKFVKNAKKAGYRSRAVYKLIEVINKEKFIKPGNKVIDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLV 139
           WSQ+A +  G +    +V+A DIL+++PI G+ F + DF +   +E +    +    ++V
Sbjct: 62  WSQMAIKAVGKSG---QVIANDILNIKPIDGIDFLQGDFTENSVYEALLNLTMNQKVNVV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSD+A    G   +D  ++M LCE A   A++ L   G F VK FQG   +  +   + +
Sbjct: 119 LSDIAPNISGQPSVDIPKSMYLCELALDIAIKSLTPSGYFFVKVFQGDGFDMFVESCRTY 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  V   KP ASR  S E++LLA   +
Sbjct: 179 FSYVTIHKPKASRTRSKEVYLLANKLK 205


>gi|167582305|ref|ZP_02375179.1| FtsJ-like methyltransferase [Burkholderia thailandensis TXDOH]
          Length = 220

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 118/220 (53%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEPI  V F + DF +      
Sbjct: 58  APGSWSQYARNKLAQGRRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREEAVLHQ 117

Query: 128 IRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           + + + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217


>gi|290974158|ref|XP_002669813.1| predicted protein [Naegleria gruberi]
 gi|284083365|gb|EFC37069.1| predicted protein [Naegleria gruberi]
          Length = 303

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 6/197 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D + ++A+ EGWRARSA+KLLQ++E+  I ++ +R VDL ++PGSWSQV  +   
Sbjct: 5   SREKRDIFYRKAKQEGWRARSAFKLLQVDEEFNIFENVKRAVDLCAAPGSWSQVLQQ--- 61

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIG 149
               +  +V++D+ +M P+ GV   + D     + E I     G    LV+ D A    G
Sbjct: 62  --EEDAIIVSVDLQEMAPLEGVIEIQGDITSEKTAEEIVHHFKGKKAQLVVCDGAPDVTG 119

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID    + L  AA      +L  GG F+ K F+G     +       F++V   KP 
Sbjct: 120 MHDIDEYIQLQLILAALNITSHVLEEGGSFVSKIFRGKDITLLYSQCSIFFERVYCAKPK 179

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ KGF+
Sbjct: 180 SSRNSSLESFVVCKGFK 196


>gi|325524578|gb|EGD02605.1| ribosomal RNA large subunit methyltransferase E [Burkholderia sp.
           TJI49]
          Length = 220

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IV LG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVALGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G P DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEDVLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217


>gi|88606902|ref|YP_505099.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
           phagocytophilum HZ]
 gi|123495326|sp|Q2GKK2|RLME_ANAPZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88597965|gb|ABD43435.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
           phagocytophilum HZ]
          Length = 247

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/214 (41%), Positives = 129/214 (60%), Gaps = 3/214 (1%)

Query: 15  QKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
            +VK  +  + SS +W+ R +ND YV  A+ EG+R+RSAYKL++IN+K +ILQ  R ++D
Sbjct: 34  VRVKTAKGRKISSTNWIRRQVNDQYVSLAKKEGYRSRSAYKLIEINDKFKILQRGRFVLD 93

Query: 74  LGSSPGSWSQVAARITGS-NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           LGSSPG W+QVA++ T   ++    VVA+DI  M+ I  V F + D  D D      +  
Sbjct: 94  LGSSPGGWAQVASKNTAIIDSTEPTVVAVDIQSMKDIHNVSFVQCDI-DSDHDLLNEKLS 152

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   D+VLSDMA  + GHR++DH   ++LCE A   ALE LN  G F+ K   G    + 
Sbjct: 153 GRKFDVVLSDMAPKSCGHRQVDHANIINLCELARDIALEYLNPNGSFVTKLLHGEYEQEF 212

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +  HF  V + KP +SR +S E++L+A  F+
Sbjct: 213 RRSIMTHFGVVSYFKPKSSRKDSSEIYLVALKFK 246


>gi|260220960|emb|CBA29048.1| Ribosomal RNA large subunit methyltransferase J [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 205

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 114/203 (56%), Gaps = 6/203 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           ++ HINDPYV+ A  EG+RAR+AYKL +I+E   +++  + +VDLG +PG+WSQ   R  
Sbjct: 1   MHDHINDPYVKLANKEGYRARAAYKLKEIDEALHLVKPGQLVVDLGCTPGAWSQYLRRRM 60

Query: 90  GSNA-----NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDM 143
                     N  ++ +D+L MEPI GV F + DF ++++   +  A+GG   DLV+SDM
Sbjct: 61  SPQGAAVGEMNGTIIGLDLLPMEPIEGVTFIQGDFREVETLAKLEAALGGQKADLVVSDM 120

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D  R   L E A  FA   +   G  + K F GG+ N+++   K+ F  V
Sbjct: 121 APNLSGISSADAARVEYLVELAIEFAQNHMKPQGALVAKVFHGGSYNEVVQRFKQAFVTV 180

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
             +KP ASR  S E FL+  G +
Sbjct: 181 KPLKPKASRDRSSETFLIGLGLK 203


>gi|255020638|ref|ZP_05292700.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
 gi|254969874|gb|EET27374.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
          Length = 207

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/205 (41%), Positives = 118/205 (57%), Gaps = 3/205 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL  H  DP+VQRA  EG+R+R++YKLL+I EK  +L+  +R++DLG++PG W
Sbjct: 3   RSKSSKQWLREHFQDPFVQRAAREGYRSRASYKLLEIQEKDGLLRRGQRVLDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           +QVAA I GS     R+VA+D L M+P+ G    + D  D       R A     DL+LS
Sbjct: 63  TQVAAAIVGSEG---RIVAVDRLAMDPVPGALVIQGDIYDEAVIAQCRAAFPEGVDLILS 119

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R ++LCE A   A E L  GG  L+K F G    ++   L+  F+
Sbjct: 120 DMAPNLSGIASADQARAVALCELALDLAREWLVPGGKLLMKVFMGAGAQELRRELQGSFR 179

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +++  KP ASRA S E + LA  +R
Sbjct: 180 RIVVRKPEASRARSAEQYWLALDYR 204


>gi|153871222|ref|ZP_02000449.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Beggiatoa sp. PS]
 gi|152072314|gb|EDN69553.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Beggiatoa sp. PS]
          Length = 212

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 120/209 (57%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           ++     +RDW   H N+ YV++A +EG+R+R+ YKL +I+ + ++ +    IVDLG++P
Sbjct: 2   SKKRISKTRDWHKEHSNNQYVKQANIEGYRSRAVYKLTEIDARDRLFRPGMTIVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPD 137
           G WSQ  AR         ++ A+DIL ++P+  V F + DF +    +  +        D
Sbjct: 62  GGWSQWIARRFEK---QVKLFALDILPIKPLPDVTFIQGDFREQTVLDTLLNHLDKKKVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LV+SDMA    G + ID  R + L E A  FAL++L   G FL K FQG   +     LK
Sbjct: 119 LVISDMAPNISGIKAIDQPRIIELAELARDFALDVLITNGHFLTKVFQGEDFDIFTKSLK 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            HF++V+  KP ASR++S E+++LAK  +
Sbjct: 179 SHFKQVVIRKPTASRSQSSEVYVLAKQLK 207


>gi|321474858|gb|EFX85822.1| hypothetical protein DAPPUDRAFT_309098 [Daphnia pulex]
          Length = 302

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KLLQI+E+ +I +  +  VDL ++PGSWSQV  R   
Sbjct: 5   SKDKRDVYYRLAKEEGWRARSAFKLLQIDEEFRIFEGVKNAVDLCAAPGSWSQVLTRKLH 64

Query: 91  SNANN--TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPT 147
           +   N   ++VA+D+  M P+ GV   + D   L + E I     G   DLV+ D A   
Sbjct: 65  NKDENVSAKIVAVDLQAMAPLPGVIQIQGDITQLSTAEKIISYFEGEKADLVVCDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  AA      +L  GG F+ K F+G     +   L+  F KV   K
Sbjct: 125 TGLHDIDEYVQAQLLLAALNITTHVLKDGGIFVAKIFRGRDITLLYSQLRIFFPKVTVAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P++SR  S+E F++ + +
Sbjct: 185 PMSSRNSSIEAFVVCQNY 202


>gi|221201968|ref|ZP_03575004.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2M]
 gi|221204902|ref|ZP_03577919.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2]
 gi|221213879|ref|ZP_03586852.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD1]
 gi|221166056|gb|EED98529.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD1]
 gi|221175759|gb|EEE08189.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2]
 gi|221178051|gb|EEE10462.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2M]
          Length = 220

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 118/220 (53%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITGSNANNTRV---------VAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A            V         VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDTVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHR 117

Query: 128 IRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G
Sbjct: 118 LEAVLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217


>gi|289662669|ref|ZP_06484250.1| cell division protein FtsJ [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669632|ref|ZP_06490707.1| cell division protein FtsJ [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 210

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRK---SMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEALLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E++ L +G R
Sbjct: 180 YEKVTIRKPAASRKRSPEVYALGQGKR 206


>gi|21242480|ref|NP_642062.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|78047320|ref|YP_363495.1| cell division protein FtsJ [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|294626637|ref|ZP_06705234.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665640|ref|ZP_06730917.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|325928791|ref|ZP_08189960.1| 23S rRNA Um-2552 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
 gi|81803099|sp|Q8PLQ8|RLME_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123585340|sp|Q3BUR8|RLME_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|21107928|gb|AAM36598.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|78035750|emb|CAJ23441.1| cell division protein FtsJ [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|292599057|gb|EFF43197.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604586|gb|EFF47960.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|325540872|gb|EGD12445.1| 23S rRNA Um-2552 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
          Length = 210

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRK---SMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E++ L +G R
Sbjct: 180 YEKVTIRKPAASRKRSPEVYALGQGKR 206


>gi|281349747|gb|EFB25331.1| hypothetical protein PANDA_021048 [Ailuropoda melanoleuca]
          Length = 235

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T    ++   G+   WL RH+ DP+V+ A++E +R RSA+KLL+++E+H IL+   
Sbjct: 13  RRFHTAGSHSKGRTGAEHLWLTRHLKDPFVKAAKMESYRCRSAFKLLEVDERHGILRPGL 72

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFK-FDFLDLD 123
           R++D G++PG+WSQVA +   +   + R     V+ +D+L + P+ G  F    D  D  
Sbjct: 73  RVLDCGAAPGAWSQVAVQRVNAAGTDPRAPVGFVLGVDLLHISPLEGATFLCPADVTDPR 132

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + I++ + GG  D++LSDMA    G R +DH R + LC +    A  +L+ GG FL K
Sbjct: 133 TLQRIQELLPGGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDTAPHVLHPGGTFLCK 192

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            + G  +      L   FQ    VKP ASR ES E++LLA  +
Sbjct: 193 MWAGSQSLAYQKRLTGQFQNTRTVKPRASRKESSEVYLLATQY 235


>gi|317405975|gb|EFV86253.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
           xylosoxidans C54]
          Length = 210

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++L+    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKMAQQKGYRARAAFKLIEILDTEKLLRRGDLVVDLGSAPGSWSQVA 66

Query: 86  ARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                      + R++A+D+L MEP+ GV+F + DF + D  + +   +G    DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDMLPMEPVAGVEFIQGDFREDDILKQLEDMVGSRAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  F+L  L   G  +VK F G   + I+   K+HF++
Sbjct: 127 MAPNLSGVGIADAARIQHVCELAMEFSLAHLKPNGALIVKAFHGTGFSQIVESYKQHFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|296158196|ref|ZP_06841028.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. Ch1-1]
 gi|295891532|gb|EFG71318.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ +++++ + IVDLGS+PGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRAGQVIVDLGSTPGSWSQYA 66

Query: 86  ARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+D+L MEPI  V F + DF +      + + +G   
Sbjct: 67  RNKLAKGAQRDAEREGGIDGTIIALDLLPMEPIADVHFIQGDFREDSVIAQLEELVGERQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K  F+ V   KP ASR +S E F+L K  ++
Sbjct: 187 FKHQFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|312795597|ref|YP_004028519.1| 23S rRNA Um2552 2'-O-methyltransferase [Burkholderia rhizoxinica
           HKI 454]
 gi|312167372|emb|CBW74375.1| 23S rRNA Um2552 2'-O-methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 228

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/217 (39%), Positives = 119/217 (54%), Gaps = 11/217 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ +G+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 12  AKNRFNQS----WLHDHINDPYVKLAQRDGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 67

Query: 77  SPGSWSQVAARI------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ A           S   +  ++A+D+L MEPI  V F + DF D      +  
Sbjct: 68  APGSWSQYARNKLAAGSHRASGGIDGTIIALDMLPMEPIADVTFIQGDFRDDAVLAQLEA 127

Query: 131 AIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
           A+ G   DLV+SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   
Sbjct: 128 AVEGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLTSQGALLVKCFHGSGY 187

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 188 SQIVERFKHQFRSVAARKPKASRDKSSETFILGRMLK 224


>gi|285017954|ref|YP_003375665.1| cell division protein ftsj (rrna (uridine) methyltransferase
           activity ) [Xanthomonas albilineans GPE PC73]
 gi|283473172|emb|CBA15678.1| probable cell division protein ftsj (rrna (uridine)
           methyltransferase activity ) [Xanthomonas albilineans]
          Length = 219

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 124/216 (57%), Gaps = 4/216 (1%)

Query: 12  GLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI 71
            L+ +    +   SS+ WL  H  DP+V++AQ EG R+R+AYKL ++ ++ ++L+ +  +
Sbjct: 3   ALSVRPSMATRSKSSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPDMVV 62

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG++PG WSQ   +   S  +  RV+A+DIL+M P+ GV+F   DF +      +   
Sbjct: 63  VDLGAAPGGWSQQVRK---SMGDRGRVLALDILEMPPLAGVEFLHGDFREEAVLSQLEAM 119

Query: 132 IGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           +G    DLVLSDMA    G   +D  R M L E A  FA   L   G FL+K FQG   +
Sbjct: 120 LGETAVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMAFADSHLKPNGVFLIKLFQGVGFD 179

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           D +  +++ ++KV   KP ASR  S E++ L +G R
Sbjct: 180 DYIRAMRRRYEKVTIRKPAASRKRSPEVYALGQGKR 215


>gi|170042115|ref|XP_001848783.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Culex
           quinquefasciatus]
 gi|167865651|gb|EDS29034.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Culex
           quinquefasciatus]
          Length = 306

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 6/202 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KL+ ++E   I +   R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRMAKEEGWRARSAFKLIHLDENFNIFEGVTRAVDLCAAPGSWSQVLSKKLY 64

Query: 89  --TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMA 144
                + ++ +++A+D+  M P+ GV   + D   L + + I +  G +    LV+ D A
Sbjct: 65  ESRDKDKDDVKIIAVDLQAMAPLPGVTQLQGDITKLSTAQAIIEHFGNDQRAQLVICDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   ID      L  AA      +L IGG F+ K F+G  T  +   L+  F+KV 
Sbjct: 125 PDVTGLHDIDEYIQSQLLLAALNITTHVLTIGGTFIAKIFRGHDTTLLYSQLRIFFEKVS 184

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S+E F++ + ++
Sbjct: 185 IAKPASSRNSSIEAFVVCQQYK 206


>gi|21231165|ref|NP_637082.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768827|ref|YP_243589.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112804|gb|AAM41006.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574159|gb|AAY49569.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 212

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DP+V++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 5   SRSKSSQRWLKEHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 64

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S   + RVVA+DIL+M P+ GV+F   DF +          +G  P DLV
Sbjct: 65  WSQQVRK---SMGASGRVVALDILEMPPLAGVEFLHGDFREQAVLSEFEAMLGDVPVDLV 121

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L +GG FL+K FQG  ++D +  L++ 
Sbjct: 122 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKVGGAFLIKLFQGVGSDDYIRELRRR 181

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E+++L +G R
Sbjct: 182 YEKVTIRKPAASRKRSAEVYVLGQGKR 208


>gi|328675584|gb|AEB28259.1| Cell division protein ftsJ / Ribosomal RNA large subunit
           methyltransferase J [Francisella cf. novicida 3523]
          Length = 206

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   D+++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFCSDDTYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L++  
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANMNLNKNGSFVAKVFQGEGSDEYLKLVRDS 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A GF+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATGFK 205


>gi|311108149|ref|YP_003981002.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762838|gb|ADP18287.1| FtsJ-like methyltransferase family protein [Achromobacter
           xylosoxidans A8]
          Length = 210

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 81/204 (39%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S+DW+++HINDPYV+ AQ +G+RAR+A+KL++I +  ++++    +VDLGS+PGSWSQVA
Sbjct: 7   SKDWIHQHINDPYVKLAQQKGYRARAAFKLIEILDTEKLMRRGDLVVDLGSAPGSWSQVA 66

Query: 86  ARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
                      + R++A+D+L MEP+ GV+F + DF D +  + +   +G    DLV+SD
Sbjct: 67  RERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRDDEVLKQLEDMVGSRAVDLVISD 126

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G    D  R   +CE A  F+   L   G  +VK F G   + I+   K+ F++
Sbjct: 127 MAPNLSGVGIADSARIQHVCELAMEFSCAHLKPNGVLIVKAFHGSGFSQIVESFKQRFKR 186

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V+  KP ASR +S E FL+A+  +
Sbjct: 187 VVERKPKASRDKSSETFLVARDLK 210


>gi|167587473|ref|ZP_02379861.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ubonensis
           Bu]
          Length = 220

 Score =  235 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 120/220 (54%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQH----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G P DLV+SDMA    G    D  R   +C+ A  F+   L   G  LVK F G
Sbjct: 118 LEAVLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFSQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKQQFKIVAPRKPKASRDKSSETFILGRHLK 217


>gi|187924839|ref|YP_001896481.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
           phytofirmans PsJN]
 gi|226703289|sp|B2SZR9|RLME_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|187716033|gb|ACD17257.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
           phytofirmans PsJN]
          Length = 220

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/212 (39%), Positives = 115/212 (54%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGS PGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDRLIRPGQVIVDLGSVPGSWSQYA 66

Query: 86  ARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+DIL MEPI  V F + DF +      + + +G   
Sbjct: 67  RNKLAKGAQRDAEREGGIDGTIIALDILPMEPIADVTFIQGDFREDTVLGQLEELVGERQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKQDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K  F+ V   KP ASR +S E F+L K  ++
Sbjct: 187 FKHQFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|188991942|ref|YP_001903952.1| Cell division protein FtsJ [Xanthomonas campestris pv. campestris
           str. B100]
 gi|83305668|sp|Q4UTQ4|RLME_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83305669|sp|Q8P9Y1|RLME_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705321|sp|B0RTZ3|RLME_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|167733702|emb|CAP51907.1| Cell division protein FtsJ [Xanthomonas campestris pv. campestris]
          Length = 210

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DP+V++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S   + RVVA+DIL+M P+ GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRK---SMGASGRVVALDILEMPPLAGVEFLHGDFREQAVLSEFEAMLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L +GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKVGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E+++L +G R
Sbjct: 180 YEKVTIRKPAASRKRSAEVYVLGQGKR 206


>gi|302819760|ref|XP_002991549.1| hypothetical protein SELMODRAFT_133851 [Selaginella moellendorffii]
 gi|300140582|gb|EFJ07303.1| hypothetical protein SELMODRAFT_133851 [Selaginella moellendorffii]
          Length = 302

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI+E+  ILQ  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFGILQGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 91  -----------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDL 138
                         +   +VAID+  M PI GV   + D     + E  I+   G   DL
Sbjct: 65  VPSKNLSLCSSRQDDRPLIVAIDLQPMAPIDGVVQIQGDITSARTAELVIQHFHGCKADL 124

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+ D A    G   +D      L  AA      +L  G  F+ K F+G   + +   LK 
Sbjct: 125 VVCDGAPDVTGLHDMDEFVQAQLILAALTIVTHVLRPGAKFVAKVFRGKDISLLYAQLKM 184

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP +SR  S+E F++ + ++
Sbjct: 185 FFTTVTCTKPKSSRNSSIEAFVVCEDYQ 212


>gi|241667177|ref|ZP_04754755.1| ribosomal RNA large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254875729|ref|ZP_05248439.1| ribosomal large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254841750|gb|EET20164.1| ribosomal large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 206

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 128/207 (61%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   +++ W+  H +D YV +A   G+R+R+++K+L+I +K+ + + N  IVDLG++PG 
Sbjct: 2   SKGSTTKKWIQDHTSDYYVLQANKLGYRSRASFKILEIQDKYNLFKQNMFIVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WS+   +  G+N    +++A+D+L+M PI GV+F + DF   +++E + Q I     D V
Sbjct: 62  WSEQVVKFIGNNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYERLNQLINDKKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  R++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQARSIYLLELALDFATTNLNRNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV   KP +SR +S E +++A GF+
Sbjct: 179 FNKVTQFKPKSSRPKSREFYVVATGFK 205


>gi|91784538|ref|YP_559744.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia xenovorans LB400]
 gi|122970262|sp|Q13W47|RLME_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91688492|gb|ABE31692.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 220

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/212 (38%), Positives = 118/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ +++++ + IVDLGS+PGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRAGQVIVDLGSTPGSWSQYA 66

Query: 86  ARITG---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+D+L MEPI  V F + DF +      + + +G   
Sbjct: 67  RNKLAKGAQRDAEREGGIDGTIIALDLLPMEPIADVHFIQGDFREDSVIAQLEELVGERQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L K  ++
Sbjct: 187 FKRQFRVVAARKPKASRDKSSETFILGKHLKR 218


>gi|170695458|ref|ZP_02886603.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia graminis
           C4D1M]
 gi|170139649|gb|EDT07832.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia graminis
           C4D1M]
          Length = 220

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 81/212 (38%), Positives = 117/212 (55%), Gaps = 10/212 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +  WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLGS+PGSWSQ A
Sbjct: 7   NTAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSTPGSWSQYA 66

Query: 86  ARITGSN---------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
                             +  ++A+D+L MEP+  V F + DF +      + + +G   
Sbjct: 67  RNKLAKGSQRDAERQGGIDGTIIALDLLPMEPVADVHFIQGDFREEAVLGQLEELVGERQ 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLV+SDMA    G    D  R   LC+ A  F+   L   G  LVK F G   + I+  
Sbjct: 127 VDLVISDMAPNLSGVALADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEK 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K+ F+ V   KP ASR +S E F+L K  ++
Sbjct: 187 FKRQFKVVAARKPKASRDKSSETFILGKHLKR 218


>gi|58582573|ref|YP_201589.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427167|gb|AAW76204.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 224

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++A+ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 17  SRSKSSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 76

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLV
Sbjct: 77  WSQQVRK---SMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLV 133

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 134 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRR 193

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E++ L +G R
Sbjct: 194 YEKVTIRKPAASRKRSPEVYALGQGKR 220


>gi|84624459|ref|YP_451831.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575911|ref|YP_001912840.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|83305670|sp|Q5GYL7|RLME_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123521583|sp|Q2P1M0|RLME_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705322|sp|B2SUB8|RLME_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84368399|dbj|BAE69557.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520363|gb|ACD58308.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 210

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++A+ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S  ++ RVVA+DILDM  + GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRK---SMGDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E++ L +G R
Sbjct: 180 YEKVTIRKPAASRKRSPEVYALGQGKR 206


>gi|19115658|ref|NP_594746.1| tRNA 2'-O-ribose methyltransferase (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|9910977|sp|O36015|YEK3_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase C4F10.03c;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2656003|emb|CAB11724.1| tRNA 2'-O-ribose methyltransferase (predicted) [Schizosaccharomyces
           pombe]
          Length = 285

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ+NE+  + +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLSRELL 64

Query: 91  SNANNT-------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSD 142
            N + +        +VA+D+  M PI GV   + D    ++   I    G  P DLV+SD
Sbjct: 65  KNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      +  AA   A+ +L  GG F+ K F+G   + +   L+  F+K
Sbjct: 125 GAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP +SRA S+E F++ + F
Sbjct: 185 VSCAKPRSSRASSIESFVVCEDF 207


>gi|324513843|gb|ADY45670.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 370

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 7/202 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KL+QI+++  I +   R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLMQIDDEFNIFEGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDM 143
                    +  R+VA+D+  M P+ GV   + D  +  + E  I    G   DLV+ D 
Sbjct: 65  FGEKDEQKRSEVRIVAVDLQPMSPLPGVIQLQGDITESSTAESIISHFEGSKADLVVCDG 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L   G F+ K F+    + +   LK  F++V
Sbjct: 125 APDVTGLHSLDEYMQSQLILAALNITTFVLKESGTFIAKIFRAKNVSLLYAQLKFFFEEV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SR  S E F++ K F
Sbjct: 185 YCAKPRSSRQSSCEAFVVCKRF 206


>gi|330816267|ref|YP_004359972.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
           BSR3]
 gi|327368660|gb|AEA60016.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
           BSR3]
          Length = 220

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+++ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDDQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  ++A+D+L MEPI  V F + DF + +    
Sbjct: 58  APGSWSQYARNKLAQGKQRDSQREGGIDGIIIALDMLPMEPIADVHFIQGDFREDEVLRQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  F+   L   G  LVK F G
Sbjct: 118 LEDVLEGRAVDLVISDMAPNLSGVALADAARIEHVCDLALEFSQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFRTVAPRKPKASRDKSSETFILGRHLK 217


>gi|238026783|ref|YP_002911014.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia glumae
           BGR1]
 gi|237875977|gb|ACR28310.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia glumae
           BGR1]
          Length = 220

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KNR  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNRFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARI---------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
           +PGSWSQ A                  +  +VA+D+L MEP+  V F + DF +      
Sbjct: 58  APGSWSQYARNKLALGKNRDAQREGGIDGMIVALDMLPMEPVADVHFIQGDFREDAVLHQ 117

Query: 128 IRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   + G   DLV+SDMA    G    D  R   +C+ A  F+   L   G  LVK F G
Sbjct: 118 LEALLDGRVVDLVISDMAPNLSGVASADAARIEHVCDLALEFSQNHLKPDGALLVKCFHG 177

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + I+   K  F+ V   KP ASR +S E F+L +  +
Sbjct: 178 SGYSQIVEKFKHQFRTVAPRKPKASRDKSSETFILGRHLK 217


>gi|149755358|ref|XP_001492181.1| PREDICTED: similar to FtsJ homolog 2 [Equus caballus]
          Length = 264

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 128/215 (59%), Gaps = 7/215 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +   G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G++PG
Sbjct: 43  KGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 102

Query: 80  SWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKFFK-FDFLDLDSWEFIRQAI- 132
           +WSQVA +          A    V+ +D+L + P+ G  F    D  D  +++ IR+ + 
Sbjct: 103 AWSQVAVQRVNAAGTDPGAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFQRIRELLP 162

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  D++LSDMA    G R +DH R +SLC +    A + L  GG FL KT+ G  ++ +
Sbjct: 163 GGRADVILSDMAPNATGIRGLDHDRLISLCLSLLDLAPDTLCPGGTFLCKTWAGSQSHRL 222

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L + FQ    VKP ASR ES E++ LA  +R+
Sbjct: 223 QKRLTEEFQNTKTVKPEASRKESSEVYFLATQYRR 257


>gi|89900795|ref|YP_523266.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodoferax ferrireducens
           T118]
 gi|122479248|sp|Q21WW8|RLME_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|89345532|gb|ABD69735.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodoferax ferrireducens
           T118]
          Length = 224

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 20  RSCQGSS---RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +S   SS   R WLN H+ND YV+ A+LEG+RAR+AYKL +I+E   +++  + +VDLGS
Sbjct: 2   KSQTKSSKVNRAWLNDHVNDTYVKLAKLEGYRARAAYKLKEIDETLGLIKPGQLVVDLGS 61

Query: 77  SPGSWSQVAARITGSNAN----------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           +PG+WSQ   R                 N  ++A+DIL MEP+ GV F + DF + D   
Sbjct: 62  TPGAWSQYVRRKMSPKTATGGGAAVGALNGTIIALDILPMEPVEGVVFLQGDFRESDVLL 121

Query: 127 FIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +   + G   DLVLSDMA    G    D  R  +L E A  FA   +   G  + K F 
Sbjct: 122 QLEAEMKGRQADLVLSDMAPNLSGIDSADAARIENLVELALEFAQNHMKPEGALVAKVFH 181

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G + + ++   K+ F  V  +KP ASR +S E FL+  G +
Sbjct: 182 GASYDPLVKRFKETFLLVKRIKPKASRDKSSETFLVGLGLK 222


>gi|237745683|ref|ZP_04576163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes HOxBLS]
 gi|229377034|gb|EEO27125.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
           formigenes HOxBLS]
          Length = 215

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 4/210 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S    ++ W+  H++DP+V+ AQ EG+RAR+ YKL +I+E  ++++  + IVDLG +PGS
Sbjct: 2   SKNKFNKSWMRNHLDDPFVKLAQKEGYRARAVYKLSEIDENAKLVRPGQVIVDLGCAPGS 61

Query: 81  WSQVAARITGSNANN---TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNP 136
           WSQ  AR  G    +     +V +DIL MEP+ GV F + DF +      +   + G   
Sbjct: 62  WSQYIARKLGGQGGHPVNGTIVGLDILPMEPVEGVHFLQGDFREESVLHELEALLEGRQV 121

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLVLSDMA    G    D  R   L + A  FA   L   G  LVK F G T N+IL   
Sbjct: 122 DLVLSDMAPNLSGIASADAARVEYLMDLALEFAQAHLKPSGSLLVKCFNGSTYNEILKKF 181

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F  V  VKP ASR  S EMFLL +  R
Sbjct: 182 RETFVTVTPVKPKASRNYSSEMFLLGRQLR 211


>gi|13386002|ref|NP_080786.1| putative ribosomal RNA methyltransferase 2 [Mus musculus]
 gi|81880352|sp|Q9CPY0|RRMJ2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase 2; AltName:
           Full=Protein ftsJ homolog 2; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase
 gi|12844585|dbj|BAB26420.1| unnamed protein product [Mus musculus]
 gi|12856472|dbj|BAB30680.1| unnamed protein product [Mus musculus]
 gi|26346843|dbj|BAC37070.1| unnamed protein product [Mus musculus]
 gi|40555804|gb|AAH64776.1| FtsJ homolog 2 (E. coli) [Mus musculus]
 gi|74219034|dbj|BAE26662.1| unnamed protein product [Mus musculus]
 gi|148687177|gb|EDL19124.1| FtsJ homolog 2 (E. coli) [Mus musculus]
          Length = 246

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T     R   G+   WL RH+ DP+V+ A++E +R RSA+KLL++NEKHQIL+   
Sbjct: 15  RRLHTAVCHYRGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGL 74

Query: 70  RIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFFK-FDFLDLD 123
           R++D G++PG+WSQVA +   +           V+ +D+L + P+ G  F    D  D  
Sbjct: 75  RVLDCGAAPGAWSQVAVQRVNATGADSSSPVGFVLGVDLLHIFPLAGATFLCPADVTDPR 134

Query: 124 SWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +++ I + +     D++LSDMA    G R +DH + +SLC      A+++L+ GG  L K
Sbjct: 135 TFQKILELLPSRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           T+ G  ++ +   L + FQ    VKP ASR ES E++LLA  +R
Sbjct: 195 TWAGSKSHLLQKRLTQEFQSTRVVKPEASRKESSEVYLLATQYR 238


>gi|156547729|ref|XP_001605414.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 311

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQI+++  I     + VDL ++PGSWSQV ++ + 
Sbjct: 5   SKDKRDIYYRRAKEEGWRARSAFKLLQIDDEFNIFNGVTKAVDLCAAPGSWSQVLSQTS- 63

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
           ++    +++A+D+  M PI GV   + D  ++ + E I    G  + DLV+ D A    G
Sbjct: 64  TDVVAPKIIAVDLQAMAPIEGVVQIQGDITNVTTAEQIIAHFGNEHADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA     ++L   G F+ K F+    + +   LK  F  V   KP 
Sbjct: 124 LHDMDIYIQSQLLLAALKITTQILKPKGTFVAKIFRAKDASLLYSQLKIFFTSVTCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E F++ K F
Sbjct: 184 SSRNSSFEAFVVCKDF 199


>gi|166712463|ref|ZP_02243670.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 210

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 121/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++A+ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S  +  RVVA+DILDM  + GV+F   DF +          +G  P DLV
Sbjct: 63  WSQQVRK---SMGDRGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E++ L +G R
Sbjct: 180 YEKVTIRKPAASRKRSPEVYALGQGKR 206


>gi|94311127|ref|YP_584337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Cupriavidus
           metallidurans CH34]
 gi|143461257|sp|Q1LLA8|RLME_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|93354979|gb|ABF09068.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 221

 Score =  234 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 121/221 (54%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+++ +++Q  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ A               +  VVAIDIL MEP+  V F + DF + + +  + Q
Sbjct: 58  APGSWSQYARNKLAASPRAKDGRIDGAVVAIDILPMEPVADVTFIQGDFREEEVFRQLEQ 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     G   DLV+SDMA    G    D  R   LC+ A  FA   L   G  LVK F 
Sbjct: 118 VVLDASGGSRIDLVISDMAPNLSGVASADAARIEYLCDLALDFAQAHLKPEGSLLVKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 GSGYSQIVEKFKRQFKVVASRKPKASRDKSSETFILGRYLK 218


>gi|221111714|ref|XP_002156663.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 299

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQINE+  +  +  R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDVYYRLAKEGGWRARSAFKLLQINEEFDLFTNVNRVVDLCAAPGSWSQVLSRKLI 64

Query: 91  SNANN---TRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYP 146
              +     ++VA+D+  M P+ GV   + D   + +  E I    G   DLV+ D A  
Sbjct: 65  EERDQKNAVKIVAVDLQAMAPLPGVIQIQGDITKVSTANEIISHFEGEPADLVVCDGAPD 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L IGG+F+ K F+G   N +   +K  F  V   
Sbjct: 125 VTGLHDIDEYIQGQLLLAAFNITSHVLKIGGNFVAKIFRGKDVNLLYSQMKLFFTDVTVC 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F++   +
Sbjct: 185 KPRSSRNSSIEAFIVCLNY 203


>gi|56478166|ref|YP_159755.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
 gi|81356990|sp|Q5P1G0|RLME_AROAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56314209|emb|CAI08854.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
          Length = 207

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 126/207 (60%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+  H+NDPYVQRA+ EG+R+R+A+KL++++++ ++++S   +VDLG++PGS
Sbjct: 2   KRTKTSKAWMQEHVNDPYVQRAKSEGYRSRAAFKLIELDDRDRLMRSGMVVVDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVA R  G      RV A+D+L ++P+ GV+F + DF +      +   +GG P D+V
Sbjct: 62  WSQVALRRVGREG---RVFALDLLPLDPLGGVEFIQGDFQEEPVLAELESRLGGLPVDVV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G    D  R++ L E A  FA   L  GG F+VK FQG    +      KH
Sbjct: 119 LSDMAPNMSGIDTTDQARSIYLGELALEFAGHHLKPGGGFVVKVFQGQGFMEYRNEAAKH 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F  +   KP ASR  S E++L+  G+R
Sbjct: 179 FHALHVRKPKASRDRSAEVYLVGVGYR 205


>gi|300795838|ref|NP_001178187.1| putative ribosomal RNA methyltransferase 2 [Bos taurus]
 gi|297490658|ref|XP_002698278.1| PREDICTED: FtsJ homolog 2-like [Bos taurus]
 gi|296473105|gb|DAA15220.1| FtsJ homolog 2-like [Bos taurus]
          Length = 244

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 7/225 (3%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
            +R  T     +S  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+  
Sbjct: 14  RQRFHTTGSCYKSRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPG 73

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDL 122
            R++D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D 
Sbjct: 74  LRVLDCGAAPGAWSQVAVQRVNAAGTDPSAPVGFVLGVDLLHIFPLEGATFLCPADVTDP 133

Query: 123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            ++  I++ + GG  D++LSDMA    G R +DH R +SLC +      ++L+  G FL 
Sbjct: 134 RTFRKIQELLPGGRADVILSDMAPNATGIRSLDHDRLISLCLSLLDMVPDVLHPRGTFLC 193

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           KT+ G  +  +   L + FQ    VKP ASR ES E++LLA  +R
Sbjct: 194 KTWAGSQSQRLQKRLTQEFQNTRTVKPEASRKESSEVYLLATQYR 238


>gi|300123162|emb|CBK24435.2| unnamed protein product [Blastocystis hominis]
          Length = 288

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 2/197 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-IT 89
           ++   D Y ++A+  G+RARSA+KLLQINE++ I     R VDL ++PGSWSQV +R + 
Sbjct: 5   SKDKRDIYYRKAKEVGYRARSAFKLLQINEEYHIFDQVSRAVDLCAAPGSWSQVLSRELY 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTI 148
                + ++VA+D+ +M PI GV   + D     +  E I    G    LV+ D A    
Sbjct: 65  KPEKKDVKIVAVDLQEMAPIEGVIQIQGDITSKKTADEIINHFEGKKAQLVICDGAPDVT 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +D      L  +A     ++L  GG F+ K F+G     +   L+  F +V   KP
Sbjct: 125 GLHDMDVYVQSQLLLSALSITAQVLCDGGTFIAKIFRGRDVTLLFAQLRVFFSEVACCKP 184

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F++ + F
Sbjct: 185 KSSRNSSMEAFVVCRDF 201


>gi|320162925|gb|EFW39824.1| cell division protein [Capsaspora owczarzaki ATCC 30864]
          Length = 327

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y + A+ EGWRARSA+KLLQ++E+ Q+  + RR VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDEEFQLFLNVRRAVDLCAAPGSWSQVLSKKLD 64

Query: 88  ------------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
                       +        ++VA+D+  M P+ GV   + D     + + I     G 
Sbjct: 65  AVQCPVAVPMESLPAHCQIPRKIVAVDLQAMAPLPGVIQIQGDITKESTAQQIVAHFEGE 124

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLV+ D A    G   ID      L  AA      +L   G F+ K F+G   + +  
Sbjct: 125 LADLVVCDGAPDVTGLHDIDEYIQAQLILAALNITTHVLRPDGVFVAKIFRGKDVSLLYS 184

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            LK  F+ V   KP +SR  S+E F++ +G+
Sbjct: 185 QLKLFFRNVTCSKPRSSRNSSIEAFVVCRGY 215


>gi|296193362|ref|XP_002744485.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
           [Callithrix jacchus]
          Length = 246

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 7/224 (3%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
            +   T +   ++  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+  
Sbjct: 14  RKGFHTARSHCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPG 73

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDL 122
            R++D G++PG+WSQVA R   +   +       V+ +D+L + P+ G  F    D  D 
Sbjct: 74  LRVLDCGAAPGAWSQVAVRKVNATGTDLSSPVGFVLGVDLLHILPLEGATFLCPADVTDP 133

Query: 123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            + + I + + GG  D++LSDMA    G R +DH R +SLC +      ++L+ GG FL 
Sbjct: 134 RTSQRILELLPGGRADVILSDMAPNATGVRDLDHDRLISLCLSLLGMTPDILHPGGTFLC 193

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           KT+ G  +  +   L + FQ V  +KP ASR ES EM+ LA  +
Sbjct: 194 KTWAGSQSRQLQSRLTEEFQSVRIIKPEASRKESSEMYFLATQY 237


>gi|313242586|emb|CBY34717.1| unnamed protein product [Oikopleura dioica]
          Length = 317

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQI+E+  + ++  ++VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEQGWRARSAFKLLQIDERFDLFKNVTKVVDLCAAPGSWSQVLSKKL- 63

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIG 149
            +  N ++V++D+  M PI  V   + D    ++  E I    GG  DLV+ D A    G
Sbjct: 64  KDKENAKIVSVDLQPMAPIDNVICIQGDITSQETSDEIIAHFDGGKADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   +  +L+ GG F+ K F+G   + I    +  F+ V   KP 
Sbjct: 124 LHDLDEYIQSQLILAAFNISTFVLSPGGTFVSKIFRGRDCDLIFHQFQMFFKNVYLAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SRA SVE F++A  F
Sbjct: 184 SSRASSVEAFVVAIDF 199


>gi|207723995|ref|YP_002254393.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum MolK2]
 gi|207742905|ref|YP_002259297.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum IPO1609]
 gi|206589203|emb|CAQ36165.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum MolK2]
 gi|206594300|emb|CAQ61227.1| ribosomal rna large subunit methyltransferase j (cell division
           protein ftsj) [Ralstonia solanacearum IPO1609]
          Length = 230

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/229 (39%), Positives = 126/229 (55%), Gaps = 15/229 (6%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
            RRG     KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  
Sbjct: 3   RRRGANSMAKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPG 58

Query: 69  RRIVDLGSSPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
           + IVDLG++PGSWSQ       A+        +  +VAIDIL MEP+  V F + DF + 
Sbjct: 59  QVIVDLGAAPGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVAFIQGDFREE 118

Query: 123 DSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             ++ +   +     GG  DLVLSDMA    G    D  R   + E A  FA   L   G
Sbjct: 119 AVFQQLEAIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEG 178

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L+K F G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 179 ALLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 227


>gi|328867319|gb|EGG15702.1| rRNA methyltransferase [Dictyostelium fasciculatum]
          Length = 254

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EG+RARSA+KLLQI++ + I +  +R+VDL ++PGSWSQ  +R   
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAFKLLQIDDDYNIFEGVKRVVDLCAAPGSWSQALSRKIY 64

Query: 91  SNA--NNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPT 147
            +    + ++VA+DI +M P+ GV   + D   L++  E   Q  G   DLV+SD A   
Sbjct: 65  GDGSDPDVKIVAVDIQEMAPLKGVVQIRGDITKLETALEITNQFDGKQADLVVSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  AA      +L  GG F+ K F+G     +   L+  F+ V  VK
Sbjct: 125 TGLHDIDFYGQSQLILAALNITTHILRPGGCFVAKMFKGNDMTLMYNQLRVFFRSVQFVK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F+L + +
Sbjct: 185 PKSSRNSSLEAFVLCQHY 202


>gi|196016828|ref|XP_002118264.1| hypothetical protein TRIADDRAFT_62287 [Trichoplax adhaerens]
 gi|190579165|gb|EDV19267.1| hypothetical protein TRIADDRAFT_62287 [Trichoplax adhaerens]
          Length = 313

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y ++A+ EGWRARSA+KLLQI+E+  I +   R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRQAKEEGWRARSAFKLLQIDEEFTIFKGVTRAVDLCAAPGSWSQVLSKKLR 64

Query: 88  ----ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSD 142
               ++ +  +  ++VA+D+  M P+ GV   + D   + +    I    G   DLV+ D
Sbjct: 65  NQENLSEAEQSKVKIVAVDLQAMAPLDGVIQIQGDITSVSTANRIIDYFEGEKADLVVCD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      L  AA      +L  GG F+ K F+G   + +   L+  F  
Sbjct: 125 GAPDVTGQHDLDEYFQAQLLLAALNITNHVLKSGGTFIAKIFRGKDVSLLYSQLRVFFPN 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP +SR  S+E F++ + +
Sbjct: 185 VTISKPRSSRNSSIEAFVVCRNY 207


>gi|225712472|gb|ACO12082.1| ribosomal RNA methyltransferase 1 [Lepeophtheirus salmonis]
          Length = 297

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARIT 89
           ++   D Y + A+ EGWRARSA+KL+QIN++  ++ S  + +VDL ++PGSWSQV A+  
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLIQINDEFNLINSDVQNVVDLCAAPGSWSQVLAKKI 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
              +    +VA+D+  M PI GV   + D   L + E I     G+  +LV+ D A    
Sbjct: 65  TGKSV---IVAVDLQAMAPIPGVITLQGDITKLSTAEKIISYFDGSLAELVVCDGAPDVT 121

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID      L  AA      +L  GG F+ K F+G   + I   L+  F  V   KP
Sbjct: 122 GLHDIDEYIQGHLLLAALNITTHILKPGGSFVAKIFRGKDVSTIYSQLRLFFDSVYVAKP 181

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S E F++ + +
Sbjct: 182 PSSRNSSKESFVVCQNY 198


>gi|159475208|ref|XP_001695715.1| tRNA-2'-O-ribose methyltransferase [Chlamydomonas reinhardtii]
 gi|158275726|gb|EDP01502.1| tRNA-2'-O-ribose methyltransferase [Chlamydomonas reinhardtii]
          Length = 323

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D + ++A+ EGWRARSAYKLLQI+E   I       VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIFYRKAKEEGWRARSAYKLLQIDEAFDIFSGVEHAVDLCAAPGSWSQVLSRKLF 64

Query: 88  ---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDM 143
              +   N N   +VA+D+  M PI GV   + D     + +  I    G   DLV+ D 
Sbjct: 65  LPALRAGNPNPPTIVAVDLQPMAPIEGVVQLQGDITSEATAKQVISHFHGQPADLVVCDG 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L  GG F+ K F+G     +   LK  F +V
Sbjct: 125 APDVTGLHDLDEYVQAQLLLAALSIVCAVLRPGGTFVAKIFRGKDVALLYSQLKMLFPEV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SR  S+E F++ + F
Sbjct: 185 YVAKPKSSRNSSIEAFVVCRRF 206


>gi|332283363|ref|YP_004415274.1| ribosomal RNA large subunit methyltransferase j [Pusillimonas sp.
           T7-7]
 gi|330427316|gb|AEC18650.1| ribosomal RNA large subunit methyltransferase j [Pusillimonas sp.
           T7-7]
          Length = 211

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 3/208 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +  S+DW+ +HINDPYV+ AQ +G+RAR+A+KL +I +  +++Q    +VDLGS+PGSW
Sbjct: 3   KKKFSKDWVMQHINDPYVKMAQQKGYRARAAFKLTEILDAEKLMQPGDIVVDLGSAPGSW 62

Query: 82  SQVAARITGSNAN--NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDL 138
           SQVA           + R++A+D+L MEPI GV+F + DF +    E ++  +G    DL
Sbjct: 63  SQVARERLAGAGGVVDGRIIALDMLPMEPIAGVEFIQGDFREDIMLEQLKNLLGDAQVDL 122

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G    D  R   +C+ A  FA + L   G  +VK F G   + I+   K+
Sbjct: 123 VISDMAPNLSGVSSADSARIQHVCDLALDFACQHLKPEGALIVKAFHGSGFSQIVESFKR 182

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F +V+  KP ASR +S E FL+A+  +
Sbjct: 183 CFLRVVERKPKASRDKSSETFLVARRLK 210


>gi|332259367|ref|XP_003278759.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
           [Nomascus leucogenys]
          Length = 423

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/240 (37%), Positives = 135/240 (56%), Gaps = 19/240 (7%)

Query: 2   VKPPGSSSRRG----------LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARS 51
            + PG SSR G          +  + KNR+  G+   WL RH+ DP+V+ A++E +R RS
Sbjct: 179 ARIPGRSSRGGGRPQRQWFHTVGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRS 236

Query: 52  AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDM 106
           A+KLL++NE+HQIL+   R++D G++PG+WSQVA +   +   +       V+ +D+L +
Sbjct: 237 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI 296

Query: 107 EPILGVKFFK-FDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
            P+ G  F    D  D  + + I + + GG  D++LSDMA    G R +DH R +SLC  
Sbjct: 297 FPLEGATFLCPADVTDPRTSQRILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLT 356

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
                 ++L  GG FL KT+ G  +  +   L + FQ V  +KP ASR ES E++ LA  
Sbjct: 357 LLSVTPDILQPGGTFLCKTWAGSLSRRLQRRLTEEFQNVRIMKPEASRKESSEVYFLATH 416


>gi|325924512|ref|ZP_08186031.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325545007|gb|EGD16342.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 210

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+ N  +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPNMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           W Q   R   S  +  RV+A+DIL+M P+ GV+F   DF +          +G  P DLV
Sbjct: 63  WCQQVRR---SLGDTGRVLALDILEMPPLAGVEFLHGDFREQAVLSEFEAMLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKTGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++KV   KP ASR  S E++ L +G R
Sbjct: 180 YEKVTIRKPAASRKRSPEVYALGQGKR 206


>gi|313237227|emb|CBY12443.1| unnamed protein product [Oikopleura dioica]
          Length = 317

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQI+E+  + ++  ++VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEQGWRARSAFKLLQIDERFDLFKNVTKVVDLCAAPGSWSQVLSKKL- 63

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIG 149
            +  N ++V++D+  M PI  V   + D    ++  E I    GG  DLV+ D A    G
Sbjct: 64  KDKENAKIVSVDLQPMAPIDNVICIQGDITSQETSDEIITHFDGGKADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   +  +L+ GG F+ K F+G   + I    +  F+ V   KP 
Sbjct: 124 LHDLDEYIQSQLILAAFNISTFVLSPGGTFVSKIFRGRDCDLIFHQFQMFFKNVYLAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SRA SVE F++A  F
Sbjct: 184 SSRASSVEAFVVAIDF 199


>gi|167626618|ref|YP_001677118.1| ribosomal RNA large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189040691|sp|B0TZQ8|RLME_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|167596619|gb|ABZ86617.1| ribosomal RNA large subunit methyltransferase J [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 206

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 128/207 (61%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   +++ W+  H +D YV +A   G+R+R+++K+++I +K+ + + N  I+DLG++PG 
Sbjct: 2   SKGSTTKKWIQDHTSDYYVLQANKLGYRSRASFKIIEIQDKYNLFKQNMFIIDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WS+   +  G+N    +++A+D+L+M PI GV+F + +F   +++E + Q I     D V
Sbjct: 62  WSEQVVKFIGNNG---KLIALDLLEMAPIAGVEFIQGNFSSDETYERLNQLINDKKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  R++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQARSIHLLELALDFATTNLNRNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV   KP +SR +S E +++A GF+
Sbjct: 179 FNKVTQFKPKSSRPKSREFYVVATGFK 205


>gi|300691218|ref|YP_003752213.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
 gi|299078278|emb|CBJ50926.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
          Length = 221

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ                 +  +VAIDIL MEP+  V F + DF +   ++ + +
Sbjct: 58  APGSWSQYVRNKLADSPRAKDGRIDGAIVAIDILPMEPVSDVTFIQGDFREEAVYQQLEK 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FAL  L   G  L+K F 
Sbjct: 118 IVLDTTGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFALAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|254298037|ref|ZP_04965490.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 406e]
 gi|157807431|gb|EDO84601.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 406e]
          Length = 210

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 10/208 (4%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           ++ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A    
Sbjct: 1   MHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL 60

Query: 90  G---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
                         +  ++A+D+L MEP+  V F + DF +      + + + G   DLV
Sbjct: 61  AQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQLEEVLAGRAVDLV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K  
Sbjct: 121 ISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQ 180

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F+ V   KP ASR +S E F+L +  ++
Sbjct: 181 FKTVAPRKPKASRDKSSETFILGRHLKQ 208


>gi|307174434|gb|EFN64935.1| Putative ribosomal RNA methyltransferase CG11447 [Camponotus
           floridanus]
          Length = 246

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 6/213 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  + SS+ WL R I DPYV++A+ E +R RSA+KLLQINEK++I      ++D G++PG
Sbjct: 29  KGKKHSSQLWLMRQIRDPYVEKAKQENYRCRSAFKLLQINEKYKIFCPGLTVIDCGAAPG 88

Query: 80  SWSQVAARITGSN----ANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-G 133
           SW+QVA  +T S+        +V AID L   P+ G       DF    + E +   + G
Sbjct: 89  SWTQVATNLTNSHAKSQGPIGKVYAIDKLPFFPVEGATVLGNMDFTITKTQETLLALLQG 148

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D+VLSDMA    G R IDH   + L  AA  FAL++  I G  ++K + GG + ++ 
Sbjct: 149 KKADVVLSDMAPNASGIRAIDHDNIILLAYAALKFALQITKIHGTLVIKVWDGGKSQELE 208

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L + +  V  VKP A+R ES E F LA+GF+
Sbjct: 209 QNLLRFYNNVKIVKPDATRDESTEKFFLARGFK 241


>gi|308467426|ref|XP_003095961.1| hypothetical protein CRE_06935 [Caenorhabditis remanei]
 gi|308244230|gb|EFO88182.1| hypothetical protein CRE_06935 [Caenorhabditis remanei]
          Length = 331

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 1/196 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+  RR VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLF 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +D+    I    G   D+V+ D A    G
Sbjct: 65  EEDKEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIEHFSGDKSDIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +K++F+KV   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLRPGGNFLAKIFRSRNSSLLYAQMKRYFKKVYLAKPR 184

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E F+L   +
Sbjct: 185 SSRQSSCEAFVLCLDY 200


>gi|17546244|ref|NP_519646.1| ribosomal RNA large subunit methyltransferase J [Ralstonia
           solanacearum GMI1000]
 gi|81505141|sp|Q8XZ79|RLME_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|17428541|emb|CAD15227.1| probable ribosomal rna large subunit methyltransferase j (cell
           division protein ftsj) [Ralstonia solanacearum GMI1000]
          Length = 221

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ       A+        +  +VAIDIL MEP+  V F + DF +   ++ +  
Sbjct: 58  APGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQQLET 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FA   L   G  L+K F 
Sbjct: 118 IVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|62263595|gb|AAX78175.1| unknown protein [synthetic construct]
          Length = 241

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 28  SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 87

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 88  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 144

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 145 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 204

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 205 FNKVIQFKPKSSRAKSREFYVIATEFK 231


>gi|156549827|ref|XP_001607570.1| PREDICTED: similar to GA11008-PA, partial [Nasonia vitripennis]
          Length = 230

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  + SS+ WL+R   DPYV++A+ E +R RSA+KLL+IN KH+IL     +VD G++PG
Sbjct: 9   KGKKHSSQQWLSRQFKDPYVEKARQENYRCRSAFKLLEINRKHRILSPGLHVVDCGAAPG 68

Query: 80  SWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIG 133
           SW+QVA ++T S+         +V+AID L + PI G   +   DF   D+   ++ A+G
Sbjct: 69  SWTQVATQLTNSHGKMLGEQVGKVIAIDKLPIHPIEGATVYGNLDFTTEDAQNILKAALG 128

Query: 134 GN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   ++V+SDMA    G R +DH   + L   A  FA+E+    G F+VK + G     +
Sbjct: 129 GKFVEVVMSDMAPNASGVRDLDHENIIKLAYMAFKFAIEVSCYEGTFIVKVWDGHKCPKL 188

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              L + F+ V   +P A+R ES E F++A+GF+
Sbjct: 189 EEDLARFFRNVKIARPQATRDESSEKFIIARGFK 222


>gi|83747764|ref|ZP_00944798.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
           UW551]
 gi|83725536|gb|EAP72680.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
           UW551]
          Length = 279

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/237 (39%), Positives = 130/237 (54%), Gaps = 17/237 (7%)

Query: 3   KPPGSS--SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           KP  S+   RRG     KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E
Sbjct: 44  KPAASAMFRRRGANSMAKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDE 99

Query: 61  KHQILQSNRRIVDLGSSPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKF 114
           + ++++  + IVDLG++PGSWSQ       A+        +  +VAIDIL MEP+  V F
Sbjct: 100 QDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVAF 159

Query: 115 FKFDFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            + DF +   ++ +   +     GG  DLVLSDMA    G    D  R   + E A  FA
Sbjct: 160 IQGDFREEAVFQQLEAIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA 219

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              L   G  L+K F G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 220 QAHLKPEGALLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 276


>gi|87162879|gb|ABD28674.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Medicago truncatula]
          Length = 316

 Score =  232 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + N   +VAID+  M PI GV   + D  +  + E  IR   G   +LV+
Sbjct: 65  LPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKANLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209


>gi|255067624|ref|ZP_05319479.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
           ATCC 29256]
 gi|255048098|gb|EET43562.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
           ATCC 29256]
          Length = 184

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/187 (43%), Positives = 112/187 (59%), Gaps = 4/187 (2%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
            AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQVAA++ G   N+ RV A
Sbjct: 1   MAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NSGRVFA 57

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTM 159
           +DIL M+ I GV F + DF + +        +   P DLV+ DMA    G+   D  R+ 
Sbjct: 58  LDILPMDEIEGVSFIQGDFREDEVLAQFETLLDARPLDLVICDMAPNMSGNAVTDQARSF 117

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LCE A  FA+  L  GG FLVK FQG    + +  +++ F  V   KP ASR  S E++
Sbjct: 118 YLCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIY 177

Query: 220 LLAKGFR 226
           LL K  R
Sbjct: 178 LLGKNKR 184


>gi|157820165|ref|NP_001100595.1| putative ribosomal RNA methyltransferase 2 [Rattus norvegicus]
 gi|149035019|gb|EDL89739.1| rCG42633 [Rattus norvegicus]
          Length = 246

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           RR  T     +   G+   WL RH+ DP+V+ A+ E +R RSA+KLL++NEKH IL+   
Sbjct: 15  RRLHTAVCHYKGRTGAEHLWLMRHLKDPFVKAAKAESYRCRSAFKLLEMNEKHHILRPGL 74

Query: 70  RIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFFK-FDFLDLD 123
           R++D G++PG+WSQVA +   +           V+ +D+L M P+ G  F    D  D  
Sbjct: 75  RVLDCGAAPGAWSQVAVQSVNATGADSSSPMGFVLGVDLLHMFPLAGATFLCPADVTDPR 134

Query: 124 SWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +++ I + +     D++LSDMA    G R +DH R +SLC      A+++L+ GG  L K
Sbjct: 135 TFQRILELLPRRRADVILSDMAPNATGIRDLDHDRLISLCLTLVDMAVDILHPGGTLLCK 194

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           T+ G  ++ +   L + F+    VKP ASR ES E++LLA  +
Sbjct: 195 TWAGSKSHLLQKRLAQEFRSTRVVKPEASRKESAEVYLLATQY 237


>gi|198284444|ref|YP_002220765.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665397|ref|YP_002427111.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226703276|sp|B7J8G6|RLME_ACIF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703277|sp|B5ENR5|RLME_ACIF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|198248965|gb|ACH84558.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517610|gb|ACK78196.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 219

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 3/205 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL  H  DP+VQRA  EG+R+R++YKLL+I +K  +++   R++D+G++PG W
Sbjct: 3   RSKSSEKWLKEHFKDPFVQRAMKEGYRSRASYKLLEIQQKDHLIRPGMRVLDVGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           +QVAA + G      R+VA+D L M+P+        D  D       ++A+ G  DL++S
Sbjct: 63  TQVAAPLIGRKG---RLVAVDRLAMDPVADATVICGDVYDDAILAACQEALPGGADLIMS 119

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G   +D  R + L E A   A   L  GG  L+K F G    ++   L++ F+
Sbjct: 120 DMAPNMSGIASVDQARAIDLAELALDMAHRWLVPGGALLIKVFMGSGAEELRRALRRDFK 179

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           K++  KP ASRA S E + LA  F+
Sbjct: 180 KIVVRKPEASRARSTEQYWLALDFQ 204


>gi|325916042|ref|ZP_08178332.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537718|gb|EGD09424.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 210

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H  DPYV++AQ EG R+R+AYKL ++ ++ ++L+    +VDLG++PG 
Sbjct: 3   SRSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGG 62

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +   S  ++ RV+A+DILDM  + GV F   DF +          +G  P DLV
Sbjct: 63  WSQQVRK---SMGDSGRVLALDILDMPALAGVDFLHGDFREQAVLSQFEAMLGDVPVDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   L  GG FL+K FQG  ++D +  L++ 
Sbjct: 120 LSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKTGGAFLIKLFQGVGSDDYIRELRRR 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           + KV   KP ASR  S E++ L +G R
Sbjct: 180 YDKVTIRKPAASRKRSPEVYALGQGKR 206


>gi|294340419|emb|CAZ88800.1| putative Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
           methyltransferase) (Cell division protein ftsJ)
           [Thiomonas sp. 3As]
          Length = 216

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/213 (39%), Positives = 119/213 (55%), Gaps = 2/213 (0%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + +      S+ WL  H+NDPYV+ AQ EG+RAR+AYKL +I+E   +L+  + +VDLGS
Sbjct: 1   MSSAKKNKFSKAWLQDHLNDPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGS 60

Query: 77  SPGSWSQVAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GG 134
           +PGSWSQ A  R+    A    ++++D+L MEP+  V F   DF +      +   + G 
Sbjct: 61  TPGSWSQYARNRLMRGGAVQGTILSLDLLPMEPVPDVHFLLGDFREEAVVNQLEALLEGR 120

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA    G    D  R   L E A  FA   L   G  ++KTF G   + I+ 
Sbjct: 121 KVDVVLSDMAPNLTGIPSADAARIEHLSELALDFAQRWLQPQGAMVIKTFHGSYYSQIVK 180

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
             K  FQ+V  VKP ASR +S E F+LA+  +K
Sbjct: 181 AFKLVFQQVKAVKPQASRDKSAETFILARTLKK 213


>gi|21593533|gb|AAM65500.1| cell division-like protein [Arabidopsis thaliana]
          Length = 308

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
                     + +   +VAID+  M PI GV   + D  +  +   IR   G   DLV+ 
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTEVVIRHFDGCKADLVVC 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F 
Sbjct: 125 DGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFFP 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP +SR  S+E F + + +
Sbjct: 185 TVTFAKPKSSRNSSIEAFAVCENY 208


>gi|299066492|emb|CBJ37682.1| 23S rRNA methyltransferase [Ralstonia solanacearum CMR15]
          Length = 221

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ       A+        +  +VAIDIL MEP+  V F + DF +   ++ +  
Sbjct: 58  APGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQELEA 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FA   L   G  L+K F 
Sbjct: 118 IVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|115469828|ref|NP_001058513.1| Os06g0704900 [Oryza sativa Japonica Group]
 gi|53792764|dbj|BAD53799.1| putative FtsJ homolog 1 isoform b [Oryza sativa Japonica Group]
 gi|113596553|dbj|BAF20427.1| Os06g0704900 [Oryza sativa Japonica Group]
 gi|215736929|dbj|BAG95858.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218198852|gb|EEC81279.1| hypothetical protein OsI_24387 [Oryza sativa Indica Group]
 gi|222636192|gb|EEE66324.1| hypothetical protein OsJ_22564 [Oryza sativa Japonica Group]
          Length = 317

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+++  I    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLSRNLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                       +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  VPAKQSPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V   KP +SR  S+E F + + +
Sbjct: 185 SQVTFAKPKSSRNSSIEAFAVCENY 209


>gi|90652009|gb|AAI14565.1| FTSJ2 protein [Homo sapiens]
          Length = 240

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 9/227 (3%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL 65
           G      +  + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL
Sbjct: 7   GRQGFHTVGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQIL 64

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDF 119
           +   R++D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D 
Sbjct: 65  RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADV 124

Query: 120 LDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
            D  + + I + + G   D++LSDMA    G R +DH R +SLC        ++L  GG 
Sbjct: 125 TDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGT 184

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           FL KT+ G  +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 185 FLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 231


>gi|296136184|ref|YP_003643426.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
           K12]
 gi|295796306|gb|ADG31096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
           K12]
          Length = 216

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 2/213 (0%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           + +      S+ WL  H+NDPYV+ AQ EG+RAR+AYKL +I+E   +L+  + +VDLGS
Sbjct: 1   MSSAKKNKFSKAWLQDHLNDPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGS 60

Query: 77  SPGSWSQVAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GG 134
           +PGSWSQ A  R+    A    ++A+D+L MEP+  V+F   DF +      +   + G 
Sbjct: 61  TPGSWSQYARNRLMRGGAVQGTILALDLLPMEPVPDVRFLLGDFREEAVVNQLEALLEGR 120

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D+VLSDMA    G    D  R   L E A  FA   L   G  ++KTF G   + I+ 
Sbjct: 121 KVDVVLSDMAPNLTGIPSADAARIEHLSELALDFAQRWLQPQGAMVIKTFHGSYYSQIVK 180

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
             K  FQ+V  VKP ASR +S E F+LA+  +K
Sbjct: 181 AFKLVFQQVKAVKPRASRDKSAETFILARTLKK 213


>gi|238899017|ref|YP_002924699.1| 23S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259494566|sp|C4K7K8|RLME_HAMD5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|229466777|gb|ACQ68551.1| 23S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 208

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 4/199 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           WL  H ND YV  AQ +  R+R+ +KL +I+   +I +    ++DLG++PG WSQ     
Sbjct: 13  WLQEHFNDKYVIEAQKKKLRSRAWFKLDEIDNTDKIFKRGMFVLDLGAAPGGWSQYVVNK 72

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G      +V+A+D+L M+ ILGV+F + DF +    + +   IG    D+V+SDMA   
Sbjct: 73  VGLKG---KVIALDLLPMDSILGVEFLQGDFREKSILKRLLNCIGDKKIDVVISDMAPNM 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  ++M L E A   + ++L  GG FLVK FQG      L  ++  F+KV   K
Sbjct: 130 TGISSVDIPKSMHLAELAFDISRDILIPGGSFLVKVFQGEGFEQYLREMRSLFKKVKVRK 189

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR  S E++++A G +
Sbjct: 190 PDASRIRSREVYIVATGLK 208


>gi|330937938|gb|EGH41725.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 195

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 4/187 (2%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
            AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV +R+ G      R++A
Sbjct: 1   MAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQGRLIA 57

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTM 159
            DIL+M+ I  V F + DF +    E I +A+G    DLV+SDMA    G   +D  R M
Sbjct: 58  SDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAM 117

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LCE A   A  +L  GGDFL+K FQG   +     ++K F KV   KP +SR  S E +
Sbjct: 118 FLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQY 177

Query: 220 LLAKGFR 226
           LLA+GFR
Sbjct: 178 LLARGFR 184


>gi|254373876|ref|ZP_04989358.1| ribosomal large subunit methyltransferase J [Francisella novicida
           GA99-3548]
 gi|151571596|gb|EDN37250.1| ribosomal large subunit methyltransferase J [Francisella novicida
           GA99-3548]
          Length = 206

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVVATEFK 205


>gi|291232361|ref|XP_002736125.1| PREDICTED: AGAP004177-PA-like [Saccoglossus kowalevskii]
          Length = 239

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 126/210 (60%), Gaps = 3/210 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL+R +NDPYV+RAQ+  +RARSA+KL++I++K+ IL+    ++D G++PG
Sbjct: 29  KGRSKSSQEWLSRQLNDPYVKRAQMGNYRARSAFKLIEIDDKYAILRPGSVVIDCGAAPG 88

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPD 137
           +W+QV      +     +V+++D+   +PI G     + DF    + + I + +     D
Sbjct: 89  AWTQVTVERINAEGK-GQVISVDLKYFQPINGAVIIDQSDFTLESTQKLIFEQMQKNQAD 147

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +++SDMA    G   +DH   M LC+AA  FA ++L   G FL K ++GG +      L 
Sbjct: 148 VIISDMAPNASGMHAMDHENIMVLCQAAFGFAKQVLRNNGIFLCKLWEGGQSGKFKKDLA 207

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K F+ V  VKP +SR +S EMF LA+GF +
Sbjct: 208 KTFKTVKIVKPDSSRKDSAEMFFLARGFHR 237


>gi|290560982|gb|ADD37893.1| ribosomal RNA methyltransferase 1 [Lepeophtheirus salmonis]
          Length = 297

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARIT 89
           ++   D Y + A+ EGWRARSA+KL+QIN++  ++ S  + +VDL ++PGSWSQV A+  
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLIQINDEFNLINSDVQNVVDLCAAPGSWSQVLAKKI 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
              +    +VA+D+  M PI GV   + D   L + E I     G+  +LV+ D A    
Sbjct: 65  TGKSV---IVAVDLQAMAPIPGVITLQGDITKLSTAEKIISYFDGSLAELVVCDGAPDAT 121

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID      L  AA      +L  GG F+ K F+G   + I   L+  F  V   KP
Sbjct: 122 GLHDIDEYIQGHLLLAALNITTHILKPGGSFVAKIFRGKDVSTIYSQLRLFFDSVFVAKP 181

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S E F++ + +
Sbjct: 182 PSSRNSSKESFVVCQNY 198


>gi|300703813|ref|YP_003745415.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299071476|emb|CBJ42798.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
          Length = 221

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ       A+        +  +VAIDIL MEP+  V F + DF +   +  +  
Sbjct: 58  APGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREEAVFRQLEA 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FA   L   G  L+K F 
Sbjct: 118 IVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218


>gi|254496115|ref|ZP_05109014.1| ribosomal RNA large subunit methyltransferase J [Legionella
           drancourtii LLAP12]
 gi|254354656|gb|EET13292.1| ribosomal RNA large subunit methyltransferase J [Legionella
           drancourtii LLAP12]
          Length = 196

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H +D YV++AQ EG+R+R+ YKL +++EK  +L+    +VDLG++PG W+Q  +   
Sbjct: 1   MQEHFDDVYVKKAQAEGYRSRAVYKLKEVDEKESLLKPGMTVVDLGAAPGGWTQYVSERM 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
               +   ++A+DIL M+ +  V     DF + +  + +   I     DL+LSDMA    
Sbjct: 61  QGRGH---IIALDILPMDSLPDVDVILGDFREDEVLQKLMNLIPERSVDLLLSDMAPNMS 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   ID  R M L E A  FA +ML  GG  L+K F G   ++++   K  F +V+  KP
Sbjct: 118 GTTAIDIPRAMYLVELAFDFAEKMLKPGGSMLIKVFHGSGFDELVKQAKASFDRVVIRKP 177

Query: 209 VASRAESVEMFLLAKGF 225
            ASRA S E +LLAKG+
Sbjct: 178 SASRARSKETYLLAKGY 194


>gi|330506929|ref|YP_004383357.1| ribosomal RNA large subunit methyltransferase J [Methanosaeta
           concilii GP-6]
 gi|328927737|gb|AEB67539.1| ribosomal RNA large subunit methyltransferase J [Methanosaeta
           concilii GP-6]
          Length = 256

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 114/194 (58%), Gaps = 5/194 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y ++A+ EG+RARSAYKLLQINEK  +++    +VDLG++PG W QVA +++
Sbjct: 1   MARDQKDHYYRKAKEEGYRARSAYKLLQINEKFHVIKKGDSVVDLGAAPGGWLQVAQKLS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           G      ++V +D+  + PI GV  F+ D   L + + ++ A+GG+ D+V+ D A    G
Sbjct: 61  G-----GKIVGVDLEGITPIPGVVTFRADITALSTVDQVKDALGGDADVVICDAAPNLSG 115

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               DH  ++ L  +A   A ++L   G+F+VK FQG    D L  +++ F  V    P 
Sbjct: 116 AWDRDHAISIDLARSALEMAKKLLRPRGNFVVKVFQGDMFIDFLNDVRREFAVVHAHSPA 175

Query: 210 ASRAESVEMFLLAK 223
           ASR ES E +++ K
Sbjct: 176 ASRKESAETYVVGK 189


>gi|254372405|ref|ZP_04987895.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570133|gb|EDN35787.1| ribosomal large subunit methyltransferase J [Francisella novicida
           GA99-3549]
          Length = 206

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  ++DLG++PG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVIDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVVATEFK 205


>gi|331011490|gb|EGH91546.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 195

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 4/187 (2%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
            AQ +G+R+R++YKLL+I EK ++++    ++DLG++PG WSQV +R+ G      R++A
Sbjct: 1   MAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQGRLIA 57

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTM 159
            DIL+M+ I  V F + DF +    E I +A+G    DLV+SDMA    G   +D  R M
Sbjct: 58  SDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQVDLVISDMAPNMSGLSAVDMPRAM 117

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LCE A   A  +L  GGDFL+K FQG   +     ++K F KV   KP +SR  S E +
Sbjct: 118 FLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDRSREQY 177

Query: 220 LLAKGFR 226
           LLA+GFR
Sbjct: 178 LLARGFR 184


>gi|309782468|ref|ZP_07677192.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
           5_7_47FAA]
 gi|308918805|gb|EFP64478.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
           5_7_47FAA]
          Length = 221

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 124/221 (56%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ       A+        +  +VAIDIL ME I  V F + DF + D +  + +
Sbjct: 58  APGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDDVFRQLEE 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FA+  L   G  L+K F 
Sbjct: 118 IVLEATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFKIVAPRKPKASRDKSSETFLLGRQLK 218


>gi|113868416|ref|YP_726905.1| 23S rRNA methylase [Ralstonia eutropha H16]
 gi|122946743|sp|Q0K8Y4|RLME_CUPNH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|113527192|emb|CAJ93537.1| 23S rRNA methylase [Ralstonia eutropha H16]
          Length = 221

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 119/221 (53%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+        WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNHS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAAR------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ A               +  VVAID+L MEP+  V F + DF +   +  +  
Sbjct: 58  APGSWSQYARNKLADSPRAKDGRIDGAVVAIDLLPMEPVADVTFIQGDFREESVFRELES 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     G   DLVLSDMA    G    D  R   LC+ A  FA   L   G  LVK F 
Sbjct: 118 VVLDASGGNKIDLVLSDMAPNLSGVAFADAARIEYLCDLALEFAQAHLKPEGALLVKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+   K+HF+ V   KP ASR +S E F+L +  +
Sbjct: 178 GSGYSQIVEKFKRHFKVVAKRKPKASRDKSSETFILGRYLK 218


>gi|309356401|emb|CAP37270.2| hypothetical protein CBG_20162 [Caenorhabditis briggsae AF16]
          Length = 336

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 1/196 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+   R VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +++    I    G   D+V+ D A    G
Sbjct: 65  EEDEKAKIVAIDLQPMAPIPGVIQLQGDITSVETANQVIEHFSGEKADIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +K++F++V   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLKNGGNFLAKIFRSRNSSLLYAQMKRYFKQVYLAKPR 184

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E F+L   +
Sbjct: 185 SSRQSSCEAFVLCLDY 200


>gi|187929109|ref|YP_001899596.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
 gi|226705302|sp|B2UGQ0|RLME_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|187725999|gb|ACD27164.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
          Length = 221

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ       A+        +  +VAIDIL ME I  V F + DF + + +  + +
Sbjct: 58  APGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDEVFRQLEE 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FA+  L   G  L+K F 
Sbjct: 118 IVLEVSGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFKIVAPRKPKASRDKSSETFLLGRQLK 218


>gi|54112769|gb|AAV29018.1| NT02FT0627 [synthetic construct]
          Length = 206

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 2   SIGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATEFK 205


>gi|242066866|ref|XP_002454722.1| hypothetical protein SORBIDRAFT_04g036220 [Sorghum bicolor]
 gi|241934553|gb|EES07698.1| hypothetical protein SORBIDRAFT_04g036220 [Sorghum bicolor]
          Length = 317

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+++  I    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLSRNLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                       +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  VPAKQSPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V   KP +SR  S+E F + + +
Sbjct: 185 SQVTFAKPKSSRNSSIEAFAVCENY 209


>gi|56708013|ref|YP_169909.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670484|ref|YP_667041.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134302197|ref|YP_001122166.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931311|ref|YP_001891295.1| 23S rRNA methylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|208780502|ref|ZP_03247842.1| ribosomal RNA large subunit methyltransferase J [Francisella
           novicida FTG]
 gi|224457094|ref|ZP_03665567.1| 23S rRNA methylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254368671|ref|ZP_04984685.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica FSC022]
 gi|254370496|ref|ZP_04986501.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874812|ref|ZP_05247522.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597551|sp|Q5NGD3|RLME_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|123359494|sp|Q14HT5|RLME_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513855|sp|A4IYP4|RLME_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703306|sp|B2SF85|RLME_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56604505|emb|CAG45545.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320817|emb|CAL08928.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134049974|gb|ABO47045.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568739|gb|EDN34393.1| hypothetical protein FTBG_00272 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|157121586|gb|EDO65763.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica FSC022]
 gi|187712220|gb|ACD30517.1| 23S rRNA methylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|208743648|gb|EDZ89952.1| ribosomal RNA large subunit methyltransferase J [Francisella
           novicida FTG]
 gi|254840811|gb|EET19247.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 206

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATEFK 205


>gi|322794006|gb|EFZ17244.1| hypothetical protein SINV_09000 [Solenopsis invicta]
          Length = 246

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 6/213 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  + SS+ WL R + DPYV++A+ E +R RSA+KLL+INE+ +I      +VD G++PG
Sbjct: 29  KGKKHSSQLWLARQLRDPYVEKAKQEKYRCRSAFKLLEINERFKIFSPGLTVVDCGAAPG 88

Query: 80  SWSQVAARITGSNANN----TRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-G 133
           SW+QVA  +T ++        RV AID L   P+ G       DF    + E + + + G
Sbjct: 89  SWTQVATNLTNAHGKKKGRIGRVYAIDKLPFYPVEGATVLGNMDFTSPKTQETLIELLQG 148

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D+VLSDMA    G +++DH   + L  AA  FAL++  I G  ++K + GG      
Sbjct: 149 DKVDVVLSDMAPNATGMKEMDHDNIILLAYAALRFALQISKINGTLVIKVWDGGKAQQFE 208

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L K +  +  ++P A+R ES E F LA+GF+
Sbjct: 209 QNLSKFYNSIKIIRPDATRDESTEKFFLARGFK 241


>gi|288575930|ref|ZP_05977888.2| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           ATCC 25996]
 gi|288566590|gb|EFC88150.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
           ATCC 25996]
          Length = 184

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 4/187 (2%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
            AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSWSQVAA++ G   N+ RV A
Sbjct: 1   MAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NSGRVFA 57

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTM 159
           +DIL M+ I GV F + DF + D        +   P DLV+ DMA    G+   D  R+ 
Sbjct: 58  LDILPMDEIEGVSFIQGDFRENDVLAQFETLLDDRPLDLVICDMAPNMSGNAVTDQARSF 117

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LCE A  FA+  L  GG FLVK FQG    + +  +++ F  V   KP ASR  S E++
Sbjct: 118 YLCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMAAMREIFGIVQTRKPEASRNRSSEIY 177

Query: 220 LLAKGFR 226
           LL K  R
Sbjct: 178 LLGKNKR 184


>gi|198428770|ref|XP_002127655.1| PREDICTED: similar to FtsJ homolog 1 [Ciona intestinalis]
          Length = 322

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARIT 89
           ++   D Y + A+ +GWRARSA+KLL ++E+  +  +  +++VDL ++PGSWSQV +R  
Sbjct: 5   SKDKRDVYYRLAKEQGWRARSAFKLLHLDEEFNLFHNGVKKVVDLCAAPGSWSQVLSRKL 64

Query: 90  G----SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVLSDMA 144
                 N  + ++VA+D+  M  + GV   + D  ++ + +  I    G + DLV+ D A
Sbjct: 65  RGTEVENNKDVKIVAVDLQAMADLPGVIQLQGDITNVSTAQSIISHFEGESADLVVCDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   ID      L  AA      +L +GG F+ K F+G     +   L+  F+KV 
Sbjct: 125 PDVTGLHDIDEYIQAQLLLAALNITTHVLKLGGTFVAKIFRGKDVTLLYAQLRLFFKKVT 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR  S+E F++ + +
Sbjct: 185 CAKPRSSRNSSIEAFVVCENY 205


>gi|194290076|ref|YP_002005983.1| ribosomal RNA large subunit methyltransferase j [Cupriavidus
           taiwanensis LMG 19424]
 gi|226703293|sp|B3R1S2|RLME_CUPTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|193223911|emb|CAQ69920.1| Ribosomal RNA large subunit methyltransferase J [Cupriavidus
           taiwanensis LMG 19424]
          Length = 221

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 119/221 (53%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+        WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNHS----WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGA 57

Query: 77  SPGSWSQVAARITGSNAN------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ A      +        +  VVAID+L MEP+  V F + DF +   +  +  
Sbjct: 58  APGSWSQYARNKLADSPRARDGRIDGAVVAIDLLPMEPVADVTFIQGDFREESVFRELES 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     G   DLVLSDMA    G    D  R   LC+ A  FA   L   G  LVK F 
Sbjct: 118 VVLDASGGNKIDLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPEGALLVKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+   K+ F+ V   KP ASR +S E F+L +  +
Sbjct: 178 GSGYSQIVEKFKRQFKVVAKRKPKASRDKSSETFILGRYLK 218


>gi|282159201|gb|ADA78592.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 206

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG++PG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTFVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATEFK 205


>gi|319778416|ref|YP_004129329.1| Cell division protein FtsJ [Taylorella equigenitalis MCE9]
 gi|317108440|gb|ADU91186.1| Cell division protein FtsJ [Taylorella equigenitalis MCE9]
          Length = 210

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/203 (40%), Positives = 124/203 (61%), Gaps = 2/203 (0%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S++W+++HINDPYV+ AQ +G+RAR+A+KL++I +  +++     IVDLGSSPGSWSQVA
Sbjct: 7   SKNWIHQHINDPYVKLAQQKGYRARAAFKLIEILDAEKLMHRGDIIVDLGSSPGSWSQVA 66

Query: 86  ARITGSNAN-NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
                 N   + R++A+D+L ME I GV+F + DF D    + + + +G    DLV+SDM
Sbjct: 67  RERLLKNGVIDGRIIALDLLPMEHIEGVEFIQGDFRDETILKALEEKVGFQQVDLVISDM 126

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G    D  R   + E A  FA   L   G  +VK F G   + ++ L KK+F +V
Sbjct: 127 APNLSGISSADSARIQHVVELAVEFATNHLKPQGALIVKAFHGSGFSQLIELFKKNFVRV 186

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
           + +KP ASR +S E F++ K  +
Sbjct: 187 VEIKPKASRDKSSETFIVGKKLK 209


>gi|118602395|ref|YP_903610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|143461559|sp|A1AW32|RLME_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|118567334|gb|ABL02139.1| 23S rRNA Um-2552 2'-O-methyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 207

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 4/206 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +GSS  W++ HIND +V++AQ  G+R+RS YKL+++  K + ++   +++DLG++PG W
Sbjct: 3   KKGSSGRWMSEHINDEFVKKAQKSGYRSRSVYKLIEVINKDKFIKLGDKVLDLGAAPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVL 140
           SQVA +I G +    +V+A DILD++PI GV F + DF     +E +    +    D+VL
Sbjct: 63  SQVAIKIVGKSG---QVIASDILDIKPIDGVDFLRGDFTKDSVYETLLDITMSKKVDVVL 119

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G   ID  ++M LCE A   A++ L   G F VK FQG   N+ + L +  F
Sbjct: 120 SDMAPNMSGQSSIDIPKSMYLCELALDMAIKTLTPLGYFFVKVFQGNGFNEFVKLCRSSF 179

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
             V   KP AS+  S E++LL    +
Sbjct: 180 SFVTIRKPKASKLRSKEVYLLTSKLK 205


>gi|221480608|gb|EEE19062.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii GT1]
          Length = 342

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 6   GSSSRRGLT--QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
               RR  +   +++N++   +S +W+ R I D YV RAQ    R+R+A+KL Q+++   
Sbjct: 98  TGGGRRAYSGEPRIRNKNSSHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDDFL 156

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
             + N+ +VDLG+ PG WSQVA     +     RV+A+D + M+P+    F +       
Sbjct: 157 FFRKNQVVVDLGAYPGGWSQVALDRIRAGGGEGRVIAVDPVAMDPLPHHTFIQGSVGQAG 216

Query: 124 SWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + + + +G    D+VLSDMA   IG ++ DHL    LC  A+    ++L +GG F+ K
Sbjct: 217 TLQALLEELGESKADVVLSDMAPSCIGVKQDDHLNCAELCLFASDLMEQVLKLGGTFVTK 276

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            F G  TN+    L+  F+KV   KP A R ES EM+ + + F
Sbjct: 277 MFMGSETNNFKVYLRTRFKKVSSAKPRACRQESREMYFVCQHF 319


>gi|326513676|dbj|BAJ87857.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 317

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KL+QI+++  I     R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLMQIDQEFNIFHGVERAVDLCAAPGSWSQVLSRNLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                   G +     +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLSSDGKDGGLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V   KP +SR  S+E F + + +
Sbjct: 185 SQVTFAKPKSSRNSSIEAFAVCENY 209


>gi|30679168|ref|NP_851026.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|26983822|gb|AAN86163.1| putative cell division protein [Arabidopsis thaliana]
 gi|332002931|gb|AED90314.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 309

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PTVTFAKPKSSRNSSIEAFAVCENY 209


>gi|268575120|ref|XP_002642539.1| Hypothetical protein CBG20162 [Caenorhabditis briggsae]
          Length = 331

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 1/196 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+   R VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +++    I    G   D+V+ D A    G
Sbjct: 65  EEDEKAKIVAIDLQPMAPIPGVIQLQGDITSVETANQVIEHFSGEKADIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +K++F++V   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLKNGGNFLAKIFRSRNSSLLYAQMKRYFKQVYLAKPR 184

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E F+L   +
Sbjct: 185 SSRQSSCEAFVLCLDY 200


>gi|297679750|ref|XP_002817683.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like isoform
           1 [Pongo abelii]
 gi|297679752|ref|XP_002817684.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like isoform
           2 [Pongo abelii]
          Length = 246

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++
Sbjct: 20  VGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVL 77

Query: 73  DLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDLDSWE 126
           D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + +
Sbjct: 78  DCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQ 137

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            I + + GG  D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ 
Sbjct: 138 RILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 197

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 198 GSQSRQLQRRLTEEFQNVRIIKPEASRRESSEVYFLATQY 237


>gi|241663317|ref|YP_002981677.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
 gi|240865344|gb|ACS63005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
          Length = 221

 Score =  230 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 124/221 (56%), Gaps = 15/221 (6%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  Q     WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG+
Sbjct: 2   AKNKFNQS----WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGA 57

Query: 77  SPGSWSQV------AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           +PGSWSQ       A+        +  +VAIDIL ME I  V F + DF + D +  + +
Sbjct: 58  APGSWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDDVFRQLEE 117

Query: 131 AI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +     GG  DLVLSDMA    G    D  R   + E A  FA+  L   G  L+K F 
Sbjct: 118 IVLEATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFH 177

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G   + I+ + K+HF+ V   KP ASR +S E FLL +  +
Sbjct: 178 GSGYSQIVEMFKRHFRIVAPRKPKASRDKSSETFLLGRQLK 218


>gi|85712945|ref|ZP_01043985.1| 23S rRNA methylase [Idiomarina baltica OS145]
 gi|85693251|gb|EAQ31209.1| 23S rRNA methylase [Idiomarina baltica OS145]
          Length = 208

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 119/209 (56%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +    SS+ WL  H +DP+VQ+AQ  G R+R+ +K+ +I ++ ++++  + +VDLG++P
Sbjct: 2   GKKRSVSSQRWLKEHFDDPFVQKAQKRGLRSRAVFKIEEIQQRDKLIKKGQTVVDLGAAP 61

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WSQ  A     +    +V+A DIL M+PI GV F + DF +    + +   IGG   D
Sbjct: 62  GGWSQYVADYFNGDG---QVIACDILSMDPIAGVDFLQGDFREQAVLDALLSRIGGKNVD 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA    G+  +D  R M L E A     ++L  GG F VK F G    + L  ++
Sbjct: 119 VVLSDMAPNMSGNDNVDQPRAMYLVELALDMCHQVLKPGGSFAVKVFHGQGFEEFLKDVR 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP +SR+ S E++L+A  ++
Sbjct: 179 AAFKTVKTRKPSSSRSRSREVYLVATDYK 207


>gi|303275988|ref|XP_003057288.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461640|gb|EEH58933.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 343

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI++   + +  + +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDDSFDVFKDVKHVVDLCAAPGSWSQVISRRLW 64

Query: 91  --------SNANNTRVVAIDILDMEPILGVKFFKFDFLDL-DSWEFIRQAIGGNPDLVLS 141
                   +  +  ++VAID+  M PI GV   + D   L    E +    G   DL++S
Sbjct: 65  IPARDAGTAAEDMPKIVAIDLQPMAPIEGVVQIQGDITSLAKVNEVLTHFEGKLADLIVS 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  A       +L  GG ++ K F+G     +   LK  F 
Sbjct: 125 DGAPDVTGLHDMDEFMQAQLILAGLAVCAHILRPGGTYIAKVFRGKDVALLYAQLKMFFT 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +V   KP +SR  SVE F++ + FR
Sbjct: 185 QVTCAKPKSSRNSSVEAFVVCQDFR 209


>gi|114611931|ref|XP_518934.2| PREDICTED: hypothetical protein LOC463224 [Pan troglodytes]
 gi|332864346|ref|XP_003318261.1| PREDICTED: hypothetical protein LOC463224 [Pan troglodytes]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/213 (37%), Positives = 125/213 (58%), Gaps = 7/213 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           ++  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++D G++PG
Sbjct: 25  KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84

Query: 80  SWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDLDSWEFIRQAI- 132
           +WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + I + + 
Sbjct: 85  AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG  D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ G  +  +
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 237


>gi|225440636|ref|XP_002278921.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297740237|emb|CBI30419.3| unnamed protein product [Vitis vinifera]
          Length = 316

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLF 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKKGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PIVTFAKPKSSRNSSIEAFAVCENY 209


>gi|50556146|ref|XP_505481.1| YALI0F16049p [Yarrowia lipolytica]
 gi|49651351|emb|CAG78290.1| YALI0F16049p [Yarrowia lipolytica]
          Length = 312

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 33/229 (14%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y ++A+ EGWRARSA+KLLQ++++  +    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQLDQQFHLFDGVQRVVDLCAAPGSWSQVLSRELF 64

Query: 88  -----------------------------ITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
                                           S     ++V++D+  M PI GV   + D
Sbjct: 65  EKRGIEAGSGKTVAGSTFGGKVVTGESTAQKSSTMEKAKIVSVDLQPMAPIAGVTTIQAD 124

Query: 119 FLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                + + I    GG P D V SD A    G   +D      L  +A     ++L  GG
Sbjct: 125 ITHPQTLKMILDEFGGEPADFVCSDGAPDVTGLHDLDEYTQAQLILSALQLTTQLLRPGG 184

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +F+ K F+G   + +   L   F++V   KP +SR  S+E F++ +G++
Sbjct: 185 NFVAKIFRGRDIDLMYFQLGLLFEQVTCAKPRSSRGSSLESFIVCQGYK 233


>gi|222423600|dbj|BAH19769.1| AT5G01230 [Arabidopsis thaliana]
          Length = 309

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDDAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PTVTFAKPKSSRNSSIEAFAVCENY 209


>gi|118497045|ref|YP_898095.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. novicida U112]
 gi|194324280|ref|ZP_03058054.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. novicida FTE]
 gi|143460128|sp|A0Q526|RLME_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|118422951|gb|ABK89341.1| 23S rRNA methylase [Francisella novicida U112]
 gi|194321727|gb|EDX19211.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. novicida FTE]
 gi|328676509|gb|AEB27379.1| Cell division protein ftsJ / Ribosomal RNA large subunit
           methyltransferase J [Francisella cf. novicida Fx1]
          Length = 206

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 128/207 (61%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I  K+Q+ + N  +VDLG++PG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQNKYQLFKPNMFVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATEFK 205


>gi|327282720|ref|XP_003226090.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Anolis
           carolinensis]
          Length = 241

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 123/214 (57%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           ++  G+   WL RH +DPYV++A+   +R RSA+KL++I++KH IL+    +VD G++PG
Sbjct: 25  KAKTGAEHRWLERHFSDPYVKKARQRSYRCRSAFKLIEIDDKHGILRPGLHVVDCGTAPG 84

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI- 132
           +W+QVA +   +           V+  D+L + P+ G  F    D  D  + + IR ++ 
Sbjct: 85  AWAQVAVQRVNAEGSDPDTPVGFVLGFDLLHISPLEGAVFLPHSDLTDPSTRQKIRDSLP 144

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
            G  D+VLSDMA    G R++DH R + LC +    A  +L+ GG  L K ++   +  +
Sbjct: 145 KGKADVVLSDMAPNATGIRELDHDRLIRLCLSLLDLAPHILHPGGTLLCKFWESKESRLL 204

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              L + F++V  +KP ASR ES EM+ LAK ++
Sbjct: 205 QKRLTQDFKEVKSIKPQASRKESAEMYYLAKLYK 238


>gi|116784269|gb|ABK23279.1| unknown [Picea sitchensis]
          Length = 344

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     +     +VAID+  M  I GV   + D     + E  I+   G   DLV+
Sbjct: 65  LPAKAAAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 STVTFAKPKSSRNSSIEAFAVCENY 209


>gi|301631567|ref|XP_002944869.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Xenopus
           (Silurana) tropicalis]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 9   SRRGLTQKVK-NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           SRR L      ++S   + + WL R + DPYV+ AQ   +R RSA+KLL+I+ KH ILQ 
Sbjct: 17  SRRSLHVTCALDKSRTAAEQRWLARQMKDPYVREAQTHNYRCRSAFKLLEIDNKHHILQP 76

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFF-KFDFLD 121
              ++D G++PG+WSQVA     S   +       VV +D+L++ P+ G  F    D  D
Sbjct: 77  GHHVIDCGAAPGAWSQVAVEKVNSLGRDSAASAGFVVGVDLLNIAPLDGAVFLSNSDITD 136

Query: 122 LDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
            D+ + I   +  G  D++LSDMA    G R +DH R +++C +    +  +L  GG FL
Sbjct: 137 FDTQKKIISVLPSGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSERVLLSGGTFL 196

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K + G   N +   L++ FQ V  VKP ASR ES E++LLAK  R+
Sbjct: 197 CKVWDGSEINLVRDRLRQRFQDVRTVKPKASRMESAEVYLLAKLHRQ 243


>gi|89255843|ref|YP_513205.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica LVS]
 gi|115314330|ref|YP_763053.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156501823|ref|YP_001427888.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167010065|ref|ZP_02274996.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367205|ref|ZP_04983235.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica 257]
 gi|290954398|ref|ZP_06559019.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312175|ref|ZP_06802980.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122325637|sp|Q0BNB8|RLME_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|122501138|sp|Q2A4Z7|RLME_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040692|sp|A7NAC9|RLME_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|89143674|emb|CAJ78873.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129229|gb|ABI82416.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253025|gb|EBA52119.1| ribosomal large subunit methyltransferase J [Francisella tularensis
           subsp. holarctica 257]
 gi|156252426|gb|ABU60932.1| ribosomal RNA large subunit methyltransferase J [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 206

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   S++ WL+ H +D YV +A   G+R+R+++K+L+I +K+Q+ + N  +VDLG+SPG 
Sbjct: 2   SKGSSTKKWLHEHTSDYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGASPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
           WS+   +  G N    +++A+D+L+M PI GV+F + DF   ++++ +   +     D V
Sbjct: 62  WSEQVIKYIGKNG---KLIALDLLEMAPIAGVEFIQGDFSSDETYQKLNTLVNNQKIDCV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G++  D  +++ L E A  FA   LN  G F+ K FQG  +++ L L+++ 
Sbjct: 119 ISDMAPNLSGNKTSDQAKSIYLLELALDFANTNLNKNGSFVAKVFQGQGSDEYLKLVRES 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KVI  KP +SRA+S E +++A  F+
Sbjct: 179 FNKVIQFKPKSSRAKSREFYVIATEFK 205


>gi|221504430|gb|EEE30103.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii VEG]
          Length = 342

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 6   GSSSRRGLT--QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
               RR  +   +++N++   +S +W+ R I D YV RAQ    R+R+A+KL Q+++   
Sbjct: 98  TGGGRRAYSGEPRIRNKNSSHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDDFL 156

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
             + N+ +VDLG+ PG WSQVA     +     RV+A+D + M+P+    F +       
Sbjct: 157 FFRKNQVVVDLGAYPGGWSQVALDRIRAGGGEGRVIAVDPVAMDPLPHHTFIQGSVGQAG 216

Query: 124 SWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + + + +G    D+VLSDMA   IG ++ DHL    LC  A+    ++L +GG F+ K
Sbjct: 217 TLQALLEELGESKADVVLSDMAPACIGVKQDDHLNCAELCLFASDLMEQVLKLGGTFVTK 276

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            F G  TN+    L+  F+KV   KP A R ES EM+ + + F
Sbjct: 277 MFMGSETNNFKVYLRTRFKKVSSAKPRACRQESREMYFVCQHF 319


>gi|237841293|ref|XP_002369944.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii ME49]
 gi|211967608|gb|EEB02804.1| ribosomal RNA large subunit methyltransferase J, putative
           [Toxoplasma gondii ME49]
          Length = 342

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 6   GSSSRRGLT--QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
               RR  +   +++N++   +S +W+ R I D YV RAQ    R+R+A+KL Q+++   
Sbjct: 98  TGGGRRAYSGEPRIRNKNSSHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDDFL 156

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
             + N+ +VDLG+ PG WSQVA     +     RV+A+D + M+P+    F +       
Sbjct: 157 FFRKNQVVVDLGAYPGGWSQVALDRIRAGGGEGRVIAVDPVAMDPLPHHTFIQGSVGQAG 216

Query: 124 SWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + + + +G    D+VLSDMA   IG ++ DHL    LC  A+    ++L +GG F+ K
Sbjct: 217 TLQALLEELGESKADVVLSDMAPACIGVKQDDHLNCAELCLFASDLMEQVLKLGGTFVTK 276

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            F G  TN+    L+  F+KV   KP A R ES EM+ + + F
Sbjct: 277 MFMGSETNNFKVYLRTRFKKVSSAKPRACRQESREMYFVCQHF 319


>gi|17554650|ref|NP_497843.1| hypothetical protein R74.7 [Caenorhabditis elegans]
 gi|9910861|sp|Q22031|RRMJ1_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase R74.7;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|5824584|emb|CAA85279.2| C. elegans protein R74.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 337

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 1/196 (0%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y + A+   WRARSA+KL+QI+++ QIL+  RR VDL ++PGSWSQV ++   
Sbjct: 5   SRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLY 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
                 ++VAID+  M PI GV   + D   +D+    I+   G   D+V+ D A    G
Sbjct: 65  EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAPDVTG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA      +L  GG+FL K F+   ++ +   +KK+F+KV   KP 
Sbjct: 125 IHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPR 184

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S E F+L   +
Sbjct: 185 SSRQSSCEAFVLCLDY 200


>gi|156392658|ref|XP_001636165.1| predicted protein [Nematostella vectensis]
 gi|156223265|gb|EDO44102.1| predicted protein [Nematostella vectensis]
          Length = 210

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/210 (38%), Positives = 119/210 (56%), Gaps = 4/210 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS  WL RH+ DPYV++A  + +R RSAYKL+Q+++K+  L     ++D G+SPGSW
Sbjct: 1   RNDSSTRWLRRHLADPYVKKASEDNYRCRSAYKLIQLDDKYHFLLPGHVVIDCGASPGSW 60

Query: 82  SQVAARITGSN--ANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGG-NPD 137
           +QVA      N       VVAID+LD++ I G     + DF    +   I   +     +
Sbjct: 61  TQVAVERVIPNIGGEQGLVVAIDLLDIKAIPGAVIMGRCDFTHKATQTKILSLLPSFGVN 120

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           ++LSDMA  + G+  +DH   + LC++A  F  + L  GG FL K + G  T D + +LK
Sbjct: 121 VILSDMAPNSSGNHSLDHEAILDLCDSAFEFGQKTLRPGGVFLCKLWDGRGTVDFMQMLK 180

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F+ V   KP ASR +S E+++ A GF K
Sbjct: 181 RSFKLVKKCKPQASRKDSPEIYIYAAGFIK 210


>gi|297806107|ref|XP_002870937.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316774|gb|EFH47196.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 309

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                           +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKEGGLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PTVTFAKPKSSRNSSIEAFAVCENY 209


>gi|118594568|ref|ZP_01551915.1| cell division protein FtsJ [Methylophilales bacterium HTCC2181]
 gi|118440346|gb|EAV46973.1| cell division protein FtsJ [Methylophilales bacterium HTCC2181]
          Length = 205

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 124/205 (60%), Gaps = 4/205 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+N H++DPYV +A++ G+R+R+A+KLL+ NEK   L     +VDLGS+PGS
Sbjct: 2   KRSKTSKSWMNEHVSDPYVHKAKIAGYRSRAAFKLLEANEKFNFLTKKMNVVDLGSAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQV +++TG N N   + A+D+L+M PI  V+F K DF + +  + + + +G    DLV
Sbjct: 62  WSQVISQMTGCNGN---IFALDLLEMVPIKNVEFLKGDFREQEMLDSLEKKLGKTSLDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G +  D    + L E A  F+ + L   G FLVK+F G   +  +   +KH
Sbjct: 119 ISDMAPNISGIKTSDQAGIIHLNELALQFSTDWLKPNGCFLVKSFVGAEFDGFVAETRKH 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKG 224
           F+KV   KP +SR  S E+F+  + 
Sbjct: 179 FEKVTTFKPASSRDRSSEIFVFGRN 203


>gi|301096605|ref|XP_002897399.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
 gi|262107090|gb|EEY65142.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
          Length = 302

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 4/196 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ +G+RARSA+KLLQ+++K  +L    R+VDL ++PG WSQV A    
Sbjct: 5   SKDKRDIYYRKAKQQGYRARSAFKLLQLDDKFGLLSGATRVVDLCAAPGGWSQVIAERVP 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIG 149
            ++    ++A+D+++M P+ GV   K D     + + I  Q  G    +V+SD A   +G
Sbjct: 65  KDST---IIAVDLMEMAPLDGVVQLKGDITHKATADEIVAQFRGQKAQVVVSDGAPDVLG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  A    +L++L  GG F+ K F+G   + +   L++ F KV   KP 
Sbjct: 122 LHDLDEYLQAQLVLAGLNISLQILEDGGTFVAKLFRGKEVSLLYAQLRRFFSKVTCAKPK 181

Query: 210 ASRAESVEMFLLAKGF 225
            SR  S E F++ + F
Sbjct: 182 TSRNSSFEAFVVCQDF 197


>gi|30248542|ref|NP_840612.1| FtsJ cell division protein [Nitrosomonas europaea ATCC 19718]
 gi|81436182|sp|Q820A2|RLME_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|30138428|emb|CAD84438.1| FtsJ cell division protein [Nitrosomonas europaea ATCC 19718]
          Length = 206

 Score =  229 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 4/204 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +SR W+  HIND +V++A  EG+R+R+AYKL +I E   +      +VDLG+ PGS
Sbjct: 2   KSARTSRAWIKAHINDNFVRKANHEGYRSRAAYKLREIAEHDALFVPGMTVVDLGAVPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVA    G      +V A+D+LDM+P+ G+ F + DF + +    +  A+GG   DLV
Sbjct: 62  WSQVALESVGPTG---KVFALDMLDMQPLPGMTFIQGDFRENEVLAMLEAALGGKRADLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDM+    G R  D  + M L E A  F  E LN G +FLVK FQG        +++  
Sbjct: 119 ISDMSPNLTGIRVSDQAQGMYLAELALIFCREHLNPGKNFLVKVFQGSDFEAFRQMMQTD 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAK 223
           F KV+  KP ASR  S E++LL  
Sbjct: 179 FSKVVIRKPKASRDRSKELYLLGL 202


>gi|307109488|gb|EFN57726.1| hypothetical protein CHLNCDRAFT_142970 [Chlorella variabilis]
          Length = 325

 Score =  229 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 9/204 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI++   I    R +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDDAFHIFAGVRHVVDLCAAPGSWSQVLSRRLY 64

Query: 91  --------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLS 141
                   +     ++VA+D+  M PI GV   + D     +    I    G + DLV+ 
Sbjct: 65  LPAVAAGRTGEQLPKIVAVDLQPMAPIEGVTQLQGDITSEATARQVISHFHGHHADLVVC 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA      +L  GG  + K F+G     +   LK  F 
Sbjct: 125 DGAPDVTGLHDMDEFVQGQLILAALAIVAHVLVPGGTLVAKVFRGRDIALLYSQLKIFFP 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP +SR  S+E F++ + +
Sbjct: 185 DVTVAKPKSSRNSSIEAFVVCRRY 208


>gi|50311753|ref|XP_455905.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645041|emb|CAG98613.1| KLLA0F18414p [Kluyveromyces lactis]
          Length = 301

 Score =  229 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ +G+RARSA+KLLQ+++    LQ   R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRKAKEQGYRARSAFKLLQLDDDFHFLQQAVRVVDLCAAPGSWSQVLSRRLF 64

Query: 89  -TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYP 146
              S+ ++ ++VA+D+  M PI  V   + D     + + I +   G   D + SD A  
Sbjct: 65  PQSSDNSDRKIVAVDLQPMSPIDNVITLQADITHPKTLQTITELFEGKKADFICSDGAPD 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  +A   +  +L  GG+F+ K F+G   + +   L   F+KVI  
Sbjct: 125 VTGLHDLDEYVQQQLILSALQLSTCLLRKGGNFVAKIFRGRDIDMLYSQLGYLFEKVICA 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F++  G+
Sbjct: 185 KPRSSRGTSLESFIVCLGY 203


>gi|332027855|gb|EGI67913.1| Putative ribosomal RNA methyltransferase [Acromyrmex echinatior]
          Length = 246

 Score =  229 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 6/213 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           ++ + SS+ WL R + DPYV++A+ E +R RSA+KLL+INE+ +IL     +VD G++PG
Sbjct: 29  KNKKHSSQLWLERQLRDPYVEKAKQEKYRCRSAFKLLEINERFKILSPGLTVVDCGAAPG 88

Query: 80  SWSQVAARITGSNANN----TRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-G 133
           SW+QVA  +T +         RV A+D L   P+ G       DF ++ + E + + + G
Sbjct: 89  SWTQVATNLTNAGGKKEGPVGRVYAVDKLPFYPVEGATVLGNMDFTNIKTQETLSKLLQG 148

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D+VLSDMA    G R+IDH   M L  AA  FAL++  +   F+VK + GG T    
Sbjct: 149 DKVDVVLSDMAPNASGVREIDHDNIMLLAYAALRFALQISKVQSTFVVKIWDGGKTQQFE 208

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L K +  V  ++P A+R ES E F LA+ F+
Sbjct: 209 QNLLKFYNSVRAIRPDATRDESTETFFLARRFK 241


>gi|94676772|ref|YP_589062.1| ribosomal RNA large subunit methyltransferase J [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|143459434|sp|Q1LSK2|RLME_BAUCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|94219922|gb|ABF14081.1| ribosomal RNA large subunit methyltransferase J [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 209

 Score =  229 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 4/208 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS  WL   + D YV +AQ +G R+R+ +KL QI +  ++ Q    I+DLG++PG
Sbjct: 4   KKRSASSNRWLQESLKDKYVVQAQKKGLRSRAWFKLDQIQKSDRLFQPYMTIIDLGAAPG 63

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDL 138
           SWSQ      G N +   V+A D+  M P+ GV F + DF +    + I Q +      +
Sbjct: 64  SWSQYVTTQIGKNGH---VIACDLRYMSPLSGVDFIQGDFCNKQVLQAILQRLENKKAQV 120

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           +LSDM+    G  +ID  ++M L E A      +L  GG F+VK FQG    + +C +  
Sbjct: 121 ILSDMSPNFSGKPEIDIPKSMYLVEKALKMCRYLLIPGGTFIVKVFQGDGFYEYICSMHA 180

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V  +KP ASR+ S E++L+AKG +
Sbjct: 181 LFNTVKIIKPDASRSRSREVYLIAKGHK 208


>gi|114051497|ref|NP_001040360.1| cell division protein [Bombyx mori]
 gi|95102628|gb|ABF51252.1| cell division protein [Bombyx mori]
          Length = 298

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---R 87
           ++   D Y + A+ EGWRARSA+KLLQINE++ I     R VDL ++PGSWSQV     R
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFNGVLRAVDLCAAPGSWSQVLTKNLR 64

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYP 146
               N  + ++VA+D+  M  + GVK  + D    ++    I +  G   DLV+ D A  
Sbjct: 65  QNAVNTEDVKIVAVDLQAMAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPD 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L   G F+ K F+G   + +   LK+ F+ V   
Sbjct: 125 VTGLHDIDEYVQSQLLLAALNITTHVLKNEGTFVAKIFRGKDVSLLYSQLKQFFKLVTVS 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F++ + +
Sbjct: 185 KPRSSRNSSIEAFVICEKY 203


>gi|15836699|ref|NP_297387.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|71275932|ref|ZP_00652215.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Dixon]
 gi|71900018|ref|ZP_00682163.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
 gi|170729314|ref|YP_001774747.1| cell division protein [Xylella fastidiosa M12]
 gi|81548421|sp|Q9PH52|RLME_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705325|sp|B0U1F2|RLME_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|9104872|gb|AAF82907.1|AE003863_9 cell division protein [Xylella fastidiosa 9a5c]
 gi|71163309|gb|EAO13028.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Dixon]
 gi|71730228|gb|EAO32314.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
 gi|167964107|gb|ACA11117.1| cell division protein [Xylella fastidiosa M12]
          Length = 213

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 4/205 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H +DP+V++AQ EG R+R+AYKL +I ++ +IL+ N  ++DLG++PG 
Sbjct: 2   SHSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +  G   +  RV+A+DI+ M P++G++F + DF D      +   + G P DLV
Sbjct: 62  WSQQIRKQMG---DRGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQPVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   +  GG FL+K F G  ++D +  L+  
Sbjct: 119 LSDMAPNKSGMDAMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDDYIRQLRHR 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKG 224
           ++KV   KP+ASR  S E+++L  G
Sbjct: 179 YKKVAIRKPLASRKRSPEVYILGDG 203


>gi|262094381|gb|ACY09320.1| cell division protein [Heliconius melpomene rosina]
 gi|262094383|gb|ACY09321.1| cell division protein [Heliconius melpomene rosina]
 gi|262094387|gb|ACY09323.1| cell division protein [Heliconius melpomene rosina]
 gi|262094389|gb|ACY09324.1| cell division protein [Heliconius melpomene rosina]
 gi|262094391|gb|ACY09325.1| cell division protein [Heliconius melpomene rosina]
 gi|262094393|gb|ACY09326.1| cell division protein [Heliconius melpomene rosina]
 gi|262094395|gb|ACY09327.1| cell division protein [Heliconius melpomene rosina]
 gi|262094397|gb|ACY09328.1| cell division protein [Heliconius melpomene rosina]
 gi|262094399|gb|ACY09329.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094403|gb|ACY09331.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094405|gb|ACY09332.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094411|gb|ACY09335.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094415|gb|ACY09337.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094417|gb|ACY09338.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094419|gb|ACY09339.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094421|gb|ACY09340.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094423|gb|ACY09341.1| cell division protein [Heliconius melpomene melpomene]
 gi|262094427|gb|ACY09343.1| cell division protein [Heliconius melpomene rosina]
 gi|262094429|gb|ACY09344.1| cell division protein [Heliconius melpomene rosina]
 gi|262094431|gb|ACY09345.1| cell division protein [Heliconius melpomene rosina]
 gi|262094433|gb|ACY09346.1| cell division protein [Heliconius melpomene rosina]
          Length = 253

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGFR 226
           S+E F++ + ++
Sbjct: 181 SIEAFVICQNYK 192


>gi|7019377|ref|NP_037525.1| putative ribosomal RNA methyltransferase 2 [Homo sapiens]
 gi|9910866|sp|Q9UI43|RRMJ2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase 2; AltName:
           Full=Protein ftsJ homolog 2; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase
 gi|6652820|gb|AAF22488.1|AF093415_1 cell division protein FtsJ [Homo sapiens]
 gi|119607629|gb|EAW87223.1| hCG17134, isoform CRA_b [Homo sapiens]
 gi|119607630|gb|EAW87224.1| hCG17134, isoform CRA_b [Homo sapiens]
          Length = 246

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 128/220 (58%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++
Sbjct: 20  VGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVL 77

Query: 73  DLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDLDSWE 126
           D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + +
Sbjct: 78  DCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQ 137

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            I + + G   D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ 
Sbjct: 138 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 197

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 198 GSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 237


>gi|45201131|ref|NP_986701.1| AGR036Wp [Ashbya gossypii ATCC 10895]
 gi|44985914|gb|AAS54525.1| AGR036Wp [Ashbya gossypii ATCC 10895]
          Length = 306

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ +G+RARSA+KLLQ+N++   L   +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDLYYRKAKEQGFRARSAFKLLQLNDEFHFLDGVQRVVDLCAAPGSWSQVLSRELF 64

Query: 91  SNANNT--RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPT 147
            +  NT  R+VA+D+  M  I  V   + D     +   I +   G   D V SD A   
Sbjct: 65  PDGKNTKKRIVAVDLQPMSRIEHVTTLQADITHPRTLTKIIELFKGEKADFVCSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  +A    + +L  GG F+ K F+G   + +   L   F KV   K
Sbjct: 125 TGLHDLDEYVQQQLILSALKLTVSLLAPGGCFVAKIFRGRDIDMLYSQLGLLFDKVTCAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F++ +G+
Sbjct: 185 PRSSRGTSLESFIVCQGY 202


>gi|226469920|emb|CAX70241.1| FtsJ homolog 1 [Schistosoma japonicum]
          Length = 345

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 12/207 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL         R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 86  ARITGS-----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           ++         +  + ++VA+D+  M PI GV   + D    D+ + I +   G    LV
Sbjct: 65  SKRLWESKSPDDRKSVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFSGKLAQLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D A    G   +D      L  AA      +L +GG F+ K F+G  +  +   L+  
Sbjct: 125 VCDGAPDVTGLHDLDEYVQSHLILAALTICSRVLELGGTFVAKVFRGRDSGLLGSQLRCL 184

Query: 200 FQ-KVIHVKPVASRAESVEMFLLAKGF 225
           F  +V   KP ASR  S+E F++ +GF
Sbjct: 185 FSGQVSFAKPKASRNSSLESFVVCRGF 211


>gi|330805936|ref|XP_003290932.1| ribosomal RNA methyltransferase [Dictyostelium purpureum]
 gi|325078930|gb|EGC32556.1| ribosomal RNA methyltransferase [Dictyostelium purpureum]
          Length = 253

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KL+QI+E++ I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYSIFEDVKRVVDLCAAPGSWSQVLSRRIY 64

Query: 91  SNA--NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
            +    N ++VA+DI +M P+ GV   K D    ++ + I     G+  DL++SD A   
Sbjct: 65  GDGSDPNVKIVAVDIQEMAPLKGVVQIKGDITKYETAKQIISHFDGSLADLIISDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  +A    +  L  GG F+ K F+G   + +   +K  F+ V  VK
Sbjct: 125 TGLHDIDFYGQSQLILSALNIVVHTLKPGGTFVAKMFKGDDMSLMFSQMKLFFEHVSFVK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR  S+E F+L K ++
Sbjct: 185 PKSSRDSSLENFVLCKNYQ 203


>gi|255581073|ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
 gi|223529050|gb|EEF31036.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
          Length = 316

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + N   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLTQDSRDDNLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209


>gi|319944197|ref|ZP_08018473.1| ribosomal RNA large subunit methyltransferase J [Lautropia
           mirabilis ATCC 51599]
 gi|319742492|gb|EFV94903.1| ribosomal RNA large subunit methyltransferase J [Lautropia
           mirabilis ATCC 51599]
          Length = 239

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 20/230 (8%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +++   +  +R WL+ H+NDPYV+ AQ   +RAR+A+KL+ I+E+  +++    +VDLGS
Sbjct: 1   MQSSRSKKVNRAWLHDHLNDPYVKLAQRHHYRARAAFKLIGIDEQDHLIRPGMTVVDLGS 60

Query: 77  SPGSWSQVAARITGSN-------------------ANNTRVVAIDILDMEPILGVKFFKF 117
           +PGSWSQV  R   +                        R+VA+D+L MEPI  V + + 
Sbjct: 61  APGSWSQVVRRRLAAPNLAEDVRKADDLRGEAPQVPIQGRIVALDLLPMEPIPDVNYLQG 120

Query: 118 DFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           DF + D  + +   + GG  DLVLSDMA    G    D  R   L E +  FA   L   
Sbjct: 121 DFREQDVLDRLEALLDGGKVDLVLSDMAPNLSGVGVADTARMQDLAELSVDFASRWLKPD 180

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G  L+K F G   + ++ L K HF  V   KP ASR  S E +LL +  +
Sbjct: 181 GALLIKVFHGSGYSQLVRLFKDHFAVVQPRKPKASRDRSAETYLLGRRLK 230


>gi|262094385|gb|ACY09322.1| cell division protein [Heliconius melpomene rosina]
 gi|262094435|gb|ACY09347.1| cell division protein [Heliconius melpomene rosina]
          Length = 253

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDXVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGFR 226
           S+E F++ + ++
Sbjct: 181 SIEAFVICQNYK 192


>gi|262094425|gb|ACY09342.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDHVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGFR 226
           S+E F++ + ++
Sbjct: 181 SIEAFVICQNYK 192


>gi|226500760|ref|NP_001152207.1| ribosomal RNA methyltransferase 1 [Zea mays]
 gi|195653845|gb|ACG46390.1| ribosomal RNA methyltransferase 1 [Zea mays]
 gi|224035109|gb|ACN36630.1| unknown [Zea mays]
          Length = 318

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+++  I    + +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKHVVDLCAAPGSWSQVLSRNLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                       +   +VAID+  M PI GV   + D  +  + +  IR   G   DLV+
Sbjct: 65  VPAKQSSDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTADVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALAIVTHVLKVGGKFVAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V   KP +SR  S+E F + + +
Sbjct: 185 SQVTFAKPKSSRNSSIEAFAVCENY 209


>gi|71899230|ref|ZP_00681392.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
 gi|71730963|gb|EAO33032.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           Ann-1]
          Length = 213

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 4/205 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H +DP+V++AQ EG R+R+AYKL +I ++ +IL+ N  +VDLG++PG 
Sbjct: 2   SHSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVVDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +  G   ++ RV+A+DI+ M P++G++F + DF D      +   + G P DLV
Sbjct: 62  WSQQIRKQMG---DSGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQPVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   +  GG FL+K F G  ++  +  L+  
Sbjct: 119 LSDMAPNKSGIDVMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDGYIRQLRHR 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKG 224
           ++KV   KP+ASR  S E+++L  G
Sbjct: 179 YKKVAIRKPLASRKRSPEVYILGDG 203


>gi|148225294|ref|NP_001089803.1| FtsJ homolog 2 [Xenopus laevis]
 gi|76779644|gb|AAI06596.1| MGC131369 protein [Xenopus laevis]
          Length = 246

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           +SR     +  +++   + + WL R + DPY++ AQ   +R RSA+KLL+I+ KH IL  
Sbjct: 17  NSRSLYVTRALDKNRTAAEQKWLARQMKDPYIKEAQAHNYRCRSAFKLLEIDSKHHILHP 76

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFF-KFDFLD 121
              ++D G++PG+WSQVA     S   +       VV +D+L++ P+ G  F    D  D
Sbjct: 77  GHHVIDCGAAPGAWSQVAVEKVNSLGRDSAARAGFVVGVDLLNITPLDGAVFLSNSDITD 136

Query: 122 LDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
            D+   I   +  G  D++LSDMA    G R +DH R +++C +    +  +L  GG FL
Sbjct: 137 SDTQRKIISVLPSGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSQRVLLPGGTFL 196

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K + G   + +   L++ FQ V  VKP ASR ES E++LLAK  ++
Sbjct: 197 CKVWDGSEISLVRDRLRQRFQDVRTVKPKASRMESAEIYLLAKMHKQ 243


>gi|117926296|ref|YP_866913.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetococcus sp. MC-1]
 gi|143460465|sp|A0LC14|RLME_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|117610052|gb|ABK45507.1| 23S rRNA Um-2552 2'-O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 214

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 11/214 (5%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-------ILQSNRRIVD 73
             + SS+ WL  H NDPYVQ+A+ EG+R+R+AYKL+++ E  +       ++     +V+
Sbjct: 3   KQRPSSKRWLREHHNDPYVQQARREGYRSRAAYKLMELQEVVKEDGKSLLLIPVGANVVE 62

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI- 132
           LG++PG W+QVA ++ G   +   VV ID+L M+P+ G +    DFLD      ++  + 
Sbjct: 63  LGAAPGGWTQVAVKLAGVEGS---VVGIDLLAMDPVPGAEILVGDFLDDAMLAQLQGLLH 119

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
            G  D+VLSDMA    G +  D LR  +L EAA  F  E L  GG+F VK F G   +D+
Sbjct: 120 EGRVDVVLSDMAPNMCGVKSADQLRGEALAEAAFQFVEENLKTGGNFAVKLFNGPGFHDM 179

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +   +  F  V  VKP +SR+ S E +L+  GF+
Sbjct: 180 VKQARAMFTVVKVVKPDSSRSRSPEHYLVGMGFK 213


>gi|294948998|ref|XP_002786001.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
 gi|239900109|gb|EER17797.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
          Length = 297

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARI 88
           L++   D Y + A+ EG+RARSAYKLLQ++E+  IL  +  R+VDL ++PGSWSQV ++ 
Sbjct: 4   LSKDKRDIYYRLAKEEGYRARSAYKLLQVDEQFHILTDDLERVVDLCAAPGSWSQVLSKK 63

Query: 89  TGSN------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
              N           +V++D+ +M PI  V   + D     + + +    GG   DLV+ 
Sbjct: 64  LCENLTGSDDKKKPLIVSVDLQEMAPIPDVTCIQGDITSEKTVKEVLDCFGGQLSDLVVC 123

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA      +L  GG F+ K F+G   + +   +   F+
Sbjct: 124 DGAPDVTGMHDMDEYVQFQLLLAALNITTLLLKPGGSFVAKVFRGENVDLLYAKMYVFFE 183

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP +SR  SVE F++ K FR
Sbjct: 184 CVWVAKPRSSRNSSVESFIVCKNFR 208


>gi|328783221|ref|XP_003250253.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
           [Apis mellifera]
          Length = 251

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 81/213 (38%), Positives = 125/213 (58%), Gaps = 6/213 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  + SS+ WL R I DPYV+ A+ E +R RSAYKLL+INE+ +IL+  + ++D G++PG
Sbjct: 29  KGKKHSSQLWLTRQIEDPYVELAKRENYRCRSAYKLLEINERFKILEPGKIVIDCGAAPG 88

Query: 80  SWSQVAARITGSNANN----TRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGG 134
           SW+QVA ++T +NA        V+ ID   + PI G       DF+   S   I   + G
Sbjct: 89  SWTQVAVKLTNANAKQKSAIGTVLGIDKQPIYPIEGATLLSGMDFMAATSQNKILNILNG 148

Query: 135 -NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              ++ LSDMA    G R +DH   M L  +A  FAL++++I G F+ K + G  +  + 
Sbjct: 149 RKVNVFLSDMAPNASGIRDLDHENIMKLVYSALKFALQIIHINGIFVCKLWDGKKSLQLE 208

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L + F+ V +++P A+R ES E FL+A+ F+
Sbjct: 209 KDLTRFFKYVKNIRPKATRDESTEKFLIAREFK 241


>gi|255083873|ref|XP_002508511.1| predicted protein [Micromonas sp. RCC299]
 gi|226523788|gb|ACO69769.1| predicted protein [Micromonas sp. RCC299]
          Length = 327

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI++   IL++ + +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDDSFDILKNVKNVVDLCAAPGSWSQVLSRRIY 64

Query: 91  --------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVL 140
                    + +  +++AID+  M PI G+   + D   +   E I      G   DLV+
Sbjct: 65  LPAKEKGLPDEDMPKLIAIDLQPMAPIEGITTIQGDMTSMAKVEEILAHFTDGRKADLVI 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD A    G   +D      L  A       +L  GG ++ K F+G     +   LK  F
Sbjct: 125 SDGAPDVTGLHDMDEFMQAQLILAGLTVCTHILADGGTYVAKIFRGKDCALLYSQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           ++V   KP +SR  S+E F++ + +
Sbjct: 185 KQVTCAKPKSSRNSSIEAFVVCQEY 209


>gi|28198008|ref|NP_778322.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182680634|ref|YP_001828794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa M23]
 gi|81439222|sp|Q87F66|RLME_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705324|sp|B2I696|RLME_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|28056068|gb|AAO27971.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182630744|gb|ACB91520.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa M23]
 gi|307579093|gb|ADN63062.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 213

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 124/205 (60%), Gaps = 4/205 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ WL  H +DP+V++AQ EG R+R+AYKL +I ++ +IL+ N  ++DLG++PG 
Sbjct: 2   SHSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ   +  G   ++ RV+A+DI+ M P++G++F + DF D      +   + G P DLV
Sbjct: 62  WSQQIRKQMG---DSGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQPVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G   +D  R M L E A  FA   +  GG FL+K F G  ++  +  L+  
Sbjct: 119 LSDMAPNKSGIDVMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDGYIRQLRHR 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKG 224
           ++KV   KP+ASR  S E+++L  G
Sbjct: 179 YKKVAIRKPLASRKRSPEVYILGDG 203


>gi|325982670|ref|YP_004295072.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas sp. AL212]
 gi|325532189|gb|ADZ26910.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas sp. AL212]
          Length = 205

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 132/207 (63%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +S+ W+  H+ND +V++A+ EG+R+R+AYKLL+I EK QIL+    +VDLG++PGS
Sbjct: 2   KRAKTSKAWMKEHVNDFFVKQAKKEGYRSRAAYKLLEITEKDQILKPGLTVVDLGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQVA+   G      +V+A+DIL+M P+ GV+F + DF +  +   +++ +G +  DLV
Sbjct: 62  WSQVASHKIGRGG---KVIAVDILEMAPLPGVEFIQGDFREEYAIVELKKHLGNDQLDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDM+    G    D  R+M L E A  FALE LN GG+FLVK FQG   +  L  ++  
Sbjct: 119 ISDMSPNMSGIVISDQARSMYLAELALAFALEQLNYGGNFLVKVFQGRDFDQFLFDMRAG 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+ VI  KP ASR  S E++LL  G +
Sbjct: 179 FKNVIIRKPKASRDRSNELYLLGLGKK 205


>gi|20090152|ref|NP_616227.1| 23S RNA methyltransferase J [Methanosarcina acetivorans C2A]
 gi|74532956|sp|Q8TR92|RLME_METAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|19915136|gb|AAM04707.1| 23S RNA methyltransferase J [Methanosarcina acetivorans C2A]
          Length = 272

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y  +A+ EG+R+R+++KL QINEKH +++    +VDLG++PG W QVA +++
Sbjct: 1   MARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
           G      +V+ +D+  + PI GV+  + D     + + I +A+G    D+VL D A    
Sbjct: 61  G-----GKVLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVLCDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   DH R++ L  +A   A ++L   G+F+VK FQG   ND L  ++ +F  V    P
Sbjct: 116 GNWSYDHARSIELTTSALECAKKILKPKGNFVVKVFQGDMFNDYLEKVRDNFVHVKAYSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR++S E++++ K F
Sbjct: 176 QASRSQSAEIYVIGKKF 192


>gi|291415281|ref|XP_002723882.1| PREDICTED: FtsJ homolog 2 [Oryctolagus cuniculus]
          Length = 740

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 9/226 (3%)

Query: 10  RRGLTQKVKNR--SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           RRG  Q    R  SC G+   WL RH+ DP+V+ A+ E +R RSA+KLL+++ KH+IL+ 
Sbjct: 13  RRGPVQAAGGRRESCSGAEHRWLQRHLRDPFVKAARAESYRCRSAFKLLEMDRKHRILRP 72

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLD 121
             R++D G++PGSWSQVA +   +   +       V+ +D+L + P+ G  F    D +D
Sbjct: 73  GLRVLDCGAAPGSWSQVAVQRVNAAGTDPSSPVGFVLGVDVLHVFPLEGATFLCPADVMD 132

Query: 122 LDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
             +W  IR+ + GG  D+VLSDMA    G R +DH R +SLC A    A ++L  GG  L
Sbjct: 133 PGAWPRIRELLPGGVADVVLSDMAPNATGIRALDHDRLISLCLALVDLAPDLLQPGGTLL 192

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            KT+ G  ++ +   L++ F  V  VKP ASR ES E++LLA   R
Sbjct: 193 CKTWAGSQSHRLQSRLREEFLSVRAVKPEASRKESAEVYLLATQHR 238


>gi|301111504|ref|XP_002904831.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
 gi|262095161|gb|EEY53213.1| ribosomal RNA methyltransferase, putative [Phytophthora infestans
           T30-4]
          Length = 256

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 8/200 (4%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-------AAR 87
            D Y ++A+  G+RARSA+KLLQ++E+   L++ +R VDL ++PGSWSQV       A+ 
Sbjct: 9   RDIYYRKAKEVGFRARSAFKLLQLDEQFDFLRNVQRAVDLCAAPGSWSQVLSRKLYDASN 68

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYP 146
           +   ++++ R++++D+ +M PI GV+  + D     + E I     G    +V+SD A  
Sbjct: 69  VQSVDSDDVRIMSVDLQEMAPIAGVQLLQGDITSKRTAEQIISHFHGAKAQVVVSDGAPD 128

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   ID      L  AA      +L  GG F+ K F+    + +   L   F+ V   
Sbjct: 129 VTGVHDIDEFVQAELLAAALNITTHVLEEGGAFVAKIFRCEQYDLLATQLSVFFESVSCS 188

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP++SRA+S E F++ +GFR
Sbjct: 189 KPMSSRAQSNEAFVVCQGFR 208


>gi|21228390|ref|NP_634312.1| methyltransferase [Methanosarcina mazei Go1]
 gi|74523704|sp|Q8PUP4|RLME_METMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|20906862|gb|AAM31984.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 268

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y  +A+ EG+R+R+++KL QINEKH +++    +VDLG++PG W QVA +++
Sbjct: 1   MARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
           G      +V+ +D+  ++PI GV+  + D     + + I + +G    D+VL D A    
Sbjct: 61  G-----GKVLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVGEKGADVVLCDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   DH R++ L  +A   A ++L   G+F VK FQG   ND L  ++ +F +V    P
Sbjct: 116 GNWSYDHARSIELATSALECAKKILKPKGNFAVKVFQGDMFNDYLDEVRNNFVRVKAYSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR++S E++++ K F
Sbjct: 176 QASRSQSAEIYIIGKKF 192


>gi|195390727|ref|XP_002054019.1| GJ23026 [Drosophila virilis]
 gi|194152105|gb|EDW67539.1| GJ23026 [Drosophila virilis]
          Length = 313

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y ++A+ EGWRARSA+KL+ INE+  IL   RR VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKEEGWRARSAFKLMHINEQFGILNDVRRAVDLCAAPGSWSQVLSRKLF 64

Query: 88  ---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVL 140
              +T    +  +++A+D+  M PI GV   + D     + E I    G        LV+
Sbjct: 65  DSCLTDDEKSEVKIIAVDLQAMAPIRGVIQLQGDITKESTAEAIIAHFGNDADQKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  +A   A  +L  GG F+ K F+G   + +   +   F
Sbjct: 125 CDGAPDVTGVHEMDEYMQNQLIVSALSIATFVLETGGTFVAKIFKGNANSLLESQMLTFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           +     KP +SR  S+E F++  GFR
Sbjct: 185 ENFHIYKPPSSRPSSIEAFVVCTGFR 210


>gi|322796151|gb|EFZ18727.1| hypothetical protein SINV_05439 [Solenopsis invicta]
          Length = 359

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI+ +  I     + VDL ++PGSWSQV AR   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDSECHIFDGVSKAVDLCAAPGSWSQVLARKLK 64

Query: 91  SN---------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVL 140
            N         A+  ++VA+D+  M P+ GV   + D  + ++  E I        DLV+
Sbjct: 65  ENYEKASEKGSASPPKIVAVDLQAMAPLEGVIQLQGDITNTNTAKEIIAHFDNTRADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA   A  +L  GG F+ K F+      +   L+  F
Sbjct: 125 CDGAPDVTGLHDMDIFIQSQLLLAALNIATHILRPGGTFVAKIFRAKDVTFLYAQLRIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F++ K +
Sbjct: 185 PYVYCTKPSSSRNSSIEAFVVCKDY 209


>gi|302846344|ref|XP_002954709.1| hypothetical protein VOLCADRAFT_102215 [Volvox carteri f.
           nagariensis]
 gi|300260128|gb|EFJ44350.1| hypothetical protein VOLCADRAFT_102215 [Volvox carteri f.
           nagariensis]
          Length = 297

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 7/202 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D + ++A+ EGWRARSAYKLLQI+E   I       VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIFYRKAKEEGWRARSAYKLLQIDEAFDIFSGVAHAVDLCAAPGSWSQVLSRKLY 64

Query: 88  ---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDM 143
              +   + +   +VA+D+  M PI GV   + D     + +  I    G   DLV+ D 
Sbjct: 65  LPAVRSGSPSPPTIVAVDLQPMAPIEGVIQLQGDITSEVTAKQVISHFDGQPADLVVCDG 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L  GG F+ K F+G     +   LK  F +V
Sbjct: 125 APDVTGLHDLDEYVQAQLLLAALSIVCAVLRPGGTFVAKIFRGKDVALLYSQLKLLFPEV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SR  S+E F++ + F
Sbjct: 185 YVAKPKSSRNSSIEAFVVGRRF 206


>gi|156058214|ref|XP_001595030.1| hypothetical protein SS1G_03118 [Sclerotinia sclerotiorum 1980]
 gi|154700906|gb|EDO00645.1| hypothetical protein SS1G_03118 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 347

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                   ++ +V +D+  ++PI  V  F+ D         IR        D VL D A 
Sbjct: 64  ETM---PVSSLIVGVDLSPIKPIPRVITFQSDITTEKCRATIRTHFKSWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDSFNQAELALQSLKLATEFLAPGGTFVTKVFRSKDYNSLLWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCQGFK 201


>gi|262094409|gb|ACY09334.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 4/192 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E  ++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTAHEIXKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGFR 226
           S+E F++ + ++
Sbjct: 181 SIEAFVICQNYK 192


>gi|292611954|ref|XP_683228.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Danio
           rerio]
          Length = 259

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/215 (33%), Positives = 120/215 (55%), Gaps = 7/215 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    + + WL R ++DP+V+ A  + +R RSA+KL+++++K+++L+    ++D G++PG
Sbjct: 44  KGKSTADKRWLIRQLSDPFVKAAHEQNYRCRSAFKLIEMDDKYRLLKPGFTVIDCGAAPG 103

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFFK-FDFLDLDSWEFIRQAI- 132
           +WSQVA +   S           V+ IDIL + P+ G +F    D     +   + + + 
Sbjct: 104 AWSQVAVQRVNSTGESVDLPKGSVIGIDILHIFPLDGAQFLTNHDITSPSTHTALERLLP 163

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               D++LSDMA    G R++DH R +S+C +    A ++L  GG  + K + GG  + +
Sbjct: 164 EAGADVILSDMAPNASGFRELDHERLVSMCLSMLDLADKVLRPGGSLICKYWDGGLAHML 223

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L   FQ V  VKP ASR ES E+F LA+  +K
Sbjct: 224 QQRLFSAFQDVRTVKPRASRKESAELFFLARMLKK 258


>gi|294901600|ref|XP_002777432.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
 gi|239885068|gb|EER09248.1| cell division protein, putative [Perkinsus marinus ATCC 50983]
          Length = 297

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARI 88
           L++   D Y + A+ EG+RARSAYKLLQ++E+  IL  +  R+VDL ++PGSWSQV ++ 
Sbjct: 4   LSKDKRDIYYRLAKEEGYRARSAYKLLQVDEQFHILTDDLERVVDLCAAPGSWSQVLSKK 63

Query: 89  TGSN------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLS 141
              N           +V++D+ +M PI  V   + D     + + +    GG   DLV+ 
Sbjct: 64  LCENLRGSDDRKKPLIVSVDLQEMAPIPDVTCIQGDITSEKTVKEVLDCFGGQLSDLVVC 123

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA      +L  GG F+ K F+G   + +   +   F+
Sbjct: 124 DGAPDVTGMHDMDEYVQFQLLLAALNITTLLLKPGGSFVAKVFRGENVDLLYAKMYVFFE 183

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP +SR  SVE F++ K FR
Sbjct: 184 CVWVAKPRSSRNSSVESFIVCKNFR 208


>gi|262094413|gb|ACY09336.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 102/192 (53%), Gaps = 4/192 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA       L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHXLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGFR 226
           S+E F++ + ++
Sbjct: 181 SIEAFVICQNYK 192


>gi|89365951|gb|AAI14515.1| FtsJ homolog 2 (E. coli) [Homo sapiens]
          Length = 246

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 129/220 (58%), Gaps = 9/220 (4%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+ + R++
Sbjct: 20  VGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPSLRVL 77

Query: 73  DLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDLDSWE 126
           D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + +
Sbjct: 78  DCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQ 137

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            I + + G   D++LSDMA    G R +DH R +SLC        ++L  GG FL KT+ 
Sbjct: 138 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 197

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  +  +   L + FQ V  +KP ASR ES E++ LA  +
Sbjct: 198 GSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQY 237


>gi|66504555|ref|XP_392223.2| PREDICTED: putative ribosomal RNA methyltransferase 1-like isoform
           1 [Apis mellifera]
          Length = 370

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQI+ +  IL    + VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRRAKEEGWRARSAFKLLQIDNECHILDGVNKAVDLCAAPGSWSQVLSRRLN 64

Query: 91  SNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVL 140
            N             ++VA+D+  M P+ GV   + D  ++D+ + I         DLV+
Sbjct: 65  ENYKKALETGNAIPPKIVAVDLQAMAPLEGVIQIQGDITNIDTAKQIISHFDNEQADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L  GG F+ K F+      +   LK  F
Sbjct: 125 CDGAPDVTGLHDMDIYIQSQLLLAALNITTHILKQGGTFVAKIFRAKDVTLLYAQLKIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F++ K +
Sbjct: 185 PYVYCTKPSSSRNSSIEAFVVCKDY 209


>gi|194227880|ref|XP_001493665.2| PREDICTED: similar to Putative ribosomal RNA methyltransferase 1
           (rRNA (uridine-2-O-)-methyltransferase) [Equus caballus]
          Length = 301

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 97/186 (52%), Gaps = 2/186 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E IR   G   DLV+ D A    G
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAQEIIRHFEGCPADLVVCDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L  GG F+ K F+G     I   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQLRVFFSSVLCAKPR 183

Query: 210 ASRAES 215
           +SR  S
Sbjct: 184 SSRNSS 189


>gi|123446753|ref|XP_001312124.1| cell division protein [Trichomonas vaginalis G3]
 gi|121893960|gb|EAX99194.1| cell division protein, putative [Trichomonas vaginalis G3]
          Length = 244

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 107/193 (55%), Gaps = 2/193 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D + + A+ EGWRARSA+KL+Q+ +  ++  +  R+VDL ++PGSWSQV A+   S   
Sbjct: 8   RDTFYRAAKQEGWRARSAFKLIQVADHFRLFDNVTRVVDLCAAPGSWSQVCAQRL-SKVP 66

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKI 153
           N+ +VA+D+  M PI GV   + D    ++ + +  A+ G   DLV+SD A    G   +
Sbjct: 67  NSAIVAVDLQPMAPIPGVIQIRGDITSKETAQQVIDAMNGKKADLVISDGAPDVTGLHDL 126

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  +A   A  ML  GG F+ K F G    D+   L   F+ V  +KP ASR 
Sbjct: 127 DEYMQSQLVFSAFNIACFMLREGGTFMAKIFTGRDIQDLYSSLSPFFETVTAMKPRASRV 186

Query: 214 ESVEMFLLAKGFR 226
            S+E F++ +GF+
Sbjct: 187 ASLESFVVCQGFK 199


>gi|156836549|ref|XP_001642330.1| hypothetical protein Kpol_251p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112834|gb|EDO14472.1| hypothetical protein Kpol_251p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 313

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARI 88
           ++   D Y ++A+ +G+RARSA+KLLQ+NE+   L   + +R+VDL ++PGSWSQV +R 
Sbjct: 5   SKDKRDLYYRKAKEQGYRARSAFKLLQLNEQFHFLDDPNLKRVVDLCAAPGSWSQVLSRK 64

Query: 89  ------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLS 141
                    N  + +++A+D+  M PI  V   + D     +   I +  G    D V S
Sbjct: 65  LFTEDPDKENTKDKKIIAVDLQPMSPIDNVITLQADITHPKTLAKILELFGNEKADFVCS 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  +A      +L  GG F+ K F+G   + +   L   F+
Sbjct: 125 DGAPDVTGLHDLDEYVQQQLIMSALQLTTCILKTGGTFIAKIFRGRDIDLLYSQLGFLFK 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           +VI  KP +SR  S+E F++   +
Sbjct: 185 RVICAKPRSSRGTSLEAFIVCMDY 208


>gi|332025843|gb|EGI65999.1| Putative ribosomal RNA methyltransferase 1 [Acromyrmex echinatior]
          Length = 397

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI+ +  I     + VDL ++PGSWSQV AR   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDSECHIFDGVSKAVDLCAAPGSWSQVLARKLT 64

Query: 91  SNANNT---------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
            N             ++VA+D+  M P+ GV   + D  +  + E I         DLV+
Sbjct: 65  ENYKKALEKGPASKPKIVAVDLQAMAPLEGVIQLQGDITNSSTAEQIIAYFDNSRADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA   A  +L  GG F+ K F+    + +   L+  F
Sbjct: 125 CDGAPDVTGLHDMDIFIQSQLLLAALNIATYILRPGGTFVAKIFRAKDVSLLYAQLRIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F++ K +
Sbjct: 185 PYVYCTKPSSSRNSSIEAFVVCKDY 209


>gi|66814044|ref|XP_641201.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
 gi|74855831|sp|Q54VA8|RRMJ1_DICDI RecName: Full=rRNA methyltransferase 1 homolog; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 1
 gi|60469225|gb|EAL67220.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
          Length = 270

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KL+QI+E++QI +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLSRRIY 64

Query: 91  SNANNT--RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
            +  +   ++VA+D+ +M P+ GV   K D    ++ + I     G+  DL++SD A   
Sbjct: 65  GDGKDPDVKIVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLADLIISDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  +A       L IGG F+ K F+G   + +   +K  F+ V  VK
Sbjct: 125 TGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR  S+E F+L + ++
Sbjct: 185 PSSSRESSLENFILCRNYQ 203


>gi|262094407|gb|ACY09333.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTXHEIIKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHVLKEGGVFVAKIFRGKDXTLLYSQLKLFFDYVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGF 225
           S+E F++ + +
Sbjct: 181 SIEAFVICQNY 191


>gi|256075992|ref|XP_002574299.1| ribosomal RNA methyltransferase [Schistosoma mansoni]
 gi|238659500|emb|CAZ30532.1| ribosomal RNA methyltransferase, putative [Schistosoma mansoni]
          Length = 300

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 11/206 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN----RRIVDLGSSPGSWSQVAA 86
           +R   D Y + A+ EGWRARSAYKLLQI++++ I  +      R+VDL ++PGSWSQV +
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGIFSTENTLLERVVDLCAAPGSWSQVLS 64

Query: 87  RITGS-----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVL 140
           +         +  + ++VA+D+  M PI GV   + D    D+ + I +   G    LV+
Sbjct: 65  KRLWESKSPEDQKSVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFDGKLAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  +  +   L+  F
Sbjct: 125 CDGAPDVTGLHDLDEYVQSHLILAAVTICSRVLELGGTFVAKVFRGRDSGLLGSQLRCLF 184

Query: 201 Q-KVIHVKPVASRAESVEMFLLAKGF 225
             +V   KP ASR  S+E F++ +GF
Sbjct: 185 SGEVSFAKPRASRNSSLESFVICRGF 210


>gi|114330999|ref|YP_747221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas eutropha
           C91]
 gi|122314099|sp|Q0AHC6|RLME_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|114308013|gb|ABI59256.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosomonas eutropha C91]
          Length = 206

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 113/204 (55%), Gaps = 4/204 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               +SR W+  HIND +V++A  EG+R+R+AYKL +I E+  +      +VDLG+SPGS
Sbjct: 2   KSARTSRAWIKAHINDNFVRKANHEGYRSRAAYKLQEIAERDALFSPGMTVVDLGASPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           WSQVA    G      +V A+D+LDM+ + G  F + DF +      + + + G   DLV
Sbjct: 62  WSQVALESVGPTG---KVFALDMLDMQSLPGATFIQGDFRENGVLAALEKVLDGKRADLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDM+    G R  D    M L E A  F  E LN G +FLVK FQG        L++  
Sbjct: 119 ISDMSPNLTGIRVSDQAHGMYLAELALMFCREHLNPGENFLVKVFQGSDFEAFRQLMQAD 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAK 223
           F KV+  KP ASR  S E++LL  
Sbjct: 179 FAKVVIRKPKASRDRSKELYLLGL 202


>gi|281208196|gb|EFA82374.1| rRNA methyltransferase [Polysphondylium pallidum PN500]
          Length = 274

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 110/199 (55%), Gaps = 3/199 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI++ H I    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDDDHNIFGGVKRVVDLCAAPGSWSQVLSRRIY 64

Query: 91  SNA--NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPT 147
            +    + ++VA+DI +M P+ GV   K D   L +   I     G+  DLV+SD A   
Sbjct: 65  GDGSDPDVKIVAVDIQEMAPLKGVLQIKGDITKLTTVNQIISHFDGSLADLVVSDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   ID      L  +A      +L  GG F+ K F+G     +   +K  F+KV  VK
Sbjct: 125 TGLHDIDFYGQAQLILSAFNITTHVLCRGGTFVAKMFKGNDMTLMYNQMKLFFEKVSFVK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR  S+E F+L + ++
Sbjct: 185 PKSSRDSSLENFILCQNYQ 203


>gi|109065839|ref|XP_001086161.1| PREDICTED: putative ribosomal RNA methyltransferase 2 isoform 2
           [Macaca mulatta]
          Length = 246

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 9/220 (4%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
             + KNR+  G+   WL RH+ DP+V+ A++  +R RSA+KLL++NE+HQIL+   R++D
Sbjct: 21  GSRCKNRT--GAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLD 78

Query: 74  LGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFFK-FDFLDLDSWEF 127
            G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F    D  D  + + 
Sbjct: 79  CGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQR 138

Query: 128 IRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           I + + GG  D++LSDMA    G R +DH R +SLC        ++L   G FL KT+ G
Sbjct: 139 ILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAG 198

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++ +   L + FQ V  +KP ASR ES E++ LA  ++
Sbjct: 199 SQSHRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQ 238


>gi|123977189|ref|XP_001330767.1| cell division protein [Trichomonas vaginalis G3]
 gi|121912578|gb|EAY17398.1| cell division protein, putative [Trichomonas vaginalis G3]
          Length = 244

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 107/193 (55%), Gaps = 2/193 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D + + A+ EGWRARSA+KL+Q+ +  ++  +  R+VDL ++PGSWSQV A+   S   
Sbjct: 8   RDTFYRAAKQEGWRARSAFKLIQVADHFRLFDNVTRVVDLCAAPGSWSQVCAQKL-SKVP 66

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKI 153
           N+ +VA+D+  M PI GV   + D    ++ + +  A+ G   DLV+SD A    G   +
Sbjct: 67  NSAIVAVDLQPMAPIPGVIQIRGDITSKETAQQVIDAMNGKKADLVISDGAPDVTGLHDL 126

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  +A   A  ML  GG F+ K F G    D+   L   F+ V  +KP ASR 
Sbjct: 127 DEYMQSQLVFSAFNIACFMLREGGTFMAKIFTGRDIQDLYSSLSPFFETVTAMKPRASRV 186

Query: 214 ESVEMFLLAKGFR 226
            S+E F++ +GFR
Sbjct: 187 ASLESFVVCQGFR 199


>gi|206598233|gb|ACI16035.1| ribosomal RNA methyltransferase [Bodo saltans]
          Length = 321

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 2/197 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EG+RARSAYKLLQI+E+  +  +  + VDL ++PGSWSQV      
Sbjct: 5   SKDKRDMYYRKAKEEGYRARSAYKLLQIDEELDVFTNVTKAVDLCAAPGSWSQVLTAKLP 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
                 R+VA+D+ +M PI GV   + D     +   +   +G    +LV+ D A    G
Sbjct: 65  QTPER-RIVAVDLQEMAPIAGVVCIQGDITTEKTANEVIGRLGDVKAELVICDGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
             ++D      L  AA      +L  GG F+ K F+G  T  ++   +  F+ V+ +KP 
Sbjct: 124 LHELDEYVQHQLLLAALNITTFVLAPGGTFVTKMFRGPNTPFLVAKSEMFFENVMIMKPK 183

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR  S+E F++ + FR
Sbjct: 184 SSRNASMEAFMVCQNFR 200


>gi|300310714|ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073499|gb|ADJ62898.1| 23S rRNA methyltransferase (Cell division protein FtsJ) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 116/205 (56%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +++WL+ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG +PGSW Q  
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYV 66

Query: 86  ARI---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLS 141
                       +  ++ +DIL M+PI  V + + DF + +    +   + G   DLVLS
Sbjct: 67  RNKLAGAEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGRKADLVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   L + A  FA   +  GG  LVK F G   N+++   +  F+
Sbjct: 127 DMAPNLSGVAIADAARVEYLIDLAIDFAQLHMKPGGSLLVKCFNGTGYNELVHKFRAEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V+  KP ASR +S E+FLL K  +
Sbjct: 187 TVMSKKPKASRDKSSEIFLLGKILK 211


>gi|145589197|ref|YP_001155794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189040319|sp|A4SXL6|RLME_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|145047603|gb|ABP34230.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 224

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 116/224 (51%), Gaps = 18/224 (8%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
            KN+  +     WL  H+ DPYV+ AQ EG+RAR+ YKL +I+E+  ++++   IVDLGS
Sbjct: 2   AKNKFNKS----WLQDHLTDPYVKMAQKEGYRARAVYKLSEIDEQDHLIKAGMTIVDLGS 57

Query: 77  SPGSWSQVAARI----------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           +PGSWSQ                 S   + +++AIDIL ME I  V F + DF + +   
Sbjct: 58  APGSWSQYVRNRLTELGKSNPKIESGKPDGQIIAIDILPMEDIADVSFIQGDFREEEGLA 117

Query: 127 FIRQAI----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            +   +     G  DLVLSDMA    G    D  R   L E A  FA   L   G  L+K
Sbjct: 118 ALEALLPKSAEGKVDLVLSDMAPNLSGVGVADSARMAFLAEIALDFATAHLKPEGALLIK 177

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F G   + I+   KK F+ V   KP ASRA+S E+FLL K  +
Sbjct: 178 CFNGSGYSQIVESFKKVFKTVASRKPKASRAKSSEIFLLGKNLK 221


>gi|303251539|ref|ZP_07337713.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649537|gb|EFL79719.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 187

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 4/188 (2%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           Q+A  +  R+R+ +KL +I +  ++ +    +VDLG++PG WSQ A    GS     R++
Sbjct: 2   QKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQYAVTQIGSKG---RII 58

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRT 158
           A DILDM PI+GV F + DF +      + + +G +  D+V+SDMA    G   +D  R 
Sbjct: 59  ACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRA 118

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           M L E A     ++L   G F+VK FQG   ++ L  ++  F  V   KP ASR  S E+
Sbjct: 119 MYLVELALDMCRQVLAPKGSFVVKVFQGEGFDEYLRDIRAMFTAVKVRKPEASRDRSREV 178

Query: 219 FLLAKGFR 226
           +++A G++
Sbjct: 179 YIVATGYK 186


>gi|224146194|ref|XP_002325916.1| predicted protein [Populus trichocarpa]
 gi|222862791|gb|EEF00298.1| predicted protein [Populus trichocarpa]
          Length = 316

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KL+QI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLIQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     + +   +VAID+  M  I GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKLSPDSRDNDLPLIVAIDLQPMALIEGVIQVQGDITNARTAEVVIRHFDGSKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F + + +
Sbjct: 185 PVVTFAKPKSSRNSSIEAFAVCENY 209


>gi|296080816|ref|NP_001171683.1| FtsJ homolog 2 [Sus scrofa]
 gi|197281890|gb|ACH57152.1| FtsJ-like protein 2 [Sus scrofa]
          Length = 245

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 9/233 (3%)

Query: 3   KPPGSSSR--RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           KP  +S R  R  T     +    +   WL RH+ DP+V+ +++E +R RSA+KLL++NE
Sbjct: 6   KPAWASLRLQRFHTAGRCRKGRTAAEHLWLARHLKDPFVKASKVESYRCRSAFKLLEMNE 65

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAIDILDMEPILGVKFF 115
           +H+IL+   R++D G++PG+WSQVA +   +   +       V+ +D+L + P+ G  F 
Sbjct: 66  RHRILRPGLRVLDCGAAPGAWSQVAVQRVNAAGTDATAPVGFVLGVDLLHILPLEGATFL 125

Query: 116 K-FDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
              D  D  +++ IR  + GG  D++LSDMA    G R +DH R +SLC +    A ++L
Sbjct: 126 CPADVTDPRTFQRIRDLLPGGKADVILSDMAPNATGIRGLDHDRLISLCLSLLDMAPDVL 185

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  G FL K + G  ++ +   L + FQ    VKP ASR ES E++LLA  ++
Sbjct: 186 HPRGAFLCKIWAGSQSHRLQKRLTEAFQNTRTVKPAASRKESSELYLLATRYQ 238


>gi|15616987|ref|NP_240200.1| cell division protein FtsJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387078|sp|P57463|RLME_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|25311069|pir||F84974 cell division protein ftsJ [imported] - Buchnera sp. (strain APS)
 gi|10039052|dbj|BAB13086.1| cell division protein ftsJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|311087278|gb|ADP67358.1| cell division protein FtsJ [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 206

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 112/205 (54%), Gaps = 4/205 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  +  S  WL  H  D YV+ A+    R+R+ +KL Q+++ ++I +    ++DLG++PG
Sbjct: 4   QKKKHRSNRWLLEHFQDQYVKAAKKNNIRSRAWFKLEQLDKNNKIFKIGMNVIDLGAAPG 63

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDL 138
           SWSQ A+   G      R++A DIL + PI GV  F+ DF +  +    +         L
Sbjct: 64  SWSQYASNRIGKKG---RIIACDILPIRPITGVDIFQGDFRNKKTLNLMLNTFSNITFHL 120

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G+  ID  R + LC+ A   +  +L+  G FL+K+FQG   N++   +K 
Sbjct: 121 VMSDMAPNITGNFSIDMPRIIELCKLALKISEHVLSKNGIFLLKSFQGEGFNELYKEIKM 180

Query: 199 HFQKVIHVKPVASRAESVEMFLLAK 223
            F+K+   KP  SR  S E+F+LA 
Sbjct: 181 LFKKIKICKPKTSRTRSREIFILAT 205


>gi|76154918|gb|AAX26315.2| SJCHGC03585 protein [Schistosoma japonicum]
          Length = 218

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 12/207 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL         R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 86  ARITGS-----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           ++         +  + ++VA+D+  M PI GV   + D    D+ + I +   G    LV
Sbjct: 65  SKRLWESKSPDDRKSVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFSGKLAQLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D A    G   +D      L  AA      +L +GG F+ K F+G  +  +   L+  
Sbjct: 125 VCDGAPDVTGLHDLDEYVQSHLILAALTICSRVLELGGTFVAKVFRGRDSGLLGSQLRCL 184

Query: 200 FQ-KVIHVKPVASRAESVEMFLLAKGF 225
           F  +V   KP ASR  S+E F++ +GF
Sbjct: 185 FSGQVSFAKPKASRNSSLESFVVCRGF 211


>gi|254582987|ref|XP_002499225.1| ZYRO0E06952p [Zygosaccharomyces rouxii]
 gi|238942799|emb|CAR30970.1| ZYRO0E06952p [Zygosaccharomyces rouxii]
          Length = 291

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 5/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARI 88
           ++   D Y ++A+ +G+RARSA+KLLQ+NE+   L   + +R+VDL ++PGSWSQV +R 
Sbjct: 5   SKDKRDLYYRKAKEQGYRARSAFKLLQLNEEFHFLDDPNLKRVVDLCAAPGSWSQVLSRK 64

Query: 89  --TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAY 145
                +  + ++VA+D+  M PI  V   + D     +   I +  G +  D V SD A 
Sbjct: 65  LFDKDDYTDRQIVAVDLQAMMPIDHVTTLQADITHPRTLHQILELFGNHRADFVCSDGAP 124

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  +A    + +L  GG F+ K F+G   + I   L   F +V  
Sbjct: 125 DVTGLHDLDEYVQQQLIMSALQLTVCILKRGGTFVAKIFRGRDIDLIYAQLGYLFDQVTC 184

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ +G+
Sbjct: 185 AKPRSSRGSSLEAFVVCQGY 204


>gi|307183163|gb|EFN70073.1| Putative ribosomal RNA methyltransferase 1 [Camponotus floridanus]
          Length = 381

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLLQI+ +  I     + VDL ++PGSWSQV AR   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDTECHIFDGVSKAVDLCAAPGSWSQVLARKLN 64

Query: 91  SNAN---------NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
            N             ++VA+D+  M P+ GV   + D  + ++ + I         DLV+
Sbjct: 65  ENYKKALETGNASPPKIVAVDLQAMAPLEGVIQLQGDITNTNTAQQIIAHFDNTQADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L  GG F+ K F+    + +   L+  F
Sbjct: 125 CDGAPDVTGLHDMDIFIQSQLLLAALNITTHILRPGGTFVAKIFRAKDVSFLYAQLRIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP +SR  S+E F++ K +
Sbjct: 185 PYVYCTKPSSSRNSSIEAFVVCKDY 209


>gi|190348381|gb|EDK40824.2| hypothetical protein PGUG_04922 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 256

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
            G+S    L  +++++S   SS  WL R  +DP+ + A+ + +R+R+AYKL++++ K  +
Sbjct: 33  SGTSKHCQLNVQIRSKS-SVSSERWLRRQKDDPHTKEAKKQHYRSRAAYKLIELDHKFSL 91

Query: 65  LQSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            + N  RIVDLG +PG+W+QVA +         +++ +DI+   P  G +F   D     
Sbjct: 92  FKRNTLRIVDLGFAPGAWTQVAMQRMAQLGQKPKILGVDIIPSTPPEGAQFLHGDIFSRK 151

Query: 124 SWEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + IR        DLV+SDM   T G +  DHL +M LCE A   A   L   G  ++K
Sbjct: 152 THQEIRDNFPNNEVDLVMSDMMANTSGIKDNDHLASMELCEGALMLAASTLKTNGALVMK 211

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            + G     +    +K F+KV  +KP A R ES EM+ +  G
Sbjct: 212 FYTGREERQLEEKCRKMFKKVHRMKPSACRPESREMYFVCLG 253


>gi|262094401|gb|ACY09330.1| cell division protein [Heliconius melpomene melpomene]
          Length = 253

 Score =  224 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA---RITGSNANN 95
            + A+ EGWRARSA+KLLQINE++ I +   R VDL ++PGSWSQV     R   SN ++
Sbjct: 1   YRLAKEEGWRARSAFKLLQINEEYNIFEGVLRAVDLCAAPGSWSQVLTKKLRQNTSNTDD 60

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            ++VA+D+  M  + GVK  + D   + +  E I++  G   DLV+ D A    G   ID
Sbjct: 61  VKIVAVDLQAMAALPGVKQIQGDITKISTAHEIIKEFEGLKADLVVCDGAPDVTGLHDID 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA       L  GG F+ K F+G     +   LK  F  V   KP +SR  
Sbjct: 121 EYVQSQLLLAALNITTHXLKEGGVFVAKIFRGKDVTLLYSQLKLFFDYVTVSKPRSSRNS 180

Query: 215 SVEMFLLAKGF 225
           S+E F++ + +
Sbjct: 181 SIEAFVICQNY 191


>gi|317142990|ref|XP_001819235.2| ribosomal RNA large subunit methyltransferase J [Aspergillus oryzae
           RIB40]
          Length = 283

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 125/265 (47%), Gaps = 47/265 (17%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S S+R L           SS+ W  R + D + + A  +G ++R+A+KL+QI+ K++I +
Sbjct: 11  SRSQRALAFSPFTPKRPSSSKRWQARQLKDHFTREATAQGLKSRAAFKLIQIDAKYRIFR 70

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           + + +VDLG +PGSWSQVA   TG N    RV+ +DI+  +P  GV   + +FLD     
Sbjct: 71  NGQTVVDLGYAPGSWSQVAVSRTGPNG---RVLGVDIIPAQPPKGVFTIQGNFLDPSIQA 127

Query: 127 FIRQAIGGN--------------------------------------------PDLVLSD 142
           +++  +                                                D+VLSD
Sbjct: 128 YVQNFLHNPTRDQQHRPGISPHVSLSHETSEDTKNPIHNCKEMEELCLTGKRTVDVVLSD 187

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           M   T G    DH  +M LC AA  F+ E+L  GG F+ K +QG    D+   LK+ FQK
Sbjct: 188 MMMNTSGMSFRDHAGSMDLCRAALQFSFEVLKAGGHFVCKFYQGAEDKDLEKQLKRLFQK 247

Query: 203 VIHVKPVASRAESVEMFLLAKGFRK 227
           V  +KP +SR ES E + +    ++
Sbjct: 248 VHRLKPESSRNESKEAYFIGLARKQ 272


>gi|260809478|ref|XP_002599532.1| hypothetical protein BRAFLDRAFT_279878 [Branchiostoma floridae]
 gi|229284812|gb|EEN55544.1| hypothetical protein BRAFLDRAFT_279878 [Branchiostoma floridae]
          Length = 321

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           H  D + + A+  G+RARSA+KL+Q+N K+  LQ ++ +VDL ++PG W QVAA+     
Sbjct: 10  HRKDKFYKLAKETGYRARSAFKLIQLNRKYGFLQRSKVLVDLCAAPGGWLQVAAKYM--- 66

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHR 151
             ++ +V ID++ ++PI  V   + D       + +R+ +     D VL D A     + 
Sbjct: 67  PVSSLLVGIDLVPIKPIPNVSTIQADITTDKCRQALRKELATWQADCVLHDGAPNVGSNW 126

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D      L  AA   A E+L+ GG F+ K F+    + +L + ++ F+ V   KP AS
Sbjct: 127 LKDASEQAQLVLAALRLATEVLSKGGCFVTKVFRSKDYHALLWVFQQLFKLVHATKPQAS 186

Query: 212 RAESVEMFLLAKGF 225
           R ES E+F++ +GF
Sbjct: 187 RHESAEIFVVCEGF 200


>gi|327400140|ref|YP_004340979.1| Ribosomal RNA large subunit methyltransferase E [Archaeoglobus
           veneficus SNP6]
 gi|327315648|gb|AEA46264.1| Ribosomal RNA large subunit methyltransferase E [Archaeoglobus
           veneficus SNP6]
          Length = 209

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y   A+ +G+R+R+A+KLLQ+N+  ++++   +++DLG+SPG WSQVA  +     
Sbjct: 10  RQDYYYWEAKKKGYRSRAAFKLLQMNKTFKLIKKGSKVLDLGASPGGWSQVAVELGAE-- 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               VVA+DI  M PI GV F + D    ++ E I +A+    D V+ D +    GH  I
Sbjct: 68  ----VVAVDINPMPPIEGVTFIQGDITKEETLEKI-KAVSREYDAVICDASPKITGHWSI 122

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DHL +M L  AA   A ++L  GG+F+VK FQG     +    K +F+      P ASR 
Sbjct: 123 DHLISMDLARAAFNIARQVLKPGGNFVVKMFQGEEIQKVFNEFKPYFRFKKLHSPPASRK 182

Query: 214 ESVEMFLLAKGFRK 227
            S E++ + K F+K
Sbjct: 183 RSAEIYFIGKRFKK 196


>gi|239613095|gb|EEQ90082.1| AdoMet-dependent rRNA methyltransferase spb1 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECMPS---QSLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNNVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCQGFK 201


>gi|195438774|ref|XP_002067307.1| GK16249 [Drosophila willistoni]
 gi|194163392|gb|EDW78293.1| GK16249 [Drosophila willistoni]
          Length = 306

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KL+ I++  +I    +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDVYYRLAKEEGWRARSAFKLMHIDDAFKIFSGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVL 140
               T     N +++A+D+  M PI GV   + D     + E I +  G        LV+
Sbjct: 65  DTCETDEEKANVKIIAVDLQAMAPIRGVIQLQGDITKESTAEAIIEHFGEGVEQKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  +A   A  +L  GG F+ K F+G  T  +   ++  F
Sbjct: 125 CDGAPDVTGVHEMDEYMQHQLLVSALSIATFVLEPGGSFVAKIFKGNDTTLLDSQMRTFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           +   + KP++SR  S+E F++ + F
Sbjct: 185 KHFEYYKPLSSRPSSIEHFVVCRDF 209


>gi|307202661|gb|EFN81981.1| Putative ribosomal RNA methyltransferase CG11447 [Harpegnathos
           saltator]
          Length = 246

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 120/213 (56%), Gaps = 6/213 (2%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  + SS+ WL R + DPYV++A+ E +R RSA+KLL+I E+  I +  + +VD G++PG
Sbjct: 29  KHKKHSSQQWLVRQLRDPYVEKAKQERYRCRSAFKLLEIQERFNIFKPGQVVVDCGAAPG 88

Query: 80  SWSQVAARIT----GSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI-G 133
           SW++VA          + +  +V A+D L   P+ G       DF    + E +R+ +  
Sbjct: 89  SWTEVAVNAINASGKKDGSVGKVFAVDKLPFYPVEGAVVLSGMDFTSASTQEELRKTMQD 148

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D+VLSDMA    G R+IDH   + L  +A  FAL+M    G F+VK + G  T  + 
Sbjct: 149 DKADVVLSDMAPNASGVREIDHDNIIMLAYSAMKFALQMNKPDGTFVVKIWDGRKTQQLE 208

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + + + +V  V+P A+R ES EMF LA+ F+
Sbjct: 209 QDMLRFYNRVRIVRPNATRDESTEMFFLARDFK 241


>gi|148826967|ref|YP_001291720.1| cell division protein [Haemophilus influenzae PittGG]
 gi|148718209|gb|ABQ99336.1| cell division protein [Haemophilus influenzae PittGG]
          Length = 195

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
            +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG++PG WSQ      G   
Sbjct: 4   FSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGAAPGGWSQYVVSQIGGKG 63

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
              RV+A DIL+M PI+GV F + DF D +    +   +G    D+V+SDMA    G   
Sbjct: 64  ---RVIACDILEMAPIVGVDFLQGDFRDENVLNALLARVGEDKVDVVMSDMAPNFSGMPS 120

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R M L E A     ++L   G F+VK FQG   ++ L  ++  F  V   KP ASR
Sbjct: 121 VDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGEGFDEYLREIRSLFNVVKVRKPEASR 180

Query: 213 AESVEMFLLAKGFR 226
             S E++++A G++
Sbjct: 181 GRSREVYIVATGYK 194


>gi|50289623|ref|XP_447243.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526552|emb|CAG60176.1| unnamed protein product [Candida glabrata]
          Length = 309

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 11/206 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARI 88
           ++   D Y ++A+ EG+RARSAYKLLQ+NE+   L     +R+VDL ++PGSWSQV +R 
Sbjct: 5   SKDKRDLYYRKAKEEGYRARSAYKLLQLNEEFHFLDDPELKRVVDLCAAPGSWSQVLSRK 64

Query: 89  TGSNANNT--------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLV 139
             +             +++A+D+  M PI  V   + D     + E I +  G    D V
Sbjct: 65  LFAEREPVADGQEDDRKIIAVDLQPMSPIDHVITLQADITHPRTLERIYELFGNQKADFV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
            SD A    G   +D      L  +A      +L  GG F+ K F+G   + +   L   
Sbjct: 125 CSDGAPDVTGLHDLDEYIQHQLIMSALQLTTCVLKRGGTFVAKIFRGRDIDMLYSQLGYL 184

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+K++  KP +SR  S+E F++  G+
Sbjct: 185 FEKIVCAKPRSSRGTSLEAFIVCIGY 210


>gi|149192156|ref|ZP_01870376.1| 23S rRNA methyltransferase J [Vibrio shilonii AK1]
 gi|148833996|gb|EDL51013.1| 23S rRNA methyltransferase J [Vibrio shilonii AK1]
          Length = 192

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 108/195 (55%), Gaps = 4/195 (2%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARRKGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G   +  +V+A D+L M+PI GV F + DF +      + + I  + 
Sbjct: 61  APGGWSQYAAKVLG---DEGQVIACDLLPMDPISGVSFLQGDFREEAVLNALLERIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     + L  GG F+VK FQG   ++ +  
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCHQTLAPGGSFVVKVFQGEGFDEYVKQ 177

Query: 196 LKKHFQKVIHVKPVA 210
           ++  F+ V   KP +
Sbjct: 178 VRDAFKVVKIRKPDS 192


>gi|238882966|gb|EEQ46604.1| AdoMet-dependent rRNA methyltransferase SPB1 [Candida albicans
           WO-1]
          Length = 737

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 8/202 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVA 85
             +H     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA
Sbjct: 7   QKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVA 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMA 144
           +++   N   + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A
Sbjct: 67  SQLCPIN---SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA 123

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
                    D      L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV 
Sbjct: 124 PNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVE 183

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E+F++ KGF+
Sbjct: 184 ATKPPASRNVSAEIFVVCKGFK 205


>gi|224286965|gb|ACN41184.1| unknown [Picea sitchensis]
          Length = 309

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVL 140
                     +     +VAID+  M  I GV   + D     + E  I+   G   DLV+
Sbjct: 65  LPAKAAAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C LK  F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
             V   KP + R  S+E F + + +
Sbjct: 185 STVTFAKPKSGRNSSIEAFAVCENY 209


>gi|195060807|ref|XP_001995863.1| GH14141 [Drosophila grimshawi]
 gi|193891655|gb|EDV90521.1| GH14141 [Drosophila grimshawi]
          Length = 311

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 10/206 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLL I+E+  I    +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDVYYRQAKEEGWRARSAFKLLHIHEQFSIFDGVQRAVDLCAAPGSWSQVLSRKLF 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVL 140
               T       +++A+D+  M PI GV   + D     + E I    G        LV+
Sbjct: 65  EPCQTDDEKLAVKIIAVDLQAMAPIPGVLQIQGDITQESTAEAIIAHFGSGDDQKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  +A   A  +L  GG F+ K F     + +   ++  F
Sbjct: 125 CDGAPDVTGFHEMDEYMQNQLIVSALSLATCVLEPGGKFVAKIFNVTENDLLETQMRTFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           +     KP +SR  S E F++   FR
Sbjct: 185 KHFHIYKPPSSRPSSYEAFVVCSDFR 210


>gi|84997481|ref|XP_953462.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304458|emb|CAI76837.1| hypothetical protein, conserved [Theileria annulata]
          Length = 920

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 11/211 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +K +S  G +R        D Y   A+  G+R+RSA+K++Q+++K  I Q+   +VDL +
Sbjct: 1   MKTKSKTGKNRL-------DKYYHLAKEHGYRSRSAFKIIQLSKKFNIFQNCNVLVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG W QVA+     ++    ++ +D++ ++PI GV  F+ D         I   + G N
Sbjct: 54  APGGWLQVASNQLPVSST---IIGVDLVPIKPIKGVTTFQADIRTPKCLSLITNHLNGMN 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL D +     +  +D      L   A   A  +L  GG F+ K F+    N ++ +
Sbjct: 111 VDVVLHDGSPNMGCNWNLDAFNQNVLVLTACKMACSLLRKGGIFVTKVFRSSDYNSLVWM 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F KV   KP +SR  S E+F +  GF+
Sbjct: 171 LSNCFDKVKVTKPQSSRNVSAEIFAVCIGFK 201


>gi|152979916|ref|YP_001353928.1| 23S rRNA methylase [Janthinobacterium sp. Marseille]
 gi|189040693|sp|A6T081|RLME_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|151279993|gb|ABR88403.1| 23S rRNA methylase [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 117/205 (57%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +++WL+ HINDPYV+ AQ EG+RAR+ YKL +I+E  ++++  + IVDLG++PGSWSQ  
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDETEKLIKPGQIIVDLGATPGSWSQYV 66

Query: 86  ARITGSN---ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLS 141
                 +     N  ++ +D+L MEPI  V F + DF + +  E + Q + G   DLV+S
Sbjct: 67  RNKLSGSVGGGINGTIIGLDMLPMEPIADVHFIQGDFREQEVLEQLEQVLQGRKVDLVIS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R + L + A  F    +   G  LVK F G   + I+   +  F+
Sbjct: 127 DMAPNLSGIAVADAARMIDLIDLAIDFTQHHMKPSGSLLVKCFNGSGYSYIVEKFRDEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V+  KP ASR +S E+FLL K  +
Sbjct: 187 TVVQKKPKASRDKSSEIFLLGKTLK 211


>gi|294925458|ref|XP_002778927.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239887773|gb|EER10722.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 418

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+ +G+RARSA+KL+Q+ +K+  L++ R  VDL  +PG WSQVA +   +N   
Sbjct: 13  DRFYQLAKEQGYRARSAFKLIQLEKKYGFLKNARSCVDLCGAPGGWSQVAVKHMPAN--- 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTIGHRKID 154
           ++V+ +D++ ++PI GV   + D       +F+ + + G P  +VL+D A         D
Sbjct: 70  SKVICVDLMPIKPIKGVVTMQCDITTQKCRQFLLKELNGTPCDVVLNDGAPNVGASWAKD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 LC  A   A +ML  GG F+ K F+    N +L + ++ F+KV   KP ASR  
Sbjct: 130 AYNQAELCLYAVHLAADMLRKGGTFVTKVFRSSDYNSLLWVFQQLFEKVEATKPTASRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+F+  KGF+
Sbjct: 190 SAEIFVTCKGFK 201


>gi|10120640|pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine
 gi|10120641|pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
           Adenosylmethionine, Mercury Derivative
          Length = 180

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           G R+R+ +KL +I +  ++ +    +VDLG++PG WSQ      G      R++A D+L 
Sbjct: 1   GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKG---RIIACDLLP 57

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M+PI+GV F + DF D    + + + +G     +V+SDMA    G   +D  R M L E 
Sbjct: 58  MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVEL 117

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A     ++L  GG F+VK FQG   ++ L  ++  F KV   KP +SRA S E++++A G
Sbjct: 118 ALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177

Query: 225 FR 226
            +
Sbjct: 178 RK 179


>gi|239790974|dbj|BAH72013.1| ACYPI009233 [Acyrthosiphon pisum]
          Length = 307

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 5/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y + A+ +GWRARSA+KL+QIN + ++L   +R+VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEQGWRARSAFKLIQINSQFKVLDGVKRVVDLCAAPGSWSQVLSKALY 64

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAY 145
               + ++ ++VA+D+  M P+ GV   K D     +   I     G    DLV+ D A 
Sbjct: 65  SDSDDKDDVKIVAVDLQSMAPLPGVVQLKGDITKESTANEILAQFDGGRLVDLVVFDGAP 124

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L  GG F+ K F+G  ++ ++  L+  F  V+ 
Sbjct: 125 DVTGLHDLDEYVQAQLLLAALNITTYLLKPGGTFIGKIFRGKDSSLLISQLEIFFGDVVV 184

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S+E F++ + FR
Sbjct: 185 AKPCSSRNSSIESFVVCRDFR 205


>gi|224070396|ref|XP_002195665.1| PREDICTED: FtsJ homolog 2 (E. coli) [Taeniopygia guttata]
          Length = 234

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
             S+  R L   VK     G+ + WL RH+ DP+V+ ++ + +R RSA+KLL+I++K ++
Sbjct: 4   AASAGGRYLHTTVKFLRKTGAEQRWLERHLKDPFVKASKQQHYRCRSAFKLLEIDDKLRV 63

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFD 118
           L+    ++D G++PG+WSQVA +   +           V+ +D+L + P+ G  F  + D
Sbjct: 64  LRPGFSVLDCGAAPGAWSQVAVQRVNALGTDAAVPTGFVLGVDLLRISPLEGAVFLSETD 123

Query: 119 FLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             +  +   I+  +  G  D++LSDMA    G +++DH + +SLC      +  +L   G
Sbjct: 124 MAEPSTLRAIQSLLPLGKADVILSDMAPNATGIKELDHQKLISLCLGLLDMSQSILKPKG 183

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             L K + G     +   LK+ FQ V  +KP ASR +S E + LA+ +R
Sbjct: 184 TMLCKFWDGSEARLLQNRLKEQFQDVRTIKPQASRKDSAESYYLARLYR 232


>gi|290996969|ref|XP_002681054.1| predicted protein [Naegleria gruberi]
 gi|284094677|gb|EFC48310.1| predicted protein [Naegleria gruberi]
          Length = 239

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 11/214 (5%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPG 79
           +   SS  WL+R   D +V++A+ +G+R+R+A+KLL+I+EK  + L+ ++ I+DLG++PG
Sbjct: 28  TQTKSSGRWLDRQRRDTFVKQAKAQGYRSRAAFKLLEIDEKWGKFLEKSKVIIDLGAAPG 87

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILG-------VKFFKFDFLDLDSWEFIRQAI 132
           SWSQVAA    S     +++ IDILDMEP+         +   K  F D           
Sbjct: 88  SWSQVAAEKMKSGG---KLITIDILDMEPLKSPPNKNLQIIQLKGKFEDSIPQLRSYLNE 144

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   D +LSDMA  T G + +DH R + LC  +  FA E+L  GG  L+K F G     +
Sbjct: 145 GEFADCLLSDMAPNTSGVKSLDHNRIIFLCNTSIDFAFEVLKPGGCMLMKIFSGPEDATL 204

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              LK++F+ V  VKP +SR+ES E+++LA+GF+
Sbjct: 205 KNDLKQYFENVNFVKPASSRSESSEVYVLAEGFK 238


>gi|50550277|ref|XP_502611.1| YALI0D09251p [Yarrowia lipolytica]
 gi|73621944|sp|Q6C9Q1|SPB1_YARLI RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49648479|emb|CAG80799.1| YALI0D09251p [Yarrowia lipolytica]
          Length = 850

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 8/202 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVA 85
             +H     D Y + A+ +G+RARS++K++QIN+K+ + L+ ++ ++DL ++PGSW QVA
Sbjct: 5   QKKHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVA 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMA 144
           +++   N   + ++  DI+ ++P+  V  F+ D       + +RQ +     D V+ D A
Sbjct: 65  SQLCPVN---SLIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKADTVMHDGA 121

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
                    D      L   +   A+E LN GG F+ K F+    N+++ + ++ F+KV 
Sbjct: 122 PNVGMAWAQDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNLMWVFQQFFEKVE 181

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S E+F++   F+
Sbjct: 182 ATKPPSSRNVSAEIFVVCLKFK 203


>gi|225717054|gb|ACO14373.1| ribosomal RNA methyltransferase 2 [Esox lucius]
          Length = 242

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 121/215 (56%), Gaps = 7/215 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    + + W+ R +NDP+V+ A +  +R RSA+KLL+I++K+++L+    ++D G++PG
Sbjct: 26  KGKSTADQRWIVRQLNDPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFSVIDCGAAPG 85

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI- 132
           +WSQVA +   S           VV ID+  + P+ G  F    D  D  +   + + + 
Sbjct: 86  AWSQVAVQRVNSTGSYEEFPRGTVVGIDLQRIAPLDGAHFLSNCDITDPVTHAKLLKLLP 145

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG   ++LSDMA    G +++DH + +++  +    A ++L  GG  + K + G   + +
Sbjct: 146 GGQAHIILSDMAPNASGFKEMDHEKLITMSLSLMDLADKVLRPGGSLICKYWDGALASVL 205

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L   F++V  +KP ASR ES E+FLLA+ +R+
Sbjct: 206 QARLSAVFREVRTIKPKASRKESSELFLLARSYRE 240


>gi|134094399|ref|YP_001099474.1| ribosomal RNA large subunit methyltransferase J [Herminiimonas
           arsenicoxydans]
 gi|158513564|sp|A4G4B0|RLME_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|133738302|emb|CAL61347.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA
           methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 214

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 4/209 (1%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +  +++WL+ HINDPYV+ AQ EG+RAR+ YKL +I+E  ++++  + IVDLG +PGSW
Sbjct: 3   KKKLNKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDESEKLIKPGQIIVDLGCTPGSW 62

Query: 82  SQVAARITGSN---ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPD 137
           SQ        +     N  ++ +D+L+MEPI  V + + DF + +  E +   + G   D
Sbjct: 63  SQYVRNKLSGSVGGGINGIIIGLDMLEMEPIADVHYIQGDFREQNVLEQLEVVLAGRKVD 122

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LVLSDMA    G    D  R M + E A  FA   +   G  LVK F G   NDI+   +
Sbjct: 123 LVLSDMAPNLSGIAVADAARMMDIIELAIDFAQHHMKPSGSLLVKCFNGSGFNDIVEKFR 182

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP ASR +S E+FLL K  +
Sbjct: 183 HEFKTVTQKKPKASRDKSSEIFLLGKTLK 211


>gi|213402435|ref|XP_002171990.1| AdoMet-dependent rRNA methyltransferase spb1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000037|gb|EEB05697.1| AdoMet-dependent rRNA methyltransferase spb1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 795

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+R+R+A+KL+Q+N+K+  L+  R ++DL ++PG W QVA++        
Sbjct: 14  DKWYKLAKEQGYRSRAAFKLVQLNKKYNFLEKARVVIDLCAAPGGWLQVASKTCKPG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + +V +D+  ++PI     F  D         +R  +     D+V+ D A         D
Sbjct: 71  SLIVGVDLAPIKPIPNCITFVEDITSDRCRSQLRGYLKTWKADVVVHDGAPNVGAAWLQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   A   A E L  GG F+ K F+    N+++ + K+ F KV   KP +SR  
Sbjct: 131 AYGQAELVLMAMKLACEFLGPGGTFVTKVFRSKDYNNLIWVFKQLFNKVEATKPPSSRNV 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++ +G++
Sbjct: 191 SAEIFVVCRGYK 202


>gi|156084518|ref|XP_001609742.1| ribosomal RNA large subunit methyltransferase J protein [Babesia
           bovis T2Bo]
 gi|154796994|gb|EDO06174.1| ribosomal RNA large subunit methyltransferase J protein, putative
           [Babesia bovis]
          Length = 237

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 2/211 (0%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLG 75
           KV+N +    S +W+ R I D Y ++AQ++ +R+R+AYKL ++++++ + + N+ IV+LG
Sbjct: 5   KVRNPATTH-SAEWIRRQITDHYTKKAQVDQYRSRAAYKLQELDDRYLLFRKNQIIVELG 63

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GG 134
             PG W+QV    + + A+N++V+ ID L M+ I    F K D  D  +   +  A+ G 
Sbjct: 64  CYPGGWAQVCLERSLTGASNSKVIGIDRLHMDHIANYDFIKGDINDQSTQAQLFSALQGA 123

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSD+A    G ++ DHL +  LC  A      ++ + G F+VK F GG  N+   
Sbjct: 124 KADLVLSDLAPSCTGIKQDDHLNSTELCMQAAALMERIIAVNGSFVVKIFMGGQLNNYRT 183

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            L+  F  V   KP ASR+ES EM+ + KGF
Sbjct: 184 YLQSQFNTVHSAKPQASRSESREMYFVCKGF 214


>gi|317032331|ref|XP_001394644.2| transfer RNA methyltransferase [Aspergillus niger CBS 513.88]
          Length = 396

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 31/226 (13%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPDKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNT--------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           +R+   + +          ++V+ID+  M P+ G+   K D     +   + +A+     
Sbjct: 65  SRVLIKDTDMAELKPRKNVKIVSIDLQPMAPLEGITTLKADITHPSTIPLLLRALDPEAY 124

Query: 137 -----------------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                            DLV+SD A    G   +D      L  +A   AL +L  GG F
Sbjct: 125 DSSTSSTPSAIRPPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYSALNLALGVLRPGGKF 184

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           + K F+G   + +   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 185 VAKIFRGRDVDLLYAQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 230


>gi|157128998|ref|XP_001655238.1| cell division protein ftsj [Aedes aegypti]
 gi|108872397|gb|EAT36622.1| cell division protein ftsj [Aedes aegypti]
          Length = 239

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 7/213 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS+ WL+R +NDPYV++A++  +R RSA+KLL+I++K+ I++    ++D G+SPG
Sbjct: 22  KGKSKSSQQWLSRQLNDPYVEKAKMLNYRCRSAFKLLEIDQKYNIIKPGHTVIDCGASPG 81

Query: 80  SWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIG 133
           SWSQ+A + +             V+ +D+L + PI         DF+  +S + IR  +G
Sbjct: 82  SWSQIAVQQSNASGSQPGKPRGMVIGVDLLQIYPIEHATMLGNTDFMKQESQDKIRALLG 141

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               D VLSDMA    G R +D    ++LC +   FA+ M +     LVK +  G    +
Sbjct: 142 ERRVDCVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLVKVWDNGEVPLL 201

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              ++K++Q+V  +KP ASR++S E F+LA+GF
Sbjct: 202 EKNMQKYYQQVKRIKPRASRSDSAENFILARGF 234


>gi|307208282|gb|EFN85714.1| Putative ribosomal RNA methyltransferase 1 [Harpegnathos saltator]
          Length = 361

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 11/206 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y +RA+ EGWRARSA+KLLQI+++ +I     + +DL ++PGSWSQV A    
Sbjct: 5   SKDKRDIYYRRAKEEGWRARSAFKLLQIDQECRIFNGVSKTIDLCAAPGSWSQVLALKLN 64

Query: 91  SNAN----------NTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLV 139
            N              ++VA+D+  M P+ GV   + D  + ++  E I        DLV
Sbjct: 65  ENYKKALEESSAASPPKIVAVDLQAMAPLEGVIQLQGDITNTNTAKEIIAHFDNTQADLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           + D A    G   +D      L  AA      +L  GG F+ K F+      +   L+  
Sbjct: 125 VCDGAPDVTGLHDMDIFIQSQLLLAALNITTHILRPGGTFVAKIFRAKDVTFLYAQLRIF 184

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F  V   KP +SR  S+E F++ K +
Sbjct: 185 FSYVYCAKPSSSRNSSIEAFVVCKNY 210


>gi|6319535|ref|NP_009617.1| Trm7p [Saccharomyces cerevisiae S288c]
 gi|586500|sp|P38238|TRM7_YEAST RecName: Full=tRNA (uridine-2'-O-)-methyltransferase TRM7
 gi|536303|emb|CAA85004.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|151946453|gb|EDN64675.1| 2'-O-ribose tRNA anticodon loop methyltransferase [Saccharomyces
           cerevisiae YJM789]
 gi|190408775|gb|EDV12040.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Saccharomyces
           cerevisiae RM11-1a]
 gi|207347732|gb|EDZ73814.1| YBR061Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271915|gb|EEU06940.1| Trm7p [Saccharomyces cerevisiae JAY291]
 gi|285810396|tpg|DAA07181.1| TPA: Trm7p [Saccharomyces cerevisiae S288c]
 gi|290878080|emb|CBK39139.1| Trm7p [Saccharomyces cerevisiae EC1118]
 gi|323310224|gb|EGA63416.1| Trm7p [Saccharomyces cerevisiae FostersO]
 gi|323334541|gb|EGA75915.1| Trm7p [Saccharomyces cerevisiae AWRI796]
 gi|323338635|gb|EGA79851.1| Trm7p [Saccharomyces cerevisiae Vin13]
 gi|323349695|gb|EGA83910.1| Trm7p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323356040|gb|EGA87845.1| Trm7p [Saccharomyces cerevisiae VL3]
          Length = 310

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARI 88
           ++   D Y ++A+ +G+RARSA+KLLQ+N++   L   + +R+VDL ++PGSWSQV +R 
Sbjct: 5   SKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQVLSRK 64

Query: 89  -----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSD 142
                  S+  + ++V++D+  M PI  V   + D     +   I +  G    D V SD
Sbjct: 65  LFDESPSSDKEDRKIVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNEKADFVCSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      L  +A      +L  GG F+ K F+G   + +   L   F K
Sbjct: 125 GAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGYLFDK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           ++  KP +SR  S+E F++  G+
Sbjct: 185 IVCAKPRSSRGTSLEAFIVCLGY 207


>gi|320582207|gb|EFW96425.1| rRNA methyltransferase, putative [Pichia angusta DL-1]
          Length = 824

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 5/193 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           D Y   A+ +G+RARS++K+LQIN+K+   L+ ++ ++DL ++PGSW QVAA++   N  
Sbjct: 14  DRYYHLAKEKGYRARSSFKILQINQKYGHFLEKSKVVIDLCAAPGSWCQVAAQLCPVN-- 71

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKI 153
            + +V +DI+ ++PI     F+ D    D    +R  +     D VL D A     +   
Sbjct: 72  -SLIVGVDIVPIKPIPNCITFQSDITTEDCKSKLRGHLKTWKADTVLHDGAPNVGLNWVQ 130

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   A   A+E L  GG F+ K F+    N+++ + ++ F KV   KP ASR 
Sbjct: 131 DAYTQSHLTLQALRLAVEHLAAGGTFVTKVFRSRDYNNLVWVFRQLFDKVEATKPPASRN 190

Query: 214 ESVEMFLLAKGFR 226
            S E+F++ KGF+
Sbjct: 191 VSAEIFVVCKGFK 203


>gi|294495192|ref|YP_003541685.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanohalophilus mahii
           DSM 5219]
 gi|292666191|gb|ADE36040.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanohalophilus mahii
           DSM 5219]
          Length = 264

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 116/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + RH  D Y  RA+ EG+R+R+AYKL QIN+K  +++ +  +VDLG++PG W +VA  +T
Sbjct: 1   MARHRRDTYYWRAKAEGYRSRAAYKLQQINKKFNVIREDSDVVDLGAAPGGWLEVARELT 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
                  +VV +DIL ++P+  +   + D    ++   I++A+G +  D V+ D A    
Sbjct: 61  KR-----KVVGVDILRIKPMDRITIIRGDITREETVSQIKEAVGEDGADAVICDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +DH R+++L E+A   A  +L   G+F+VK FQG    + L  ++  F  V    P
Sbjct: 116 GNWNLDHARSIALAESALECATRILKPQGNFVVKVFQGDMFKEYLDKVRGEFTYVRAHSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR+ES E++++ K F
Sbjct: 176 EASRSESAEIYVVGKKF 192


>gi|88812982|ref|ZP_01128225.1| 23S rRNA Um2552 2'-O-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88789760|gb|EAR20884.1| 23S rRNA Um2552 2'-O-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 190

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/186 (40%), Positives = 111/186 (59%), Gaps = 4/186 (2%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           + A  +G+R+R+ YKLL+I+++ ++L     ++DLG++PGSWSQ      G+     RV+
Sbjct: 2   RAAHKQGYRSRAVYKLLEIDQRDRLLHRGMTVIDLGAAPGSWSQYCVERLGATG---RVI 58

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           A+DIL M+P+ GV+  + DF D  +  E I +  G    LVLSDMA    G   ID  R 
Sbjct: 59  ALDILPMQPLPGVEVLQADFRDAKTLTELINRVEGRPVHLVLSDMAPNISGVTAIDQPRA 118

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           M L E A   A ++L   G FL+K FQG   +D L  L++ F+KV+  KP ASR  S E+
Sbjct: 119 MRLAEEALELACQVLVGNGSFLIKGFQGEGFDDYLQRLRECFRKVVIRKPKASRERSREV 178

Query: 219 FLLAKG 224
           +LLA+ 
Sbjct: 179 YLLARH 184


>gi|224011377|ref|XP_002295463.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583494|gb|ACI64180.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 221

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 24/218 (11%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           L+R   D + ++A+  G+RARSA+KL+QI+ +  +L    R VDL ++PG WSQV     
Sbjct: 4   LSRDKRDVFYRKAKETGYRARSAFKLIQIDNEFDLL--VHRAVDLCAAPGGWSQVLVERI 61

Query: 90  ---------------------GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
                                G N     +VA+D+  MEP+ GV   + D   L++ + I
Sbjct: 62  VPQDAVAKTEASTKDKLNGASGENIGTPAIVAVDLWPMEPLPGVHCIQGDITSLETAQKI 121

Query: 129 RQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
            Q   G   +LV+ D A         D      L  +A   +  +L+  G F+ K F+G 
Sbjct: 122 IQHFHGRRAELVVCDGAPDVTNLHSFDSYTQSQLLLSAINISTHVLSPNGIFVAKIFRGR 181

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               I   L+  F+ V+  KP ASR  S+E F++ +GF
Sbjct: 182 DVGLIYTQLQLLFENVVCAKPTASRNASIESFVVCRGF 219


>gi|298674755|ref|YP_003726505.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanohalobium
           evestigatum Z-7303]
 gi|298287743|gb|ADI73709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanohalobium
           evestigatum Z-7303]
          Length = 255

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 6/192 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D + + A+ EG+R+R+AYKLLQIN +  +++ N  IVDLG++PG W QVA +I+ +   
Sbjct: 5   KDSFYRLAKDEGYRSRAAYKLLQINNRFNVIEKNDTIVDLGAAPGGWLQVARKISNN--- 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKI 153
             +VV ID+  ++ I GV+  K D     +   I + I     D+V+SD A    G+  +
Sbjct: 62  --KVVGIDLQRIKSIEGVETVKGDMTSDRTVRKILKTIEDEGVDVVISDAAPNLSGNWNL 119

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L E+A  FA ++L   G+F+VK FQG   ND L  +K +F  V   +P ASR+
Sbjct: 120 DHARSIDLVESALEFAKQVLKPSGNFVVKVFQGDMFNDFLEKVKNNFAYVKAHEPKASRS 179

Query: 214 ESVEMFLLAKGF 225
           +S E++++   F
Sbjct: 180 QSAEIYVIGMDF 191


>gi|261191079|ref|XP_002621948.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239590992|gb|EEQ73573.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           dermatitidis SLH14081]
          Length = 829

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ +R ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSRVVIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECMPS---QSLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNNVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCQGFK 201


>gi|195157182|ref|XP_002019475.1| GL12202 [Drosophila persimilis]
 gi|194116066|gb|EDW38109.1| GL12202 [Drosophila persimilis]
          Length = 249

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 122/214 (57%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL+    ++D G++PG
Sbjct: 31  KGKSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYKILKPGDAVLDCGAAPG 90

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI- 132
           SW+QVA   T ++    R     V +ID+L    + G   +   DF    S + +R+A+ 
Sbjct: 91  SWTQVAVERTNAHGKIERAPVGAVFSIDLLHFHAVPGATIYGGMDFTTPLSQQRLREALA 150

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   + VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +
Sbjct: 151 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKVWDNGDVPKL 210

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + K ++KV  VKP ASR +S E FL+A+G++
Sbjct: 211 ERNMLKFYEKVKRVKPRASRGDSAEHFLVARGYK 244


>gi|121998550|ref|YP_001003337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhodospira halophila
           SL1]
 gi|143460291|sp|A1WXX3|RLME_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|121589955|gb|ABM62535.1| 23S rRNA Um-2552 2'-O-methyltransferase [Halorhodospira halophila
           SL1]
          Length = 212

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 88/212 (41%), Positives = 128/212 (60%), Gaps = 6/212 (2%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           T + + R C   +R   +RH +DP+V+RA+ EGWR+R+A KL  I+++  + +  + +VD
Sbjct: 3   TCRRRRRGCNSQARR--SRHESDPFVRRARAEGWRSRAALKLEAIDQRDGLFRPGQVVVD 60

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           LG++PG WSQ+ A   GS     RVVAID+L+M+P+ GV F   DF   +    + +A+ 
Sbjct: 61  LGAAPGGWSQLVAPKVGS---AGRVVAIDLLEMDPLPGVTFLHADFSTDEGLRAVERALE 117

Query: 134 GNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G P D+VLSDMA    GH  +D    M L E A  FA + L+  GDFLVK F G   +  
Sbjct: 118 GRPVDIVLSDMAPNLTGHNAVDQPAAMGLAELAADFAGQFLHKNGDFLVKVFHGEGFDAF 177

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
              L + F +V+  KP ASR+ S E++LLA+G
Sbjct: 178 RGDLTRRFSRVLSRKPDASRSGSREVYLLARG 209


>gi|149241908|ref|XP_001526378.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450501|gb|EDK44757.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 334

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 107/235 (45%), Gaps = 39/235 (16%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARIT 89
           N+   D Y +RA+ EGWRARSAYKLLQ++++  +L  + +R+VDL ++PGSWSQV ++  
Sbjct: 5   NKDKRDLYYRRAKEEGWRARSAYKLLQLDQEFNLLNSNVKRVVDLCAAPGSWSQVLSKRL 64

Query: 90  GS-------------------------------------NANNTRVVAIDILDMEPILGV 112
            S                                     NA+  ++VA+D+  M PI GV
Sbjct: 65  HSSTTATNNSSTATTPITPTTPTAPTAAAAATTTSSVNVNADAAKIVAVDLQPMTPIEGV 124

Query: 113 KFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
              + D     + + I         D V SD A    G   +D      L  AA      
Sbjct: 125 TTIQADITHPKTLQQILDCFDNELADFVCSDGAPDVTGLHDLDEYVQHQLVWAALQLTTC 184

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L  GG F  K F+G   + +     K F +V+  KP +SR  S+E F++  G+R
Sbjct: 185 ILKPGGSFAAKIFRGKDIDVMYKQFSKFFDRVVCAKPRSSRGTSLEAFIVGLGYR 239


>gi|327354853|gb|EGE83710.1| hypothetical protein BDDG_06655 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 829

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECMPS---QSLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNNVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCQGFK 201


>gi|303252225|ref|ZP_07338393.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649008|gb|EFL79196.1| 23S rRNA methyltransferase J [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 179

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 4/180 (2%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R+R+ +KL +I +  ++ +    +VDLG++PG WSQ A    GS     R++A DILDM 
Sbjct: 2   RSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQYAVTQIGSKG---RIIACDILDMN 58

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
           PI+GV F + DF +      + + +G +  D+V+SDMA    G   +D  R M L E A 
Sbjct: 59  PIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRAMYLVELAL 118

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               ++L   G F+VK FQG   +D L  ++  F  V   KP ASR  S E++++A G++
Sbjct: 119 DMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRAMFTTVKVRKPEASRDRSREVYIVATGYK 178


>gi|310792520|gb|EFQ28047.1| Spb1 domain-containing protein [Glomerella graminicola M1.001]
          Length = 852

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ +VDL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVVDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                 A    +V +D+  ++PI  V  F+ D         IR  +     D VL D A 
Sbjct: 64  ETCPVGA---LIVGVDLAPIKPIPKVITFQSDITTDKCRATIRSHLKTWKADCVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWNQDSFNQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ KG++
Sbjct: 181 TKPPSSRNVSAEIFVVCKGYK 201


>gi|225716246|gb|ACO13969.1| ribosomal RNA methyltransferase 2 [Esox lucius]
          Length = 242

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 121/215 (56%), Gaps = 7/215 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    + + W+ R +NDP+V+ A +  +R RSA+KLL+I++K+++L+    ++D G++PG
Sbjct: 26  KGKSTADQRWIVRQLNDPFVEAAHVHNYRCRSAFKLLEIDDKYKLLKPGFSVIDCGAAPG 85

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI- 132
           +WSQVA +   S           VV ID+  + P+ G  F    D  D  +   + + + 
Sbjct: 86  AWSQVAVQRVNSTGSYEEFPRGTVVGIDLQRIAPLDGAHFLSNCDITDPVTHAKLLKLLP 145

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           GG   ++LSDMA    G +++DH + +++  +    A ++L  GG  + K + G   + +
Sbjct: 146 GGQAHIILSDMAPNASGFKEMDHEKLITMSLSLMDLADKVLRPGGSLICKYWDGALASVL 205

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L   F++V  +KP ASR ES E+FLLA+ +R+
Sbjct: 206 QARLSAVFREVRTIKPKASRKESSELFLLARSYRE 240


>gi|331214017|ref|XP_003319690.1| 23S rRNA methylase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309298680|gb|EFP75271.1| 23S rRNA methylase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 299

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 9/204 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL----QSNRRIVDLGSSPGSWSQVAA 86
           ++   D Y +  + EG+RARSAYKL+ ++E + +     Q+  R++DL ++PGSWSQV  
Sbjct: 5   SKDKRDIYYRLGKSEGYRARSAYKLIHLDELYGLFNHPSQAVDRVIDLCAAPGSWSQVLV 64

Query: 87  RITGS----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLS 141
           +             ++VA+D+  M PI GV     D   L++    +    G   DLV+ 
Sbjct: 65  KKLNETRSAEEEPAKIVAVDLQPMAPIDGVVQIVGDITKLETATSILSHFEGQKADLVVC 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA    L +L  GG F+ K F+G   N I   L   F 
Sbjct: 125 DGAPDVTGLHDLDEFVQSQLLLAALNITLSVLKPGGTFVAKIFRGRDVNMIYDQLLNFFG 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           +V   KP +SR+ S+E F++ + +
Sbjct: 185 EVDCAKPRSSRSSSIEAFVVCRNY 208


>gi|323306102|gb|EGA59836.1| Trm7p [Saccharomyces cerevisiae FostersB]
          Length = 233

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARI 88
           ++   D Y ++A+ +G+RARSA+KLLQ+N++   L   + +R+VDL ++PGSWSQV +R 
Sbjct: 5   SKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQVLSRK 64

Query: 89  -----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSD 142
                  S+  + ++V++D+  M PI  V   + D     +   I +  G    D V SD
Sbjct: 65  LFDESPSSDKEDRKIVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNEKADFVCSD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      L  +A      +L  GG F+ K F+G   + +   L   F K
Sbjct: 125 GAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGYLFDK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           ++  KP +SR  S+E F++  G+
Sbjct: 185 IVCAKPRSSRGTSLEAFIVCLGY 207


>gi|295670405|ref|XP_002795750.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb01]
 gi|226284835|gb|EEH40401.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 825

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + +V +D+  ++PI  V  F+ D         IRQ       D VL D A 
Sbjct: 64  ECMPS---QSLIVGVDLAPIKPIPKVITFQSDITTDKCRATIRQHFKSWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGVAWVQDAFSQAELVLQSLKLATEFLTPGGTFVTKVFRSKDYNPLLWVFKQLFATVKA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCLGFK 201


>gi|322699763|gb|EFY91522.1| AdoMet-dependent rRNA methyltransferase spb1 [Metarhizium acridum
           CQMa 102]
          Length = 840

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
            +   N   + ++ +D+  ++PI  V  F+ D    +    IRQ +     D VL D A 
Sbjct: 64  EVMPVN---SLIIGVDLAPIKPIPKVITFQSDITTENCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +L + F KV  
Sbjct: 121 NVGTAWAQDSFNQAELALQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|294891100|ref|XP_002773420.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239878573|gb|EER05236.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 419

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q A+ +G+R RSA+KL+Q+ +K+  L++ R  VDL  +PG WSQVAA+   +N   
Sbjct: 13  DRFYQLAKEQGYRGRSAFKLIQLEKKYGFLKNARSCVDLCGAPGGWSQVAAKHMPAN--- 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTIGHRKID 154
           ++V+ +D++ ++PI GV   + D       +F+ + + G P  +VL+D A         D
Sbjct: 70  SKVICVDLMPIKPIKGVVTMQCDITTQKCRQFLLKELNGTPCDVVLNDGAPNVGASWAKD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 LC  A   A +ML  GG F+ K F+    N +L + ++ F+KV   KP ASR  
Sbjct: 130 AYNQAELCLYAVHLAADMLRKGGTFVTKVFRSSDYNSLLWVFQQLFEKVEATKPTASRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+F+  KGF+
Sbjct: 190 SAEIFVTCKGFK 201


>gi|15029842|gb|AAH11144.1| Ftsj1 protein [Mus musculus]
          Length = 308

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+  +L+S +R V + ++P  +  V  +  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFSLLESVKRAVAVCAAPFFFFFVRLQKAG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV-LSDMAYPTIG 149
            +  + +VVA+D+  M P  GV   + D   L + + I Q   G P L  + + A    G
Sbjct: 65  GHG-SGQVVAVDLQAMAPQPGVIQIQGDITQLSTAKEIIQHFEGCPALFAVCEGAPDVTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L  AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 LHDVDEYMQAQLLLAALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFPSVLCAKPK 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|50285125|ref|XP_444991.1| hypothetical protein [Candida glabrata CBS 138]
 gi|73621936|sp|Q6FX63|SPB1_CANGA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49524294|emb|CAG57891.1| unnamed protein product [Candida glabrata]
          Length = 837

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASKLCPVN---SLIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L + G F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|294657864|ref|XP_460162.2| DEHA2E19690p [Debaryomyces hansenii CBS767]
 gi|218511801|sp|Q6BNQ8|SPB1_DEBHA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|199433005|emb|CAG88435.2| DEHA2E19690p [Debaryomyces hansenii]
          Length = 831

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 113/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ ++ +     F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASQLCPIN---SLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E LN GG F+ K F+    N+++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ KG++
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCKGYK 203


>gi|241956944|ref|XP_002421192.1| 2'-O-ribose RNA methyltransferase, putative; AdoMet-dependent rRNA
           methyltransferase, putative;
           S-adenosyl-L-methionine-dependent methyltransferase,
           putative [Candida dubliniensis CD36]
 gi|223644535|emb|CAX41353.1| 2'-O-ribose RNA methyltransferase, putative [Candida dubliniensis
           CD36]
          Length = 830

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 8/202 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVA 85
             +H     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA
Sbjct: 5   QKKHSKGRLDRYYYLAKEKGYRARSSFKIVQINEKYGHFLEKSKVVIDLCAAPGSWCQVA 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMA 144
           +++   N   + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A
Sbjct: 65  SQLCPVN---SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA 121

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
                    D      L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV 
Sbjct: 122 PNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVE 181

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E+F++ KGF+
Sbjct: 182 ATKPPASRNVSAEIFVVCKGFK 203


>gi|148702027|gb|EDL33974.1| Ftsj homolog 1 (E. coli), isoform CRA_c [Mus musculus]
          Length = 310

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 16/196 (8%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A     
Sbjct: 65  GQG-SGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDGKC 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
                         AA   A  +L +GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 --------------AALNIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPK 169

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 170 SSRNSSIEAFAVCQGY 185


>gi|115528317|gb|AAI24923.1| LOC431876 protein [Xenopus laevis]
          Length = 762

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N K Q LQ  R +VDL +
Sbjct: 1   MGKKGKVGKSR-------KDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ ++ ID++ ++PI  V   + D    D  + +++ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIIGIDLVPIKPIPNVLTLQEDITTEDCRQAVKKHLQTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A     +   D    + L   A   A + L+ GG F+ K F+      +L +
Sbjct: 111 ADVVLNDGAPNVGANWTHDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L++ F+KV   KP ASR+ES E+F++ +GF
Sbjct: 171 LQQFFKKVNSTKPQASRSESAEIFVVCQGF 200


>gi|21672644|ref|NP_660711.1| cell division protein FtsJ [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25091195|sp|Q8K9G7|RLME_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|21623279|gb|AAM67922.1| cell division protein FtsJ [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 206

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           ++    SS  WL+ H  D YV+ A+ +  R+RS +KL +I++ +++ +    ++DLGSSP
Sbjct: 3   SKKKSNSSNRWLSEHFQDQYVKEAKKQKIRSRSWFKLEEIDKNNRLFKPGMNVLDLGSSP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPD 137
           G WSQ AA+  G       ++A DIL M+ I GV FF+ DF +  +   I   +   N +
Sbjct: 63  GGWSQYAAKKIGKKGY---ILACDILPMKKIKGVDFFQGDFCNKKTLNLILTNLSNVNLN 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           L++SDMA    G   ID  R + +C+     +  +L+  G  LVK+FQG   N+    +K
Sbjct: 120 LIMSDMAPNITGCSSIDMPRIIEICKTVFTISDHVLSRNGVVLVKSFQGEGFNEFFAQMK 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAK 223
             F K+   KP  SR+ S E+F+LA 
Sbjct: 180 NLFSKIKICKPKTSRSRSREIFMLAT 205


>gi|327297282|ref|XP_003233335.1| rRNA methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326464641|gb|EGD90094.1| rRNA methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 834

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 35  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 91

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A         D
Sbjct: 92  SLIVGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAPNVGTAWVQD 151

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR  
Sbjct: 152 AFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQLFTTVEATKPPSSRNV 211

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 212 SAEIFVVCLGFK 223


>gi|225684454|gb|EEH22738.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb03]
          Length = 826

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA    S    
Sbjct: 13  DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPS---Q 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + +V +D+  ++PI  V  F+ D         IRQ       D VL D A         D
Sbjct: 70  SLIVGVDLAPIKPIPKVITFQSDITTDKCRATIRQHFKSWKADTVLHDGAPNVGVAWVQD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A E L  GG F+ K F+    N +L + K+ F  V   KP +SR  
Sbjct: 130 AFSQAELVLQSLKLATEFLAPGGTFVTKVFRSKDYNPLLWVFKQLFTSVKATKPPSSRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 190 SAEIFVVCLGFK 201


>gi|121713778|ref|XP_001274500.1| rRNA methyltransferase Spb1, putative [Aspergillus clavatus NRRL 1]
 gi|119402653|gb|EAW13074.1| rRNA methyltransferase Spb1, putative [Aspergillus clavatus NRRL 1]
          Length = 796

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
                    + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECM---PTQSIIVGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLAEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|11499633|ref|NP_070875.1| cell division protein (ftsJ) [Archaeoglobus fulgidus DSM 4304]
 gi|9911012|sp|O28228|RLME_ARCFU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2648490|gb|AAB89203.1| cell division protein (ftsJ) [Archaeoglobus fulgidus DSM 4304]
          Length = 191

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 7/196 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ EG+R+R+AYKLLQ+N   ++++    ++DLG++PG WSQVAA +   
Sbjct: 2   KDRQDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAALL--- 58

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
                RVVA+DI  M+P+  V F + D    ++ E IR+ I  + D+V+SD +    G  
Sbjct: 59  ---GARVVAVDINPMKPLENVTFIRGDITLPETLEKIRE-ISPDYDVVMSDASPKISGKW 114

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            IDHLR++ L  A+   A E+L  GG+F+VK FQG         LK HF+      P AS
Sbjct: 115 TIDHLRSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNELKPHFRFKKFHSPQAS 174

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ + K FRK
Sbjct: 175 RKRSAEVYFIGKRFRK 190


>gi|328711007|ref|XP_003244421.1| PREDICTED: putative ribosomal RNA methyltransferase C4F10.03c-like
           [Acyrthosiphon pisum]
          Length = 307

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 5/200 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y + A+ +GWRARSA+KL+QIN + ++L   +R+VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEQGWRARSAFKLIQINSQFKVLDGVKRVVDLCAAPGSWSQVLSKALY 64

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAY 145
               + ++ ++VA+D+  M P+ GV   K D     +   I     G    DLV+ D A 
Sbjct: 65  SDSDDKDDVKIVAVDLQSMAPLPGVVQLKGDITKESTANEILAQFDGGRLVDLVVFDGAP 124

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L  GG F+ K F+G  ++ ++  L+  F  V+ 
Sbjct: 125 DVTGLHDLDEYVQAQLLLAALNITTYLLKPGGTFIGKIFRGKDSSLLISQLEIFFGDVVV 184

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ + F
Sbjct: 185 AKPCSSRNSSIESFVVCRDF 204


>gi|195112102|ref|XP_002000615.1| GI22429 [Drosophila mojavensis]
 gi|193917209|gb|EDW16076.1| GI22429 [Drosophila mojavensis]
          Length = 254

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS+DWL R + DPYV++A++  +R RSA+KLL++++K++IL+    ++D G++PG
Sbjct: 34  KGKSKSSQDWLTRQLADPYVEKARMLNFRCRSAFKLLEMDDKYKILKPGDVVLDCGAAPG 93

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVAA  T +N    R     V +ID+L    + G   F   DF    + + +R+++ 
Sbjct: 94  SWTQVAAERTNANGKTERMPRGAVYSIDLLHFHAVPGATIFGGMDFTSPLAQQRLRESLA 153

Query: 134 GN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   + VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +
Sbjct: 154 GRSVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKIWDNGDVPKL 213

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +  +++KV  VKP ASR +S E FLLA+GF+
Sbjct: 214 ERDILCYYEKVKRVKPRASRGDSAEHFLLARGFK 247


>gi|322706026|gb|EFY97608.1| AdoMet-dependent rRNA methyltransferase spb1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 840

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
            +   N   + +V +D+  ++PI  V  F+ D    +    IRQ +     D VL D A 
Sbjct: 64  EVMPMN---SLIVGVDLAPIKPIPRVITFQSDITTENCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +L + F KV  
Sbjct: 121 NVGTAWAQDSFNQAELALQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|300123620|emb|CBK24892.2| Ribosomal RNA methyltransferase [Blastocystis hominis]
          Length = 259

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           S+R      ++ +    SS  WL+R + DPY   A+ EG+R+R+ YKL +I+E+  + + 
Sbjct: 41  SARNIKKDYLRQKGKSHSSTIWLDRQLRDPYTIMAKEEGYRSRAVYKLKEIDERFHVFRE 100

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
              +VD+G++PG WSQ A    G    ++ V +ID+LD+EPI GV F   DF+   +   
Sbjct: 101 GNIVVDVGAAPGGWSQYAVERVGITIPHS-VFSIDLLDIEPITGVHFLCGDFMSESARCK 159

Query: 128 IRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
           +   I     D+V+SD+A    G   IDH + + +CE+   FA  +       ++K  QG
Sbjct: 160 LEDYIDNRRVDVVISDIAPNFSGDHSIDHEKQIDMCESVIEFAKRVAKKDCSVVLKVLQG 219

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                 +  ++  FQ V  +KP ASR +S E++ + K F
Sbjct: 220 EEFPSFMKSVRSQFQSVNLIKPKASRKKSTEIYCVLKHF 258


>gi|254573574|ref|XP_002493896.1| AdoMet-dependent methyltransferase involved in rRNA processing and
           60S ribosomal subunit maturation [Pichia pastoris GS115]
 gi|238033695|emb|CAY71717.1| AdoMet-dependent methyltransferase involved in rRNA processing and
           60S ribosomal subunit maturation [Pichia pastoris GS115]
 gi|328354283|emb|CCA40680.1| hypothetical protein PP7435_Chr4-0516 [Pichia pastoris CBS 7435]
          Length = 828

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 10/212 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLG 75
           +  ++ + +S+  L     D Y   A+ +G+RARS++KLLQINEK+   L+ +R ++DL 
Sbjct: 1   MGTKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKLLQINEKYGHFLEKSRVVIDLC 55

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-G 134
           ++PGSW QVA+++   NA    ++ +DI+ ++P+     F+ D    D    +R  +   
Sbjct: 56  AAPGSWCQVASQVCPVNA---LIIGVDIVQIKPLPNCLTFQSDITTEDCRSKLRGHMKTW 112

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D VL D A         D      L   A   A+E L +GG F+ K F+    N+++ 
Sbjct: 113 KADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLGVGGTFVTKIFRSKDYNNLMW 172

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + ++ F KV   KP ASR  S E+F++ KGF+
Sbjct: 173 IFQQLFDKVEATKPPASRNVSAEIFVVCKGFK 204


>gi|171692335|ref|XP_001911092.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946116|emb|CAP72917.1| unnamed protein product [Podospora anserina S mat+]
          Length = 954

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 99  QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAA 158

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                ++    ++ +D+  ++PI  V  F+ D         IR  +     D VL D A 
Sbjct: 159 ETMPKDSI---IIGVDLSPIKPIPKVITFQSDITTEKCRATIRTHLKTWKADCVLHDGAP 215

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +LK+ F KV  
Sbjct: 216 NVGTAWVQDSFNQAELALHSLKLATEFLIEGGAFVTKVFRSKDYNSLLWVLKQLFTKVEA 275

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  G++
Sbjct: 276 TKPPSSRNVSAEIFVVCLGYK 296


>gi|256270950|gb|EEU06076.1| Spb1p [Saccharomyces cerevisiae JAY291]
          Length = 841

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 113/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASKLCPVN---SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L + G F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|6319796|ref|NP_009877.1| Spb1p [Saccharomyces cerevisiae S288c]
 gi|6226708|sp|P25582|SPB1_YEAST RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase; AltName: Full=Suppressor of PAB1
           protein 1
 gi|1907120|emb|CAA42391.1| putative methylase [Saccharomyces cerevisiae]
 gi|151943780|gb|EDN62080.1| AdoMet-dependent rRNA methyltransferase [Saccharomyces cerevisiae
           YJM789]
 gi|285810648|tpg|DAA07432.1| TPA: Spb1p [Saccharomyces cerevisiae S288c]
          Length = 841

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 113/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASKLCPVN---SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L + G F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|156402433|ref|XP_001639595.1| predicted protein [Nematostella vectensis]
 gi|156226724|gb|EDO47532.1| predicted protein [Nematostella vectensis]
          Length = 306

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+  G+RARSA+KL+Q+N K   LQ +R ++DL ++PG W QVA++    
Sbjct: 9   KRRKDKFYHLAKETGYRARSAFKLIQLNRKFGFLQKSRCLIDLCAAPGGWLQVASKFM-- 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
              ++ +V +D++ ++PI  V  F  D       + +++ +     D VL+D A      
Sbjct: 67  -PMSSIIVGVDLVPIKPIKNVITFTEDITTERCKQLLKKELKTWKADCVLNDGAPNVGTA 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D      L  +A   A E L  GG F+ K F+      +L + ++ F+ V   KP A
Sbjct: 126 WVQDAFTQAELTLSALKLACENLKEGGWFITKVFRSKDYQPLLWVFQQLFKSVHSTKPQA 185

Query: 211 SRAESVEMFLLAKGF 225
           SR ES E+F++ +G+
Sbjct: 186 SRNESAEIFVVCQGY 200


>gi|149236601|ref|XP_001524178.1| AdoMet-dependent rRNA methyltransferase SPB1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452554|gb|EDK46810.1| AdoMet-dependent rRNA methyltransferase SPB1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 799

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ ++P+     F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASQLCPIN---SLIIGVDIVPIKPLPNCITFQSDITTEDCRSKLRGHMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L  GG F+ K F+    N+++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKVFRSRDYNNLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP +SR  S E+F++ KGF+
Sbjct: 174 QQLFEKVEATKPPSSRNVSAEIFVVCKGFK 203


>gi|68491995|ref|XP_710224.1| potential rRNA methyltransferase [Candida albicans SC5314]
 gi|73621935|sp|Q59KF3|SPB1_CANAL RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|46431386|gb|EAK90959.1| potential rRNA methyltransferase [Candida albicans SC5314]
          Length = 845

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 8/202 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVA 85
             +H     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA
Sbjct: 5   QKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVA 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMA 144
           +++   N   + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A
Sbjct: 65  SQLCPIN---SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA 121

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
                    D      L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV 
Sbjct: 122 PNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVE 181

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E+F++ KGF+
Sbjct: 182 ATKPPASRNVSAEIFVVCKGFK 203


>gi|195349217|ref|XP_002041143.1| GM15199 [Drosophila sechellia]
 gi|194122748|gb|EDW44791.1| GM15199 [Drosophila sechellia]
          Length = 302

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KL+ ++E + IL   +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKDEGWRARSAFKLIHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 91  SNANNT------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSD 142
                       +++A+D+  M PI G+   + D     + E I    GG     LV+ D
Sbjct: 65  DTCETDDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K
Sbjct: 125 GAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
               KP +SR  S+E F++  GF
Sbjct: 185 FDIYKPPSSRPSSIEAFVVCSGF 207


>gi|194742497|ref|XP_001953739.1| GF17080 [Drosophila ananassae]
 gi|190626776|gb|EDV42300.1| GF17080 [Drosophila ananassae]
          Length = 301

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKEEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 91  SNANNT------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVL 140
                       +++A+D+  M PI GV   + D     + E I    G        LV+
Sbjct: 65  DTCQTDDEKAAVKIIAVDLQAMAPIRGVIQLQGDITKQSTAEAIIGHFGDNKEDKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  AA   A  +L  GG F+ K F+G  T  +   +K  F
Sbjct: 125 CDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATWLLSSQMKIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           +K    KP +SR  S+E F++   F
Sbjct: 185 KKFDIYKPPSSRPSSIEAFVVCSDF 209


>gi|254468491|ref|ZP_05081897.1| ribosomal RNA large subunit methyltransferase J [beta
           proteobacterium KB13]
 gi|207087301|gb|EDZ64584.1| ribosomal RNA large subunit methyltransferase J [beta
           proteobacterium KB13]
          Length = 205

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               + ++W+  H++D +V+RAQ +G+R+R+AYK +++N+K+ +++ N RIVDLGS+PGS
Sbjct: 2   KKTRTKKNWIKEHLSDEFVKRAQKDGFRSRAAYKFIEMNDKYHLIRPNDRIVDLGSAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           WSQ A+ +  +N    ++ AID+L M+ +    F + DF +L   + + + +     DLV
Sbjct: 62  WSQAASSLISNNG---KIFAIDLLPMDDVKNTTFIQGDFRELSILQKLEELLENTAVDLV 118

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G +  D      L + +  FA + L   G F+VKTF G    + +  L+  
Sbjct: 119 ISDMAPNISGIKSRDQAMINDLNDLSLKFASDWLKPKGHFMVKTFMGSGFEEYVKKLRSL 178

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F KV   KP +SR  S E FL+    R
Sbjct: 179 FNKVKIEKPDSSRDRSAEFFLIGLEKR 205


>gi|68491984|ref|XP_710229.1| potential rRNA methyltransferase [Candida albicans SC5314]
 gi|46431392|gb|EAK90964.1| potential rRNA methyltransferase [Candida albicans SC5314]
          Length = 853

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 8/202 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVA 85
             +H     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA
Sbjct: 5   QKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVA 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMA 144
           +++   N   + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A
Sbjct: 65  SQLCPIN---SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA 121

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
                    D      L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV 
Sbjct: 122 PNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVE 181

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E+F++ KGF+
Sbjct: 182 ATKPPASRNVSAEIFVVCKGFK 203


>gi|118097774|ref|XP_414772.2| PREDICTED: similar to cell division protein FtsJ [Gallus gallus]
          Length = 244

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 10  RRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN 68
           R  L   V+  +    +   WL R   DP+V+ A+ + +R RSA+KLL+I++K  IL+  
Sbjct: 18  RSRLHSMVRLLKKKTATENWWLERQWRDPFVKAAKQQHYRCRSAFKLLEIDDKLHILRPG 77

Query: 69  RRIVDLGSSPGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGVKFF-KFDFLDL 122
             ++D G++PG+WSQVA            A    V+ +D+L + P+ G  F  + D  D 
Sbjct: 78  LSVLDCGAAPGAWSQVAVERVNALGTDPAAPTGFVIGVDLLRISPLEGAVFLSQADITDP 137

Query: 123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +   I+  +     D++LSDMA    G +++DH + +SLC      +  +L   G  L 
Sbjct: 138 GTQRAIQNLLPAEKVDVILSDMAPNATGIKELDHQKLISLCLGLVNLSQSILKPKGTMLC 197

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K + G  +  +   LK+ FQ V  +KP ASR +S E + LA+ ++
Sbjct: 198 KFWDGHESRVLQNKLKEQFQDVRTIKPQASRKDSSESYYLARLYK 242


>gi|195570241|ref|XP_002103117.1| GD19132 [Drosophila simulans]
 gi|194199044|gb|EDX12620.1| GD19132 [Drosophila simulans]
          Length = 302

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 91  SNANNT------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSD 142
                       +++A+D+  M PI G+   + D     + E I    GG     LV+ D
Sbjct: 65  DTCETDDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K
Sbjct: 125 GAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
               KP +SR  S+E F++  GF
Sbjct: 185 FDIYKPPSSRPSSIEAFVVCSGF 207


>gi|225717720|gb|ACO14706.1| ribosomal RNA methyltransferase CG11447 [Caligus clemensi]
          Length = 249

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 6/203 (2%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++AQ EG+RARSAYKLL+INEK +IL+    +++ G +PGSW+QV 
Sbjct: 48  SSSWIRRQSKDIYVKKAQSEGYRARSAYKLLEINEKFKILRPKMTVMECGGAPGSWTQVL 107

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
            +   S      V++ D+LD +P+       + DF    + E I   +  +  DLVLSDM
Sbjct: 108 TQKVHSGE----VISCDLLDYDPVDHAIILPQSDFTLPQTQEIILGHLKADGFDLVLSDM 163

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G  ++ H + ++L    T FAL   N G  FL K + G  T D +  LK+ ++ V
Sbjct: 164 APNASGMSELSHQQILNLSYEVTKFALRHSNKGAIFLTKLWDGEGTQDFISDLKRFYRNV 223

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
             VKP ASR ES E+++ A  F+
Sbjct: 224 QIVKPKASRKESAEIYIYASKFK 246


>gi|270009490|gb|EFA05938.1| hypothetical protein TcasGA2_TC008754 [Tribolium castaneum]
          Length = 460

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 47/243 (19%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D + ++A+ +GWRARSA+KLLQI+EK  IL+   + VDL ++PGSWSQV +R   
Sbjct: 5   SRDRRDIFYRKAKEQGWRARSAFKLLQIDEKFNILEGVTKAVDLCAAPGSWSQVLSRRLY 64

Query: 89  --------------------------------------------TGSNANNTRVVAIDIL 104
                                                       T     + ++VA+D+ 
Sbjct: 65  LGEKINIKPKCKLFYTENEDYMSEDMVECSTSKIVEPKKEEVTETPQKNKDVKIVAVDLQ 124

Query: 105 DMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
            M P+ GV   + D  +  + E I     G + DLV+ D A    G   ID      L  
Sbjct: 125 PMSPLPGVIQLQGDITEYKTAEAIISHFEGDHADLVVCDGAPDVTGLHCIDIYIQAQLLL 184

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            A      +L  GG F+ K F+    + +   L   F+ VI VKP +SR  S+E F++ +
Sbjct: 185 GALHITCNVLKPGGTFVAKIFRAKDCDLLTQQLLMLFEDVITVKPTSSRNSSIEAFVVCR 244

Query: 224 GFR 226
            F+
Sbjct: 245 KFK 247


>gi|194900526|ref|XP_001979808.1| GG21940 [Drosophila erecta]
 gi|190651511|gb|EDV48766.1| GG21940 [Drosophila erecta]
          Length = 300

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSD 142
               T       +++A+D+  M PI G+   + D     + E I    GG     LV+ D
Sbjct: 65  DACETDDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIISHFGGNEKAQLVVCD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K
Sbjct: 125 GAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
               KP +SR  S+E F++  GF
Sbjct: 185 FDIYKPPSSRPSSIEAFVVCSGF 207


>gi|154283311|ref|XP_001542451.1| hypothetical protein HCAG_02622 [Ajellomyces capsulatus NAm1]
 gi|150410631|gb|EDN06019.1| hypothetical protein HCAG_02622 [Ajellomyces capsulatus NAm1]
          Length = 620

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECMPSQ---SLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFNTVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCQGFK 201


>gi|198454814|ref|XP_001359736.2| GA11008 [Drosophila pseudoobscura pseudoobscura]
 gi|198132965|gb|EAL28888.2| GA11008 [Drosophila pseudoobscura pseudoobscura]
          Length = 249

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 123/214 (57%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL++   ++D G++PG
Sbjct: 31  KGKSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYKILKTGDAVLDCGAAPG 90

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI- 132
           SW+QVA   T ++    R     V +ID+L    + G   +   DF    S + +R+A+ 
Sbjct: 91  SWTQVAVERTNAHGKMERAPVGAVFSIDLLHFHAVPGATIYGGMDFTTPLSQQRLREALA 150

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   + VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +
Sbjct: 151 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKVWDNGDVPKL 210

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + K ++KV  VKP ASR +S E FL+A+G++
Sbjct: 211 ERNMLKFYEKVKRVKPRASRGDSAEHFLVARGYK 244


>gi|118404228|ref|NP_001072428.1| FtsJ homolog 3 [Xenopus (Silurana) tropicalis]
 gi|113197746|gb|AAI21673.1| FtsJ homolog 3 [Xenopus (Silurana) tropicalis]
          Length = 298

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  ++  G SR        D +   A+  G+R+RSA+KL+Q+N K Q L   R +VDL +
Sbjct: 1   MGKKAKVGKSR-------KDKFYHLAKETGYRSRSAFKLIQLNRKFQFLPKARALVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ ++ +D++ ++PI  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PISSLIIGVDLVPIKPIPKVLTLQEDITTEACRQTVRKHLQTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A     +   D    + L   A   A + L+ GG F+ K F+      +L +
Sbjct: 111 ADVVLNDGAPNVGANWTHDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L++ F+KV   KP ASR+ES E+F++ +GF
Sbjct: 171 LQQFFKKVNSTKPQASRSESAEIFVVCQGF 200


>gi|291228520|ref|XP_002734226.1| PREDICTED: Putative rRNA methyltransferase 3-like [Saccoglossus
           kowalevskii]
          Length = 261

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + + A+  G+RARSA+KLLQ+N K Q LQ +R ++DL ++PG W QVA+       
Sbjct: 11  RKDKFYKLAKETGYRARSAFKLLQLNRKFQFLQKSRVLIDLCAAPGGWLQVAS---NHMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ +V +D++ + PI      + D         +R  +     D+VL+D A     +  
Sbjct: 68  VSSLIVGVDLVPIRPIPNTITVQADITTEKCRSLLRNELKDWKADIVLNDGAPNVGKNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D     SL   A   A + L  GG F+ K F+      ++ + K+ F+KV   KP ASR
Sbjct: 128 HDAFTQASLTLKALKLASDFLTQGGWFVTKVFRSKDYQPLMWVFKQLFKKVHATKPPASR 187

Query: 213 AESVEMFLLAKGF 225
           +ES E+F++ +G+
Sbjct: 188 SESAEIFVVCQGY 200


>gi|302908896|ref|XP_003049953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730890|gb|EEU44240.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 833

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
            +   N   + +V +D+  ++PI  V  F+ D         IRQ       D VL D A 
Sbjct: 64  EVMPPN---SLIVGVDLAPIKPIPRVITFQSDITTEKCRATIRQHFKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   A   A E L  GG F+ K F+    N +L +L + F KV  
Sbjct: 121 NVGTAWAQDSFNQAELALQAMKLATEFLIEGGTFVTKVFRSKDYNPLLWVLNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|156550167|ref|XP_001599955.1| PREDICTED: similar to ribosomal RNA methyltransferase [Nasonia
           vitripennis]
          Length = 832

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA    
Sbjct: 7   IGKQRRDKYYHLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVA---H 63

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTI 148
            +   ++ +V +D+  ++P+ G      D        +  R+      D+VL+D A    
Sbjct: 64  ENMPVSSIIVGVDLFPIKPVPGCIGLIGDITTDKCRIDLARELKTWKADVVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +  ID  +  +L  +A   A + L  GG F+ K F+    N ++ + K+ F+KV   KP
Sbjct: 124 KNWLIDAYQQATLTLSALKLATQFLRPGGWFVTKVFRSKDYNPLIWVFKQMFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRNESAEIFVVCQHY 200


>gi|195395790|ref|XP_002056517.1| GJ10992 [Drosophila virilis]
 gi|194143226|gb|EDW59629.1| GJ10992 [Drosophila virilis]
          Length = 254

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS+DWL R + DPYV++A++  +R RSA+KLL++++K++IL+    ++D G++PG
Sbjct: 34  KGKSKSSQDWLIRQLADPYVEKARMLNFRCRSAFKLLEMDDKYKILKPGDVVLDCGAAPG 93

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI- 132
           SW+QVAA  T +N    R     V +ID+L    + G   F   DF    + + +R+++ 
Sbjct: 94  SWTQVAAERTNANGKVERAPRGAVYSIDLLHFHAVPGATIFGGMDFTTPLAQQRLRESLA 153

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   + VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +
Sbjct: 154 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLKFALAMSAPQANLVVKIWDNGDVPKL 213

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +  H++KV  VKP ASR +S E FLLA+G++
Sbjct: 214 ERDILCHYEKVKRVKPRASRGDSAEHFLLARGYK 247


>gi|332255476|ref|XP_003276857.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
           methyltransferase 1-like [Nomascus leucogenys]
          Length = 329

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 2/196 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A     
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDGKX 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +K+       L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  KP 
Sbjct: 124 QQKVGGQAGAPLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPR 183

Query: 210 ASRAESVEMFLLAKGF 225
           +SR  S+E F + +G+
Sbjct: 184 SSRNSSIEAFAVCQGY 199


>gi|115949002|ref|XP_001176916.1| PREDICTED: similar to MGC140597 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 443

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+RSA+KL+Q+N K   LQ +R  +DL ++PG W+   + + 
Sbjct: 7   IGKQRKDRYYHLAKETGYRSRSAFKLIQLNRKFSFLQESRVCIDLCAAPGGWNMPISSM- 65

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                   ++ +D+  ++PI  V  F  D         +R+ +     D VL D A    
Sbjct: 66  --------IIGVDLFPIKPIPNVVSFTCDITTTKCRMQLRKEMKTWKADCVLHDGAPNVG 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
               +D      L   A   A+E LN GG F+ K F+      +L +  + F+KV   KP
Sbjct: 118 TSWVLDAFTQAQLTLHALKLAVEFLNKGGWFITKVFRSKDYQPLLWVFHQMFRKVHVTKP 177

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ +GF
Sbjct: 178 QASRNESAEIFVVCQGF 194


>gi|255715916|ref|XP_002554239.1| KLTH0F00704p [Lachancea thermotolerans]
 gi|238935622|emb|CAR23802.1| KLTH0F00704p [Lachancea thermotolerans]
          Length = 830

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK    ++ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKFGHFMEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+ +   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASNLCPVN---SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L +GG F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            + F KV   KP ASR  S E+F++ KGF+
Sbjct: 174 SQLFDKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|169779173|ref|XP_001824051.1| AdoMet-dependent rRNA methyltransferase spb1 [Aspergillus oryzae
           RIB40]
 gi|238499797|ref|XP_002381133.1| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]
 gi|83772790|dbj|BAE62918.1| unnamed protein product [Aspergillus oryzae]
 gi|220692886|gb|EED49232.1| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]
          Length = 802

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
               + +    ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECMPAQSI---IIGVDLAPIKPIPRVITFQSDITTEKCRTTIRQHLKHWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNALLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|71400687|ref|XP_803129.1| FtsJ cell division protein [Trypanosoma cruzi strain CL Brener]
 gi|70865797|gb|EAN81683.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
          Length = 651

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S + +          D Y + A+ +G+RARSA+KL+Q+N K+  L  +R +VDL +
Sbjct: 1   MGTKSKKKAKTRL------DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCA 54

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG W QVAA+        +++V +D++ + PI GVK F  D  D  + + I       P
Sbjct: 55  APGGWCQVAAKHMPVG---SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYFKKEP 111

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+ D A    G    D     +L   A   A  ML   G F+ K F+    + ++ +
Sbjct: 112 VDCVIHDGAPNVGGVWSRDLFEQNALVLHAAKMAASMLKPSGWFVTKVFRSQDFHKLMWV 171

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F KV   KP+ASR ES E+F++  GF+
Sbjct: 172 LKQLFDKVEATKPLASRMESAEIFVVCAGFK 202


>gi|301109152|ref|XP_002903657.1| ribosomal RNA large subunit methyltransferase J, putative
           [Phytophthora infestans T30-4]
 gi|262097381|gb|EEY55433.1| ribosomal RNA large subunit methyltransferase J, putative
           [Phytophthora infestans T30-4]
          Length = 243

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 8   SSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
             R    + VK+ +    +S  W+ R  +DP V++A+ EG R+R+A+KL ++N++ Q+L+
Sbjct: 13  GCRCAPLRAVKSLKGKSNASARWVRRQWSDPVVKQAKREGLRSRAAFKLRELNDRFQLLR 72

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNA----NNTRVVAIDILDMEPILGVKFFKFDFLDL 122
               ++DLG++PG W+QVA   T   +       RVVA+D+L  +PI G      DF   
Sbjct: 73  RGDMVLDLGAAPGGWTQVAVEATTPKSQKTVGPPRVVAVDLLHFDPIEGASIVVGDFRQA 132

Query: 123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
              + + +A+ G   D+VLSDMA    G+   D    + LC  A   A   L  GG+F  
Sbjct: 133 AVRKQLAEALRGRKADVVLSDMAPSFSGNFLTDSQHQLRLCHNALKMAELYLRPGGNFAT 192

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  +   + +    LK  F  V  +KP +SR ES EMFL+AKGF+
Sbjct: 193 KVLRCDGSEEFRADLKASFDVVKGMKPQSSRPESTEMFLVAKGFK 237


>gi|19114041|ref|NP_593129.1| rRNA methyltransferase Spb1 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|9910811|sp|O42832|SPB1_SCHPO RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|4106665|emb|CAA22605.1| rRNA methyltransferase Spb1 (predicted) [Schizosaccharomyces pombe]
          Length = 802

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 4/204 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G S+    +   D + + A+ +G+R+R+A+KL+Q+N+K+  L+  + I+DL ++PG W Q
Sbjct: 2   GKSQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQ 61

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
           VA++        + +V +D+  ++PI     F  D         +R  +     D+VL D
Sbjct: 62  VASKTCKPG---SLIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHD 118

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A         D      L   +   A E L  GG F+ K F+    N++L + K+ F K
Sbjct: 119 GAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNK 178

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S E+F++ +G++
Sbjct: 179 VEATKPPSSRNVSAEIFVVCRGYK 202


>gi|296415586|ref|XP_002837467.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633339|emb|CAZ81658.1| unnamed protein product [Tuber melanosporum]
          Length = 528

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKQKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                N   + +V +D+  ++ I  V  F+ D         +R  +     D VL D A 
Sbjct: 64  ECMPVN---SLIVGVDLAPIKAIPRVITFQSDITTDKCRATLRGHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A + L  GG F+ K F+    N+++ +  + F KV  
Sbjct: 121 NVGTAWVQDAFTQAELVLQSLKLATKFLIEGGTFVTKVFRSRDFNNLMWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR+ S E+F++ KG++
Sbjct: 181 TKPPSSRSVSAEIFVVCKGYK 201


>gi|289621680|emb|CBI51591.1| unnamed protein product [Sordaria macrospora]
          Length = 833

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++  +DL ++PGSW QV A
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               +N+    ++ +D+  ++PI  V  F+ D         IR  +     D+VL D A 
Sbjct: 64  ETMPTNSI---IIGVDLAPIKPIPKVITFQSDITTEKCRATIRTHLKTWKADVVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDSYNQAELALHSLKLATEFLVEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|260941558|ref|XP_002614945.1| hypothetical protein CLUG_04960 [Clavispora lusitaniae ATCC 42720]
 gi|238851368|gb|EEQ40832.1| hypothetical protein CLUG_04960 [Clavispora lusitaniae ATCC 42720]
          Length = 825

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+ +   N   + ++ +DI+ ++P+     F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASNLCPIN---SLIIGVDIVPIKPLPNCITFQSDITTEDCRSKLRGHLKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A E L  GG F+ K F+    N+++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLVLKALKLACENLTQGGTFVTKVFRSKDYNNLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFDKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|255732365|ref|XP_002551106.1| hypothetical protein CTRG_05404 [Candida tropicalis MYA-3404]
 gi|240131392|gb|EER30952.1| hypothetical protein CTRG_05404 [Candida tropicalis MYA-3404]
          Length = 632

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 8/202 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVA 85
             +H     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++PGSW QVA
Sbjct: 5   QKKHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVA 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMA 144
           +++   N   + ++ +DI+ ++P+  V  F+ D    D    +R  +     D VL D A
Sbjct: 65  SQLCPVN---SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGA 121

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
                    D      L   A   A+E L  GG F+ K F+    N+++ + ++ F+KV 
Sbjct: 122 PNVGLGWVQDAFTQSQLTLQALKLAVENLAAGGTFVTKIFRSRDYNNLMWVFQQLFEKVE 181

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR  S E+F++ KGF+
Sbjct: 182 ATKPPASRNVSAEIFVVCKGFK 203


>gi|73670706|ref|YP_306721.1| 23S RNA methyltransferase J [Methanosarcina barkeri str. Fusaro]
 gi|121722047|sp|Q466Q1|RLME_METBF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|72397868|gb|AAZ72141.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanosarcina barkeri
           str. Fusaro]
          Length = 263

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 115/197 (58%), Gaps = 6/197 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y ++A+ EG+R+R+++KL QINE+H I+     +VDLG++PG W QVA  ++
Sbjct: 1   MARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKELS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTI 148
           G      +V+ +D+  + PI GV+  + +     + + I + +G    D+VL D A    
Sbjct: 61  G-----GKVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVLCDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   DH R++ L  +A   A ++L   G+F+VK FQG   ND +  ++ +F + +   P
Sbjct: 116 GNWSYDHARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNFVRTMAYSP 175

Query: 209 VASRAESVEMFLLAKGF 225
            ASR++S E++++ K F
Sbjct: 176 KASRSQSAEIYVIGKKF 192


>gi|326481598|gb|EGE05608.1| rRNA methyltransferase Spb1 [Trichophyton equinum CBS 127.97]
          Length = 791

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + +V +D+  ++PI  V  F+ D         IRQ       D VL D A 
Sbjct: 64  ECMPSQ---SLIVGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQLFTTVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCLGFK 201


>gi|146416169|ref|XP_001484054.1| hypothetical protein PGUG_03435 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 113/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DKYYFLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+ +   N   + ++ +DI+ ++P+     F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASNLCPIN---SLIIGVDIVPIKPLPNCITFQSDITTEDCRSRLRGHMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L +GG F+ K F+    N+++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTLGGTFVTKIFRSRDYNNLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|195353572|ref|XP_002043278.1| GM26867 [Drosophila sechellia]
 gi|194127392|gb|EDW49435.1| GM26867 [Drosophila sechellia]
          Length = 250

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 118/214 (55%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ ILQ    +++ G++PG
Sbjct: 32  KGRSKSSQEWLTRQLTDPYVEKARMMNYRCRSAFKLLEIDDKYGILQPGDTVLECGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + +R+A+ 
Sbjct: 92  SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLREAVQ 151

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M       +VK +  G    +
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|195054507|ref|XP_001994166.1| GH16178 [Drosophila grimshawi]
 gi|193896036|gb|EDV94902.1| GH16178 [Drosophila grimshawi]
          Length = 249

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS+DWL R + DPYV++A++  +R RSA+KLL++++K++IL+    ++D G++PG
Sbjct: 34  KGRSKSSQDWLTRQLADPYVEKARMLNYRCRSAFKLLEMDDKYKILKPGDLVLDCGAAPG 93

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + +R+++ 
Sbjct: 94  SWTQVAVERTNANGKIERAPRGAVYSIDLLHFHAVPGATIFGGMDFTAPLAQQRLRESLA 153

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +
Sbjct: 154 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPHANLVVKIWDNGDVPKL 213

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +  +++KV  VKP ASR +S E FLLA+GF+
Sbjct: 214 ERDILSYYEKVKRVKPRASRGDSAEHFLLARGFK 247


>gi|261403094|ref|YP_003247318.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           vulcanius M7]
 gi|261370087|gb|ACX72836.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           vulcanius M7]
          Length = 248

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 116/206 (56%), Gaps = 8/206 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
            S+ W  +   D Y + A+   +R+R+++KL+Q+NEK  +++  + I+DLG +PG W QV
Sbjct: 4   KSKRWYLQRKRDFYYKLAKKLQYRSRASFKLMQLNEKFNVIKPRKIILDLGCAPGGWMQV 63

Query: 85  AARITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAI---GGNPDLV 139
           A  I G +     V+ +D+  ++P     V   K DF   ++   IR+ I       D+V
Sbjct: 64  AREIVGDDGF---VIGVDLQPVKPFGYDNVVAIKGDFTSEETLNKIRELIPNEEKKVDVV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SD +    G+  +DH R++ L   A   A EML   G+F+ K F G   +D + L+KK+
Sbjct: 121 ISDASPNISGYWDVDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVKLVKKY 180

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV   KP ASR ES E++++AK +
Sbjct: 181 FEKVYITKPQASRKESAEVYVIAKRY 206


>gi|47124733|gb|AAH70677.1| LOC431876 protein [Xenopus laevis]
          Length = 346

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N K Q LQ  R +VDL +
Sbjct: 1   MGKKGKVGKSR-------KDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ ++ ID++ ++PI  V   + D    D  + +++ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIIGIDLVPIKPIPNVLTLQEDITTEDCRQAVKKHLQTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A     +   D    + L   A   A + L+ GG F+ K F+      +L +
Sbjct: 111 ADVVLNDGAPNVGANWTHDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L++ F+KV   KP ASR+ES E+F++ +GF
Sbjct: 171 LQQFFKKVNSTKPQASRSESAEIFVVCQGF 200


>gi|195569596|ref|XP_002102795.1| GD19317 [Drosophila simulans]
 gi|194198722|gb|EDX12298.1| GD19317 [Drosophila simulans]
          Length = 250

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 118/214 (55%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ ILQ    +++ G++PG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILQPGDTVLECGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + +R+A+ 
Sbjct: 92  SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLREALQ 151

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M       +VK +  G    +
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|119174478|ref|XP_001239600.1| hypothetical protein CIMG_09221 [Coccidioides immitis RS]
          Length = 816

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                    + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECM---PTESLIVGVDLAPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELALQSLKLATEFLVAGGTFVTKVFRSKDYNSLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|317027306|ref|XP_001400621.2| ribosomal RNA large subunit methyltransferase J [Aspergillus niger
           CBS 513.88]
          Length = 270

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 46/249 (18%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W  R + D + + A ++G ++R+A+KLLQI+EK+ I +S + +VDLG +PGS
Sbjct: 25  KRFSSSKRWQARQLKDRFTREAAVQGLKSRAAFKLLQIDEKYHIFESGQTVVDLGYAPGS 84

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD----SWEFIRQAIGGNP 136
           WSQVA         + RV+ +DI+  +P  GV   + +FLD +      EF+R A  G P
Sbjct: 85  WSQVAV---ARTQPHGRVLGVDIIPAQPPKGVSTIQGNFLDPNIQAYVREFVRDANRGRP 141

Query: 137 D---------------------------------------LVLSDMAYPTIGHRKIDHLR 157
                                                   +VLSDM   T G    DH  
Sbjct: 142 HPPSTILDAEYDDTQLKSDANASSDKQTDPKQWDRNYSVDVVLSDMMMNTSGISFKDHAG 201

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
           +M LC AA  F+ E+L  GG F+ K +QG     +   L+K F+KV  +KP +SR ES E
Sbjct: 202 SMDLCHAALQFSQEVLRTGGHFVCKFYQGAEDKALEEQLRKLFRKVHRLKPESSRNESKE 261

Query: 218 MFLLAKGFR 226
            + +  G +
Sbjct: 262 SYFIGLGRK 270


>gi|190347121|gb|EDK39337.2| hypothetical protein PGUG_03435 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 113/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DKYYFLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+ +   N   + ++ +DI+ ++P+     F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASNLCPIN---SLIIGVDIVPIKPLPNCITFQSDITTEDCRSRLRGHMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L +GG F+ K F+    N+++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTLGGTFVTKIFRSRDYNNLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|76801271|ref|YP_326279.1| ribosomal RNA methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|83305661|sp|Q3IT24|RLME_NATPD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|76557136|emb|CAI48710.1| probable ribosomal RNA methyltransferase [Natronomonas pharaonis
           DSM 2160]
          Length = 252

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  RA+ +G+R+R+AYKL Q++E   ++     +VDLG++PG W QVA  + G   
Sbjct: 3   RKDDYYNRAKQQGYRSRAAYKLKQLDEAADLINEGDTVVDLGAAPGGWLQVANELAGEAG 62

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               VV +D+  ++PI GV+  + D  +  + E +R  +G   D+V+SDMA    G   +
Sbjct: 63  T---VVGVDLQRIDPIEGVETVRGDMTEDATREKVRALVG-EADVVISDMAPNMTGEYSL 118

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L   A   AL++L   GD + K F+G  T+D+   + + F+ V  + P ASR 
Sbjct: 119 DHARSVHLARMAFETALDLLAPNGDLVAKVFEGPDTDDLRADIDREFEYVRTIHPDASRD 178

Query: 214 ESVEMFLLAKG 224
            S E+F++AKG
Sbjct: 179 SSSELFMVAKG 189


>gi|170030475|ref|XP_001843114.1| ribosomal RNA large subunit methyltransferase J [Culex
           quinquefasciatus]
 gi|167867355|gb|EDS30738.1| ribosomal RNA large subunit methyltransferase J [Culex
           quinquefasciatus]
          Length = 239

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 126/213 (59%), Gaps = 7/213 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +  + SS++WL R +NDP+V+RA++  +R RSA+KLL+I++K+ I++    ++D G++PG
Sbjct: 22  KGKKKSSQEWLTRQLNDPFVERAKMANYRCRSAFKLLEIDQKYNIIKPGFTVIDCGAAPG 81

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIG 133
           SWSQ+A + + ++          V+ +D+L + PI         DF   +S + IR  +G
Sbjct: 82  SWSQIAVKQSNADGAAPGKPKGTVIGVDLLQIYPIAHATTLGNTDFTRTESQDKIRSLLG 141

Query: 134 GN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               D VLSDMA    G R +D    ++LC +   FA+ M +     L+K +  G    +
Sbjct: 142 EKRIDCVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLMKVWDNGEVPAL 201

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              +++++Q+V  +KP ASRA+S E F+LA+GF
Sbjct: 202 EKNIQRYYQQVKRIKPRASRADSAENFVLARGF 234


>gi|72157695|ref|XP_787153.1| PREDICTED: similar to MGC140597 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 415

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+RSA+KL+Q+N K   LQ +R  +DL ++PG W+   + + 
Sbjct: 7   IGKQRKDRYYHLAKETGYRSRSAFKLIQLNRKFSFLQESRVCIDLCAAPGGWNMPISSM- 65

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                   ++ +D+  ++PI  V  F  D         +R+ +     D VL D A    
Sbjct: 66  --------IIGVDLFPIKPIPNVVSFTCDITTTKCRMQLRKEMKTWKADCVLHDGAPNVG 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
               +D      L   A   A+E LN GG F+ K F+      +L +  + F+KV   KP
Sbjct: 118 TSWVLDAFTQAQLTLHALKLAVEFLNKGGWFITKVFRSKDYQPLLWVFHQMFRKVHVTKP 177

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ +GF
Sbjct: 178 QASRNESAEIFVVCQGF 194


>gi|321474059|gb|EFX85025.1| hypothetical protein DAPPUDRAFT_300798 [Daphnia pulex]
          Length = 861

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D +   A+  G+R+R+A+KLLQ+N K + L+ +R ++DL ++PGSW QVA +      
Sbjct: 8   RQDKFYHLAKETGYRSRAAFKLLQLNRKFEFLEKSRVVIDLCAAPGSWMQVAKQ---HMP 64

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ ++ ID+  M+PI G    + D      ++ +++ +     D+VL D A     +  
Sbjct: 65  VSSLIIGIDLFPMKPIQGCLTLQEDITTEKCYQSLKKELTTWKADVVLHDGAPNVGQNWI 124

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L  +A   A E L  GG F+ K F+    N ++ +L++ F++V   KP ASR
Sbjct: 125 YDAFIQNQLVLSALKLATEFLVKGGWFVTKIFRSKDYNSLMWVLRQLFKRVHSTKPHASR 184

Query: 213 AESVEMFLLAKGFR 226
            ES E+F++ +G+R
Sbjct: 185 MESAEIFVICQGYR 198


>gi|312082095|ref|XP_003143302.1| hypothetical protein LOAG_07721 [Loa loa]
 gi|307761535|gb|EFO20769.1| hypothetical protein LOAG_07721 [Loa loa]
          Length = 602

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+R+A+KLLQ+N++ + LQ +R +VDL ++PG W QVA +  
Sbjct: 7   IGKQRRDKYYHLAKEAGYRSRAAFKLLQLNKRFEFLQKSRAVVDLCAAPGGWLQVATQNM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
             ++     + +D++ ++PI      + D     + + +R+ + G   D VL D A    
Sbjct: 67  PVSSLC---IGVDLVPIKPINRCVTLQGDITAEKTRQMVRKELRGWEADCVLHDGAPNIG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L   G F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 RNWVQDAFQQNCLTLSALKLATQILAKNGIFVTKVFRSSDYHHLISVFEKLFRQVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + + K
Sbjct: 184 AASRLESAEIFVVCEKYLK 202


>gi|46126149|ref|XP_387628.1| hypothetical protein FG07452.1 [Gibberella zeae PH-1]
          Length = 839

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RAR+A+KL+Q+N+K+  L+ +R ++DL ++PGSW QVAA +       
Sbjct: 13  DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSRVLIDLCAAPGSWLQVAAEVMPQG--- 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
           + +V  D+  ++PI  V  F+ D    D    + R  +      V+ D A         D
Sbjct: 70  SLIVGCDLSPIKPIPRVTSFQSDITSEDCRATLKRLLLSHKACTVIHDGAPNVGTAWTQD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L   +   A E +   G F+ K F+    N +L + K+ F KV   KP +SR  
Sbjct: 130 AFDQNALVLQSLKLATEFMKPDGTFVTKVFRSKDYNSLLWVFKQLFNKVEATKPSSSRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+F++ +G++
Sbjct: 190 SSEIFVVCRGYK 201


>gi|303314341|ref|XP_003067179.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106847|gb|EER25034.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 816

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                    + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECM---PTESLIVGVDLAPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELALQSLKLATEFLVAGGTFVTKVFRSKDYNSLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|195036840|ref|XP_001989876.1| GH18555 [Drosophila grimshawi]
 gi|193894072|gb|EDV92938.1| GH18555 [Drosophila grimshawi]
          Length = 356

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D + + A+ +GWRARSA+KLLQ +E   +L+   R VDL ++PG WSQV +R   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQADETFNLLEGVERAVDLCAAPGGWSQVLSRRMY 64

Query: 91  S-----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
                      +++A+D   M PI GV   + D     + + I +  GG    LV+SD A
Sbjct: 65  EPRTVEEREKVKIIAVDTQGMAPIDGVTQLRADITKESTADAIIEFFGGKKAQLVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G    D      L  +A   A  +L  GG F+ K ++   T+ +   L++ F+ V 
Sbjct: 125 PDVTGSHDWDAYMQAQLLLSALSIATYILEEGGSFMGKVYRAANTSKVYLQLQRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVARQF 205


>gi|126138018|ref|XP_001385532.1| AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA
           methyltransferase) (S-adenosyl-L-methionine-dependent
           methyltransferase) [Scheffersomyces stipitis CBS 6054]
 gi|126092810|gb|ABN67503.1| AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA
           methyltransferase) (S-adenosyl-L-methionine-dependent
           methyltransferase) [Scheffersomyces stipitis CBS 6054]
          Length = 831

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ ++P+     F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASQLCPIN---SLIIGVDIVPIKPLPNCITFQSDITTEDCRSRLRGHMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L  GG F+ K F+    N+++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLAAGGTFVTKIFRSRDYNNLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFDKVEATKPPASRTVSAEIFVVCKGFK 203


>gi|21356387|ref|NP_650835.1| CG11447 [Drosophila melanogaster]
 gi|9910869|sp|Q9VDT6|RRMJ1_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG11447;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7300552|gb|AAF55704.1| CG11447 [Drosophila melanogaster]
 gi|17945992|gb|AAL49040.1| RE49934p [Drosophila melanogaster]
 gi|220957638|gb|ACL91362.1| CG11447-PA [synthetic construct]
 gi|220960190|gb|ACL92631.1| CG11447-PA [synthetic construct]
          Length = 250

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ IL+    +++ G++PG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + +R+A+ 
Sbjct: 92  SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREALQ 151

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M       +VK +  G    +
Sbjct: 152 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|195450132|ref|XP_002072378.1| GK22358 [Drosophila willistoni]
 gi|194168463|gb|EDW83364.1| GK22358 [Drosophila willistoni]
          Length = 249

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R ++DPYV++A +  +R RSA+KLL+I++K+ ++Q    ++D G++PG
Sbjct: 34  KGKSKSSQEWLTRQLSDPYVEKAHMMNYRCRSAFKLLEIDDKYHLMQPGYTVIDCGAAPG 93

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAI- 132
           SW+QVA   T +N    +     V++ID+L    + G   +   DF    + + +++++ 
Sbjct: 94  SWTQVAVERTNANGKQEKKPLGSVISIDLLHFHAVPGAVIYGGMDFTSAVAQQRLKESLA 153

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   + VLSDMA    G R +D     +LC     FAL M     + +VK +  G    +
Sbjct: 154 GRRVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSGPDANLVVKVWDNGDVPKL 213

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + +H++KV  VKP ASR +S E FL+A+GFR
Sbjct: 214 EKTMLQHYEKVKRVKPRASRGDSAEHFLVARGFR 247


>gi|321438509|emb|CBZ12268.1| putative FtsJ cell division protein [Leishmania major strain
           Friedlin]
          Length = 924

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMAIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|320037455|gb|EFW19392.1| rRNA methyltransferase Spb1 [Coccidioides posadasii str. Silveira]
          Length = 712

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                    + +V +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECM---PTESLIVGVDLAPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELALQSLKLATEFLVAGGTFVTKVFRSKDYNSLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|194741340|ref|XP_001953147.1| GF17621 [Drosophila ananassae]
 gi|190626206|gb|EDV41730.1| GF17621 [Drosophila ananassae]
          Length = 254

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 73/214 (34%), Positives = 119/214 (55%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL++++K+ IL+    ++D G++PG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEMDDKYGILRPGDTVLDCGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + +R+++ 
Sbjct: 92  SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSTLAQKRLRESLN 151

Query: 134 GN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   + VLSDMA    G R +D     +LC     FA+ M       +VK +  G    +
Sbjct: 152 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFAIAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 212 ESNMLRFYEKVKRVKPRASRGDSAEHFLVARSFK 245


>gi|84996593|ref|XP_953018.1| ribosomal RNA methyltransferase (FtsJ homologue) [Theileria
           annulata strain Ankara]
 gi|65304014|emb|CAI76393.1| ribosomal RNA methyltransferase (FtsJ homologue), putative
           [Theileria annulata]
          Length = 237

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 117/205 (57%), Gaps = 1/205 (0%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
               S +W+ R I D Y+ +  ++ +R+RSAYKL+++++K+ I + N+ +V+LG  PG W
Sbjct: 10  ASTHSSEWVRRQITDRYLIQKHIDNYRSRSAYKLIELDDKYFIFRKNQTVVELGCYPGGW 69

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           +QVA   T + A+++RV+ ID   ++PI    F K +  D ++   +   + G   D+VL
Sbjct: 70  AQVALERTLTGASSSRVIGIDKTQIDPIPNYDFIKGEINDQETHNKLLTLLDGVKADVVL 129

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD+A    G +  DHL +  LC  A     +++ +GG F+VK F GG  +     L+  F
Sbjct: 130 SDLAPNCTGIKMDDHLNSAELCLQAASLMEKIITVGGTFVVKMFMGGQLDRYKTYLRSLF 189

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            +V   KP A R+ES EM+ + K F
Sbjct: 190 SEVRSAKPKACRSESKEMYFVCKNF 214


>gi|146091082|ref|XP_001466438.1| FtsJ cell division protein [Leishmania infantum JPCM5]
 gi|134070800|emb|CAM69158.1| putative FtsJ cell division protein [Leishmania infantum JPCM5]
          Length = 925

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMAIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|73621933|sp|Q751U1|SPB1_ASHGO RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
          Length = 845

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            R+ + +S+  L     D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++
Sbjct: 2   GRTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+ +   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASNLCPVN---SLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A     +   D      L   A   A+E L +GG F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFDKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|322500269|emb|CBZ35347.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 925

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMAIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|116206520|ref|XP_001229069.1| hypothetical protein CHGG_02553 [Chaetomium globosum CBS 148.51]
 gi|88183150|gb|EAQ90618.1| hypothetical protein CHGG_02553 [Chaetomium globosum CBS 148.51]
          Length = 754

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QV A
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVCA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                ++    +V +D+  ++PI  V  F+ D         IR  +     D VL D A 
Sbjct: 64  ETMPKDSI---IVGVDLAPIKPIPKVITFQSDITTEKCRATIRTHLKTWKADCVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +L + F KV  
Sbjct: 121 NVGTAWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVLNQLFTKVHA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCLGFK 201


>gi|73621842|sp|Q5ZKM1|RRMJ3_CHICK RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
          Length = 832

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 11/211 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S  G SR        D +   A+  G+R+RSA+KLLQ+N K Q LQ  R ++DL +
Sbjct: 1   MGKKSKVGKSRR-------DKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVA++       ++ V+ +D++ ++PI  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVASKFM---PVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D     +L   A   A E L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++ F KV   KP ASR ES E+F++ +G++
Sbjct: 171 FQQFFHKVQATKPQASRNESAEIFVVCQGYQ 201


>gi|70997385|ref|XP_753441.1| rRNA methyltransferase Spb1 [Aspergillus fumigatus Af293]
 gi|73621934|sp|Q4WVH3|SPB1_ASPFU RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|66851077|gb|EAL91403.1| rRNA methyltransferase Spb1, putative [Aspergillus fumigatus Af293]
 gi|159126832|gb|EDP51948.1| rRNA methyltransferase Spb1, putative [Aspergillus fumigatus A1163]
          Length = 795

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
                    + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECM---PTQSIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|326472373|gb|EGD96382.1| rRNA methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 812

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA 
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAT 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + +V +D+  ++PI  V  F+ D         IRQ       D VL D A 
Sbjct: 64  ECMPSQ---SLIVGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQLFTTVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCLGFK 201


>gi|24647580|ref|NP_650590.1| CG5220 [Drosophila melanogaster]
 gi|9910870|sp|Q9VEP1|RMJ1A_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG5220;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7300216|gb|AAF55380.1| CG5220 [Drosophila melanogaster]
 gi|25012244|gb|AAN71236.1| LD21957p [Drosophila melanogaster]
 gi|220943874|gb|ACL84480.1| CG5220-PA [synthetic construct]
 gi|220953752|gb|ACL89419.1| CG5220-PA [synthetic construct]
          Length = 302

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 91  SNANNT------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSD 142
                       +++A+D+  M PI G+   + D     + E I    GG     LV+ D
Sbjct: 65  DTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K
Sbjct: 125 GAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
               KP +SR  S+E F++   F
Sbjct: 185 FDIYKPPSSRPSSIEAFVVCSDF 207


>gi|194899901|ref|XP_001979496.1| GG23538 [Drosophila erecta]
 gi|190651199|gb|EDV48454.1| GG23538 [Drosophila erecta]
          Length = 250

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K+ IL+    ++D G++PG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGGTVLDCGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    +   +++A+ 
Sbjct: 92  SWTQVAVERTNANGKQERAAQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQMRLKEALQ 151

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M       +VK +  G    +
Sbjct: 152 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  +KP ASR +S E FLLA+ F+
Sbjct: 212 ERDMLRFYEKVKRIKPRASRGDSAEHFLLARNFK 245


>gi|209883044|ref|XP_002142954.1| rRNA (uridine-2'-O-)-methyltransferase 3 [Cryptosporidium muris
           RN66]
 gi|209558560|gb|EEA08605.1| rRNA (uridine-2'-O-)-methyltransferase 3, putative [Cryptosporidium
           muris RN66]
          Length = 920

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KL+Q+ +K+ I ++ + +VDL ++PG W QVA R  G    +
Sbjct: 13  DRYYHLAKEQGYRARSAFKLIQLAQKYDIFKNCQVLVDLCAAPGGWLQVAKRHMGV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
           ++++ +D++ ++ I GV  FK D       + I     G + D+VL D A         D
Sbjct: 70  SKIIGVDLVSIKSIPGVTTFKCDITTEQCKKLILNNLEGLSVDVVLHDGAPNVGTSWNRD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +T  A ++L  GG F+ K F+    N ++ +L + F+ V   KP +SR  
Sbjct: 130 AYIQNELVVHSTKLACDILRPGGIFITKIFRSSDYNSLIWVLNQLFKTVRATKPQSSRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+FL+   ++
Sbjct: 190 SAEIFLVCLDYK 201


>gi|328697206|ref|XP_001950144.2| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
           [Acyrthosiphon pisum]
          Length = 234

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 11/233 (4%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
           MVK     S   L    K  +   SS++WL R   DPYV++A+++ +R RSA+KLLQ+++
Sbjct: 1   MVKITFCKSWSFL----KTFTRNHSSKEWLLRQKTDPYVEKAKIKSYRCRSAFKLLQMDD 56

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF 115
           +  IL+    ++D+G++PGSWSQVAA    SNA         ++ ID+  M PI GV   
Sbjct: 57  RFSILKPGLCVIDIGAAPGSWSQVAASRINSNATNSEIPTGLLIGIDLQQMYPIEGVTLL 116

Query: 116 -KFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
              DF    +W+ I++ +   P D+VLSDMA    G + +DH   + L  +   FA+   
Sbjct: 117 GNSDFTSPKTWQKIKELLNNRPIDVVLSDMAPNASGVKHLDHDLIIKLAYSVVKFAVLNS 176

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           N+G   L+K   G     I   L K +  V  VKP ASR++S E +LLA+GF+
Sbjct: 177 NVGATCLIKILDGNQNAKIENTLIKFYSNVKFVKPEASRSDSAEKYLLARGFK 229


>gi|73544523|ref|XP_848156.1| FtsJ cell division protein [Leishmania major strain Friedlin]
          Length = 924

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKGQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMAIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKANGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|302309076|ref|NP_986282.2| AFR734Cp [Ashbya gossypii ATCC 10895]
 gi|299790933|gb|AAS54106.2| AFR734Cp [Ashbya gossypii ATCC 10895]
          Length = 830

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            R+ + +S+  L     D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++
Sbjct: 2   GRTQKKNSKGRL-----DRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+ +   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASNLCPVN---SLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A     +   D      L   A   A+E L +GG F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F KV   KP ASR  S E+F++ KGF+
Sbjct: 174 QQLFDKVEATKPPASRNVSAEIFVVCKGFK 203


>gi|322493017|emb|CBZ28302.1| putative FtsJ cell division protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 925

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMAIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D  D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML  GG F+ K F+    +++L + K+ F+KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKAGGWFVTKVFRSPDFHNLLWVFKQLFEKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|195500126|ref|XP_002097241.1| GE24604 [Drosophila yakuba]
 gi|194183342|gb|EDW96953.1| GE24604 [Drosophila yakuba]
          Length = 302

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLL ++E + IL   +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSD 142
               T       +++A+D+  M PI G+   + D     + E I    GG     LV+ D
Sbjct: 65  DACETDDEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCD 124

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K
Sbjct: 125 GAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKK 184

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
               KP +SR  S+E F++   F
Sbjct: 185 FDIYKPPSSRPSSIEAFVVCSDF 207


>gi|254584860|ref|XP_002497998.1| ZYRO0F18304p [Zygosaccharomyces rouxii]
 gi|186928984|emb|CAQ43309.1| AdoMet-dependent rRNA methyltransferase SPB1 [Zygosaccharomyces
           rouxii]
 gi|238940891|emb|CAR29065.1| ZYRO0F18304p [Zygosaccharomyces rouxii]
          Length = 839

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK    L+ ++ ++DL ++
Sbjct: 2   GKTDKKNSKGRL-----DKYYHLAKEKGYRARSSFKVIQINEKFGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ M P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASKLCPVN---SLILGVDIVPMRPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L + G F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFSQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLMWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F+KV   KP ASR  S E+F++ +GF+
Sbjct: 174 QQLFEKVEATKPPASRNVSAEIFVVCRGFK 203


>gi|39946040|ref|XP_362557.1| hypothetical protein MGG_08140 [Magnaporthe oryzae 70-15]
 gi|73621941|sp|Q52C47|SPB1_MAGO7 RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|145019391|gb|EDK03619.1| hypothetical protein MGG_08140 [Magnaporthe oryzae 70-15]
          Length = 884

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
            +      ++ +V +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  EVM---PVSSLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   A   A E L  GG F+ K F+    N +L +  + F+KV  
Sbjct: 121 NVGTAWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|195392525|ref|XP_002054908.1| GJ22540 [Drosophila virilis]
 gi|194152994|gb|EDW68428.1| GJ22540 [Drosophila virilis]
          Length = 316

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D + + A+ +GWRARSA+KLLQ +E   +L+   R VDL ++PG WSQV ++   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQADETFNLLEGVTRAVDLCAAPGGWSQVLSKRLY 64

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMA 144
              T       +++A+D+  M PI GV   + D    ++ E I +   G    LV+SD A
Sbjct: 65  EPRTPEEREQVKIIAVDMQGMAPIDGVTQLREDITKEETAEAIIKFFDGKKAQLVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G    D      L  +A   +  +L  GG F+ K ++   T+D+   L++ F+ V 
Sbjct: 125 PDVTGMHDWDAYMQAQLLLSALSISTYILEEGGSFMGKVYRAANTSDVYLQLQRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++ + F
Sbjct: 185 IFKPSASRNSSIEAFVVCRQF 205


>gi|256809981|ref|YP_003127350.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           fervens AG86]
 gi|256793181|gb|ACV23850.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           fervens AG86]
          Length = 246

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 116/204 (56%), Gaps = 8/204 (3%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +   D Y + A+   +R+R+++KL+Q+NEK  +++  R ++DLG +PG W QVA 
Sbjct: 6   KRWVLQRKRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGRIVLDLGCAPGGWMQVAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAI---GGNPDLVLS 141
            I G       V+ ID+  ++P     V+  K DF   ++   IR+ I       D+V+S
Sbjct: 66  EIVGDKGF---VIGIDLQPVKPFEYDNVRAIKGDFTLEENLNKIRELIPNEEKKVDVVIS 122

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D +    G+  +DH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F+
Sbjct: 123 DASPNISGYWDVDHARSIDLVTTALQIATEMLKERGNFVAKVFYGNMIDDYVKLVKKYFE 182

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           KV   KP ASR ES E++++AK +
Sbjct: 183 KVYITKPQASRKESAEVYVIAKRY 206


>gi|330916102|ref|XP_003297295.1| hypothetical protein PTT_07642 [Pyrenophora teres f. teres 0-1]
 gi|311330112|gb|EFQ94603.1| hypothetical protein PTT_07642 [Pyrenophora teres f. teres 0-1]
          Length = 835

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAS 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
            +  +   ++ +V +D+  ++PI     F+ D         +RQ +     D VL D A 
Sbjct: 64  EVMPA---HSLIVGVDLAPIKPIPRCITFQSDITTDKCRATLRQHLKHLKCDTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDAFTQAELVLQSMKLATEFLAEGGTFVTKIFRSKDYNSLLWVFNQLFAKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|326933959|ref|XP_003213065.1| PREDICTED: putative rRNA methyltransferase 3-like [Meleagris
           gallopavo]
          Length = 811

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 11/211 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S  G SR        D +   A+  G+R+RSA+KLLQ+N K Q LQ  R ++DL +
Sbjct: 1   MGRKSKVGKSRR-------DKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVA++       ++ V+ +D++ ++PI  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVASKFM---PVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D     +L   A   A E L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGSSWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++ F KV   KP ASR ES E+F++ +G++
Sbjct: 171 FQQFFHKVQATKPQASRNESAEIFVVCQGYQ 201


>gi|320593636|gb|EFX06045.1| rRNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 858

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               +N+    +V +D+  ++ I  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ETMPANSI---IVGVDLSPIKSIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   A   A + L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDSFNQAELALQAMKLATDFLIEGGTFVTKVFRSKDYNSLLWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|195498039|ref|XP_002096355.1| GE25629 [Drosophila yakuba]
 gi|194182456|gb|EDW96067.1| GE25629 [Drosophila yakuba]
          Length = 250

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL+    ++D G++PG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYEILRPGGTVLDCGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + + +A+ 
Sbjct: 92  SWTQVAVERTNANGKQKRASQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLNEALQ 151

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M       +VK +  G    +
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVVRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|195482827|ref|XP_002086815.1| GE11211 [Drosophila yakuba]
 gi|194186605|gb|EDX00217.1| GE11211 [Drosophila yakuba]
          Length = 250

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 7/214 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV++A++  +R RSA+KLL+I++K++IL+    ++D G++PG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYEILRPGGTVLDCGAAPG 91

Query: 80  SWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIG 133
           SW+QVA   T +N    R     V +ID+L    + G   F   DF    + + + +A+ 
Sbjct: 92  SWTQVAVERTNANGKQKRASQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLNEALQ 151

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               + VLSDMA    G R +D     +LC     FAL M       +VK +  G    +
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVVRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + + ++KV  VKP ASR +S E FL+A+ F+
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFK 245


>gi|259089269|ref|NP_001158672.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
 gi|225705722|gb|ACO08707.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
          Length = 244

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 117/215 (54%), Gaps = 7/215 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    + + W+ R +NDP+V+ A +  +R RSA+KLL+I++K+++L+    ++D G++PG
Sbjct: 26  KGKSTADQRWIVRQLNDPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFNVIDCGAAPG 85

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI- 132
           +WSQ+A     S           VV ID+L + P+ G  F    D  D  +   + + + 
Sbjct: 86  AWSQIAVHRVNSTGANGEFPRGTVVGIDLLRIAPLDGAHFLSNHDITDPVTHAKLLELLP 145

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G    +++SDMA    G +++DH + +++  +    A ++L  GG  + K + G   +  
Sbjct: 146 GAQAHVIMSDMAPNASGFKEMDHEKLITMSLSLIDLAAKVLQTGGSLICKYWDGALAHQP 205

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              L   F+ V  VKP ASR ES E+F LA+ +R+
Sbjct: 206 QQKLSAVFRDVRTVKPKASRKESSELFFLARSYRE 240


>gi|150401023|ref|YP_001324789.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus aeolicus
           Nankai-3]
 gi|189040311|sp|A6UUK5|RLME_META3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150013726|gb|ABR56177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus aeolicus
           Nankai-3]
          Length = 269

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +  ND Y + A+   +R+R++YKLLQ+NEK +I+     +VDLG +PG W Q + 
Sbjct: 6   KRWVMQRKNDFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASY 65

Query: 87  RITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            + G +     V+ +D+  ++P+    +   + D    ++   I   +    D+V+ D +
Sbjct: 66  DLVGEDGF---VIGVDLQKVKPLREENIVAIQGDMTKKETINKIIDLMPSKADVVICDAS 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G  ++DH R++ L   A      +L   G+F+VK FQG   +  + LL K+F+KV 
Sbjct: 123 PNISGVWEVDHSRSIELSLMALIATTHLLRKNGNFVVKVFQGSLFDQYVQLLTKYFKKVQ 182

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR+ S E++++ K F
Sbjct: 183 TTKPKASRSVSAEVYVIGKKF 203


>gi|156847842|ref|XP_001646804.1| hypothetical protein Kpol_2002p16 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117485|gb|EDO18946.1| hypothetical protein Kpol_2002p16 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 844

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL ++
Sbjct: 2   GKTQKKNSKGRL-----DKYYYLAKEKGYRARSSFKVIQINEKYGHFLEKSKVVIDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA+++   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVASKLCPVN---SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L +GG F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F KV   KP ASR  S E+F++ K F+
Sbjct: 174 QQLFDKVEATKPPASRNVSAEIFVVCKNFK 203


>gi|328784537|ref|XP_003250462.1| PREDICTED: putative rRNA methyltransferase 3-like isoform 1 [Apis
           mellifera]
          Length = 844

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D + Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYQLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
            +   ++ V+ +D+  ++PI G      D         I R+      D+VL D A    
Sbjct: 65  -NMPVSSIVIGVDLFPIKPIPGCISLIEDITTDKCRVSITRELKTWKADVVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  + + L  +A   A   L  GG F+ K F+    + ++ +LK+ F+KV   KP
Sbjct: 124 KNWLHDAYQQIVLTLSALKMATHFLRSGGWFITKVFRSKDYHPLIWVLKQLFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRTESAEIFVVCQYY 200


>gi|315044531|ref|XP_003171641.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma gypseum
           CBS 118893]
 gi|311343984|gb|EFR03187.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma gypseum
           CBS 118893]
          Length = 812

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + +V +D+  ++ I  V  F+ D         IRQ       D VL D A 
Sbjct: 64  ECMPS---QSLIVGVDLSPIKAIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCLGFK 201


>gi|189207701|ref|XP_001940184.1| AdoMet-dependent rRNA methyltransferase spb-1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976277|gb|EDU42903.1| AdoMet-dependent rRNA methyltransferase spb-1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 835

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAS 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
            +  +   ++ +V +D+  ++PI     F+ D         +RQ +     D VL D A 
Sbjct: 64  EVMPA---HSLIVGVDLAPIKPIPRCITFQSDITTDKCRATLRQHLKHLKCDTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDAFTQAELVLQSMKLATEFLAEGGTFVTKIFRSKDYNSLLWVFNQLFAKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|110760837|ref|XP_391900.3| PREDICTED: putative rRNA methyltransferase 3-like isoform 2 [Apis
           mellifera]
          Length = 817

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D + Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYQLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
            +   ++ V+ +D+  ++PI G      D         I R+      D+VL D A    
Sbjct: 65  -NMPVSSIVIGVDLFPIKPIPGCISLIEDITTDKCRVSITRELKTWKADVVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  + + L  +A   A   L  GG F+ K F+    + ++ +LK+ F+KV   KP
Sbjct: 124 KNWLHDAYQQIVLTLSALKMATHFLRSGGWFITKVFRSKDYHPLIWVLKQLFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRTESAEIFVVCQYY 200


>gi|119478916|ref|XP_001259487.1| rRNA methyltransferase Spb1, putative [Neosartorya fischeri NRRL
           181]
 gi|119407641|gb|EAW17590.1| rRNA methyltransferase Spb1, putative [Neosartorya fischeri NRRL
           181]
          Length = 794

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
                    + ++ +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECM---PTQSIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|255954021|ref|XP_002567763.1| Pc21g07220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589474|emb|CAP95619.1| Pc21g07220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 838

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ +R  +DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNQKYGFLEKSRVCIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
               S    + ++ +D+  ++PI     F+ D         IR  I     D+VL D A 
Sbjct: 64  EYMPS---QSLIIGVDLSPIKPIPRAITFQSDITTDKCRATIRSHIKHWKADVVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A + L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGSAWVQDAFSQAELVLESLRLATDFLGEGGTFVTKVFRSKDYNPLLWVFKQLFNSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|169614552|ref|XP_001800692.1| hypothetical protein SNOG_10422 [Phaeosphaeria nodorum SN15]
 gi|111060696|gb|EAT81816.1| hypothetical protein SNOG_10422 [Phaeosphaeria nodorum SN15]
          Length = 836

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAS 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
            +  +    + +V +D+  ++PI     F+ D         +RQ +     D VL D A 
Sbjct: 64  EVMPA---QSLIVGVDLAPIKPIPRCITFQSDITTDKCRATLRQHLKHFKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDAFTQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNSLLWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|71029650|ref|XP_764468.1| rRNA methyltransferase [Theileria parva strain Muguga]
 gi|68351422|gb|EAN32185.1| rRNA methyltransferase, putative [Theileria parva]
          Length = 924

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 11/211 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +K ++  G +R        D Y   A+  G+R+RSA+K++Q+ +K  I Q+   +VDL +
Sbjct: 1   MKTKTKTGKNRL-------DKYYHLAKEHGYRSRSAFKIIQLAKKFNIFQNCNVLVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGN 135
           +PG W QVA+     ++    ++ +D++ ++PI GV  F+ D         I  Q  G +
Sbjct: 54  APGGWLQVASNQLPVSST---IIGVDLVPIKPIKGVITFQADIRTPKCHSLITNQLNGLS 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL D +     +  +D      L   A   A  +L  GG F+ K F+    N ++ +
Sbjct: 111 VDVVLHDGSPNMGCNWNLDAFNQNVLVLTAAKLACSLLRKGGIFVTKVFRSSDYNSLVWM 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F++V   KP +SR  S E+F +  GF+
Sbjct: 171 LGNCFERVKVTKPQSSRNVSAEIFAVCIGFK 201


>gi|328770294|gb|EGF80336.1| hypothetical protein BATDEDRAFT_11420 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 221

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 12/213 (5%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           SS  W NR  +DP+V+       R+RSA+KL ++  K+  ++  + ++DLG++PG W+QV
Sbjct: 3   SSGQWFNRQASDPFVKNRIKWNLRSRSAFKLKELQSKYNFMKPGQVVLDLGAAPGGWTQV 62

Query: 85  AARITGSN---ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-------IGG 134
           A      +   + + RV+A+D+L +EPI G +    D  +    + I           G 
Sbjct: 63  ALDAVWPDRAQSMDGRVIAVDLLPIEPIDGAEILLGDVHEDAVLQQIYTLAAYPYQPEGP 122

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE--MLNIGGDFLVKTFQGGTTNDI 192
             D+VLSDMA+   GHR  D  R  +LCE A   A    +L  GG+FL K  +G    ++
Sbjct: 123 VVDVVLSDMAHSFTGHRSTDAARVQNLCEFALSVASHPWLLKPGGNFLCKYLRGDGDQEL 182

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             L +  FQ+VI  KP ASR  S E + L  GF
Sbjct: 183 KKLCQSRFQQVIVTKPKASRQGSAEAYFLCLGF 215


>gi|281211427|gb|EFA85591.1| rRNA methyltransferase [Polysphondylium pallidum PN500]
          Length = 830

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
              G  +  L +   D +   A+ +G+R+R+A+KL+Q+N+K+  L S +  +DL ++PG 
Sbjct: 9   KRMGQKKKKLAKGRLDKFYYLAKEQGYRSRAAFKLIQLNKKYNFLGSAKACLDLCAAPGG 68

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLV 139
           W QVA++        + +V +D+  + PI      + D         I++++     D+ 
Sbjct: 69  WMQVASKYM---PVQSLIVGVDLDPIRPIKNCIGLQEDITTQKCRTEIKKSLKTWKVDIC 125

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           L D A         D  +   L   A   A E L  GG F+ K F+G   N +L +  + 
Sbjct: 126 LHDGAPNMGTSWIQDAYQQAELTLHALKLATEFLVAGGWFVTKVFRGPDYNALLWVFHQL 185

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F+KV   KP ASR  S E+F++ +GF
Sbjct: 186 FKKVDSTKPQASRNASAEIFVVCQGF 211


>gi|90082607|dbj|BAE90485.1| unnamed protein product [Macaca fascicularis]
          Length = 540

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLDDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|146413993|ref|XP_001482967.1| hypothetical protein PGUG_04922 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 256

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
            G+S    L  +++++S   SS  WL R  +DP+ + A+ + +R+R+AYKL++++ K  +
Sbjct: 33  SGTSKHCQLNVQIRSKS-SVSSERWLRRQKDDPHTKEAKKQHYRSRAAYKLIELDHKFLL 91

Query: 65  LQSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            + N  RIVDLG +PG+W+QVA +         +++ +DI+   P  G +F   D     
Sbjct: 92  FKRNTLRIVDLGFAPGAWTQVAMQRMAQLGQKPKILGVDIIPSTPPEGAQFLHGDIFSRK 151

Query: 124 SWEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + + IR        DLV+SDM   T+G +  DHL +M LCE A   A   L   G  ++K
Sbjct: 152 THQEIRDNFPNNEVDLVMSDMMANTLGIKDNDHLASMELCEGALMLAASTLKTNGALVMK 211

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            + G     +    +K F+KV  +KP A R E  EM+ +  G
Sbjct: 212 FYTGREERQLEEKCRKMFKKVHRMKPSACRPELREMYFVCLG 253


>gi|322826933|gb|EFZ31322.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
          Length = 910

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S + +          D Y + A+ +G+RARSA+KL+Q+N K+  L   R +VDL +
Sbjct: 1   MGTKSKKKAKTRL------DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKGRVLVDLCA 54

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG W QVAA+        +++V +D++ + PI GVK F  D  D  + + I   +   P
Sbjct: 55  APGGWCQVAAKHMPVG---SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEP 111

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+ D A    G    D     +L   A   A  ML   G F+ K F+    + ++ +
Sbjct: 112 VDCVIHDGAPNVGGVWSRDLFEQNALVLHAAKMAASMLKPSGWFVTKVFRSQDFHKLMWV 171

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F KV   KP+ASR ES E+F++  GF+
Sbjct: 172 LKQLFDKVEATKPLASRMESAEIFVVCAGFK 202


>gi|289192039|ref|YP_003457980.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           sp. FS406-22]
 gi|288938489|gb|ADC69244.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
           sp. FS406-22]
          Length = 246

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 8/204 (3%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +   D Y + A+   +R+R+++KL+Q+NEK  +++  + ++DLG +PG W QVA 
Sbjct: 6   KRWILQRKKDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAI---GGNPDLVLS 141
            I G       ++ ID+  ++P     V   K DF   +S   IR+ I       D+V+S
Sbjct: 66  EIVGDKGF---IIGIDLQPVKPFEYDNVVAIKGDFTLEESLNKIRELIPNEEKKVDVVIS 122

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D +    G+  IDH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F+
Sbjct: 123 DASPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFE 182

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           KV   KP ASR ES E++++AK +
Sbjct: 183 KVYITKPQASRKESAEVYVIAKRY 206


>gi|15669566|ref|NP_248379.1| cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
 gi|3023819|sp|Q58771|RLME_METJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|1592021|gb|AAB99383.1| cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
          Length = 245

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 8/204 (3%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +   D Y + A+   +R+R+++KL+Q+NEK  +++  + ++DLG +PG W QVA 
Sbjct: 6   KRWVLQRKRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAI---GGNPDLVLS 141
            I G       V+ ID+  ++P     V   K DF   ++   IR+ I       D+V+S
Sbjct: 66  EIVGDKGF---VIGIDLQPVKPFEYDNVVAIKGDFTLEENLNKIRELIPNDEKKVDVVIS 122

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D +    G+  IDH R++ L   A   A EML   G+F+ K F G   +D + L+KK+F+
Sbjct: 123 DASPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFE 182

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
           KV   KP ASR ES E++++AK +
Sbjct: 183 KVYITKPQASRKESAEVYVIAKRY 206


>gi|154309412|ref|XP_001554040.1| hypothetical protein BC1G_07600 [Botryotinia fuckeliana B05.10]
 gi|150852424|gb|EDN27616.1| hypothetical protein BC1G_07600 [Botryotinia fuckeliana B05.10]
          Length = 807

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                   ++ +V +D+  ++PI  V  F+ D         IR        D VL D A 
Sbjct: 64  ETM---PVSSLIVGVDLSPIKPIPRVITFQSDITTEKCRATIRTHFKSWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDSFNQAELALQSLKLATEFLAPGGTFVTKVFRSKDYNSLLWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCQGFK 201


>gi|169641976|gb|AAI60685.1| LOC431876 protein [Xenopus laevis]
          Length = 852

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N K Q LQ  R +VDL +
Sbjct: 1   MGKKGKVGKSR-------KDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ ++ ID++ ++PI  V   + D    D  + +++ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIIGIDLVPIKPIPNVLTLQEDITTEDCRQAVKKHLQTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A     +   D    + L   A   A + L+ GG F+ K F+      +L +
Sbjct: 111 ADVVLNDGAPNVGANWTHDAFSQVHLSLMALRLACDCLSRGGWFITKIFRSSDYQSLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L++ F+KV   KP ASR+ES E+F++ +GF
Sbjct: 171 LQQFFKKVNSTKPQASRSESAEIFVVCQGF 200


>gi|71083352|ref|YP_266071.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762218|ref|ZP_01264183.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|83305663|sp|Q4FMX1|RLME_PELUB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71062465|gb|AAZ21468.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718020|gb|EAS84670.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 203

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 4/201 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S++W+N+   D YV+++Q++G+RARSAYKL++I+EK +I ++   ++DLG+SPGSWSQ  
Sbjct: 7   SKNWINKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYI 66

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           +R   S     R+V+ID+  ME I      K DF DL+S E I+       D+V+SDMA 
Sbjct: 67  SRTVKS----GRLVSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFKSKVDVVVSDMAV 122

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G + ID + T  L   A  F+ EML   G F+ K F G + N+I+ L KK F++V  
Sbjct: 123 NTTGIKDIDAIYTGELAMEAMNFSKEMLVKEGRFVSKIFLGSSFNEIVALGKKLFKEVKV 182

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR ES E F++ K  R
Sbjct: 183 FKPKSSRKESKESFIICKILR 203


>gi|303243749|ref|ZP_07330090.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanothermococcus
           okinawensis IH1]
 gi|302485991|gb|EFL48914.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanothermococcus
           okinawensis IH1]
          Length = 261

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +   D Y + A+   +R+R++YKLLQ+NEK  I++ N  +VDLG +PG W Q A 
Sbjct: 6   KRWVLQRKRDFYYKLAKKNKYRSRASYKLLQLNEKFNIIKENDVVVDLGCAPGGWLQAAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            I G       V    +  ++    V   K D    ++ E + + +    D V+ D +  
Sbjct: 66  DIVGEGGFVAGVDLQGVKPLK-YENVIAIKGDMTKKETIEKLMKLLPSKADAVICDASPN 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G  + DH R++ L   A   A ++L   G+F+VK FQG   ND + LLK +F+KV   
Sbjct: 125 ISGVWERDHTRSLELTTIALITATKLLKKDGNFVVKVFQGSLFNDYVALLKNYFKKVQTT 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP ASR  S E++++ K F
Sbjct: 185 KPKASRDVSAEVYVVGKKF 203


>gi|328771243|gb|EGF81283.1| hypothetical protein BATDEDRAFT_10491 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 283

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQI+E++ I +  + +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEQGWRARSAFKLLQIDEEYNIFEDVKNVVDLCAAPGSWSQVLSRRLA 64

Query: 91  SNA--NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPT 147
           S      +++VA+D+  M P+ GV   + D     + E I     G   DLV+ D A   
Sbjct: 65  STDSTKQSKIVAVDLQAMAPLPGVIQIQGDITKKSTAELITSHFDGEKADLVICDGAPDV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D      L  AA      +L  GG F+ K F+G   + +   ++  F  V   K
Sbjct: 125 TGLHDMDEYIQAQLLLAAFNITSHVLRNGGTFIAKIFRGKDISLLFAQMRLFFPLVDVAK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P  S       F++ + +
Sbjct: 185 PRKS-------FIVCRNY 195


>gi|171318232|ref|ZP_02907395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MEX-5]
 gi|171096576|gb|EDT41470.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MEX-5]
          Length = 199

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 10/197 (5%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI---------TGS 91
            AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A               
Sbjct: 1   MAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNKLAQGKKRDTQRE 60

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
              +  ++A+D+L MEPI  V F + DF + D    +   + G   DLV+SDMA    G 
Sbjct: 61  GGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLEDLLEGRAVDLVISDMAPNLSGV 120

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  R   LC+ A  FA   L   G  LVK F G   + I+   K+ F+ V   KP A
Sbjct: 121 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVVAPRKPKA 180

Query: 211 SRAESVEMFLLAKGFRK 227
           SR +S E F+L +  ++
Sbjct: 181 SRDKSSETFILGRQLKQ 197


>gi|146180987|ref|XP_001021884.2| FtsJ-like methyltransferase family protein [Tetrahymena
           thermophila]
 gi|146144344|gb|EAS01639.2| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
           SB210]
          Length = 329

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
            +   D Y ++A+ + +RARSAYKLLQI+E   I ++  R++DL ++PGSWSQV ++   
Sbjct: 70  TKDKRDIYYRKAKEDCFRARSAYKLLQIDEVFGIFENAERVIDLCAAPGSWSQVVSKKLT 129

Query: 89  -----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSD 142
                  SN  + R+++ID+ +M PI  V   + D    ++  E + +  G   +LV+ D
Sbjct: 130 EKGLFKDSNGEDVRIISIDLQEMAPIDNVVQLQGDITKKETVDEILHKFKGNKANLVIDD 189

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   ID      L  AA     E L  GG F+ K F+G     +    K  F+ 
Sbjct: 190 GAPDVTGFHDIDQYLQSQLMVAALNICNETLKKGGHFVAKIFKGTDIKFLYSQFKLFFKS 249

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V  VKP +SRA SVE FL+   +
Sbjct: 250 VYVVKPKSSRASSVENFLVCLQY 272


>gi|307176560|gb|EFN66047.1| Putative rRNA methyltransferase 3 [Camponotus floridanus]
          Length = 844

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
            +   ++ V+ +D+  ++PI G      D         I R+      D+VL+D A    
Sbjct: 65  -NMPVSSIVIGVDLFPIKPIPGCISLTEDITTDKCRVAISRELKTWKADVVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  + + L  +A   A + L  GG F+ K F+    + ++ +LK+ F+KV   KP
Sbjct: 124 KNWLHDAYQQVVLTLSAVKLATQFLRAGGWFVTKVFRSKDYHALIWVLKQLFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRNESAEIFVVCQYY 200


>gi|242763691|ref|XP_002340625.1| rRNA methyltransferase Spb1, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218723821|gb|EED23238.1| rRNA methyltransferase Spb1, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 798

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
               +    + +V +D+  ++PI  V  F+ D         +R  +     D VL D A 
Sbjct: 64  ECMPAG---SLIVGVDLAPIKPIPRVITFQSDITTDKCRSTLRSHVKHLKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFTQAELVLQSMKLATEFLREGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|71396836|ref|XP_802426.1| FtsJ cell division protein [Trypanosoma cruzi strain CL Brener]
 gi|70862921|gb|EAN80980.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
          Length = 211

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 10/211 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S + +          D Y + A+ +G+RARSA+KL+Q+N K+  L  +R +VDL +
Sbjct: 1   MGTKSKKKAKTRL------DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCA 54

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG W QVAA+        +++V +D++ + PI GVK F  D  D  + + I   +   P
Sbjct: 55  APGGWCQVAAKHMPVG---SKIVGVDLVPIAPIRGVKTFVGDITDDKTRKMIVTYLKKEP 111

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+ D A    G    D     +L   A   A  ML   G F+ K F+    + ++ +
Sbjct: 112 VDCVIHDGAPNVGGVWSRDLFEQNALVLHAAKMAASMLKPSGWFVTKVFRSQDFHKLMWV 171

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK+ F KV   KP+ASR ES E+F++  GF+
Sbjct: 172 LKQLFDKVEATKPLASRMESAEIFVVCAGFK 202


>gi|325958289|ref|YP_004289755.1| Ribosomal RNA large subunit methyltransferase E [Methanobacterium
           sp. AL-21]
 gi|325329721|gb|ADZ08783.1| Ribosomal RNA large subunit methyltransferase E [Methanobacterium
           sp. AL-21]
          Length = 204

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 118/203 (58%), Gaps = 5/203 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W +    + Y + A+ + +R+R++YKL Q+N++ +++++  ++VDLG++PG WSQ+A 
Sbjct: 3   KKWNSERKTEHYYKMAKKQNYRSRASYKLQQLNKRFKVIKAADKVVDLGAAPGGWSQIAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       VV +D+  + P+        + DF   ++ + ++  I G   +V+SD A
Sbjct: 63  EAVGEEGT---VVGVDLEWIRPLDEENFHTVRGDFTKDETLKEVKDLINGTAQVVISDAA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + ID +R+  L + A      +L  GG+F++K FQG   ++I+  +K+ F+ V 
Sbjct: 120 PKLTGIKDIDTIRSTDLADNALTVCDHVLMQGGNFVLKVFQGVEYDNIIKNIKERFKVVK 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP +SR  SVEM+++AKGFR+
Sbjct: 180 TTKPPSSRKASVEMYVVAKGFRR 202


>gi|328848748|gb|EGF97947.1| hypothetical protein MELLADRAFT_84132 [Melampsora larici-populina
           98AG31]
          Length = 294

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 9/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL----QSNRRIVDLGSSPGSWSQVAA 86
           ++   D + + ++ EG+RARSAYKL+ +++ + +     Q  + +VDL ++PGSWSQV  
Sbjct: 5   SKDQRDIFYRLSKSEGYRARSAYKLIHLDQHYHLFNNPNQPIKTVVDLCAAPGSWSQVLV 64

Query: 87  RITGSNANN----TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLS 141
              G +        ++VA+D+  M P+ GV     D   +++ + I     G   DLV+ 
Sbjct: 65  NKLGHHPELHDELPKIVAVDLQPMAPLSGVHQLMGDITQIETAQAIMSYFNGQKTDLVVC 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA    L +L  GG F+ K F+G     +L  L   F+
Sbjct: 125 DGAPDVTGLHDLDEFVQAQLLLAALNITLSLLREGGSFVAKIFKGRDVGLLLSQLDCFFE 184

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +V   KP +SR  S+E F++ + ++
Sbjct: 185 EVSTFKPKSSRDSSIESFVICRNYK 209


>gi|300709773|ref|YP_003735587.1| ribosomal RNA large subunit methyltransferase J [Halalkalicoccus
           jeotgali B3]
 gi|299123456|gb|ADJ13795.1| ribosomal RNA large subunit methyltransferase J [Halalkalicoccus
           jeotgali B3]
          Length = 251

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 5/191 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+ +G+R+R+AYKL Q++E   +L    R+VDLG++PG W QVA+   G    
Sbjct: 4   KDEYYNKAKQQGYRSRAAYKLQQLDEMEDLLSHGDRVVDLGAAPGGWLQVASERVG---- 59

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              V+ +D+  ++ + GV+  K D  D  +   I + IG   D VLSDMA    G   +D
Sbjct: 60  TGTVIGVDLQRIDSLEGVETIKGDMTDEGTRGEIIERIG-EADTVLSDMAPNMTGEYSLD 118

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R++ L   A   A E+L  GGD +VK F+G   + +   ++  F+ V    P ASR E
Sbjct: 119 QARSVHLARQAFETAREILTPGGDLVVKVFEGRDLDALRDDMEAEFEYVRTTSPAASREE 178

Query: 215 SVEMFLLAKGF 225
           S E++L+AKGF
Sbjct: 179 SSEVYLIAKGF 189


>gi|91773171|ref|YP_565863.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcoides
           burtonii DSM 6242]
 gi|121689250|sp|Q12WR3|RLME_METBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|91712186|gb|ABE52113.1| ribosomal RNA large subunit methyltransferase [Methanococcoides
           burtonii DSM 6242]
          Length = 267

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 115/195 (58%), Gaps = 6/195 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R   D Y  RA+ EG+R+R+AYKL QINEKH++++ +  IVDLG++PG W +VA +I+
Sbjct: 1   MARDRRDTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGWLEVAKKIS 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
           G      ++V +D+  ++ I GV+  K D    ++ + I + +G G  D+V+ D A    
Sbjct: 61  G-----GKIVGVDLRRIKEIEGVETIKGDITSDETIKKIIELVGEGGADVVICDAAPNLS 115

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+  +DH R++ L  +A   A ++L   G F+VK FQG    + +  +++ F       P
Sbjct: 116 GNWSLDHARSIDLTTSALECAKKILKPKGHFIVKVFQGDMFKEYMDKVRESFTYTRAFSP 175

Query: 209 VASRAESVEMFLLAK 223
            ASR ES E++++ K
Sbjct: 176 KASRPESAEIYVIGK 190


>gi|301123027|ref|XP_002909240.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
 gi|262100002|gb|EEY58054.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
          Length = 881

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 110/196 (56%), Gaps = 4/196 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            +H  D Y   A+ +G+RARSA+KL+Q+N+K+  L + +  +DL ++PG W QVAA+   
Sbjct: 5   KKHDKDKYYNLARQQGYRARSAFKLIQLNKKYDFLSTAKVCIDLCAAPGGWCQVAAKYMP 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIG 149
           +++    ++ ID+L + PI GVK F+ D   +   + I+Q +     D+VL D A     
Sbjct: 65  ASSI---ILGIDLLPIRPIRGVKTFQCDITTVRCRQIIKQEMQSWQADVVLCDGAPNVGT 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L   A   A++++  GG F+ K F+    N +L + K+ F+KV   KP+
Sbjct: 122 EYSKDAYVQNELALIALKLAVDVMGRGGTFVSKVFRSQDYNALLWVFKQLFKKVSATKPL 181

Query: 210 ASRAESVEMFLLAKGF 225
           +SR ES E+F++ + F
Sbjct: 182 SSRNESAEIFVVCEQF 197


>gi|292625927|ref|XP_002666179.1| PREDICTED: putative rRNA methyltransferase 3 isoform 1 [Danio
           rerio]
          Length = 838

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D +   A+  G+R+RS++KL+Q+N K Q LQ  R +VDL ++PG W QVA++      
Sbjct: 11  RKDKFYHLAKETGYRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQVASKFM---P 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D++ ++PI  V   + D       + +R+ +     D+VL+D A     + +
Sbjct: 68  VSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGAPNVGANWQ 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D     +L   A   A E L  GG F+ K F+      ++ + ++ F+KV   KP ASR
Sbjct: 128 HDAFSQANLTLMALKLACEFLAKGGTFITKVFRSKDYQPLMWIFQQFFKKVQATKPQASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +GF
Sbjct: 188 NESAEIFVVCQGF 200


>gi|84489178|ref|YP_447410.1| putative 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
 gi|121697907|sp|Q2NHD6|RLME_METST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|84372497|gb|ABC56767.1| putative 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
          Length = 206

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 3/202 (1%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             W  +H  + Y + A+ + +R+R++YKL Q+++K+ +L+ +  +VDLG++PG WSQV A
Sbjct: 2   SRWKAKHDKEHYYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVA 61

Query: 87  RITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G      +++++D+  ++PI        K DF   ++ + I + I G  D+VLSD A
Sbjct: 62  ETIGEEGK-GQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDGKADVVLSDAA 120

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + ID+ R   L  A       +L   G+ ++K FQG    +I+  LKK F+ V 
Sbjct: 121 PKLTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGEAYQEIIKNLKKKFRNVK 180

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S EM+++A+GFR
Sbjct: 181 TTKPNSSRKRSAEMYVIARGFR 202


>gi|212529376|ref|XP_002144845.1| rRNA methyltransferase Spb1, putative [Penicillium marneffei ATCC
           18224]
 gi|210074243|gb|EEA28330.1| rRNA methyltransferase Spb1, putative [Penicillium marneffei ATCC
           18224]
          Length = 794

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
               +    + +V +D+  ++PI  V  F+ D         +R  +     D VL D A 
Sbjct: 64  ECMPAG---SLIVGVDLAPIKPIPRVITFQSDITTDKCRSTLRSHVKHLKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFTQAELVLQSMKLATEFLREGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|222478870|ref|YP_002565107.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorubrum lacusprofundi
           ATCC 49239]
 gi|254809555|sp|B9LSX2|RLME_HALLT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|222451772|gb|ACM56037.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 269

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +++ +G+RARSAYKL QI+E+  + +    +VDLG++PG W QVAA   G +  
Sbjct: 4   KDEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEEVGESGT 63

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKI 153
              V    I D++    V+  + D  +  +  ++R+AIG    D+V+SDMA    G   +
Sbjct: 64  VVGVDLQRIDDLDD-HDVETIRGDMTEERTRHYLREAIGERGADVVISDMAPNMTGEYAL 122

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L   A   A E+L  GGDF+VK FQG   +     ++  F+ +  V P ASR 
Sbjct: 123 DHARSVHLARQAFDVAEELLAPGGDFVVKVFQGEDLDAFREDVRAEFEYLRTVSPPASRD 182

Query: 214 ESVEMFLLAKGF 225
            S E++L+AKG 
Sbjct: 183 SSSEVYLVAKGL 194


>gi|296809876|ref|XP_002845276.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma otae CBS
           113480]
 gi|238842664|gb|EEQ32326.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma otae CBS
           113480]
          Length = 804

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               S    + +V +D+  ++ I  V  F+ D         IRQ       D VL D A 
Sbjct: 64  ECMPSQ---SLIVGVDLSPIKAIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSLKLATEFLIPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCLGFK 201


>gi|85103106|ref|XP_961445.1| AdoMet-dependent rRNA methyltransferase spb1 [Neurospora crassa
           OR74A]
 gi|73621942|sp|Q9P6V8|SPB1_NEUCR RecName: Full=AdoMet-dependent rRNA methyltransferase spb-1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|16415988|emb|CAB88626.2| conserved hypothetical protein [Neurospora crassa]
 gi|28922991|gb|EAA32209.1| AdoMet-dependent rRNA methyltransferase spb1 [Neurospora crassa
           OR74A]
          Length = 831

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++  +DL ++PGSW QV A
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               +N+    ++ +D+  ++PI  V  F+ D         IR  +     D+VL D A 
Sbjct: 64  ETMPTNSI---IIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADVVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|147919157|ref|YP_687110.1| 23S rRNA methyltransferase J [uncultured methanogenic archaeon
           RC-I]
 gi|121685265|sp|Q0W1F9|RLME_UNCMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110622506|emb|CAJ37784.1| 23S rRNA methyltransferase J [uncultured methanogenic archaeon
           RC-I]
          Length = 256

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 106/191 (55%), Gaps = 5/191 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+  G+R+R+++KL  IN+KH I++    +VDLG++PG W QVA  + G    
Sbjct: 6   RDHYYNKAKQMGYRSRASFKLQFINKKHHIIKKGDTVVDLGAAPGGWLQVAKELNGG--- 62

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             +V+ +D+  +EPI GV+  K D    ++   I + +    D V+ D A    G+  +D
Sbjct: 63  -GKVIGVDLQRIEPIEGVETIKGDMTSPETQARIFEIV-DEVDTVICDAAPNLSGNWALD 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           H R++ L   A   A ++L  GG+F+VK FQG    + +  + K F      K  ASR +
Sbjct: 121 HARSIDLATVALDVATKLLKKGGNFVVKVFQGDLYENYVKEVGKRFSYATTYKSQASRQQ 180

Query: 215 SVEMFLLAKGF 225
           S E++++ KGF
Sbjct: 181 SAEIYVIGKGF 191


>gi|194894024|ref|XP_001977991.1| GG17939 [Drosophila erecta]
 gi|190649640|gb|EDV46918.1| GG17939 [Drosophila erecta]
          Length = 816

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +  
Sbjct: 11  RKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 68  VSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|322368172|ref|ZP_08042741.1| ribosomal RNA large subunit methyltransferase J [Haladaptatus
           paucihalophilus DX253]
 gi|320552188|gb|EFW93833.1| ribosomal RNA large subunit methyltransferase J [Haladaptatus
           paucihalophilus DX253]
          Length = 254

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 113/190 (59%), Gaps = 4/190 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +++ +G+R+R+AYKL Q++E   +L     +VDLG++PG W QVAA   G   
Sbjct: 3   RKDHYYNKSKQQGYRSRAAYKLKQLDESAHLLHEGETVVDLGAAPGGWLQVAAEEVGDTG 62

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               V+ +D+  ++ I GV+  + D  + ++ E +   + G+ D+VLSDMA    G   +
Sbjct: 63  T---VIGVDLQRIKDIDGVETIRGDMTEEETQEEVID-VAGSADVVLSDMAPNMTGEYSL 118

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L   A   ALE+L+ GGDF+VK FQG   +D+   ++  F+ V  + P ASR 
Sbjct: 119 DHARSVYLARQAFETALELLDSGGDFVVKVFQGPDLDDLREDMEPEFEYVRTMSPDASRD 178

Query: 214 ESVEMFLLAK 223
           ES E++L+A+
Sbjct: 179 ESSEVYLVAR 188


>gi|145254616|ref|XP_001398682.1| AdoMet-dependent rRNA methyltransferase spb1 [Aspergillus niger CBS
           513.88]
 gi|134084264|emb|CAK47295.1| unnamed protein product [Aspergillus niger]
          Length = 801

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
               + +    +V +D+  ++PI  V  F+ D         IRQ +     D VL D A 
Sbjct: 64  ECMPAQSI---IVGVDLAPIKPIPRVITFQSDITTEKCRTTIRQHLKHWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSLKLATEFLAEGGTFVTKVFRSKDYNPLLWVFKQLFASVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ + ++
Sbjct: 181 TKPPSSRNVSAEIFVVCRNYK 201


>gi|18859957|ref|NP_573099.1| CG8939 [Drosophila melanogaster]
 gi|7293173|gb|AAF48557.1| CG8939 [Drosophila melanogaster]
 gi|17862372|gb|AAL39663.1| LD23718p [Drosophila melanogaster]
 gi|220944838|gb|ACL84962.1| CG8939-PA [synthetic construct]
          Length = 817

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +  
Sbjct: 11  RKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 68  VSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|50304545|ref|XP_452227.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|73621940|sp|Q6CV12|SPB1_KLULA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49641360|emb|CAH01078.1| KLLA0C00737p [Kluyveromyces lactis]
          Length = 833

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 10/212 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLG 75
           +  ++ + +S+  L     D Y   A+ +G+RARS++K++QINEK+   L+ ++ ++DL 
Sbjct: 1   MGKKTQKKNSKGRL-----DKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLC 55

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-G 134
           ++PGSW QVA+ +   N   + ++ +DI+ M+ +  V  F+ D    D    +R  +   
Sbjct: 56  AAPGSWCQVASNLCPVN---SLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTW 112

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             D VL D A         D      L   A   A+E L +GG F+ K F+    N ++ 
Sbjct: 113 KADTVLHDGAPNVGLSWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIW 172

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + ++ F+KV   KP ASR  S E+F++ K F+
Sbjct: 173 VFQQLFEKVEATKPPASRNVSAEIFVVCKNFK 204


>gi|242009665|ref|XP_002425603.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
 gi|212509496|gb|EEB12865.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
          Length = 334

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 19/209 (9%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KLLQINE+  I ++  R+VDL      WSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQINEEFNIFENVTRVVDL------WSQVLSRKLY 58

Query: 91  SN------------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPD 137
                         +N+T +VA+D+  M P+ GV   + D   L + + I +   G    
Sbjct: 59  GKDMSKSVDSNQKLSNDTIIVAVDLQPMAPLPGVIQIQGDITKLSTAKQIIEHFSGSPAQ 118

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LV+ D A    G   ID      L  AA      +L  GG F+ K F+G     I   LK
Sbjct: 119 LVVCDGAPDVTGLHDIDEFVQSQLLLAAFNITSHILMKGGTFVAKIFRGKDITLIYSQLK 178

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+ V   KP +SR  S+E F++ + ++
Sbjct: 179 IFFKFVTVAKPRSSRNSSIEAFVVCQNYQ 207


>gi|15679761|ref|NP_276879.1| cell division protein J [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|9911011|sp|O27801|RLME_METTH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2622903|gb|AAB86239.1| cell division protein J [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 211

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 116/202 (57%), Gaps = 5/202 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W      D Y + A+ E +R+R++YKLLQ+N K+++++   R++DLG++PG WSQVA 
Sbjct: 3   KRWQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQVAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       VVA+D+  ++      F   + DF D +  + I + +GG  D+V+SD A
Sbjct: 63  DKVGEEG---LVVAVDLQRIKGFPAENFRAIRGDFTDPEVKDKIIRELGGRADVVISDAA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G R IDHLR++ L E     A  +L+  G+ L+K FQG   + ++  L+K F K+ 
Sbjct: 120 PSLSGIRDIDHLRSVDLVENVLDIAYRVLDRKGNILIKAFQGPELDRVIKELRKDFWKLK 179

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S EM+++ + F+
Sbjct: 180 TTKPASSRKASAEMYIVGRDFK 201


>gi|71987550|ref|NP_497656.2| hypothetical protein H06I04.3 [Caenorhabditis elegans]
 gi|60543537|gb|AAX22286.1| Hypothetical protein H06I04.3b [Caenorhabditis elegans]
          Length = 716

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 109/199 (54%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A    
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L  GG F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 LNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + ++K
Sbjct: 184 AASRLESAEIFVVCEVYQK 202


>gi|146182230|ref|XP_001024178.2| FtsJ-like methyltransferase family protein [Tetrahymena
           thermophila]
 gi|146143910|gb|EAS03933.2| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
           SB210]
          Length = 604

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 120/206 (58%), Gaps = 1/206 (0%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S   SS+ W+  H+ D YV++AQ + +R+R++YKL++I E+++I +  +++++LGS+PG 
Sbjct: 33  SKTKSSKMWMQEHVTDEYVKKAQKDNYRSRASYKLIEIQERYKIFKQGQKVLELGSAPGG 92

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           W+QVA   T SN     V+AID   M+P+ G  F++ D  D  +  +I +     P D+V
Sbjct: 93  WTQVAVEFTKSNEKKPTVLAIDRDFMDPVQGAVFYQGDINDKKTQVYIPEFFKLEPVDIV 152

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    DHL    L         + L IGG  ++KT  G    D+  + K +
Sbjct: 153 ISDMAPNFSGDLDQDHLLIQDLNNMTIDVCTKNLKIGGTVVMKTLNGTLEKDVFRMYKIY 212

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F++ + VKP ASRA S E++ L KG+
Sbjct: 213 FKEFLRVKPRASRARSSELYYLGKGY 238


>gi|91090288|ref|XP_971422.1| PREDICTED: similar to CG8939 CG8939-PA [Tribolium castaneum]
 gi|270013436|gb|EFA09884.1| hypothetical protein TcasGA2_TC012032 [Tribolium castaneum]
          Length = 805

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K + LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGFRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVAKQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
            +   ++ ++ ID+  ++PI G      D         +++ +     D+VL D A    
Sbjct: 65  -NMPVSSVIIGIDLFPIKPIPGCISLTEDITTEKCRVSLKKELQTWKADVVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  ++   A E L  GG F+ K F+    + ++ +LK+ F+KV   KP
Sbjct: 124 KNWLHDAYQQACLTLSSLKLASEFLKKGGWFITKVFRSKDYHSLIWVLKQFFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRNESAEIFVVCQHY 200


>gi|10954014|gb|AAG25705.1| SPB1-like protein [Saccharomyces servazzii]
          Length = 842

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 10/210 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH-QILQSNRRIVDLGSS 77
            ++ + +S+  L     D Y+  A+ +G+RARS++K++QINEK    L+ ++ +VDL ++
Sbjct: 2   GKTQKKNSKGRL-----DRYLYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVVDLCAA 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNP 136
           PGSW QVA ++   N   + ++ +DI+ M+P+  V  F+ D    D    +R  +     
Sbjct: 57  PGSWCQVATKLCPVN---SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKA 113

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D VL D A         D      L   A   A+E L + G F+ K F+    N ++ + 
Sbjct: 114 DTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVF 173

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ F KV   KP +SR  S E+F++ KGF+
Sbjct: 174 QQLFDKVEATKPPSSRNVSAEIFVVCKGFK 203


>gi|321464186|gb|EFX75196.1| hypothetical protein DAPPUDRAFT_306870 [Daphnia pulex]
          Length = 242

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           SSS        + +    SS++WL R +ND YV +A++E +RARSA+KL++I++KH+ L+
Sbjct: 13  SSSTCFKKVPDRLKGRSKSSQEWLTRQMNDEYVLKAKMENYRARSAFKLIEIDDKHKFLK 72

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNAN-----NTRVVAIDILDMEPILGVKFF-KFDFL 120
               +V+ G++PG+W+QV  +   +          + VA+D+  M PI G       DF 
Sbjct: 73  PGDVVVECGAAPGAWTQVCVKRINATGKVSSQLKGKHVAVDLQPMYPIEGAVILAPLDFT 132

Query: 121 DLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              S   I + +GG   + VLSDMA    G R +D  R + L  +   +A ++   G   
Sbjct: 133 KSLSQTRITEILGGQLANAVLSDMAPAASGIRDLDQDRILELAYSVLRYAQQISMDGATL 192

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L+K + GG    +   +  H+ +V  VKP +SR +S EMF+LA  F+K
Sbjct: 193 LIKLWAGGRIKQLENEIALHYSQVKVVKPPSSRQDSAEMFILASNFKK 240


>gi|195357054|ref|XP_002044929.1| GM11680 [Drosophila sechellia]
 gi|194124271|gb|EDW46314.1| GM11680 [Drosophila sechellia]
          Length = 817

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +    ++
Sbjct: 11  RKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQNMPVSS 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
               V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 71  I---VIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|222445937|ref|ZP_03608452.1| hypothetical protein METSMIALI_01585 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435502|gb|EEE42667.1| hypothetical protein METSMIALI_01585 [Methanobrevibacter smithii
           DSM 2375]
          Length = 217

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             W     +DPY ++A+ E +R+R++YK+ Q+++K ++++    +VDLG++PG WSQVA 
Sbjct: 3   SRWQMEKKHDPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       V+ +D+  ++P     F   + DF   +  E +   IGG   +++SD +
Sbjct: 63  EKVGEEG---LVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAKVIISDAS 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + ID LR++ L       A  +L   G+ ++K FQG    D+L  LKK +++V 
Sbjct: 120 PSLCGIKNIDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVK 179

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR +S EM+++   F
Sbjct: 180 TTKPPSSRKKSSEMYVVGLDF 200


>gi|15126717|gb|AAH12281.1| Ftsj3 protein [Mus musculus]
          Length = 838

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F +V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFHRVQATKPQASRHESAEIFVVCQGF 200


>gi|66357152|ref|XP_625754.1| Spb1p-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
 gi|46226949|gb|EAK87915.1| Spb1p-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
          Length = 1011

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KL+Q+ +K  I ++ + +VDL ++PG W QVA R  G    +
Sbjct: 13  DRYYHLAKEQGYRARSAFKLIQLAQKFNIFKNCQVLVDLCAAPGGWLQVAKRNMGV---S 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           ++++ +D++ ++ I GV  FK D       + I   + G P D+VL D A         D
Sbjct: 70  SKIIGVDLVAIKGIPGVTTFKCDITTERCRKLIFDELNGIPVDVVLHDGAPNVGTSWDKD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A E+L   G F+ K F+    N +L +L + F  V   KP +SR  
Sbjct: 130 AYIQNELVLHSAELACEILRPNGIFVTKVFRSTDYNSVLWVLSQLFNTVKATKPQSSRNV 189

Query: 215 SVEMFLLAKGFR 226
           S E+FL+  G++
Sbjct: 190 SAEIFLVCLGYK 201


>gi|148642568|ref|YP_001273081.1| cell division protein J (23S rRNA methylase), FtsJ
           [Methanobrevibacter smithii ATCC 35061]
 gi|158513776|sp|A5UKI5|RLME_METS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|148551585|gb|ABQ86713.1| cell division protein J (23S rRNA methylase), FtsJ
           [Methanobrevibacter smithii ATCC 35061]
          Length = 210

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             W     +DPY ++A+ E +R+R++YK+ Q+++K ++++    +VDLG++PG WSQVA 
Sbjct: 3   SRWQMEKKHDPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       V+ +D+  ++P     F   + DF   +  E +   IGG   +V+SD +
Sbjct: 63  EKVGEEG---LVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAKVVISDAS 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + ID LR++ L       A  +L   G+ ++K FQG    D+L  LKK +++V 
Sbjct: 120 PSLCGIKNIDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVK 179

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR +S EM+++   F
Sbjct: 180 TTKPPSSRKKSSEMYVVGLDF 200


>gi|60417326|emb|CAI51686.1| putative ribosomal RNA methyltransferase 2 [Nyctotherus ovalis]
          Length = 202

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/202 (38%), Positives = 124/202 (61%), Gaps = 1/202 (0%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            +SR W+ RH+ D +V+ ++   +R+R+A+KL+ I+ KH +++   R+V++GS+PGSW+Q
Sbjct: 1   KASRQWMRRHVRDTFVKASRQMNYRSRAAFKLIDIDSKHGLMKPGMRVVEIGSAPGSWTQ 60

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSD 142
           V  R   S + +  VVA+D+L M+P+ G  F +   L   + E I +A+GG    LV SD
Sbjct: 61  VIVRQVRSTSASPTVVAVDVLKMKPVSGAVFVEGSILARKTHEEIERALGGEKAGLVCSD 120

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A   +G    D   T+ L  A    A++ L  GG+FL+K  QG    ++   +K+HF  
Sbjct: 121 AAPEFVGEGDADQEATIQLNYAVLNSAVKYLKNGGNFLMKVMQGWIEKEMKVEIKRHFDS 180

Query: 203 VIHVKPVASRAESVEMFLLAKG 224
           + +VKP ASRA+S E+++LAKG
Sbjct: 181 LSYVKPPASRADSREIYILAKG 202


>gi|194749909|ref|XP_001957378.1| GF10393 [Drosophila ananassae]
 gi|190624660|gb|EDV40184.1| GF10393 [Drosophila ananassae]
          Length = 817

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +  
Sbjct: 11  RKDKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 68  VSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQTWKADVVLHDGAPNVGRNWI 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   +   A + L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNSLKLATQFLRSGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|119901150|ref|XP_001250807.1| PREDICTED: FtsJ homolog 1 [Bos taurus]
 gi|297478416|ref|XP_002690096.1| PREDICTED: FtsJ homolog 1-like [Bos taurus]
 gi|296484247|gb|DAA26362.1| FtsJ homolog 1-like [Bos taurus]
          Length = 327

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 4/198 (2%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W ++   D Y + A+ +GWRARSA+KLLQ++E+ Q+ Q   R +DL ++PGSWSQV ++ 
Sbjct: 3   WSSKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFQGVTRAIDLCAAPGSWSQVLSQK 62

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPT 147
            G    +  VVA+D+  M P+ GV   + D   L + + I Q     P DLV+ D A   
Sbjct: 63  IGGQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEDCPTDLVVCDGAPDV 121

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G           L  AA   A+ +L  GG F+ K F+G     I   L+  F +V+  K
Sbjct: 122 TGLHV--EYMQAQLLLAALNLAMHVLKPGGCFVGKIFRGRDVTLIYSQLRVFFSRVLCAK 179

Query: 208 PVASRAESVEMFLLAKGF 225
           P +SR  S+E F + KG+
Sbjct: 180 PRSSRNSSIEAFAVCKGY 197


>gi|67515621|ref|XP_657696.1| hypothetical protein AN0092.2 [Aspergillus nidulans FGSC A4]
 gi|73621939|sp|Q5BH88|SPB1_EMENI RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|40746114|gb|EAA65270.1| hypothetical protein AN0092.2 [Aspergillus nidulans FGSC A4]
 gi|259489716|tpe|CBF90216.1| TPA: AdoMet-dependent rRNA methyltransferase spb1 (EC
           2.1.1.-)(2'-O-ribose RNA
           methyltransferase)(S-adenosyl-L-methionine-dependent
           methyltransferase)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BH88] [Aspergillus
           nidulans FGSC A4]
          Length = 806

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAY 145
               +    + +V +D+  ++PI  V  F+ D         IR  +     D VL D A 
Sbjct: 64  ECMPA---QSLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|282164555|ref|YP_003356940.1| ribosomal RNA large subunit methyltransferase J [Methanocella
           paludicola SANAE]
 gi|282156869|dbj|BAI61957.1| ribosomal RNA large subunit methyltransferase J [Methanocella
           paludicola SANAE]
          Length = 254

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+  G+R+R+A+KL  INEK  +++    +VDLG++PG W QVA  I     +
Sbjct: 6   RDFYYNKAKQMGYRSRAAFKLKFINEKFGLIKKGDAVVDLGAAPGGWLQVAKEI-----S 60

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              V+ +D+  +EP+ G    K D    ++   I + +    + V+ D A    G+  +D
Sbjct: 61  EGTVIGVDLQRIEPVEGAVTIKGDMTSPETQAKIFEKVE-KVNAVICDAAPNLSGNWALD 119

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           H R++ L + A   A ++L  GG+FLVK FQG      +  + + F +V   K  ASR +
Sbjct: 120 HARSIDLSKTALDVAAKILAPGGNFLVKVFQGDLYQGFVDEVGRRFSRVYTYKSPASRQQ 179

Query: 215 SVEMFLLAKGF 225
           S E++++ KGF
Sbjct: 180 SAEIYVIGKGF 190


>gi|198424890|ref|XP_002122891.1| PREDICTED: similar to Putative rRNA methyltransferase 3 (rRNA
           (uridine-2-O-)-methyltransferase 3) [Ciona intestinalis]
          Length = 744

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+RARSA+KLLQ+N+K   LQS++  VDL ++PG W QVA+   
Sbjct: 7   VAKARKDKYYHLAKETGYRARSAFKLLQLNKKFNFLQSSQACVDLCAAPGGWLQVASE-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
                ++ +V +D++ + P+     F+ D         +R+ +     D  L D A    
Sbjct: 65  -HMPMSSIIVGVDLVPIRPVPKCVTFQDDITKESCRTQLRRELHKWKVDCFLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D      L  AA   A E L  GG F+ K F+      ++ +  + F KV   KP
Sbjct: 124 KNWLHDAYSQSVLTLAALKLASEFLCKGGWFITKVFRSKDYQALMWIFGQLFNKVHATKP 183

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR  S E+F++ +GF+
Sbjct: 184 QASRNVSAEIFVVCQGFK 201


>gi|261349524|ref|ZP_05974941.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
           smithii DSM 2374]
 gi|288861888|gb|EFC94186.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
           smithii DSM 2374]
          Length = 207

 Score =  213 bits (544), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 111/202 (54%), Gaps = 5/202 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             W     +DPY ++A+ E +R+R++YK+ Q+++K ++++    +VDLG++PG WSQVA 
Sbjct: 3   SRWQMEKKHDPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       V+ +D+  ++P     F   + DF   +  E +   IGG   +V+SD +
Sbjct: 63  EKVGEEG---LVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAKVVISDAS 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + ID LR++ L       A  +L   G+ ++K FQG    D+L  LKK +++V 
Sbjct: 120 PSLCGIKNIDQLRSIDLTNTVIGIADNILEPKGNLVMKVFQGPEYKDMLTRLKKKYRQVK 179

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR +S EM+++   F+
Sbjct: 180 TTKPPSSRKKSSEMYVVGLDFK 201


>gi|99034839|ref|ZP_01314753.1| hypothetical protein Wendoof_01000429 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 192

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG WSQVA++   +  
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQKGAN-- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK 152
               VVA+DI  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDIKPMNAINGVEFIQCDIINE--FEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|302510170|ref|XP_003017045.1| hypothetical protein ARB_05339 [Arthroderma benhamiae CBS 112371]
 gi|291180615|gb|EFE36400.1| hypothetical protein ARB_05339 [Arthroderma benhamiae CBS 112371]
          Length = 309

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 34/230 (14%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+ ++E+  +       S RR+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------VVAIDILDMEPILGVKFFKFDFLD 121
           +R+     +  R                        +V++D+  M P+ G+   + D   
Sbjct: 65  SRVLIRGESFGRRQYELDRGGTGDVAEEVRPRRDVKIVSVDLQPMAPLEGITTLQADITH 124

Query: 122 LDSWEFIRQAIGG-----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
             +   +  A+         DLVLSD A    G   +D      L  AA   A+ +L  G
Sbjct: 125 PSTVPLLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILRPG 184

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 185 GTFVAKIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 234


>gi|123476534|ref|XP_001321439.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
 gi|121904265|gb|EAY09216.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
          Length = 738

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y   A+  G+R+R+A+KL+Q+N++   L      +DL ++PG WSQVAA+    
Sbjct: 10  KHRLDKYYHLARQVGYRSRAAFKLIQLNQQFNFLNDAHVCLDLCAAPGGWSQVAAKYMPV 69

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGH 150
            A   +++AID+  ++ I  V   + D L   + + +R+ I G   D+VL+D A      
Sbjct: 70  GA---QIIAIDLAPIKDIPRVIALQGDILLPKTHQRVRKLIQGQKADVVLNDGAPNVGAA 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D    + LC A+  F+   L  GG F+ K F+    N +L +L + F+KV+  KP A
Sbjct: 127 WVTDSSNQLELCLASVKFSTLFLRKGGSFVTKVFRSEHYNSLLWVLSQFFEKVVPTKPKA 186

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E+F++A G++
Sbjct: 187 SRDSSAELFVVALGYK 202


>gi|326475211|gb|EGD99220.1| tRNA methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 309

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 34/230 (14%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+ ++E+  +       S RR+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------VVAIDILDMEPILGVKFFKFDFLD 121
           +R+     +  R                        +V++D+  M P+ G+   + D   
Sbjct: 65  SRVLIRGESFGRRQYELDRGGAGNVAEEVRPRRDVKIVSVDLQPMAPLEGITTLQADITH 124

Query: 122 LDSWEFIRQAIGG-----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
             +   +  A+         DLVLSD A    G   +D      L  AA   A+ +L  G
Sbjct: 125 PSTVPLLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILRPG 184

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 185 GTFVAKIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 234


>gi|158291561|ref|XP_313065.3| AGAP004177-PA [Anopheles gambiae str. PEST]
 gi|157017606|gb|EAA08541.3| AGAP004177-PA [Anopheles gambiae str. PEST]
          Length = 248

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 121/213 (56%), Gaps = 7/213 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R + DPYV+RA++  +R RSA+KLL+I+ K+ +++    ++D G+SPG
Sbjct: 31  KGKSKSSQEWLTRQLRDPYVERAKMMNYRCRSAFKLLEIDSKYGLVKPGHTVIDCGASPG 90

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIG 133
           SW+Q+A + + ++          VV +D+L + PI     F   DFL  ++ + IR ++G
Sbjct: 91  SWTQIAVKQSNADGGLPGKPKGMVVGVDLLQIYPIEHAILFGNSDFLRKETQDKIRASLG 150

Query: 134 G-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               D VLSDMA    G R +D     +LC A   FA+ M       L+K +  G    +
Sbjct: 151 ERRVDCVLSDMAPNASGIRALDQENITTLCYAVLRFAILMSTPNASLLMKVWDNGDVPKL 210

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              + ++++ V  VKP ASR +S E F+LA+GF
Sbjct: 211 EKSILEYYKTVKRVKPRASRDDSAENFILARGF 243


>gi|156089279|ref|XP_001612046.1| ribosomal RNA large subunit methyltransferase J family protein
           [Babesia bovis]
 gi|154799300|gb|EDO08478.1| ribosomal RNA large subunit methyltransferase J family protein
           [Babesia bovis]
          Length = 959

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 11/211 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +K+R+  G  R        D Y   A+ +G+RARSA+K++Q+ +K  I ++   +VDL +
Sbjct: 1   MKSRTKHGKERQ-------DKYYYLAKEQGYRARSAFKIIQLAKKFNIFENCNVLVDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGN 135
           +PG W QVA++    ++    ++ +D++ + PI GV   + D         I Q + G  
Sbjct: 54  APGGWLQVASKHLPVSSI---IIGVDLVPIRPIKGVVTIQADIRTQRCRNLINQQLRGAE 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL D A     +  +D      L   A   A  +L  GG F+ K F+    N ++  
Sbjct: 111 VDVVLHDGAPNVGANWNLDAFNQNVLVIEAAKLASNVLRKGGIFVTKIFRSADYNSLIWT 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L K F +V   KP +SR  S E+F +  GFR
Sbjct: 171 LGKCFDRVKVTKPSSSRNVSAEIFAVCIGFR 201


>gi|42519983|ref|NP_965898.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81652913|sp|Q73IS9|RLME_WOLPM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|42409720|gb|AAS13832.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 192

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG WSQVA++   +  
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQKGAN-- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK 152
               VVA+DI  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDIKPMNAINGVEFIQCDIINE--FEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|322505203|emb|CAM45493.2| putative FtsJ cell division protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 927

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMPIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D +D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDIVDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLKASGWFVTKVFRSPDFHNLLWVFKQLFDKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|328856745|gb|EGG05865.1| hypothetical protein MELLADRAFT_48684 [Melampsora larici-populina
           98AG31]
          Length = 884

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+++Q L+S R  +DL ++PG W QVAA+   +N   
Sbjct: 14  DKYYRLAKEQGYRARSAFKLIQLNKRYQFLESARCCIDLCAAPGGWLQVAAKWMPAN--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + ++ +D++ ++PI  V     D        ++R  +     D+VL D A         D
Sbjct: 71  SLILGVDLVPIKPIPKVVTATEDIRTDSCRRWLRSELKDWKADVVLHDGAPNVGTAWVQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A EML  GG F+ K F+    N +L +  + F+KV   KP +SR  
Sbjct: 131 AFSQAELVLHSFKLATEMLAPGGTFVTKVFRSKDYNSLLYVFNQLFKKVESTKPPSSRNV 190

Query: 215 SVEMFLLAKGF 225
           S E+F++ + F
Sbjct: 191 SAEIFVVCQDF 201


>gi|115387475|ref|XP_001211243.1| AdoMet-dependent rRNA methyltransferase spb-1 [Aspergillus terreus
           NIH2624]
 gi|114195327|gb|EAU37027.1| AdoMet-dependent rRNA methyltransferase spb-1 [Aspergillus terreus
           NIH2624]
          Length = 806

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
               + +    ++ +D+  ++PI  V  F+ D         IR  +     D VL D A 
Sbjct: 64  ECMPAQSI---IIGVDLAPIKPIPRVISFQSDITTEKCRATIRSHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNALLWVFKQLFTSVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +GF+
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFK 201


>gi|83767093|dbj|BAE57233.1| unnamed protein product [Aspergillus oryzae]
          Length = 296

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 125/275 (45%), Gaps = 54/275 (19%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           S S+R L           SS+ W  R + D + + A  +G ++R+A+KL+QI+ K++I +
Sbjct: 11  SRSQRALAFSPFTPKRPSSSKRWQARQLKDHFTREATAQGLKSRAAFKLIQIDAKYRIFR 70

Query: 67  SNRRIVDLGSSPGSWSQV---AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           + + +VDLG +PGSWSQV   A  +T     N RV+ +DI+  +P  GV   + +FLD  
Sbjct: 71  NGQTVVDLGYAPGSWSQVRQLAINLTLRTGPNGRVLGVDIIPAQPPKGVFTIQGNFLDPS 130

Query: 124 SWEFIRQAIGGN--------------------------------------------PDLV 139
              +++  +                                                D+V
Sbjct: 131 IQAYVQNFLHNPTRDQQHRPGISPHVSLSHETSEDTKNPIHNCKEMEELCLTGKRTVDVV 190

Query: 140 LSDM-------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           LSD+          T G    DH  +M LC AA  F+ E+L  GG F+ K +QG    D+
Sbjct: 191 LSDILSDLCNRMMNTSGMSFRDHAGSMDLCRAALQFSFEVLKAGGHFVCKFYQGAEDKDL 250

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              LK+ FQKV  +KP +SR ES E + +    ++
Sbjct: 251 EKQLKRLFQKVHRLKPESSRNESKEAYFIGLARKQ 285


>gi|307199137|gb|EFN79847.1| Putative rRNA methyltransferase 3 [Harpegnathos saltator]
          Length = 853

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K++ LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGYRSRAAFKLIQLNRKYEFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
            +   ++ VV +D+  ++PI G      D         I R+      D+VL+D A    
Sbjct: 65  -NMPVSSIVVGVDLFPIKPIPGCINLTEDITTDKCRIAITRELKTWKADVVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  AA   A + L  GG F+ K F+    + ++ +LK+ F+KV   KP
Sbjct: 124 KNWLHDAYQQAVLTLAAIKLAAQFLRAGGWFVTKIFRSKDYHPLIWVLKQLFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRNESAEIFVVCQYY 200


>gi|195432683|ref|XP_002064346.1| GK19748 [Drosophila willistoni]
 gi|194160431|gb|EDW75332.1| GK19748 [Drosophila willistoni]
          Length = 824

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +    ++
Sbjct: 11  RKDKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQNMPVSS 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
               V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 71  I---VIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A     + L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 FDAYQQICLTLNALKLGTQFLRSGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|150400217|ref|YP_001323984.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus vannielii
           SB]
 gi|189040315|sp|A6USA0|RLME_METVS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150012920|gb|ABR55372.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus vannielii
           SB]
          Length = 259

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 1/199 (0%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +   DPY   A+ + +R+R+ YKL Q+NEK  I++    +VDLG +PG W Q A 
Sbjct: 6   KRWVLQRKKDPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQAAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            +TG       +    I  + P   V   K D  D ++ + I+  +   PD+++ D +  
Sbjct: 66  DMTGEEGFIVGIDLQQIKPL-PYENVIAVKGDMTDEETLKKIQDILPEKPDVIICDASPN 124

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F K    
Sbjct: 125 ISGVWDVDHTRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFYKYVELVSEYFDKAFTT 184

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP ASR ES E++++AK +
Sbjct: 185 KPRASREESAEVYVIAKHY 203


>gi|261326555|emb|CBH09516.1| FtsJ cell division protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 905

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 10/211 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S + +          D Y + A+ +G+RARSA+KL+Q+N K+  L   R +VDL +
Sbjct: 1   MGTKSKKKAKTRL------DAYYRLAKDQGFRARSAFKLVQLNRKYDFLSKCRVLVDLCA 54

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PGSW QVAA+        +++V +D++ + PI GVK F  D  +  + + I   +   P
Sbjct: 55  APGSWCQVAAKHMPVG---SKIVGVDLVPIAPIRGVKTFVGDITEEKTKKIIMTYLKREP 111

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+ D A    G    D     SL   A   A ++L  GG F+ K F+    + ++ +
Sbjct: 112 VDCVIHDGAPNVGGVWSRDLFEQNSLVLHAAKLASKLLRPGGWFVTKVFRSQDFHKLMWV 171

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F KV   KP+ASR ES E+F+   G++
Sbjct: 172 MKQLFDKVEATKPLASRMESAEIFVTCAGYK 202


>gi|154340024|ref|XP_001565969.1| FtsJ cell division protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 927

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSAYKL+Q+N K+  L  +R +VDL ++PG W QVAA+        
Sbjct: 14  DAYYRLAKDQGYRARSAYKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAQHMPIG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
           +++V +D++ + PI GVK F  D +D  + + I   +   P D V+ D A    G    D
Sbjct: 71  SKIVGVDLVPIAPIRGVKTFVGDIVDDKTRKMIVTYLKKEPVDCVIHDGAPNVGGVWSRD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                +L  A+   A  ML   G F+ K F+    +++L + K+ F KV   KP ASR E
Sbjct: 131 LFDQNALVLASAKMACSMLRASGWFVTKVFRSPDFHNLLWVFKQLFDKVEATKPQASRME 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 191 SAEIFVVCAGFK 202


>gi|225677266|ref|ZP_03788249.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590686|gb|EEH11930.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 192

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 125/193 (64%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG WSQVA++   +  
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQKDAN-- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK 152
               VVA+D+  M  I GV+F + D ++    E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDVKPMNAINGVEFIQCDIINE--LEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|304314116|ref|YP_003849263.1| 23 S ribosomal RNA methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587575|gb|ADL57950.1| predicted 23 S ribosomal RNA methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 211

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 5/202 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W      D Y + A+ E +R+R++YKLLQ+N ++++++   R++DLG++PG WSQVA 
Sbjct: 3   KRWQAERKRDHYYKSAKRENYRSRASYKLLQLNNRYRLIRKGYRVLDLGAAPGGWSQVAL 62

Query: 87  RITGSNANNTRVVAIDILDME--PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       VVA+D+  ++  P+   +    DF D    E I + +GG  D+V+SD A
Sbjct: 63  EKVGEEG---LVVAVDLQRIKGFPVENFRAIMGDFTDPAIKERIIEELGGRADVVISDAA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G R IDHLR++ L E     A  +L   G+ L+K FQG   + ++  +KK F K+ 
Sbjct: 120 PSLSGIRDIDHLRSVDLVENVLDIAYRVLERKGNILIKAFQGPELDKVIKEMKKDFWKLK 179

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SR  S EM+++ + F+
Sbjct: 180 TTKPASSRKASAEMYIVGRDFK 201


>gi|325187807|emb|CCA22351.1| ribosomal RNA large subunit methyltransferase J puta [Albugo
           laibachii Nc14]
          Length = 233

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/215 (34%), Positives = 119/215 (55%), Gaps = 6/215 (2%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +K K  + + S   W++R  NDPYV++A+ E  R+R+A+KL  +N+K  I++    ++DL
Sbjct: 18  EKEKKHTAKAS---WIHRQWNDPYVKQARRENLRSRAAFKLRDLNKKFDIIRHGDTVLDL 74

Query: 75  GSSPGSWSQVAARITGSNANNTR--VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           G++PG W+Q+AA  +    +  R  V+A+D++ M+ + G      DF D  +   I Q +
Sbjct: 75  GAAPGGWTQIAAMESCGEYDRDRRRVIAVDLVPMQIVEGASIVMGDFRDSSTRNEIGQLL 134

Query: 133 GGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   D+VLSDMA    GH   D  + + LC  A   A   L +GG+F+ K  Q     D
Sbjct: 135 EGRMVDVVLSDMAPRFTGHFLKDSQQQLRLCYNALLMAELYLKVGGNFVTKVLQSEDLED 194

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
               +K  F+ V   KP +SR+ES E+F + K +R
Sbjct: 195 FRGQMKTQFKSVKGYKPSSSRSESTELFFIGKEYR 229


>gi|288559850|ref|YP_003423336.1| ribosomal RNA large subunit methyltransferase J RrmJ
           [Methanobrevibacter ruminantium M1]
 gi|288542560|gb|ADC46444.1| ribosomal RNA large subunit methyltransferase J RrmJ
           [Methanobrevibacter ruminantium M1]
          Length = 213

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 5/203 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             W      DPY +RA+ E +R+R++YKL Q+++K++I++    +VDLG++PG WSQVA 
Sbjct: 3   SRWQVEKKKDPYYRRAKSEEYRSRASYKLKQLDKKYKIIKEGNTVVDLGAAPGGWSQVAL 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              G       VV +D+  ++P     F   + DF      + I +   G   +++SD A
Sbjct: 63  EKVGEEGI---VVGVDLNRIKPFPEKNFYGIRGDFTKEIVQDKIMELTNGKAKVLISDAA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + IDHL ++ L E     A  +L   G+ ++K FQG     +L  +K+ F+KV 
Sbjct: 120 PSLTGIKTIDHLNSVDLVETVIKIADNILETEGNMVIKAFQGPEYKRLLDEIKQDFRKVK 179

Query: 205 HVKPVASRAESVEMFLLAKGFRK 227
             KP +SR  S EM+++  G+RK
Sbjct: 180 STKPPSSRHRSKEMYIVGLGYRK 202


>gi|197097760|ref|NP_001125667.1| putative rRNA methyltransferase 3 [Pongo abelii]
 gi|73621845|sp|Q5RAS1|RRMJ3_PONAB RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|55728800|emb|CAH91139.1| hypothetical protein [Pongo abelii]
          Length = 841

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|195479104|ref|XP_002100764.1| GE17245 [Drosophila yakuba]
 gi|194188288|gb|EDX01872.1| GE17245 [Drosophila yakuba]
          Length = 819

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +  
Sbjct: 11  RKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 68  VSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A   +   L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLSTLFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|332243108|ref|XP_003270724.1| PREDICTED: putative rRNA methyltransferase 3-like [Nomascus
           leucogenys]
          Length = 840

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|290998754|ref|XP_002681945.1| rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi]
 gi|284095571|gb|EFC49201.1| rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi]
          Length = 823

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+R+R+A+KL+Q+N+K+  L + R ++DL ++PG W QVA +    N+  
Sbjct: 13  DKYYHMAKEQGYRSRAAFKLVQLNKKYDFLGTARVMLDLCAAPGGWLQVAKKFMPVNST- 71

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
             +V +D+  ++ I  V   + D     +   ++  + G   D+VL D A     +   D
Sbjct: 72  --LVGVDLCPIKAIPHVTTIQGDITTKKTMTMVKNVLRGQKCDVVLHDGAPNVGANWLKD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 LC  A   A E L   G F+ K F+      ++ +L + F KV   KP ASR  
Sbjct: 130 AFSQSELCLFALKMATEFLKPEGLFITKVFRSKDYTSLMWVLNQFFTKVEATKPKASRDA 189

Query: 215 SVEMFLLAKGFR 226
           S E+F++  G++
Sbjct: 190 SAEIFVVCFGYK 201


>gi|109116848|ref|XP_001116413.1| PREDICTED: putative rRNA methyltransferase 3-like isoform 2 [Macaca
           mulatta]
          Length = 843

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|84043710|ref|XP_951645.1| cell division protein [Trypanosoma brucei TREU927]
 gi|33348588|gb|AAQ15913.1| FtsJ cell division protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|62359748|gb|AAX80179.1| FtsJ cell division protein, putative [Trypanosoma brucei]
          Length = 905

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 10/211 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S + +          D Y + A+ +G+RARSA+KL+Q+N K+  L   R +VDL +
Sbjct: 1   MGTKSKKKAKTRL------DAYYRLAKDQGFRARSAFKLVQLNRKYDFLSKCRVLVDLCA 54

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PGSW QVAA+        +++V +D++ + PI GVK F  D  +  + + I   +   P
Sbjct: 55  APGSWCQVAAKHMPVG---SKIVGVDLVPIAPIRGVKTFVGDITEEKTKKIIMTYLKREP 111

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+ D A    G    D     SL   A   A ++L  GG F+ K F+    + ++ +
Sbjct: 112 VDCVIHDGAPNVGGVWSRDLFEQNSLVLHAAKLASKLLRPGGWFVTKVFRSQDFHKLMWV 171

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K+ F KV   KP+ASR ES E+F+   G++
Sbjct: 172 MKQLFDKVEATKPLASRMESAEIFVTCAGYK 202


>gi|169844171|ref|XP_001828807.1| RNA methyltransferase [Coprinopsis cinerea okayama7#130]
 gi|116510178|gb|EAU93073.1| RNA methyltransferase [Coprinopsis cinerea okayama7#130]
          Length = 882

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+K+  L+S R  +DL ++PG W QVA++    N   
Sbjct: 14  DKYYKLAKEQGYRARSAFKLIQLNKKYGFLESARCTIDLCAAPGGWLQVASKYMPPN--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR-QAIGGNPDLVLSDMAYPTIGHRKID 154
           + ++ +D++ ++PI  V  F  D        ++R +      D+VL D A         D
Sbjct: 71  SLIIGVDLVPIKPIPRVITFASDITTTQCRNYLRGEMKDWKADVVLHDGAPNVGTAWVQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A+E L  GG F+ K F+    N ++ +  + F KV   KP +SR  
Sbjct: 131 AYSQSELVLMSLKLAVEFLAKGGTFVTKVFRSVDYNSLIWVFSQLFSKVEATKPPSSRNV 190

Query: 215 SVEMFLLAKGF 225
           S E+F++ + F
Sbjct: 191 SAEIFVVCRDF 201


>gi|18028291|gb|AAL56015.1|AF327355_1 hypothetical protein SB92 [Homo sapiens]
          Length = 847

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|23331072|gb|AAH36710.1| FtsJ homolog 3 (E. coli) [Homo sapiens]
 gi|123983012|gb|ABM83247.1| FtsJ homolog 3 (E. coli) [synthetic construct]
 gi|123997695|gb|ABM86449.1| FtsJ homolog 3 (E. coli) [synthetic construct]
 gi|189054652|dbj|BAG37502.1| unnamed protein product [Homo sapiens]
 gi|307685131|dbj|BAJ20496.1| FtsJ homolog 3 [synthetic construct]
          Length = 847

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|157169535|ref|XP_001657887.1| ribosomal RNA methyltransferase [Aedes aegypti]
 gi|108883667|gb|EAT47892.1| ribosomal RNA methyltransferase [Aedes aegypti]
          Length = 852

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D + + A+  G+R+R+A+KL+Q+N +   LQ ++  +DL ++PG W QVA +   +
Sbjct: 9   KDRKDKFYKLAKETGYRSRAAFKLIQLNRRFGFLQQSQVCIDLCAAPGGWMQVAKQ---N 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
              ++ V+ ID+  ++ + G      D     +   + + +     D+VL+D A     +
Sbjct: 66  MPVSSVVIGIDLFPIKNVPGCISLVGDITSDKTKSDLAKELKTWKADVVLNDGAPNVGRN 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP A
Sbjct: 126 WLFDAYQQVCLTLSAVKLATQFLRPGGWFVTKVFRSKDYNALIWVLKQLFKKVHATKPSA 185

Query: 211 SRAESVEMFLLAKGFR 226
           SR ES E+F++ + +R
Sbjct: 186 SRNESAEIFVVCQHYR 201


>gi|195450026|ref|XP_002072331.1| GK22383 [Drosophila willistoni]
 gi|194168416|gb|EDW83317.1| GK22383 [Drosophila willistoni]
          Length = 305

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D + + A+ +GWRARSA+KLLQ  E   +L    R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIFYRLAKQQGWRARSAFKLLQAEETFHLLDGVTRAVDLCAAPGSWSQVLSKHMY 64

Query: 88  --ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
              T       +++A+D+  M PI GVK  + D     + + I +  GG    LV+SD A
Sbjct: 65  EPRTPEEREQVKIIAVDMQGMAPIDGVKQLRADITKESTAKEIIEYFGGQKAQLVISDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G    D      L  AA   A  +L  GG F+ K ++ G  + +    ++ F+ V 
Sbjct: 125 PDVTGQHDRDAYMQGQLLLAALSIATYILEEGGSFVGKVYRAGDISSVYAQFQRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 LFKPSASRNSSIEAFVVARQF 205


>gi|134282690|ref|ZP_01769393.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 305]
 gi|226196146|ref|ZP_03791731.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pakistan 9]
 gi|134245776|gb|EBA45867.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 305]
 gi|225931732|gb|EEH27734.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pakistan 9]
          Length = 199

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 10/197 (5%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG---------S 91
            AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A               
Sbjct: 1   MAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLAQGKRRDAVRE 60

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
              +  ++A+D+L MEP+  V F + DF +      + + + G   DLV+SDMA    G 
Sbjct: 61  GGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQLEEVLAGRAVDLVISDMAPNLSGV 120

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  R   +C+ A  FA   L   G  LVK F G   + I+   K  F+ V   KP A
Sbjct: 121 AVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTVAPRKPKA 180

Query: 211 SRAESVEMFLLAKGFRK 227
           SR +S E F+L +  ++
Sbjct: 181 SRDKSSETFILGRHLKQ 197


>gi|47208174|emb|CAF94129.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 229

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    + + W+ R   DPYV+ +  +  R RSA+KLL+++++  +L+    +VD G++PG
Sbjct: 17  KGKTHAEQRWMLRQRKDPYVKASHSQNLRCRSAFKLLEMDDRFHLLRPGYSVVDCGAAPG 76

Query: 80  SWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI- 132
           +WSQVA R   S           V+ ID+L++ P+ G  F    D  D  +   I + + 
Sbjct: 77  AWSQVAVRRVNSAGAEPESPIGTVIGIDLLNIPPLDGAHFLSSHDVTDPTTHAKILELLP 136

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
            G   ++LSDMA    G + +DH R +++C      A + L  GG  + K ++G     +
Sbjct: 137 SGQAHVILSDMAPNASGFKDMDHERLVTMCFCLLDLAEKTLRPGGSLVCKYWEGALAQKL 196

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              L   F  V  +KP ASR +S E +  A+ +
Sbjct: 197 QDKLSSVFGSVRTLKPSASRKDSAEKYFFARMY 229


>gi|325189292|emb|CCA23812.1| rRNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 874

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 4/196 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            +H  D Y   A+ +G+RARSA+KL+Q+N+K+  L + +  +DL ++PG W QVAA+   
Sbjct: 5   KKHDKDKYYLLARQQGYRARSAFKLIQLNKKYDFLSTAKVCIDLCAAPGGWCQVAAKYM- 63

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIG 149
               ++ ++ ID+L + PI GVK F+ D       + IRQ +     D+VL D A     
Sbjct: 64  --PTSSIIIGIDLLPIRPIRGVKTFQCDITTAKCRQIIRQEMQNWQADVVLCDGAPNVGA 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D      L   A   A +++  G  F+ K F+    N +L + ++ F+KV   KP+
Sbjct: 122 EYSKDAYVQNELSLVALKLAADVMGRGATFVSKVFRSQDYNALLWVFRQLFKKVSATKPL 181

Query: 210 ASRAESVEMFLLAKGF 225
           +SR ES E+F++ + F
Sbjct: 182 SSRNESAEIFVVCEHF 197


>gi|288932082|ref|YP_003436142.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
           10642]
 gi|288894330|gb|ADC65867.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
           10642]
          Length = 197

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ EG+R+R+AYKL QIN K +I++    ++DLG+SPG WSQVA  +   
Sbjct: 2   KDRQDYYYWKAKKEGYRSRAAYKLKQINAKFEIIKKGYHVLDLGASPGGWSQVAVELGAD 61

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
                 VVA+D+  M+PI GV F K D    ++ E IR+ I    D+VL D +    G  
Sbjct: 62  ------VVAVDLNPMKPIEGVVFIKGDITKEETKEEIRK-IRDKFDVVLCDASPKITGKW 114

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH  +M L +AA   A E L  GG+F+VK FQG    +++   KK+F+      P AS
Sbjct: 115 DLDHFLSMELAKAAFDIAKEFLKPGGNFVVKLFQGAELEEVVREFKKYFRFKKLHAPPAS 174

Query: 212 RAESVEMFLLAKGF 225
           R  S E++ + KGF
Sbjct: 175 RKRSAEIYFIGKGF 188


>gi|242014003|ref|XP_002427688.1| cell division protein ftsj, putative [Pediculus humanus corporis]
 gi|212512118|gb|EEB14950.1| cell division protein ftsj, putative [Pediculus humanus corporis]
          Length = 228

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           V  R    +S +WL RH ND YV++A+ E +R RSA+KLL+IN+K+ +++    ++D+G+
Sbjct: 9   VGRRCKSFNSTEWLKRHNNDIYVEKAKKENYRCRSAFKLLEINDKYNLVKPGDVVLDVGA 68

Query: 77  SPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQ 130
           SPGSWSQV A  T SN    +     V+AIDI  + PI GV      DF +  S E I+ 
Sbjct: 69  SPGSWSQVLASKTNSNGKIDKSPKGTVIAIDISPIFPIEGVTILSNLDFTNESSQEKIKG 128

Query: 131 AI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
              G   D + SDMA  + G + +D    + L  +  FF++  L  GG  L+K + G   
Sbjct: 129 ITNGEKFDFIFSDMAPKSTGVKSLDQENIIKLLYSVLFFSVNNLKGGGGILLKIWDGQHE 188

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++  +KK F  +  +KP AS   S E +LL + F+
Sbjct: 189 -RLVNDIKKFFNLLHFIKPKASYKSSSESYLLGREFK 224


>gi|170574558|ref|XP_001892866.1| rRNA methyltransferase [Brugia malayi]
 gi|158601360|gb|EDP38288.1| rRNA methyltransferase, putative [Brugia malayi]
          Length = 789

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y   A+  G+R+R+A+KLLQ+N++ + LQ +R +VDL ++PG W QVA +  
Sbjct: 7   IGKQRRDKYYHLAKEAGYRSRAAFKLLQLNKRFEFLQKSRAVVDLCAAPGGWLQVAIQNM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
             ++     + +D++ ++PI      + D     + + +R+ + G   D VL D A    
Sbjct: 67  PVSSIC---IGVDLVPIKPINKCVTLQGDITTEKTRQMVRKELHGWEADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L   G F+ K F+      ++ + +K F++V   KP
Sbjct: 124 RNWVQDAFQQNCLTLSALRLATQILTKNGIFVTKIFRSSDYCHLISVFEKLFKQVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + + K
Sbjct: 184 AASRLESAEIFVVCEKYLK 202


>gi|268571471|ref|XP_002641056.1| Hypothetical protein CBG22467 [Caenorhabditis briggsae]
          Length = 827

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 109/199 (54%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A    
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L  GG F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 LNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + ++K
Sbjct: 184 AASRLESAEIFVVCEVYQK 202


>gi|332848815|ref|XP_003315725.1| PREDICTED: putative rRNA methyltransferase 3 isoform 1 [Pan
           troglodytes]
          Length = 847

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|71987561|ref|NP_001022635.1| hypothetical protein H06I04.3 [Caenorhabditis elegans]
 gi|60543538|gb|AAX22287.1| Hypothetical protein H06I04.3c [Caenorhabditis elegans]
          Length = 786

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 109/199 (54%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A    
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L  GG F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 LNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + ++K
Sbjct: 184 AASRLESAEIFVVCEVYQK 202


>gi|302416843|ref|XP_003006253.1| AdoMet-dependent rRNA methyltransferase SPB1 [Verticillium
           albo-atrum VaMs.102]
 gi|261355669|gb|EEY18097.1| AdoMet-dependent rRNA methyltransferase SPB1 [Verticillium
           albo-atrum VaMs.102]
          Length = 718

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++PGSW QVAA
Sbjct: 4   QKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLIDLCAAPGSWCQVAA 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                N   + +V +D+  ++ I     F+ D         +RQ +     D VL D A 
Sbjct: 64  ETMPVN---SLIVGVDLAPIKAIPKCITFQSDITTDKCRATLRQHLKTWKADTVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L +  + F KV  
Sbjct: 121 NVGTAWNQDSFNQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFNQLFTKVEA 180

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++ +G++
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYK 201


>gi|195398799|ref|XP_002058008.1| GJ15847 [Drosophila virilis]
 gi|194150432|gb|EDW66116.1| GJ15847 [Drosophila virilis]
          Length = 831

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +  
Sbjct: 11  RKDKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQ---NMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 68  VSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKVDVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A       L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLGTHFLRGGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|309355312|emb|CAP39049.2| hypothetical protein CBG_22467 [Caenorhabditis briggsae AF16]
          Length = 856

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 109/199 (54%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A    
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L  GG F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 LNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + ++K
Sbjct: 184 AASRLESAEIFVVCEVYQK 202


>gi|194097365|ref|NP_060117.3| putative rRNA methyltransferase 3 [Homo sapiens]
 gi|296452883|sp|Q8IY81|RRMJ3_HUMAN RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|119614679|gb|EAW94273.1| FtsJ homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
 gi|119614680|gb|EAW94274.1| FtsJ homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
 gi|119614681|gb|EAW94275.1| FtsJ homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
          Length = 847

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|296476235|gb|DAA18350.1| putative rRNA methyltransferase 3 [Bos taurus]
          Length = 809

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S  G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKSKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWAHDAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|47225726|emb|CAG08069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 842

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D +   A+  G+R+RS++KL+Q+N K Q LQ  R +VDL ++PG W QVA++      
Sbjct: 11  RRDKFYHLAKETGYRSRSSFKLIQLNRKFQFLQKARALVDLCAAPGGWLQVASKFM---P 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ ++ +D++ ++PI  V   + D       + +R+ +     D+VL+D A     + +
Sbjct: 68  VSSLIIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGAPNVGANWQ 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      L   A   A E L  GG F+ K F+      ++ + ++ F KV   KP ASR
Sbjct: 128 HDAFSQAHLTLMALKLACEFLTKGGTFVTKVFRSKDYQPLIWIFQQFFNKVQSTKPQASR 187

Query: 213 AESVEMFLLAKG 224
            ES E+F++ +G
Sbjct: 188 NESAEIFVVCQG 199


>gi|91089457|ref|XP_968154.1| PREDICTED: similar to cell division protein ftsj [Tribolium
           castaneum]
 gi|270012568|gb|EFA09016.1| hypothetical protein TcasGA2_TC006724 [Tribolium castaneum]
          Length = 228

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 124/210 (59%), Gaps = 7/210 (3%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
            SS +WL+R + DPYV++A++  +R RSA+KLL+I+++ +IL+    ++D G++PGSWSQ
Sbjct: 15  ASSHEWLSRQLTDPYVEKAKIMNYRCRSAFKLLEIDDRFKILRPGFVVIDCGAAPGSWSQ 74

Query: 84  VAARITGSNANNTR-----VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGG-NP 136
           VA R   S+ ++ +     V++ID   +  I G       DF D+ S E + + +GG   
Sbjct: 75  VAVRRVNSDGSDPKQAQGLVLSIDKQQIFAINGATILGNLDFTDVKSQEILVEVLGGKKA 134

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D V+SDMA    G +++D+   + LC +   FA++    G   +VK +Q G    +    
Sbjct: 135 DAVISDMAPNASGFKELDNENIIKLCYSVLRFAVQNSRAGACLVVKLWQCGQAKQLENDF 194

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K +  V +VKP +SR++S E+FLL + F+
Sbjct: 195 SKFYASVKYVKPNSSRSDSAEIFLLGRDFK 224


>gi|13384672|ref|NP_079586.1| putative rRNA methyltransferase 3 [Mus musculus]
 gi|73621844|sp|Q9DBE9|RRMJ3_MOUSE RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|12836606|dbj|BAB23730.1| unnamed protein product [Mus musculus]
 gi|74211447|dbj|BAE26467.1| unnamed protein product [Mus musculus]
 gi|123242263|emb|CAM23780.1| FtsJ homolog 3 (E. coli) [Mus musculus]
 gi|148702334|gb|EDL34281.1| FtsJ homolog 3 (E. coli) [Mus musculus]
          Length = 838

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F +V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFHRVQATKPQASRHESAEIFVVCQGF 200


>gi|195355564|ref|XP_002044261.1| GM15097 [Drosophila sechellia]
 gi|194129562|gb|EDW51605.1| GM15097 [Drosophila sechellia]
          Length = 321

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ +E  Q+L+   R VDL ++PGSWSQV A+   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
                 +    +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A
Sbjct: 65  EPLTPEDREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V 
Sbjct: 125 PDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVARKF 205


>gi|21430814|gb|AAM51085.1| SD16956p [Drosophila melanogaster]
          Length = 324

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D + + A+ +GWRARSA+KLLQ +E  Q+L+   R VDL ++PGSWSQV A+   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRLY 64

Query: 88  --ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
             +        +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A
Sbjct: 65  EPLPPEEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V 
Sbjct: 125 PDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVAREF 205


>gi|24648639|ref|NP_650947.1| CG7009 [Drosophila melanogaster]
 gi|9910868|sp|Q9VDD9|RMJ1B_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG7009;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|7300710|gb|AAF55857.1| CG7009 [Drosophila melanogaster]
          Length = 320

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D + + A+ +GWRARSA+KLLQ +E  Q+L+   R VDL ++PGSWSQV A+   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRLY 64

Query: 88  --ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
             +        +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A
Sbjct: 65  EPLPPEEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V 
Sbjct: 125 PDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKNVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVAREF 205


>gi|119713379|gb|ABL97442.1| 23S rRNA methylase [uncultured marine bacterium EB80_69G07]
          Length = 203

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 128/206 (62%), Gaps = 4/206 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
                S++W+N+   D YV++++++G+RARSAYKL++I+EK ++ +    ++D+G++PGS
Sbjct: 2   KKNKISKNWINKQRRDTYVRQSKVDGYRARSAYKLIEIDEKFKVFKGGISVIDIGAAPGS 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
           WSQ A+++  +      +++ID+  ME I      + DF + +    I++ +    D+V+
Sbjct: 62  WSQYASKVVKNGT----IISIDLKKMEKIKNTIQIEGDFTEPNIQAKIKKNLHNPIDVVM 117

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA  T G + +D ++T  LC+ A  F+ ++++  G F+ K F G + N+I+ L KK F
Sbjct: 118 SDMAVNTTGIKDVDAIQTGELCKEAMIFSKDVISEKGIFIAKIFMGRSFNEIVALGKKIF 177

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           ++V   KP +SR +S E F++ K  R
Sbjct: 178 REVKVFKPNSSRKDSKESFIICKNLR 203


>gi|330801002|ref|XP_003288520.1| hypothetical protein DICPUDRAFT_10143 [Dictyostelium purpureum]
 gi|325081423|gb|EGC34939.1| hypothetical protein DICPUDRAFT_10143 [Dictyostelium purpureum]
          Length = 191

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 8/198 (4%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W+ RH+ D YV+ A+     +R+A+KL+ IN++ ++L+    +VDLG+SPGSW+Q+A   
Sbjct: 1   WMKRHLTDIYVKEAKALSLVSRAAFKLININKQLRLLKPGMIVVDLGASPGSWTQIAR-- 58

Query: 89  TGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
                +N  V+++DI  + +      F + DF   ++ + I +      D +LSDMA   
Sbjct: 59  -AEVKDNGLVISVDINSNFQLTEKAPFIQGDFTKKETQDKILEF----ADSILSDMAPHY 113

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G  ++DH R + L   A  FAL++L  GG F+ K  +GG   +   LL+K F  V  +K
Sbjct: 114 CGIPQVDHSRLIELQTTALNFALQVLKPGGSFVCKVSRGGEEKEFFKLLEKDFASVKTMK 173

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E++ +AK F
Sbjct: 174 PDASRKESTEIYYIAKDF 191


>gi|170042491|ref|XP_001848957.1| AdoMet-dependent rRNA methyltransferase spb1 [Culex
           quinquefasciatus]
 gi|167866033|gb|EDS29416.1| AdoMet-dependent rRNA methyltransferase spb1 [Culex
           quinquefasciatus]
          Length = 857

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D + + A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +
Sbjct: 9   KDRKDKFYKLAKETGYRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQ---N 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
              ++ V+ +D+  ++ + G      D     +   + + +     D+VL+D A     +
Sbjct: 66  MPVSSIVIGVDLYAIKNVPGCISLVGDITSDKTKSDLTKELKTWKADVVLNDGAPNVGRN 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  + + L  +AT  A + L  GG F+ K F+    N ++ +LK+ F+KV   KP A
Sbjct: 126 WLFDAYQQVCLTLSATKLATQFLRPGGWFITKVFRSKDYNALIWVLKQLFKKVHATKPSA 185

Query: 211 SRAESVEMFLLAKGFR 226
           SR ES E+F++ + +R
Sbjct: 186 SRNESAEIFVVCQHYR 201


>gi|15791077|ref|NP_280901.1| hypothetical protein VNG2263G [Halobacterium sp. NRC-1]
 gi|169236828|ref|YP_001690028.1| 23S rRNA methyltransferase [Halobacterium salinarum R1]
 gi|74568838|sp|Q9HN40|RLME_HALSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703307|sp|B0R7G3|RLME_HALS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|10581676|gb|AAG20381.1| cell division protein [Halobacterium sp. NRC-1]
 gi|167727894|emb|CAP14682.1| 23S rRNA methyltransferase [Halobacterium salinarum R1]
          Length = 259

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 104/191 (54%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +++ EG+R+R+AYKL Q++++  +L     +VDLG++PG W QVAA   G+  
Sbjct: 4   RKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGARG 63

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               V    I   E   G++  + D  + ++ + +R A  G+ D+V+SDMA    G   +
Sbjct: 64  KVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGSADVVVSDMAPDMTGEYDL 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L   A   A E+L+ GG F+VK F G    D+L  ++  F  V    P ASR 
Sbjct: 124 DHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADIEDEFAFVATHSPDASRD 183

Query: 214 ESVEMFLLAKG 224
            S E++++ K 
Sbjct: 184 ASSELYVVGKN 194


>gi|312385342|gb|EFR29867.1| hypothetical protein AND_00887 [Anopheles darlingi]
          Length = 308

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KL+ ++E + IL    R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLIHLDETYNILDGVTRAVDLCAAPGSWSQVLSKRLY 64

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDM 143
                 + +  ++VA+D+  M P+ GV   + D     + E I      G    LV+ D 
Sbjct: 65  LSREEKDRDEVKIVAVDLQAMGPLPGVIQLRGDITRFTTAEAIISHFDEGQKAQLVICDG 124

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA      +L  GG F+ K F+G  T+ +   L+  F  V
Sbjct: 125 APDVTGLHDMDEYLQSQLLLAALGITTFVLVPGGTFVAKIFRGKCTHSLYSQLRIFFDTV 184

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SR  S+E F++ +G+
Sbjct: 185 DIAKPQSSRNSSIEAFVVCQGY 206


>gi|193690534|ref|XP_001942837.1| PREDICTED: putative rRNA methyltransferase 3-like [Acyrthosiphon
           pisum]
          Length = 834

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D +   A+  G+R+R+A+KLLQ+N K + LQ  R ++DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYHLAKETGFRSRAAFKLLQLNRKFEFLQKARVLIDLCAAPGGWMQVAKQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTI 148
            +   ++ VV +D+  ++P+ G      D         + + +     D+VL+D A    
Sbjct: 65  -NMPVSSIVVGVDLYPIKPVPGCICLTEDITTPQCQSALNKELQTYKADVVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D      L  +A       L  GG F+ K F+    N ++ + K+ F+KV   KP
Sbjct: 124 QNWIYDAYTQSCLTLSALKLCCHNLREGGWFITKVFRSKDYNALMWVFKQLFRKVHATKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR+ES E+F++ + + K
Sbjct: 184 QASRSESAEIFVVCQYYLK 202


>gi|115496334|ref|NP_001068830.1| putative rRNA methyltransferase 3 [Bos taurus]
 gi|109659216|gb|AAI18407.1| FtsJ homolog 3 (E. coli) [Bos taurus]
          Length = 834

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S  G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKSKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWAHDAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|114778047|ref|ZP_01452947.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551653|gb|EAU54206.1| cell division protein (filamentous temperature sensitivity, 23S
           rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
           [Mariprofundus ferrooxydans PV-1]
          Length = 220

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 6/216 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRI 71
           + Q+ K+++ + +S  W  RH NDP+V+RAQ EG R+R+A+KL +I ++H + +  N  +
Sbjct: 1   MAQQSKSKAARKTS-AWFQRHSNDPHVKRAQKEGKRSRAAFKLTEILDEHGLKISKNAVV 59

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           VDLG +PGSWS   AR  G       V+ ID+L ++ I GV   + DF   D    + +A
Sbjct: 60  VDLGCAPGSWSVELARRVGPGGI---VIGIDLLPLDGITGVTLIQGDFDSPDGQAALAEA 116

Query: 132 IGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           + G   DLV+SDMA    G + +D +R + L E    FA + L  GGD L+KTF G   +
Sbjct: 117 LQGRMVDLVVSDMAPEMAGDKLVDQMRMIGLNEMTLHFARQYLRPGGDILMKTFMGEGYD 176

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                L   F+K+ ++KP ASR  S E FLL + F+
Sbjct: 177 AFRKELGLSFKKIKNIKPAASRKTSSEFFLLGREFK 212


>gi|190571015|ref|YP_001975373.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019536|ref|ZP_03335342.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190357287|emb|CAQ54715.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212994958|gb|EEB55600.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 192

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 123/193 (63%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++I++K ++LQ  ++I+DLG+ PG WSQVA++   S  
Sbjct: 1   MNDQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASKKGAS-- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
               V+A+DI  +  I GV+  + D +     E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VIAVDIKPINAISGVECIQCDIISE--LEILREKFKDHKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   LN  G F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLNHDGKFVVKIFQGESDKDFCNELKKMFKTVRYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|308804277|ref|XP_003079451.1| FtsJ-like methyltransferase family protein (ISS) [Ostreococcus
           tauri]
 gi|116057906|emb|CAL54109.1| FtsJ-like methyltransferase family protein (ISS) [Ostreococcus
           tauri]
          Length = 328

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ------- 83
           ++   D Y ++A+ EGWRARSA+KLLQI+E   I +  +  VDL ++PGSWSQ       
Sbjct: 24  SKDKRDIYYRKAKEEGWRARSAFKLLQIDESFDIFRGVKHAVDLCAAPGSWSQVLSRKLY 83

Query: 84  -VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGGNPDLVLS 141
             A R   S +   ++VAID+  M PI GV   + D   LD   E +    G   DL++ 
Sbjct: 84  LPAVRAGVSESELPKIVAIDLQPMAPIEGVTTIQGDITSLDKVLEVLSHFDGKQADLIVG 143

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  A    A  +L  GG F+ K F+G   + +   LK  F 
Sbjct: 144 DGAPDVTGLHDLDEFMQAQLILAGLTVATHILKPGGTFIAKIFRGKDVSLLYSQLKIFFP 203

Query: 202 KVIHVKPVASRAES 215
            V   KP +SR  S
Sbjct: 204 DVTCAKPKSSRNSS 217


>gi|260824435|ref|XP_002607173.1| hypothetical protein BRAFLDRAFT_68032 [Branchiostoma floridae]
 gi|229292519|gb|EEN63183.1| hypothetical protein BRAFLDRAFT_68032 [Branchiostoma floridae]
          Length = 207

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 116/202 (57%), Gaps = 4/202 (1%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + R ++DPYVQ+A ++ +R RSAYKL+++++K + L+    +VD G+ PGSW+QVA    
Sbjct: 1   MVRQLSDPYVQKAAVDNFRCRSAYKLIEMDDKFRFLKPGLAVVDCGACPGSWTQVAVNRV 60

Query: 90  GSNANNTR--VVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPDLVLSDMAY 145
            +     R  VV +D+  M PI G K     DF   ++ E IR+ +  G  D+VLSDMA 
Sbjct: 61  NAAEGFPRGMVVGVDLQHMSPIPGAKLLSNCDFTLEETQEHIRKHLPNGKADVVLSDMAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +DH + +SL  +A  F+  +L   G F+ K + G        ++   F+ V  
Sbjct: 121 NATGLASLDHDQIVSLQLSAFKFSKVVLREDGVFVCKLWDGSHCKKFQSVVGDVFKFVKV 180

Query: 206 VKPVASRAESVEMFLLAKGFRK 227
           VKP +SR+ S E+F+ A+G++K
Sbjct: 181 VKPQSSRSNSAELFVFARGYKK 202


>gi|332025804|gb|EGI65961.1| Putative rRNA methyltransferase 3 [Acromyrmex echinatior]
          Length = 836

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K +  Q +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKETGYRSRAAFKLIQLNRKFEFFQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
            + + ++ V+ +D+  ++PI G      D +       I R+      D+VL+D A    
Sbjct: 65  -NMSISSIVIGVDLFPIKPIPGCLSLVEDIMTDKCRVAISRELKTWKADVVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
                D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP
Sbjct: 124 KSWLHDAYQQVVLTLSALKLATQFLKAGGWFVTKVFRSKDYNPLIWVLKQLFKKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRNESAEIFVVCQYY 200


>gi|322795549|gb|EFZ18245.1| hypothetical protein SINV_12039 [Solenopsis invicta]
          Length = 833

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y Q A+  G+R+R+A+KL+Q+N K Q LQ +R  +DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKYYQLAKDTGYRSRAAFKLIQLNRKFQFLQKSRVCIDLCAAPGGWMQVARQ-- 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
            +   ++ VV +D+  ++PI G      D         + R+      D+VL+D A    
Sbjct: 65  -NMPVSSVVVGVDLFPIKPIPGCFSLVEDITTDKCKAALSRELKTWKADVVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A + L  GG F+ K F+    + ++ +LK+ F+KV   KP
Sbjct: 124 KNWLHDAFQQSVLTLSALKLATQFLRPGGWFITKVFRSKDYHPLIWVLKQLFEKVHATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRIESAEIFVVCQYY 200


>gi|134046035|ref|YP_001097521.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C5]
 gi|189040313|sp|A4FYM2|RLME_METM5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|132663660|gb|ABO35306.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanococcus maripaludis
           C5]
          Length = 258

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A 
Sbjct: 6   KRWVLQRKNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            I G       +V ID+  ++P+    V   K D    +  +  R  +   PD+++ D +
Sbjct: 66  DIVGDKGF---IVGIDLQTVKPLPYENVIAIKGDMTKEEILKQARDLLPEKPDVIICDAS 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F K  
Sbjct: 123 PNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR ES E++++ K F
Sbjct: 183 TTKPRASRDESAEVYVIGKRF 203


>gi|315040654|ref|XP_003169704.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Arthroderma gypseum
           CBS 118893]
 gi|311345666|gb|EFR04869.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Arthroderma gypseum
           CBS 118893]
          Length = 316

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 41/237 (17%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+ ++E+  +       S RR+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSNPDSVRRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR-------------------------------VVAIDILDMEPILGVKF 114
           +R+     +  R                               +V++D+  M P+ G+  
Sbjct: 65  SRVLIRGESFGRRQYELDRGRGGAGESAAGDAGEDVRPRRDVKIVSVDLQPMAPLEGITT 124

Query: 115 FKFDFLDLDSWEFIRQAIGG-----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            + D     +   +  A+         DLVLSD A    G   +D      L  AA   A
Sbjct: 125 LQADITHPSTAPLLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLA 184

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + +L  GG F+ K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 185 MGILRPGGTFVAKIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 241


>gi|328876585|gb|EGG24948.1| rRNA methyltransferase [Dictyostelium fasciculatum]
          Length = 873

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G  +  L +   D +   A+ +G+R+R+A+KL+Q+N+K+  L S +  +DL ++PG W Q
Sbjct: 2   GQKKKKLAKGRLDKFYYLAKEQGFRSRAAFKLIQLNKKYNFLGSAKACLDLCAAPGGWMQ 61

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
           VA++   + +    +V +D+  + PI      + D         I++A+     D+ L D
Sbjct: 62  VASKYMPAQSV---IVGVDLDPIRPIRNCIGLQEDITTAKCRAEIKKALKTWKVDICLHD 118

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A         D  +   L   A   A E L  GG F+ K F+G   N ++ +  + F+K
Sbjct: 119 GAPNMGTSWIQDAFQQAELTLHALKLATEFLTAGGWFVTKVFRGPDYNSLMWVFHQLFKK 178

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP ASR  S E+F++ +GF
Sbjct: 179 VDSTKPQASRNASAEIFVVCQGF 201


>gi|195133724|ref|XP_002011289.1| GI16447 [Drosophila mojavensis]
 gi|193907264|gb|EDW06131.1| GI16447 [Drosophila mojavensis]
          Length = 826

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G+R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +    ++
Sbjct: 11  RKDKFYQLAKETGFRSRAAFKLIQLNRKFGFLQQSQVCIDLCAAPGGWMQVAKQNMPVSS 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
               V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 71  I---VIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A     + L  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLGTQFLRGGGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ +G+
Sbjct: 188 KESAEIFVVCQGY 200


>gi|159477739|ref|XP_001696966.1| hypothetical protein CHLREDRAFT_105410 [Chlamydomonas reinhardtii]
 gi|158274878|gb|EDP00658.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 328

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N K+  L   R ++DL ++PG W QVAA+        
Sbjct: 12  DKFYHLAKEQGFRSRAAFKLIQLNRKYNFLGKCRTLLDLCAAPGGWLQVAAKTMPVG--- 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
           + ++ +D+  ++PI GVK    D         I R+A G   D+VL D A    G    +
Sbjct: 69  SLILGVDLAPIKPIRGVKTLVQDITTQQCRTAIKREAGGAKMDVVLHDGAPNVGGAWASE 128

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   +   A+E L   G F+ K F+    N +L    + F KV   KP ASR  
Sbjct: 129 AYNQSSLVLDSLRLAVETLAPKGTFVTKIFRSKDYNALLYAFNQLFDKVEATKPAASRNT 188

Query: 215 SVEMFLLAKGFR 226
           S E+F++  GF+
Sbjct: 189 SAEIFVVCLGFK 200


>gi|170580731|ref|XP_001895384.1| ribosomal RNA methyltransferase [Brugia malayi]
 gi|158597684|gb|EDP35763.1| ribosomal RNA methyltransferase, putative [Brugia malayi]
          Length = 238

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 8/213 (3%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K +    + + +L++  +D + ++A+   +RARSAYKLL+INEK++I++    +VD+G++
Sbjct: 23  KGKKSTATLK-YLHKQWSDEFSKKAREHSYRARSAYKLLEINEKYKIIKPGMVVVDVGAA 81

Query: 78  PGSWSQVAARITGSN-ANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGGN 135
           PGSW QV A I   N  +N  ++ ID+  + PI GV F    D     + E I+Q + G 
Sbjct: 82  PGSWCQVVADIVQPNVYDNALILGIDLQPILPISGVNFLDLSDITAQKTHENIKQILNGR 141

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE----MLNIGGDFLVKTFQGGTTN 190
             D+V+SDMA    G   IDH R +SLC      ++      L   G FL K + G    
Sbjct: 142 SVDVVISDMAPNPTGDGGIDHERILSLCATVLELSVRKSVIPLVKNGTFLCKIWDGPRRE 201

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           + +  LK+ F+ V  VKP ASR  S E++LLA 
Sbjct: 202 EFIERLKQDFRNVYTVKPKASRDHSAEIYLLAM 234


>gi|195113347|ref|XP_002001229.1| GI10674 [Drosophila mojavensis]
 gi|193917823|gb|EDW16690.1| GI10674 [Drosophila mojavensis]
          Length = 305

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR--- 87
           ++   D Y ++A+ EGWRARSA+KL+ IN++  +L + +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDVYYRQAKEEGWRARSAFKLMHINDQFGVLDNVQRAVDLCAAPGSWSQVLSRKLY 64

Query: 88  ---ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVL 140
              +T    +  ++VA+D+  M PI GV   + D     + + I             LV+
Sbjct: 65  DCCLTDDQKSEVKIVAVDLQAMAPIRGVVQLQGDITKQSTAKAIISHFNYGDDKKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  +A   A  +L  GG F+ K F+G     +   L   F
Sbjct: 125 CDGAPDVTGVHEMDEYMQSQLIISALSIATFVLESGGKFVAKIFKGNANCMLESRLLSFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
                 KP +SR  S E F++   FR
Sbjct: 185 NNFQIYKPPSSRPSSNEAFVVCCDFR 210


>gi|150403543|ref|YP_001330837.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C7]
 gi|189040314|sp|A6VJR0|RLME_METM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|150034573|gb|ABR66686.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C7]
          Length = 258

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A 
Sbjct: 6   KRWVLQRKNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            I G       +V ID+  ++P+    V   K D    +  +  +  +   PD+++ D +
Sbjct: 66  DIVGEKGF---IVGIDLQTVKPLPYENVIAIKGDMTKEEILKQAKDLLPEKPDVIICDAS 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F K  
Sbjct: 123 PNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR ES E++++ K F
Sbjct: 183 TTKPRASRDESAEVYVIGKRF 203


>gi|159119934|ref|XP_001710185.1| FtsJ-like protein [Giardia lamblia ATCC 50803]
 gi|157438303|gb|EDO82511.1| FtsJ-like protein [Giardia lamblia ATCC 50803]
          Length = 268

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 5/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +++   D Y + A+ EGWRARSAYKLLQ++E++ + +   R VDL ++PGSWSQV +   
Sbjct: 1   MSKDKRDIYYRLAKDEGWRARSAYKLLQLDEQYDLFRGVTRAVDLCAAPGSWSQVLSHKL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTI 148
            ++A    ++++D+  M P+  V   + D    +  + I +   G    LV+ D A    
Sbjct: 61  PADAI---IISVDLAPMAPLPRVTQIQGDITRKEVADKIIELCHGEMCQLVVCDGAPDVT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK-KHFQKVIHVK 207
           G   +D      L + A   A ++L  GG F+ K F+G     +L       F+ V   K
Sbjct: 118 GVHDLDEYVQAGLVDHAMTLARQILAPGGTFVSKVFRGECLESLLRRNALSFFKTVDISK 177

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S+E F++   +
Sbjct: 178 PDASRASSMECFMVCADY 195


>gi|158290286|ref|XP_311882.4| AGAP003002-PA [Anopheles gambiae str. PEST]
 gi|157017821|gb|EAA07890.4| AGAP003002-PA [Anopheles gambiae str. PEST]
          Length = 868

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D + + A+  G+R+R+A+KL+Q+N +   LQ ++  +DL ++PG W QVA +   +
Sbjct: 9   KDRRDKFYKLAKESGYRSRAAFKLIQLNRRFGFLQQSQVCLDLCAAPGGWMQVAKQ---N 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
              ++ V+ +D+  ++ + G      D     +   + + +     D+VL+D A     +
Sbjct: 66  MPVSSIVIGVDLYPIKNVPGCISLIGDITSDKTKADLAKELKTWKVDVVLNDGAPNVGKN 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP A
Sbjct: 126 WLHDAYQQVCLTLSAVKLATQFLRPGGWFITKVFRSKDYNALIWVLKQLFRKVHATKPSA 185

Query: 211 SRAESVEMFLLAKGFR 226
           SR ES E+F++ + ++
Sbjct: 186 SRKESAEIFVVCQYYK 201


>gi|302659743|ref|XP_003021559.1| hypothetical protein TRV_04406 [Trichophyton verrucosum HKI 0517]
 gi|291185462|gb|EFE40941.1| hypothetical protein TRV_04406 [Trichophyton verrucosum HKI 0517]
          Length = 309

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 34/230 (14%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+ ++E+  +       S RR+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------VVAIDILDMEPILGVKFFKFDFLD 121
           +R+     +  R                        +V++D+  M P+ G+   + D   
Sbjct: 65  SRVLIRGESFGRRQYELDRGGTGGVAEEVRPRRDVKIVSVDLQPMAPLEGITTLQADITH 124

Query: 122 LDSWEFIRQAIGG-----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
             +   +  A+         DLVLSD A    G   +D      L  AA   A+ ++  G
Sbjct: 125 PSTVPLLLNALNDEGEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGIIRPG 184

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G F+ K F+G   + +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 185 GTFVAKIFRGRDVDVLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 234


>gi|225629924|ref|YP_002726715.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia sp. wRi]
 gi|225591905|gb|ACN94924.1| ribosomal RNA large subunit methyltransferase J, putative
           [Wolbachia sp. wRi]
          Length = 192

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 82/193 (42%), Positives = 125/193 (64%), Gaps = 9/193 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND YVQ+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG W QVA++   +  
Sbjct: 1   MNDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVASQKGAN-- 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK 152
               VVA+D+  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + 
Sbjct: 59  ----VVALDVKPMNAINGVEFIQCDIINE--FEILREKFKDQKFDVILSDMAPESCGLKS 112

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +DH+R M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR
Sbjct: 113 LDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSR 172

Query: 213 AESVEMFLLAKGF 225
           +ES EM+L++ GF
Sbjct: 173 SESTEMYLVSLGF 185


>gi|195110569|ref|XP_001999852.1| GI24754 [Drosophila mojavensis]
 gi|193916446|gb|EDW15313.1| GI24754 [Drosophila mojavensis]
          Length = 382

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ +E   +L+   R VDL ++PG WSQV ++   
Sbjct: 5   SKDRRDIFYRLAKEQGWRARSAFKLLQADETFNLLEGLTRAVDLCAAPGGWSQVLSKRMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMA 144
                 +    +++A+D+  M PI GV   + D     + E I +   G   +LV++D A
Sbjct: 65  EPRSEKDREQVKIIAVDMQGMAPIDGVTQLRADITKESTAEEIIKFFDGKKAELVVTDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G    D      L  +    A  +L  GG F+ K ++   T+ +   L++ F+ V 
Sbjct: 125 PDVTGLHDWDAYMQAELLLSGLSIATYILEEGGTFMGKVYRAANTSRVYLQLQRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR+ S+E F++ + F
Sbjct: 185 LFKPSASRSSSIEAFVVCRQF 205


>gi|332526116|ref|ZP_08402254.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rubrivivax
           benzoatilyticus JA2]
 gi|332109959|gb|EGJ10587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rubrivivax
           benzoatilyticus JA2]
          Length = 204

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN----- 94
           + AQ +G+R+R+AYKL +I+E   +++  +  VDLG++PG+WSQ   R            
Sbjct: 2   KAAQRDGYRSRAAYKLKEIDEALGLIKPGQVAVDLGATPGAWSQYLRRRFAPEGAAAGAL 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKI 153
           +  ++A+DILD EPI GV F + DF + +    +   + G P D+V+SDMA    G    
Sbjct: 62  DGTIIALDILDFEPIEGVTFLQGDFREDEVAARLAAELAGRPVDIVVSDMAPNLSGIPVS 121

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R   L E A  FAL+ L   G  + K F G   + ++ L K  F+ V  +KP ASR 
Sbjct: 122 DAARIAHLVELAVEFALQHLKPEGALVCKAFHGSGYSQLVKLFKDSFRVVKPIKPKASRD 181

Query: 214 ESVEMFLLAKGFR 226
           +S E FL+  G +
Sbjct: 182 KSAETFLVGIGPK 194


>gi|17553860|ref|NP_497655.1| hypothetical protein H06I04.3 [Caenorhabditis elegans]
 gi|7206709|gb|AAF39868.1| Hypothetical protein H06I04.3a [Caenorhabditis elegans]
          Length = 833

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 109/199 (54%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A    
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L  GG F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 LNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + ++K
Sbjct: 184 AASRLESAEIFVVCEVYQK 202


>gi|159904677|ref|YP_001548339.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C6]
 gi|226703310|sp|A9A6B9|RLME_METM6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|159886170|gb|ABX01107.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis C6]
          Length = 258

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A 
Sbjct: 6   KRWVLQRKNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            I G       +V ID+  ++P+    V   K D    +  +  R  +   PD+++ D +
Sbjct: 66  DIVGDKGF---IVGIDLQTVKPLPYENVIAIKGDMTKEEILKQARDLLPEKPDVIICDAS 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +DH R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F K  
Sbjct: 123 PNISGVWDVDHARSLELTTMALMTATKMLKRGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR ES E++++ K F
Sbjct: 183 TTKPRASRDESAEVYVIGKRF 203


>gi|71020429|ref|XP_760445.1| hypothetical protein UM04298.1 [Ustilago maydis 521]
 gi|73621943|sp|Q4P6G5|SPB1_USTMA RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|46100114|gb|EAK85347.1| hypothetical protein UM04298.1 [Ustilago maydis 521]
          Length = 921

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 13/215 (6%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +K + ++ +G           D +   A+ +G+R+R+A+KL+Q+N+K   L+  R  +
Sbjct: 1   MGKKQEKKTAKG---------RLDKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCI 51

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DL ++PG W QVA++   +N   + +V +D++ ++PI     F  D       + +RQ +
Sbjct: 52  DLCAAPGGWLQVASKFMPAN---SLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQIL 108

Query: 133 G-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+V+ D A         D      L   +   A+E L  GG F+ K F+    N+
Sbjct: 109 KDWKADIVIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNN 168

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +L +  + F+KV   KP +SR  S E+F++ +G++
Sbjct: 169 LLWVFNQLFKKVEATKPSSSRNVSAEIFVVCQGYK 203


>gi|308161650|gb|EFO64088.1| FtsJ-like protein [Giardia lamblia P15]
          Length = 268

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 5/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +++   D Y + A+ EGWRARSAYKLLQ++ ++ + +   R VDL ++PGSWSQV +   
Sbjct: 1   MSKDKRDIYYRLAKDEGWRARSAYKLLQLDAQYDLFRGVTRAVDLCAAPGSWSQVLSHKL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTI 148
            ++A    ++++D+  M P+  V   + D    +  + I +   G    LV+ D A    
Sbjct: 61  PADAV---IISVDLAPMAPLPRVTQIQGDITRKEVADKITELCHGEMCQLVVCDGAPDVT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK-KHFQKVIHVK 207
           G   +D      L + A   A ++L   G F+ K F+G     +L       F+ V   K
Sbjct: 118 GVHDLDEYVQAGLVDHAMALARQILAPDGTFVSKVFRGECLESLLRRNALSFFKNVDISK 177

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S+E F++ +G+
Sbjct: 178 PDASRASSMECFMVCRGY 195


>gi|260950745|ref|XP_002619669.1| hypothetical protein CLUG_00829 [Clavispora lusitaniae ATCC 42720]
 gi|238847241|gb|EEQ36705.1| hypothetical protein CLUG_00829 [Clavispora lusitaniae ATCC 42720]
          Length = 298

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M +   S  R  +   +  R   G SS+ W+ R ++D + ++++ EG+R+R+AYKL++I+
Sbjct: 50  MSRSFFSFKRGNVVSPLFVRWKSGTSSKRWVARQMDDAHTKKSKAEGYRSRAAYKLIEID 109

Query: 60  EKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
            K ++  ++ R IVDLG +PG+W+QVA     S     R++ +D+++  P  G  F + D
Sbjct: 110 SKFRLFNKNTRNIVDLGFAPGAWTQVALARCKSKNITPRILGVDLINCSPPEGSSFLQGD 169

Query: 119 FLDLDSWEFIRQAIGGNPD-----LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
                +   I              LV+SDM   T G +  DH  +M LC+     A  +L
Sbjct: 170 IFSKKTHSEIVNFFDPEGHSQPLDLVMSDMMANTSGIKDNDHFASMDLCDGVLILACRLL 229

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              G+ ++K + G     +   L+K F KV   KP A RAES EM+ +A   R
Sbjct: 230 KKNGNLVMKFYTGKEERLLQNKLEKVFHKVFMTKPAACRAESREMYFVALKKR 282


>gi|242010550|ref|XP_002426028.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
 gi|212510038|gb|EEB13290.1| ribosomal RNA methyltransferase, putative [Pediculus humanus
           corporis]
          Length = 839

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 4/200 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           +  + +   D Y + A+  G+R+R+A+KLLQ+N K   L+S++ ++DL ++PG W QVA 
Sbjct: 4   KKKIGKQRKDRYYKLAKETGFRSRAAFKLLQLNRKFGFLESSKVLIDLCAAPGGWMQVAK 63

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
           +   +   ++ +V +D+  ++PI G      D         + +A+     D+VL D A 
Sbjct: 64  Q---NMPVSSVIVGVDLFPIKPIPGCISLVEDITTSKCKSSLTKALQTWKADVVLHDGAP 120

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
               +   D  + + L  +A     E L  GG F+ K F+    N +L + K+ F+KV  
Sbjct: 121 NVGTNWIHDAYQQVCLTLSALKLGTEFLREGGWFITKVFRSSDYNSLLWVFKQLFKKVQA 180

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP ASR+ES E+F+  K F
Sbjct: 181 TKPQASRSESAEIFVACKHF 200


>gi|313124823|ref|YP_004035087.1| 23S rRNA um-2552 2'-o-methyltransferase [Halogeometricum
           borinquense DSM 11551]
 gi|312291188|gb|ADQ65648.1| 23S rRNA Um-2552 2'-O-methyltransferase [Halogeometricum
           borinquense DSM 11551]
          Length = 256

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 2/191 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +A+ EG+R RSAYKL Q++E+  +      +VDLG++PG W QVAA     +  
Sbjct: 3   RDHYYNKAKQEGYRTRSAYKLKQLDEETGLFGPGNTVVDLGAAPGGWLQVAAEEVSDHGT 62

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKI 153
              V    I D++    V+  + D  D ++ E +R+ IG    D+V+SDMA    G   +
Sbjct: 63  VVGVDLQRIRDIDA-DNVETIRGDMTDEETKESLRERIGEEGADVVISDMAPNMTGEYSL 121

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L   A   AL++L  GGDF VK F G    D    +++ FQ V  ++P ASR 
Sbjct: 122 DHARSIHLARQAFEVALDLLPAGGDFAVKVFDGQDLADFRADVEEEFQYVRSIRPDASRD 181

Query: 214 ESVEMFLLAKG 224
           ES E +L+ K 
Sbjct: 182 ESSEQYLVGKH 192


>gi|55379460|ref|YP_137310.1| ribosomal RNA large subunit methyltransferase J [Haloarcula
           marismortui ATCC 43049]
 gi|74516619|sp|Q5UYP9|RLME_HALMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|55232185|gb|AAV47604.1| ribosomal RNA large subunit methyltransferase J [Haloarcula
           marismortui ATCC 43049]
          Length = 263

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 7/197 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  RA+ EG+RARSAYKL Q+++   +L   R +VDLG++PG W QVAA   G    
Sbjct: 4   KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAERIGERGT 63

Query: 95  NTRVVAIDILDM-EPILGVKFFKFDFLDLDSWEFIRQAIG------GNPDLVLSDMAYPT 147
              V    I D+ +P   V++ + D  +  + + IR+ +G      G  D+V+SDMA   
Sbjct: 64  LVGVDRQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPVDVVISDMAPNM 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +DH R++ L   A   A ++L+ GGDF  K F G   +D++  ++  F+ V  V+
Sbjct: 124 TGQYDLDHARSVHLVRQAFEVATDLLDAGGDFCAKVFDGQDLDDLIADIEPEFEYVREVR 183

Query: 208 PVASRAESVEMFLLAKG 224
           P ASR  S E++L+AK 
Sbjct: 184 PDASRDSSSELYLVAKH 200


>gi|121699614|ref|XP_001268080.1| tRNA methyltransferase, putative [Aspergillus clavatus NRRL 1]
 gi|119396222|gb|EAW06654.1| tRNA methyltransferase, putative [Aspergillus clavatus NRRL 1]
          Length = 428

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 110/262 (41%), Gaps = 67/262 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR---------------------------------------------VVA 100
           +R+     +  R                                             +V+
Sbjct: 65  SRVLIKGESFGRRAWIEKKRKEREALRRIDNAVEGQETVPEEEMEGTAELKPRKNVKIVS 124

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-----------------DLVLSDM 143
           ID+  M P+ G+   + D     +   + +A+                     DLV+SD 
Sbjct: 125 IDLQPMAPLEGITTLQADITHPSTIPLLLRALDPEAYNSADPSPSELQQPHPVDLVISDG 184

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  +A   AL +L  GG F+ K F+G   + +   L+  F+KV
Sbjct: 185 APDVTGLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRGRDVDLLYAQLRTVFEKV 244

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SRA S+E F++ +GF
Sbjct: 245 SVAKPRSSRASSLEAFVVCEGF 266


>gi|312372717|gb|EFR20615.1| hypothetical protein AND_19798 [Anopheles darlingi]
          Length = 890

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D + + A+  G+R+R+A+KL+Q+N +   LQ ++  +DL ++PG W QVA +   +
Sbjct: 9   KDRKDKFYKLAKESGYRSRAAFKLIQLNRRFAFLQQSQVCIDLCAAPGGWMQVAKQ---N 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
              ++ V+ +D+  ++ + G      D     +   + + +     D+VL+D A     +
Sbjct: 66  MPVSSIVIGVDLYPIKNVPGCISLVGDITSDKTKSDLAKELKTWKADVVLNDGAPNVGKN 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  + + L  +A   A + L  GG F+ K F+    N ++ +LK+ F+KV   KP A
Sbjct: 126 WLHDAYQQVCLTLSAVKLATQFLRPGGWFITKVFRSKDYNALIWVLKQLFKKVHATKPSA 185

Query: 211 SRAESVEMFLLAKGFR 226
           SR ES E+F++ + +R
Sbjct: 186 SRKESAEIFVVCQHYR 201


>gi|297618952|ref|YP_003707057.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus voltae A3]
 gi|297377929|gb|ADI36084.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus voltae A3]
          Length = 298

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +   D Y   A+   +R+R+ YKL Q+NEK   ++ +  ++DLG +PG W Q A 
Sbjct: 6   KRWVLQRKRDFYYNLAKKNQYRSRATYKLFQLNEKFNFIKEDNVVIDLGCAPGGWLQSAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            I G +     VV ID+  ++P+    V   K D    +  +     +  NPD+++ D +
Sbjct: 66  EIVGEDGF---VVGIDLQKVKPLKYDNVVAIKGDMTKEEVLKEALSYLPRNPDVIICDAS 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +DH  ++ L   A   +  +L  GG+F+VK FQG   N    L+  +F KVI
Sbjct: 123 PNVSGVWDVDHTCSLILTTMALMTSTRVLKRGGNFVVKVFQGDLFNKYTDLVGTYFDKVI 182

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR ES E++++ + F
Sbjct: 183 TTKPKASRGESAEVYVIGRRF 203


>gi|311266963|ref|XP_003131335.1| PREDICTED: putative rRNA methyltransferase 3-like [Sus scrofa]
          Length = 836

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLGRGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|149723383|ref|XP_001501025.1| PREDICTED: similar to FtsJ homolog 3 [Equus caballus]
          Length = 837

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|298709155|emb|CBJ31099.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1004

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 4/195 (2%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
              D Y + A+ +G+RARSA+KL++IN+K+  L S +  +DL ++PG W QVAA+     
Sbjct: 8   QDRDKYYRLAKDQGFRARSAFKLIEINKKYDFLSSAKVCIDLCAAPGGWCQVAAKHMPRG 67

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHR 151
           +    ++ +D+L + PI  VK    D    +    + R+      D+VL D A       
Sbjct: 68  SI---ILGVDLLPIRPIPNVKTLVHDITTDECRTALKREMQTWKADVVLCDGAPNVGTAY 124

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
           K D      +   A   A + L  GG F+ K ++    N ++ ++++ F++   VKP +S
Sbjct: 125 KKDAYEQNEIALHALRVATQHLKKGGTFVTKVYRSQDYNSLMWVIQQFFEEHQAVKPASS 184

Query: 212 RAESVEMFLLAKGFR 226
           R++S E+F++ + ++
Sbjct: 185 RSQSAEIFVVGRNYK 199


>gi|308474701|ref|XP_003099571.1| hypothetical protein CRE_29065 [Caenorhabditis remanei]
 gi|308266583|gb|EFP10536.1| hypothetical protein CRE_29065 [Caenorhabditis remanei]
          Length = 784

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KL+Q+N++ + L+ +R  VDL ++PG W QVA++  
Sbjct: 7   IGKQRRDKYYKLAKEAGYRSRAAFKLVQLNKRFEFLEKSRATVDLCAAPGGWMQVASQFM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
                ++ +V +D+  ++PI      + D    ++   I++ +   + D VL D A    
Sbjct: 67  ---PVSSLIVGVDLAPIKPIKNCIALQGDITTNETRAAIKKELKTWSADCVLHDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +   D  +   L  +A   A ++L  GG F+ K F+    + ++ + +K F++V   KP
Sbjct: 124 LNWVHDAFQQNCLTLSALKLATQILRKGGTFVTKVFRSNDYSCLIRVFEKLFKRVHVWKP 183

Query: 209 VASRAESVEMFLLAKGFRK 227
            ASR ES E+F++ + + K
Sbjct: 184 AASRLESAEIFVVCEVYLK 202


>gi|198455401|ref|XP_001359976.2| GA20027 [Drosophila pseudoobscura pseudoobscura]
 gi|198133228|gb|EAL29128.2| GA20027 [Drosophila pseudoobscura pseudoobscura]
          Length = 316

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ  E   +L    R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQAEETFHLLDGVTRAVDLCAAPGSWSQVLSKHMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ-AIGGNPDLVLSDMA 144
                      +++A+D+  M PI GV   + D     + E I +   G    LV+SD A
Sbjct: 65  EPRSPEEREKVKIIAVDLQGMAPIDGVHQLRADITKESTAEAIIEYFEGQKAQLVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG  + K ++   T+ +   L++ F+ V 
Sbjct: 125 PDSTGMHDFDVYMQGELLLSALSISTFILETGGSLVAKIYRADNTSRLYLQLQRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVARQF 205


>gi|196000356|ref|XP_002110046.1| hypothetical protein TRIADDRAFT_53586 [Trichoplax adhaerens]
 gi|190588170|gb|EDV28212.1| hypothetical protein TRIADDRAFT_53586 [Trichoplax adhaerens]
          Length = 266

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
             R  L+ +   R  + SS  WL R  +DPYV++A   G+R+RSA+KLL++++K +I + 
Sbjct: 28  GRRAILSARFYARGRKSSSSRWLRRQRDDPYVKKAMELGYRSRSAFKLLEMDKKFKIFKK 87

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWE 126
              ++D+G+SPGSW+QVA   TG       V+A+DI  M+ +     F   DF    +  
Sbjct: 88  GDIVIDIGASPGSWTQVALDKTGKRG---LVMAVDIRGMKSVGEAMIFDHMDFGVPSTHT 144

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           FI+  +     D+++SDM+    G  K DH   M+    A  F    L   G F+ K F 
Sbjct: 145 FIQNMLVNSKADVIMSDMSPNVAGSPKFDHQAIMTQALCALKFTFANLVYNGTFICKMFH 204

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G        +LK+++ ++   KP ASR+ES E + + +  +
Sbjct: 205 GSDEGLFKDMLKQNYHRINEFKPAASRSESNEFYYICRHRK 245


>gi|316972372|gb|EFV56050.1| putative serine protease pcp-1 [Trichinella spiralis]
          Length = 826

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 13/221 (5%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           +R    SS+ W+ RH+ DPYV R + E +R RSA+KLL+I+++ QIL+    ++DLGSSP
Sbjct: 605 HRRASSSSKQWIARHLRDPYVVRCRSENYRCRSAFKLLEIDDRFQILKPGMLVLDLGSSP 664

Query: 79  GSWSQVAARITGS----NANNTRVVAIDILDMEPILGVKFF------KFDFLDLDSWEFI 128
           GSWSQV +R   S    +    +V A+D   MEP+ GV +         D +D+      
Sbjct: 665 GSWSQVLSRRVNSVKLGSKPFGKVFAVDRQPMEPLDGVTWLGPLDLSVGDSVDVLLQRRR 724

Query: 129 RQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG--GDFLVKTFQ 185
           R   GG P D V+SDMA    G   +DH R + L   +   A+  L +     FL K +Q
Sbjct: 725 RLIDGGEPLDAVVSDMAPNATGCASVDHERIVQLGFLSLSIAIRCLKLSDRSFFLCKLWQ 784

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G         +K+HF     VKP ASR ES E++ LA+ F+
Sbjct: 785 GVEQWHFADEIKRHFGNFKIVKPTASRKESAELYFLARQFK 825


>gi|329910110|ref|ZP_08275236.1| Ribosomal RNA large subunit methyltransferase J [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546263|gb|EGF31294.1| Ribosomal RNA large subunit methyltransferase J [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 223

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 4/205 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +++WL+ HINDPYV+ AQ EG+RAR+ YKL +I+E  +++++ + IVDLGS+PGSWSQ  
Sbjct: 7   NKNWLHDHINDPYVKLAQKEGYRARAVYKLKEIDEGDKLIKAGQIIVDLGSTPGSWSQYV 66

Query: 86  ARI---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLS 141
                       +  ++ +D+L M+PI  V F   DF D      +   + G   D+VLS
Sbjct: 67  RNKLSGKAGGGIDGIIIGLDMLPMDPIADVHFILGDFRDHKVLRQLEVILAGRKVDVVLS 126

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R   + + A  F+   L   G  LVK F G   + I+   +  F+
Sbjct: 127 DMAPNLSGIASADAARMEHIIDLAIEFSQAHLKPSGALLVKCFNGSGYSQIVEKFRSEFK 186

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP AS+ +S E+FLL KG +
Sbjct: 187 TVSPKKPKASKDKSSEIFLLGKGVK 211


>gi|73965375|ref|XP_548033.2| PREDICTED: similar to FtsJ homolog 3 (E. coli) (predicted) [Canis
           familiaris]
          Length = 834

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F +V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFHRVQATKPQASRHESAEIFVVCQGF 200


>gi|326430676|gb|EGD76246.1| FtsJ cell division protein [Salpingoeca sp. ATCC 50818]
          Length = 934

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 9/210 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +S  G +R        D +   A+  G RARSA+KLLQ+N ++  L      +DL +
Sbjct: 1   MGKKSKTGKARR-------DKFYHLAKESGLRARSAFKLLQLNRQYDFLTGASVCIDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG W QVA      N+N T V+ +D++ ++PI G    + D         +R+ +    
Sbjct: 54  APGGWMQVAKEAMTKNSNTT-VIGVDLVPIQPIKGCISIQADITTEHCRAQLRKNMNHRK 112

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL D A         D      L   +   A + L  GG F+ K F+      +L +
Sbjct: 113 ADVVLHDGAPNVGTSWIQDAFTQAELVLQSLKLATQFLRKGGTFVTKVFRSRDYPKLLYV 172

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             K F+KV   KP +SR  S E+F++ + +
Sbjct: 173 FGKLFEKVHATKPSSSRNVSAEIFVVCQRY 202


>gi|284162072|ref|YP_003400695.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Archaeoglobus profundus
           DSM 5631]
 gi|284012069|gb|ADB58022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Archaeoglobus profundus
           DSM 5631]
          Length = 202

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 114/196 (58%), Gaps = 7/196 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y  +A+  G+R+R+++KL+Q+N   ++++    ++DLG+SPG WSQVA  +   
Sbjct: 2   RDRRDYYYWQAKKLGYRSRASFKLIQMNRTFKLIKEGDWVLDLGASPGGWSQVAVEL--- 58

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
                +VVA+DI  MEPI GV F + D    ++ E I +++    D+VLSD +    G  
Sbjct: 59  ---GAKVVAVDINPMEPIEGVHFIRGDITREETLEEI-KSVRRYYDVVLSDASPKISGKW 114

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            IDHL ++ L  +A   A E+L  GG+F+VK FQG    ++    K+ F+      P AS
Sbjct: 115 TIDHLLSIDLARSAFKIAREVLKDGGNFVVKVFQGEEIQNLFNEFKRFFRFKKFHSPKAS 174

Query: 212 RAESVEMFLLAKGFRK 227
           R +S E++ + KGF++
Sbjct: 175 RKQSAEIYFVGKGFKR 190


>gi|145550654|ref|XP_001461005.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428837|emb|CAK93608.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 10/206 (4%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R  +  SR        D Y   A+ +G+R+R+A+KL Q+N K+  L + R +VDL ++PG
Sbjct: 55  RKTKARSRL-------DKYYNLAKDQGYRSRAAFKLFQLNRKYNFLNNARTVVDLCAAPG 107

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
            W QV A+I  +++    ++ +D++ ++PI G K F  D       + +++ I    D+ 
Sbjct: 108 GWMQVCAQIMPTSST---IIGLDLVHIKPIPGCKAFTQDITTPQCVQLLKKEIPQKADVF 164

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           L D A         D      L  +A   A + L  GG F+ K F+    N ++ +  K 
Sbjct: 165 LHDGAPNVGASWAKDAYNQNDLVLSALRLASQFLKKGGVFVTKVFRSTDYNSLMWVFNKF 224

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F KV   KP+ASR  S E+F++   +
Sbjct: 225 FSKVEATKPLASRFVSAEIFVVCLDY 250


>gi|331226587|ref|XP_003325963.1| AdoMet-dependent rRNA methyltransferase SPB1 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309304953|gb|EFP81544.1| AdoMet-dependent rRNA methyltransferase SPB1 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 892

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+++Q L+S R  +DL ++PG W QVAA+   +N   
Sbjct: 14  DKYYRLAKEQGYRARSAFKLIQLNKRYQFLESARCCIDLCAAPGGWLQVAAKWMPAN--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + ++ +D++ ++PI  V     D        ++R  +     D+VL D A         D
Sbjct: 71  SLILGVDLVPIKPIPKVVTATEDIRTQSCRMWLRSELKDWKADVVLHDGAPNVGTAWVQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A EML   G F+ K F+    N +L +  + F+KV   KP +SR  
Sbjct: 131 AFSQSELVLHSLKLATEMLAQNGTFITKVFRSKDYNSLLYIFNQLFKKVEATKPPSSRNV 190

Query: 215 SVEMFLLAKGF 225
           S E+F++ +G+
Sbjct: 191 SAEIFVVCQGY 201


>gi|194899566|ref|XP_001979330.1| GG14838 [Drosophila erecta]
 gi|190651033|gb|EDV48288.1| GG14838 [Drosophila erecta]
          Length = 321

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ  E  Q+L+   R VDL ++PGSWSQV A+   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQAEETFQLLEGLTRAVDLCAAPGSWSQVLAKRMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
                      +++A+D+  M PI GVK  + D     + E I +  GG    +V+SD A
Sbjct: 65  EPLPPEEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V 
Sbjct: 125 PDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRSDRTSRLYIQLKRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVARKF 205


>gi|291278455|ref|YP_003495290.1| cell division protein methyltransferase FtsJ [Deferribacter
           desulfuricans SSM1]
 gi|290753157|dbj|BAI79534.1| cell division protein methyltransferase FtsJ [Deferribacter
           desulfuricans SSM1]
          Length = 195

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 6/196 (3%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y ++A+ EG+R+R+AYKL +IN K++I++   +++D G +PG WSQ A  I G   
Sbjct: 4   RKDGYYKKAKHEGFRSRAAYKLSEINNKYRIIKKGDKVLDAGCAPGGWSQAAISIVG--- 60

Query: 94  NNTRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
           +   VV IDILD+ PI    F   K + LD ++ +   +      D V+SD A  T G++
Sbjct: 61  DKGLVVGIDILDISPIEAKNFYFIKGNLLDKETLKKSAEICK-EYDTVISDAAPNTTGNK 119

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             DH+ ++ L      FA E+L   G+FL K F G    D +  L+  F+KV  ++P A+
Sbjct: 120 LTDHVNSLELVSTVFNFAKEVLKPEGNFLFKLFDGEDREDFIKQLRTSFKKVKIIRPDAT 179

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++++ +GF+K
Sbjct: 180 RKNSFEIYVVCQGFKK 195


>gi|194764569|ref|XP_001964401.1| GF23069 [Drosophila ananassae]
 gi|190614673|gb|EDV30197.1| GF23069 [Drosophila ananassae]
          Length = 405

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ +E   +L    R VDL ++PGSWSQV A+   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQADETFHLLDGLHRAVDLCAAPGSWSQVLAKHMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMA 144
                 +    +++A+D+  M PI GV   + D     + E I     G    +V+ D A
Sbjct: 65  EPLSEEDKKKVKIIAVDMQGMAPIEGVTQMREDISKESTAEAIINFFEGEKAQIVVCDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D    + L   A   A  +L  GG F+ K ++   T+     +K+ F+ V 
Sbjct: 125 PDSTGMHDFDSYVQIELVITAISIATYILEEGGSFVSKIYRCDKTSKAYTQMKRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++ + F
Sbjct: 185 VFKPSASRNSSIEAFVIGRQF 205


>gi|58865606|ref|NP_001012014.1| putative rRNA methyltransferase 3 [Rattus norvegicus]
 gi|73621846|sp|Q5RJT2|RRMJ3_RAT RecName: Full=Putative rRNA methyltransferase 3; AltName:
           Full=Protein ftsJ homolog 3; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|55778366|gb|AAH86512.1| FtsJ homolog 3 (E. coli) [Rattus norvegicus]
          Length = 829

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F +V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFHRVQATKPQASRHESAEIFVVCQGF 200


>gi|195059568|ref|XP_001995663.1| GH17878 [Drosophila grimshawi]
 gi|193896449|gb|EDV95315.1| GH17878 [Drosophila grimshawi]
          Length = 836

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 4/193 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G+R+R+A+KL+Q+N K+  LQ ++  VDL ++PG W QVA +    ++
Sbjct: 11  RKDKFYQLAKETGFRSRAAFKLIQLNRKYGFLQESQVCVDLCAAPGGWMQVAKQNMPVSS 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRK 152
               V+ +D+  +  I G      D       + +  +      D+VL D A     +  
Sbjct: 71  I---VIGVDLFPIRAIPGCISLVEDITTEKCRQSLTMELQSWKVDVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  + + L   A   A + +  GG F+ K F+    N +L +LK+ F+KV   KP ASR
Sbjct: 128 YDAYQQICLTLNALKLATQFMRKGGWFVTKVFRSKDYNSLLWVLKQLFKKVHATKPSASR 187

Query: 213 AESVEMFLLAKGF 225
            ES E+F++ + +
Sbjct: 188 KESAEIFVVCQYY 200


>gi|300121815|emb|CBK22389.2| unnamed protein product [Blastocystis hominis]
          Length = 840

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+RARSA+KL+Q+N +   L     ++DL ++PG W QVAA+     +  
Sbjct: 10  DKWYALAKQQGYRARSAFKLIQLNRQFNFLSKAHVLIDLCAAPGGWCQVAAKQMPIEST- 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
             ++ +D+L ++PI  VK F+ D   L   + I R+  G + D+VL D A    G    D
Sbjct: 69  --IIGVDLLPIKPIHNVKTFQEDITTLSCRDVIKRELHGKHADVVLHDGAPNVGGGWSKD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   +   A+E +  G  F+ K F+    + ++ +  + F+KV   KP ASR E
Sbjct: 127 AFDQNSLVLHSLRLAVEFMTKGATFVTKVFRSADYHALIYIFNQLFEKVQATKPAASRTE 186

Query: 215 SVEMFLLAKGFR 226
           S E+F++ + ++
Sbjct: 187 SAEIFVVCQNYK 198


>gi|302698005|ref|XP_003038681.1| hypothetical protein SCHCODRAFT_64580 [Schizophyllum commune H4-8]
 gi|300112378|gb|EFJ03779.1| hypothetical protein SCHCODRAFT_64580 [Schizophyllum commune H4-8]
          Length = 869

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 3/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+ +G+RARSA+KL+Q+N+K+  L++ R  +DL ++PG W QVA++   +N+  
Sbjct: 14  DKYYKLAKEQGYRARSAFKLIQLNKKYNFLETARCCIDLCAAPGGWLQVASKHMPNNSVI 73

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
             V  +D++ ++PI  V  F  D         +R  +     D+VL D A         D
Sbjct: 74  --VAGVDLVPIKPIPRVVTFAADITTTHCRNLLRGELKDWKADVVLHDGAPNVGTAWIQD 131

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A+E L  GG F+ K F+    N+++ +  + F KV   KP +SR  
Sbjct: 132 AYTQSELVLMSLKLAVEFLVKGGTFVTKVFRSTDYNNLIWVFSQLFGKVEATKPPSSRNV 191

Query: 215 SVEMFLLAKGF 225
           S E+F++ + F
Sbjct: 192 SAEIFVVCRDF 202


>gi|300124014|emb|CBK25285.2| unnamed protein product [Blastocystis hominis]
          Length = 840

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+RARSA+KL+Q+N +   L     ++DL ++PG W QVAA+     +  
Sbjct: 10  DKWYALAKQQGYRARSAFKLIQLNRQFNFLSKAHVLIDLCAAPGGWCQVAAKQMPIEST- 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRKID 154
             ++ +D+L ++PI  VK F+ D   L   + I R+  G + D+VL D A    G    D
Sbjct: 69  --IIGVDLLPIKPIHNVKTFQEDITTLSCRDVIKRELHGKHADVVLHDGAPNVGGGWSKD 126

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                SL   +   A+E +  G  F+ K F+    + ++ +  + F+KV   KP ASR E
Sbjct: 127 AFDQNSLVLHSLRLAVEFMTKGATFVTKVFRSADYHALIYIFNQLFEKVQATKPAASRTE 186

Query: 215 SVEMFLLAKGFR 226
           S E+F++ + ++
Sbjct: 187 SAEIFVVCQNYK 198


>gi|324523982|gb|ADY48339.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 248

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           R      K    +  +  ++ R + D +V +A+   +RARSA+KL++IN +++ +     
Sbjct: 25  RRFANNTKTAKKRAVTTKYIRRQLRDEFVLKAREHSYRARSAFKLIEINNRYKFINRGAV 84

Query: 71  IVDLGSSPGSWSQVAARI-TGSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFI 128
           +VD+GS+PGSW QV A +    +  +  V+ ID+  M P+ GV      D    ++   I
Sbjct: 85  VVDVGSAPGSWCQVIAELVHKEHHKDAYVLGIDLQPMVPLAGVDLITMADITSPETHRRI 144

Query: 129 RQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM-----LNIGGDFLVK 182
           +Q + G   D V+SDMA    G + +DH R ++LCE    F         L  GG FL K
Sbjct: 145 KQYLSGRSVDAVVSDMAPNPSGDKTVDHERIIALCEQLLSFCCGNAAVIPLKKGGTFLCK 204

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            + G     ++  LK +F  V ++KP ASR  S E++LLA   +
Sbjct: 205 IWDGQRRLQLIESLKGYFHIVHNIKPDASRDHSAELYLLAMKRK 248


>gi|301778303|ref|XP_002924561.1| PREDICTED: putative rRNA methyltransferase 3-like [Ailuropoda
           melanoleuca]
 gi|281351660|gb|EFB27244.1| hypothetical protein PANDA_013937 [Ailuropoda melanoleuca]
          Length = 831

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|164656501|ref|XP_001729378.1| hypothetical protein MGL_3413 [Malassezia globosa CBS 7966]
 gi|159103269|gb|EDP42164.1| hypothetical protein MGL_3413 [Malassezia globosa CBS 7966]
          Length = 902

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 4/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N+K+  L++    +DL ++PG W QVA++    N   
Sbjct: 14  DKFYWLAKEQGYRSRAAFKLVQLNKKYNFLENAHCCIDLCAAPGGWLQVASKHMPPN--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + ++ +D++ ++PI     F  D       E +++ +     D+VL D A         D
Sbjct: 71  SLILGVDLVAIKPIPRCITFAEDINSYRCREQLQEHMKDWKADVVLHDGAPNVGTAWVQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A+E L  GG F+ K F+    N+++ + ++ F  V   KP +SR  
Sbjct: 131 AYAQNELTLQSLRLAVEFLVPGGTFVTKVFRSKDYNNLMWVFQQLFHHVEATKPPSSRNV 190

Query: 215 SVEMFLLAKGFR 226
           S E+F++ + F+
Sbjct: 191 SAEIFVVCQRFK 202


>gi|45358169|ref|NP_987726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
           maripaludis S2]
 gi|74555203|sp|Q6LZL8|RLME_METMP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|44920926|emb|CAF30162.1| 23 S ribosomal RNA methyltransferase related [Methanococcus
           maripaludis S2]
          Length = 258

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W+ +  ND Y   A+   +R+R+ YKL Q+NEK  +++    +VDLG +PG W Q A 
Sbjct: 6   KRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            I G +     +V ID+  ++P+    +   K D    +  +  +  +   PD+++ D +
Sbjct: 66  DIVGEDGF---IVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPEKPDVIICDAS 122

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +DH+R++ L   A   A +ML  GG+F+VK FQG      + L+ ++F K  
Sbjct: 123 PNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR ES E++++ K F
Sbjct: 183 TTKPRASRDESAEVYVIGKRF 203


>gi|296109210|ref|YP_003616159.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocaldococcus
           infernus ME]
 gi|295434024|gb|ADG13195.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocaldococcus
           infernus ME]
          Length = 245

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 9/206 (4%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           ++W+ +   DPY + A+   +R+R+ +KLLQINEK   L+  + ++DLG +PG W + A 
Sbjct: 6   KNWIMKRKRDPYYRLAKKLKYRSRAYFKLLQINEKFHFLKPKQAVLDLGCAPGGWMEAAK 65

Query: 87  RITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGG----NPDLVL 140
            I G   +   +V ID+  ++P     +   + DF    + + I++ +        D+V+
Sbjct: 66  EIVG---DQGLIVGIDLQKVKPFKDKNLIPIQGDFTKERNLKKIKEILRERGREKFDVVI 122

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD +    GH  +DH R++ L + A   A EML   G F+ K F G   +++  L KK+F
Sbjct: 123 SDASPNISGHWAVDHARSVELVKTALQIATEMLRKDGHFVAKVFYGDMVDELKNLAKKYF 182

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            KV   KP ASR ES E++L+AK F+
Sbjct: 183 DKVYLTKPRASRKESSEIYLIAKRFK 208


>gi|195157878|ref|XP_002019821.1| GL12002 [Drosophila persimilis]
 gi|194116412|gb|EDW38455.1| GL12002 [Drosophila persimilis]
          Length = 316

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ  E   +L    R VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQAEETFHLLDGVTRAVDLCAAPGSWSQVLSKHMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMA 144
                      +++A+D+  M PI GV   + D     +    I    G    LV+SD A
Sbjct: 65  EPRSPEEREKVKIIAVDLQGMAPIDGVHQLRADITKESTAQAIIEYFEGQKAQLVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG  + K ++   T+ +   L++ F+ V 
Sbjct: 125 PDSTGMHDFDVYMQGELLLSALSISTFILETGGSLVAKIYRADNTSRLYLQLQRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVARQF 205


>gi|225711000|gb|ACO11346.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
          Length = 251

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 113/204 (55%), Gaps = 7/204 (3%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++A+ EG+RARSAYKLL++++K +IL+ N  +++ G +PG+W+QV 
Sbjct: 49  SSSWIRRQAKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVL 108

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN--PDLVLSD 142
                S      +++ D+LD EP+         DF    + + I   +G +   DLVLSD
Sbjct: 109 TERVSS----GMIISCDLLDYEPVGHAIILPNSDFTSPSTQDTILSHLGKSSGFDLVLSD 164

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G  +++H + ++L   AT FAL     G  FL K + G      L  L++ +  
Sbjct: 165 MAPNASGMAELNHGQILNLSYEATKFALRHSKPGAAFLTKLWNGNGLEGYLTDLRRFYNN 224

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V  VKP +SR ES E+F+ A  F+
Sbjct: 225 VQVVKPKSSRKESAELFIYASKFK 248


>gi|237840609|ref|XP_002369602.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
           gondii ME49]
 gi|211967266|gb|EEB02462.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
           gondii ME49]
          Length = 981

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 106/198 (53%), Gaps = 5/198 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITG 90
           +   D +   A+ +G+RARSA+KLLQ++++ ++ + +   +VDL ++PG W QVAA+   
Sbjct: 14  KQRLDKFYHLAKEQGYRARSAFKLLQLSQRFRLFEKSCASVVDLCAAPGGWLQVAAKHC- 72

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIG 149
                T +V +D++ + PI GV+ F  D         +R+ +  G  DLVL D +     
Sbjct: 73  --PVATTIVGVDLVPISPIRGVQTFTGDITTPQCAAKLRKLVKFGEVDLVLHDGSPNMGT 130

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L   A   A ++L  G  F+ K F+      +L +L+  F++V   KP 
Sbjct: 131 DWSVDAFSQNVLVLCAAKLACQLLAAGATFVSKVFRSADYAALLYVLQTLFERVDATKPQ 190

Query: 210 ASRAESVEMFLLAKGFRK 227
           ASRA S E+F++ +GFRK
Sbjct: 191 ASRAVSAEIFVVCRGFRK 208


>gi|126308657|ref|XP_001376931.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 839

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGFRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVA++       ++ +V +D++ ++PI  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVASKFM---PVSSLIVGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F+ V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRHVQATKPQASRQESAEIFVICQGF 200


>gi|145551003|ref|XP_001461179.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429012|emb|CAK93806.1| unnamed protein product [Paramecium tetraurelia]
          Length = 902

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 10/206 (4%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R  +  SR        D Y   A+ +G+R+R+A+KL Q+N K+  L + R +VDL ++PG
Sbjct: 3   RKTKARSRL-------DKYYNLAKDQGYRSRAAFKLFQLNRKYNFLNNARTVVDLCAAPG 55

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
            W QV A+I      ++ ++ +D++ ++PI G K F  D       + +++ I    D+ 
Sbjct: 56  GWMQVCAQIM---PTSSIIIGLDLVHIKPIPGCKAFTQDITTPQCVQLLKKEIPQKADVF 112

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           L D A         D      L  +A   A + L  GG F+ K F+    N ++ +  K 
Sbjct: 113 LHDGAPNVGASWAKDAYNQNDLVLSALRLASQFLKKGGVFVTKVFRSTDYNSLMWVFNKF 172

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGF 225
           F KV   KP+ASR  S E+F++   +
Sbjct: 173 FSKVEATKPLASRFVSAEIFVVCLDY 198


>gi|221503392|gb|EEE29090.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 981

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 106/198 (53%), Gaps = 5/198 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITG 90
           +   D +   A+ +G+RARSA+KLLQ++++ ++ + +   +VDL ++PG W QVAA+   
Sbjct: 14  KQRLDKFYHLAKEQGYRARSAFKLLQLSQRFRLFEKSCASVVDLCAAPGGWLQVAAKHC- 72

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIG 149
                T +V +D++ + PI GV+ F  D         +R+ +  G  DLVL D +     
Sbjct: 73  --PVATTIVGVDLVPISPIRGVQTFTGDITTPQCAAKLRKLVKFGEVDLVLHDGSPNMGT 130

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L   A   A ++L  G  F+ K F+      +L +L+  F++V   KP 
Sbjct: 131 DWSVDAFSQNVLVLCAAKLACQLLAAGATFVSKVFRSADYAALLYVLQTLFERVDATKPQ 190

Query: 210 ASRAESVEMFLLAKGFRK 227
           ASRA S E+F++ +GFRK
Sbjct: 191 ASRAVSAEIFVVCRGFRK 208


>gi|257052864|ref|YP_003130697.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhabdus utahensis
           DSM 12940]
 gi|256691627|gb|ACV11964.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhabdus utahensis
           DSM 12940]
          Length = 256

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 110/191 (57%), Gaps = 2/191 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  RA+ +G+RARSA+KL Q++E   +L + R +VDLG++PG W QVAA   G    
Sbjct: 4   KDKYYNRAKQQGYRARSAFKLRQLDETADLLGAERTVVDLGAAPGGWLQVAAERLGDGGR 63

Query: 95  NTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
              V    I D+E P + V+  + D  D  + E I  A+G   +LVLSDMA    G   +
Sbjct: 64  VVGVDRQRIDDLEEPDVPVETIRGDITDESTVEAITDAVG-EANLVLSDMAPNVTGEYDL 122

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R++ L   A   +L++L  GGD +VK F G   +D+   +++ F+ V  V+P ASR 
Sbjct: 123 DHARSVHLARQAFEVSLDVLGAGGDLVVKVFDGRDLDDLKTDIEEEFEYVREVRPDASRD 182

Query: 214 ESVEMFLLAKG 224
            S E++L+AK 
Sbjct: 183 SSSELYLVAKH 193


>gi|320170532|gb|EFW47431.1| FtsJ cell division protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1045

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + + A+  G+R+R+A+KL+Q+N K+  L ++R ++DL ++PG W QVA++      
Sbjct: 11  RRDKFYKLAKEAGYRSRAAFKLIQLNRKYNFLGTSRVLLDLCAAPGGWLQVASK---HMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRK 152
            ++ ++ +D + ++PI  V     D         IR+   G   D VL D A        
Sbjct: 68  VSSVIIGVDRVQIKPIHNVICLTEDITTDKCRAAIRKETKGWKVDCVLHDGAPNVGTSWT 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D     +L   +   A E L  GG ++ K F+    N ++ + ++ F+KV   KP ASR
Sbjct: 128 QDAYTQAALVLMSLKIACEHLGQGGWYITKVFRSADYNALVWVFQQFFKKVHATKPQASR 187

Query: 213 AESVEMFLLAKGFRK 227
            ES E+F++ +G+ K
Sbjct: 188 NESAEIFVVCQGYNK 202


>gi|198424725|ref|XP_002124852.1| PREDICTED: similar to cell division protein ftsj [Ciona
           intestinalis]
          Length = 273

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/231 (36%), Positives = 127/231 (54%), Gaps = 15/231 (6%)

Query: 12  GLTQKVKNRSCQGSSRDWLN-----------RHINDPYVQRAQLEGWRARSAYKLLQINE 60
           G   ++K R  +  S++++            R ++DP+V+   LEG+R RSAYKL+ I E
Sbjct: 38  GQAVEIKKRKIRVGSKNFMEIPIKGTIEYVSRQLSDPFVKMRHLEGYRCRSAYKLMDIVE 97

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           KH +L+   ++VDLG++PGSWSQVAA    +  ++  V+A+D+L   P+ GV     DF 
Sbjct: 98  KHDLLKPGMKVVDLGAAPGSWSQVAAERVINKDDDGLVIAVDLLKFPPLDGVTQITGDFT 157

Query: 121 DLDSWEFIRQAIGGN----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
             ++ + I+  +G       D+VL D A    G +  DHL  + +  AAT F L+ML   
Sbjct: 158 KKETQDEIKALLGTEENRFVDIVLCDAAPSASGFKNKDHLAIVQIIAAATNFTLKMLANH 217

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G+FL K   G  T  I   L  HF  V  +KP ASR+ES E F+L K + +
Sbjct: 218 GNFLFKILDGTETMKIKKFLSLHFMSVASLKPKASRSESAEHFILCKNYNR 268


>gi|291406359|ref|XP_002719522.1| PREDICTED: FtsJ homolog 3 [Oryctolagus cuniculus]
          Length = 836

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+R+RSA+KL+Q+N + Q LQ  R ++DL +
Sbjct: 1   MGKKGKVGKSRR-------DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+       ++ +V +D++ ++P+  V   + D       + +R+ +    
Sbjct: 54  APGGWLQVAAKFM---PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L   A   A + L  GG F+ K F+      +L +
Sbjct: 111 VDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGYFITKVFRSRDYQPLLWI 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 171 FQQLFRRVQATKPQASRHESAEIFVVCQGF 200


>gi|95007320|emb|CAJ20540.1| methyltransferase, putative [Toxoplasma gondii RH]
 gi|221482814|gb|EEE21145.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 981

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 106/198 (53%), Gaps = 5/198 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITG 90
           +   D +   A+ +G+RARSA+KLLQ++++ ++ + +   +VDL ++PG W QVAA+   
Sbjct: 14  KQRLDKFYHLAKEQGYRARSAFKLLQLSQRFRLFEKSCASVVDLCAAPGGWLQVAAKHC- 72

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIG 149
                T +V +D++ + PI GV+ F  D         +R+ +  G  DLVL D +     
Sbjct: 73  --PVATTIVGVDLVPIAPIRGVQTFTGDITTPQCAAKLRKLVKFGEVDLVLHDGSPNMGT 130

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D      L   A   A ++L  G  F+ K F+      +L +L+  F++V   KP 
Sbjct: 131 DWSVDAFSQNVLVLCAAKLACQLLAAGATFVSKVFRSADYAALLYVLQTLFERVDATKPQ 190

Query: 210 ASRAESVEMFLLAKGFRK 227
           ASRA S E+F++ +GFRK
Sbjct: 191 ASRAVSAEIFVVCRGFRK 208


>gi|58263807|ref|XP_569180.1| RNA methyltransferase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108256|ref|XP_777079.1| hypothetical protein CNBB3110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|73621937|sp|Q5KM86|SPB1_CRYNE RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|50259764|gb|EAL22432.1| hypothetical protein CNBB3110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223830|gb|AAW41873.1| RNA methyltransferase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 908

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RARSA+KL+ +N K+ +L   R  +DL ++PG W QVA +        
Sbjct: 14  DKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMPKG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
           + ++ +D+  ++P+  V  F  D       + +RQ +     DLVL D A         D
Sbjct: 71  SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A E L  GG F+ K F+    N +L +  + F+ V   KP +SR  
Sbjct: 131 AFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNV 190

Query: 215 SVEMFLLAKGF 225
           S E+F++ + F
Sbjct: 191 SAEIFVVCRDF 201


>gi|321251839|ref|XP_003192196.1| RNA methyltransferase [Cryptococcus gattii WM276]
 gi|317458664|gb|ADV20409.1| RNA methyltransferase, putative [Cryptococcus gattii WM276]
          Length = 907

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+RARSA+KL+ +N K+ +L   R  +DL ++PG W QVA +        
Sbjct: 14  DKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMPKG--- 70

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
           + ++ +D+  ++P+  V  F  D       + +RQ +     DLVL D A         D
Sbjct: 71  SLIIGVDLNAIKPLPHVTTFVSDITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQD 130

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A E L  GG F+ K F+    N +L +  + F+ V   KP +SR  
Sbjct: 131 AFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNV 190

Query: 215 SVEMFLLAKGF 225
           S E+F++ + F
Sbjct: 191 SAEIFVVCRDF 201


>gi|83316088|ref|XP_731073.1| cell division protein FtsJ [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490998|gb|EAA22638.1| FtsJ cell division protein, putative [Plasmodium yoelii yoelii]
          Length = 258

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 126/212 (59%), Gaps = 4/212 (1%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
            K+ N+    SS+ W+ R I D YV +A+ E +R+R+A+KL++++ K+  L+ N+ I+D+
Sbjct: 27  PKIYNKKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDI 85

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           GS PGSW QV    T +  N   ++AID   M+P+  V F K +    +  + +++ +  
Sbjct: 86  GSYPGSWCQVILERTKNYTNE--IIAIDKKIMDPLPNVHFIKAEIGKDNVDDQLKEVLKD 143

Query: 135 NP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D++LSD A   IG++  DHL +  L  + T F  + +NIGG ++VK + G  T+++ 
Sbjct: 144 KKIDIILSDAAVACIGNKIDDHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTDNLK 203

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             LK  FQ V   KP ASR+ES E++L+ + F
Sbjct: 204 TYLKTIFQYVNTAKPKASRSESREIYLVCRNF 235


>gi|328772897|gb|EGF82934.1| hypothetical protein BATDEDRAFT_831 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 834

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KL+Q+N+K+  L+  + +VDL ++PG W QVA +        
Sbjct: 13  DKYYHMAKEQGFRARSAFKLIQLNKKYSFLEKAKVVVDLCAAPGGWLQVAQKYM---PKP 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
           + ++ +D+  ++PI GV     D       + IR  +     D+ L D A         D
Sbjct: 70  SLIIGLDLAPIKPISGVITHVEDITTSKCRQTIRSELKDWKVDVFLHDGAPNVGISWLQD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  +A   A E L   G F+ K F+    N +L + ++ F+KV   KP +SR  
Sbjct: 130 AFGQSELTLSALKLATEFLMPNGTFVTKVFRSKDYNKLLWVFQQLFRKVEATKPASSRNV 189

Query: 215 SVEMFLLAKGF 225
           S E+F++ + +
Sbjct: 190 SAEIFVVCREY 200


>gi|209876181|ref|XP_002139533.1| tRNA (uridine-2'-O-)-methyltransferase protein [Cryptosporidium
           muris RN66]
 gi|209555139|gb|EEA05184.1| tRNA (uridine-2'-O-)-methyltransferase protein, putative
           [Cryptosporidium muris RN66]
          Length = 264

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA-RITGSNANNTRVVA 100
           A+ EG+RARSAYKLLQ+++ + I +   R VDL ++PGSWSQV + ++  +  NN  +V+
Sbjct: 16  AKQEGYRARSAYKLLQVDQYYPIFKGVNRAVDLCAAPGSWSQVLSQKLNCNENNNALIVS 75

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTM 159
           +D+ DM PI GV   K D    ++ + I    GG   DLVL D A    G   ID     
Sbjct: 76  VDLQDMAPIEGVNIIKGDITSQNTVDIILDYFGGEKADLVLCDGAPDVTGFHDIDEFIQN 135

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  +A     ++L  GG F+ K F+G     I   +  +F+ V   KP +SR  S+E F
Sbjct: 136 QLLLSALSITTKLLCDGGSFVAKIFRGENIAFIYQQMFYYFEYVDCCKPASSRNSSLEAF 195

Query: 220 LLAKGF 225
           ++ + F
Sbjct: 196 IVCRNF 201


>gi|253742114|gb|EES98965.1| FtsJ-like protein [Giardia intestinalis ATCC 50581]
          Length = 268

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 5/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +++   D Y + A+ EGWRARSAYKLLQ++ ++ +     R VDL ++PGSWSQV +R  
Sbjct: 1   MSKDKRDIYYRLAKDEGWRARSAYKLLQLDAQYDLFSGVTRAVDLCAAPGSWSQVLSRKL 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
             +A    ++++D+  M P+  V   + D    +  + I +   G    LV+ D A    
Sbjct: 61  PDDAI---IISVDLAPMAPLPRVIQIQGDITRKEVADKIIELCRGEMCQLVVCDGAPDVT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK-KHFQKVIHVK 207
           G   +D      L + A   A  +L  GG F+ K F+G     +L       F+ V   K
Sbjct: 118 GVHDLDEYVQAGLVDHAMTLARRILAPGGTFVSKVFRGECLESLLRRNALSFFKHVDVSK 177

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASRA S+E FL+   +
Sbjct: 178 PDASRASSMECFLVCTEY 195


>gi|134079334|emb|CAK96963.1| unnamed protein product [Aspergillus niger]
          Length = 365

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 110/262 (41%), Gaps = 67/262 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPDKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR--------------------------------------------VVAI 101
           +R+     +  R                                            +V+I
Sbjct: 65  SRVLIKGESFGRRAWVEKKRKEKEALDRVRNGDNTTTVTSSEDTDMAELKPRKNVKIVSI 124

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP------------------DLVLSDM 143
           D+  M P+ G+   K D     +   + +A+                      DLV+SD 
Sbjct: 125 DLQPMAPLEGITTLKADITHPSTIPLLLRALDPEAYDSSTSSTPSAIRPPHPVDLVISDG 184

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  +A   AL +L  GG F+ K F+G   + +   L+  F+KV
Sbjct: 185 APDVTGLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRGRDVDLLYAQLRTVFEKV 244

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SRA S+E F++ +GF
Sbjct: 245 SVAKPRSSRASSLEAFVVCEGF 266


>gi|145546330|ref|XP_001458848.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426670|emb|CAK91451.1| unnamed protein product [Paramecium tetraurelia]
          Length = 244

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 10/205 (4%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S Q  ++ W   HIND YV+ ++    R+R+A+KL+QINEK+ I + N+ ++DLG++PGS
Sbjct: 13  SSQKKTKRWYMEHINDFYVKESKRLQLRSRAAFKLMQINEKYAIYKPNQYVLDLGAAPGS 72

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
           WSQV +          +V+AID+L++ PI  VKF + D +D      IRQ      D+VL
Sbjct: 73  WSQVVSEK-------GKVMAIDLLEVSPIQNVKFIQGDIMDKQIMNQIRQH---KFDVVL 122

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDMA    G  + DH    +L + A   +   L   G+ ++KTF G          +  F
Sbjct: 123 SDMAPNVSGEHEADHQGITALNQTALLLSTFTLKTNGNLVMKTFVGSEEKLNYDFFRLFF 182

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           ++    KP++S+ ES E+F + KGF
Sbjct: 183 KEFYREKPLSSKQESSELFYVGKGF 207


>gi|302843764|ref|XP_002953423.1| hypothetical protein VOLCADRAFT_63770 [Volvox carteri f.
           nagariensis]
 gi|300261182|gb|EFJ45396.1| hypothetical protein VOLCADRAFT_63770 [Volvox carteri f.
           nagariensis]
          Length = 440

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 11/211 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  ++ +G +R        D Y   A+ +G+R+R+A+KL+Q+N K+  L   R ++DL +
Sbjct: 1   MAKKAKKGKNRL-------DKYYHLAKEQGYRSRAAFKLIQLNRKYNFLGKCRALLDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGN 135
           +PG W QVAA+        + ++ +D+  ++PI GVK    D         I R+A    
Sbjct: 54  APGGWLQVAAKTMPVG---SLILGVDLAPIKPIRGVKTLVQDITTQQCRSAIKREAGNAK 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL D A    G    +     +L   +   A++ L   G F+ K F+    N +L  
Sbjct: 111 MDVVLHDGAPNVGGAWASEAYNQSTLVLDSLKLAVDTLAPKGTFVTKIFRSKDYNALLYA 170

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + F+KV   KP ASR  S E+F++  GF+
Sbjct: 171 FNQLFEKVEATKPAASRNASAEIFVVCIGFK 201


>gi|324504254|gb|ADY41837.1| RRNA methyltransferase 3 [Ascaris suum]
          Length = 800

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+  G+R+R+A+KL+Q+N++ + LQ +R ++DL ++PG W QVAA+    
Sbjct: 9   KQRKDKFYHLAKEAGYRSRAAFKLIQLNKRFEFLQKSRALIDLCAAPGGWLQVAAQNMPV 68

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
           ++     + ID++ ++PI      + D     + + I++ +     D VL D A     +
Sbjct: 69  SSVR---IGIDLVPIKPINSCITLQGDITTEKARQMIKKELQTWEADCVLHDGAPNVGLN 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D  +   L  +A   A ++L   G F+ K F+    + ++ + +K F+KV   KP A
Sbjct: 126 WLHDAFQQNCLTLSALRLATQVLAKNGCFVTKVFRSNDYHSLISVFEKLFKKVHVWKPAA 185

Query: 211 SRAESVEMFLLAKGFRK 227
           SR ES E+F++ + + K
Sbjct: 186 SRLESAEIFVVCEKYLK 202


>gi|66811534|ref|XP_639947.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
 gi|74854041|sp|Q54NX0|RRMJ3_DICDI RecName: Full=rRNA methyltransferase 3 homolog; AltName: Full=rRNA
           (uridine-2'-O-)-methyltransferase 3
 gi|60466892|gb|EAL64936.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
          Length = 833

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 4/203 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G  +  L +   D +   A+ +G+R+R+A+KL+Q+N+K+  L + +  +DL ++PG W Q
Sbjct: 2   GQKKKKLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQ 61

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
           VA++        + +V +D++ +  +        D         I++A+     D+ L D
Sbjct: 62  VASKYM---PVQSLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDVCLHD 118

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A         D  +   L   A   A E L  GG F+ K F+G   N ++ +  K F+K
Sbjct: 119 GAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNKLFKK 178

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP +SR  S E+F++ +GF
Sbjct: 179 VESTKPPSSRNASAEIFVVCQGF 201


>gi|292654359|ref|YP_003534256.1| ribosomal RNA large subunit methyltransferase J [Haloferax volcanii
           DS2]
 gi|291372926|gb|ADE05153.1| ribosomal RNA large subunit methyltransferase J [Haloferax volcanii
           DS2]
          Length = 259

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 104/195 (53%), Gaps = 6/195 (3%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+ EG+RARSAYKL Q++    +      +VDLG++PG W QV +   G   
Sbjct: 3   RKDHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVVSEEVG--- 59

Query: 94  NNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGH 150
           ++ +VV +D+  +  I    V+  + D  + ++ E +   IG    D V+SDMA    G 
Sbjct: 60  DHGKVVGVDLQRIRGIDRDNVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTGE 119

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +DH R++ L   A   A E+L  GGDF VK F G    D+   +++ FQ V  ++P A
Sbjct: 120 YSLDHARSVYLARQAFEVAQELLATGGDFAVKVFDGPDVADLRADMEREFQYVRSMRPDA 179

Query: 211 SRAESVEMFLLAKGF 225
           SR  S E +L+ K F
Sbjct: 180 SRDSSSEQYLVGKHF 194


>gi|150864104|ref|XP_001382804.2| Mitochondrial rRNA Methyltransferase [Scheffersomyces stipitis CBS
           6054]
 gi|149385360|gb|ABN64775.2| Mitochondrial rRNA Methyltransferase [Scheffersomyces stipitis CBS
           6054]
          Length = 263

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 25/233 (10%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSP 78
           R    SS  WLNR +NDP+ ++++ + +R+R+AYKL++I++K+ +  +    I+DLG +P
Sbjct: 22  RYKSKSSTRWLNRQVNDPHTKQSKSDHYRSRAAYKLIEIDQKYSVFNRKTENILDLGFAP 81

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN--- 135
           G+W+QVA          + ++ +D++      G  F + + L   + + IR         
Sbjct: 82  GAWTQVAVERMKKLGVKSSILGVDLILSTAPKGSHFIQGNILSKKTHDDIRDFFTRKQSE 141

Query: 136 ---------------------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
                                 DLVLSDM   T G +  DH  +M LC+ A   A E+L 
Sbjct: 142 IVKESEGSEIEIIDQKRKMLTVDLVLSDMMSNTSGIKDNDHYASMDLCDGAIILACEVLK 201

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  ++K + G     +   ++  F+KV   KP A R ES EM+++  G ++
Sbjct: 202 EGGSLVMKFYTGKEDQVLQERMRLLFEKVYRFKPQACRNESREMYIIGVGKKR 254


>gi|67522589|ref|XP_659355.1| hypothetical protein AN1751.2 [Aspergillus nidulans FGSC A4]
 gi|40744881|gb|EAA64037.1| hypothetical protein AN1751.2 [Aspergillus nidulans FGSC A4]
          Length = 420

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 65/260 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR-------------------------------------------VVAID 102
           +R+     +  R                                           +V+ID
Sbjct: 65  SRVLIKGESFGRRSWVEKRRKEQAALENLDGDAPAANQGADITDSTALKPRKNVKIVSID 124

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-----------------DLVLSDMAY 145
           +  M P+ G+   + D     +   + QA+                     DLV+SD A 
Sbjct: 125 LQPMAPLQGITTLQADITHPSTIPLLLQALDPEAYDSTSSTPHAVRQPHPVDLVISDGAP 184

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  +A   AL +L  GG F+ K F+    + +   L+  F++V  
Sbjct: 185 DVTGLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRDRDVDLLYSQLRTVFERVSV 244

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SRA S+E F++ +GF
Sbjct: 245 AKPRSSRASSLEAFIVCEGF 264


>gi|56416831|ref|YP_153905.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222475196|ref|YP_002563612.1| cell division protein (ftsJ) [Anaplasma marginale str. Florida]
 gi|254995031|ref|ZP_05277221.1| cell division protein (ftsJ) [Anaplasma marginale str. Mississippi]
 gi|255003177|ref|ZP_05278141.1| cell division protein (ftsJ) [Anaplasma marginale str. Puerto Rico]
 gi|255004308|ref|ZP_05279109.1| cell division protein (ftsJ) [Anaplasma marginale str. Virginia]
 gi|269958781|ref|YP_003328569.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
           Israel]
 gi|81359063|sp|Q5PAN0|RLME_ANAMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809546|sp|B9KIP4|RLME_ANAMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|56388063|gb|AAV86650.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222419333|gb|ACM49356.1| cell division protein (ftsJ) [Anaplasma marginale str. Florida]
 gi|269848611|gb|ACZ49255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
           Israel]
          Length = 201

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/187 (40%), Positives = 109/187 (58%), Gaps = 4/187 (2%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
            A+  G+R+RSAYKL+ I+ K ++LQ  R ++DLGS PG W+QVAA           VVA
Sbjct: 2   LAKKHGYRSRSAYKLIDIDCKFKLLQRGRYVLDLGSCPGGWAQVAAERVAEGGKAH-VVA 60

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTM 159
           +D+  ME I  V F + D     S E +R A+     D+VLSDMA  + GHR++DH   +
Sbjct: 61  VDMAPMERIPNVDFVQCDV--EHSPELLRAALQDRKFDVVLSDMAPKSCGHRQVDHANII 118

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           +LCE A   A+E L  GG F+ K  QG    +    L+ +F  V + KP +SR+ES E++
Sbjct: 119 NLCEMALDLAVEFLRSGGSFVTKILQGEYEQEFRRSLQYYFASVTYFKPKSSRSESSEIY 178

Query: 220 LLAKGFR 226
           L+   F+
Sbjct: 179 LVGTKFK 185


>gi|70991863|ref|XP_750780.1| tRNA methyltransferase [Aspergillus fumigatus Af293]
 gi|66848413|gb|EAL88742.1| tRNA methyltransferase, putative [Aspergillus fumigatus Af293]
 gi|159124342|gb|EDP49460.1| tRNA methyltransferase, putative [Aspergillus fumigatus A1163]
          Length = 426

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 68/263 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPDKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR---------------------------------------------VVA 100
           +R+     +  R                                             +V+
Sbjct: 65  SRVLIKGESFGRRAWIEKKRKESEALKRIDHGSESESPAEEERKDDIAQLKPRRNVKIVS 124

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP------------------DLVLSD 142
           ID+  M P+ G+   + D     +   + +A+                      DLV+SD
Sbjct: 125 IDLQPMAPLEGITTLQADITHPSTIPLLLRALDPEAYDSASSPTPSAIQQPHPVDLVISD 184

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      L  +A   A+ +L  GG F+ K F+G   + I   L+  F+K
Sbjct: 185 GAPDVTGLHDLDIYVQSQLLYSALNLAVGVLRPGGKFVAKIFRGRDVDLIYAQLRTVFEK 244

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP +SRA S+E F++ +GF
Sbjct: 245 VSVAKPRSSRASSLEAFVVCEGF 267


>gi|119470072|ref|XP_001258008.1| tRNA methyltransferase, putative [Neosartorya fischeri NRRL 181]
 gi|119406160|gb|EAW16111.1| tRNA methyltransferase, putative [Neosartorya fischeri NRRL 181]
          Length = 426

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 68/263 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR---------------------------------------------VVA 100
           +R+     +  R                                             +V+
Sbjct: 65  SRVLIKGESFGRRAWIEKKRKESEALRRIDHGSESESPAEEEGKDDVAQLKPRRNVKIVS 124

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP------------------DLVLSD 142
           ID+  M P+ G+   + D     +   + +A+                      DLV+SD
Sbjct: 125 IDLQPMAPLEGITTLQADITHPSTIPLLLRALDPEAYDSASSSTPSAIQQPHPVDLVISD 184

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A    G   +D      L  +A   A+ +L  GG F+ K F+G   + I   L+  F+K
Sbjct: 185 GAPDVTGLHDLDIYVQSQLLYSALNLAVGVLRPGGKFVAKIFRGRDVDLIYAQLRTVFEK 244

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP +SRA S+E F++ +GF
Sbjct: 245 VSVAKPRSSRASSLEAFVVCEGF 267


>gi|293333905|ref|NP_001168052.1| hypothetical protein LOC100381782 [Zea mays]
 gi|223945719|gb|ACN26943.1| unknown [Zea mays]
          Length = 298

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ +   L + R ++DL ++PG W QVA      
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFHFLPTARSVLDLCAAPGGWVQVAVNHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            A    VV +D++ + PI G      D         +R+ +  N     D+VL D +   
Sbjct: 67  GAF---VVGVDLVPIRPIRGAHSLTEDITATKCRAAVRRLMDSNGVSAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     +L   A   A   L   G F+ K F+    N I+  LK+ F+KV   K
Sbjct: 124 GGAWAQEATSQSALVIDALRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQLFEKVEATK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E++++   ++
Sbjct: 184 PTASRSTSAEIYIICLKYK 202


>gi|68074943|ref|XP_679388.1| ribosomal RNA methyltransferase [Plasmodium berghei strain ANKA]
 gi|56500124|emb|CAH98004.1| ribosomal RNA methyltransferase, putative [Plasmodium berghei]
          Length = 253

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 126/212 (59%), Gaps = 4/212 (1%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
            K+ N+    SS+ W+ R I D YV +A+ E +R+R+A+KL++++ K+  L+ N+ I+D+
Sbjct: 22  PKIYNKKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDI 80

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           GS PGSW QV    T +  N   ++AID   M+P+  V F K +    +  + +++ +  
Sbjct: 81  GSYPGSWCQVILERTKNYTNE--IIAIDKKIMDPLPNVHFIKAEIGKDNVDDQLKEVLKD 138

Query: 135 NP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D++LSD A   IG++  DHL +  L  + T F  + +NIGG ++VK + G  TN++ 
Sbjct: 139 KKIDIILSDAAVACIGNKIDDHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTNNLK 198

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             LK  FQ V   KP ASR+ES E++L+ + F
Sbjct: 199 TYLKTIFQYVNTAKPKASRSESREIYLVCRNF 230


>gi|259487095|tpe|CBF85494.1| TPA: tRNA methyltransferase, putative (AFU_orthologue;
           AFUA_6G08910) [Aspergillus nidulans FGSC A4]
          Length = 420

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 65/260 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR-------------------------------------------VVAID 102
           +R+     +  R                                           +V+ID
Sbjct: 65  SRVLIKGESFGRRSWVEKRRKEQAALENLDGDAPAANQGADITDSTALKPRKNVKIVSID 124

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-----------------DLVLSDMAY 145
           +  M P+ G+   + D     +   + QA+                     DLV+SD A 
Sbjct: 125 LQPMAPLQGITTLQADITHPSTIPLLLQALDPEAYDSTSSTPHAVRQPHPVDLVISDGAP 184

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  +A   AL +L  GG F+ K F+    + +   L+  F++V  
Sbjct: 185 DVTGLHDLDIYIQSQLLYSALNLALGVLRPGGKFVAKIFRDRDVDLLYSQLRTVFERVSV 244

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SRA S+E F++ +GF
Sbjct: 245 AKPRSSRASSLEAFIVCEGF 264


>gi|325114247|emb|CBZ49804.1| putative ftsJ-like methyltransferase domain-containing protein
           [Neospora caninum Liverpool]
          Length = 988

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 12/212 (5%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGS 76
           + +  +G  R        D +   A+ +G+RARSA+KLLQ++++  +  ++  R+VDL +
Sbjct: 6   QRKKKKGKERL-------DKFYHLAKEQGYRARSAFKLLQLSQRFNLFQKNCSRVVDLCA 58

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVAA+     +    +V +D++ ++PI GV+ F  D         +R+ +  G 
Sbjct: 59  APGGWLQVAAKHCPVAST---IVGVDLVPIQPIRGVETFTGDITTAACAAKLRKLVKFGE 115

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            DLVL D +        +D      L  +A   A ++L  G  F+ K F+ G    +L +
Sbjct: 116 VDLVLHDGSPNMGTDWSVDAFNQNVLVLSAARLACQLLAAGATFVSKVFRSGDYAALLYV 175

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L+  F +V   KP ASRA S E+F++ +GF+K
Sbjct: 176 LQTLFDRVDATKPQASRAVSAEIFVVCRGFKK 207


>gi|71028686|ref|XP_763986.1| ribosomal RNA methyltransferase [Theileria parva strain Muguga]
 gi|68350940|gb|EAN31703.1| ribosomal RNA methyltransferase, putative [Theileria parva]
          Length = 247

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 119/215 (55%), Gaps = 11/215 (5%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
               S +W+ R I+D Y+ +  ++ +R+RSAYKL+++++K+ I + N+ +V+LG  PG W
Sbjct: 10  ASTHSSEWVRRQISDRYLIQKHIDNYRSRSAYKLIELDDKYFIFRKNQTVVELGCYPGGW 69

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVL 140
           +QVA   T + A+++RV+ ID   ++PI    F K +  D ++   +   + G   D+VL
Sbjct: 70  AQVALERTLTGASSSRVIGIDKTQIDPIPNYDFIKGEINDQETHNKLLTLLDGVKADVVL 129

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD+A    G +  DHL +  LC  AT    +++ +GG F+VK F GG  +     L+  F
Sbjct: 130 SDLAPNCTGIKMDDHLNSAELCLQATSLMEKVITVGGTFVVKIFMGGQLDRYKTYLRSLF 189

Query: 201 QKVIHVKPV----------ASRAESVEMFLLAKGF 225
            +V   KP           A R+ES EM+ + K F
Sbjct: 190 SEVRSSKPKLVDFHFTFCRACRSESKEMYFVCKKF 224


>gi|257387081|ref|YP_003176854.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomicrobium mukohataei
           DSM 12286]
 gi|257169388|gb|ACV47147.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomicrobium mukohataei
           DSM 12286]
          Length = 262

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 6/197 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  RA+ EG+RARSAYKL Q++E   +L  NR ++DLG++PG W QVAA   G+   
Sbjct: 4   KDDYYNRAKQEGYRARSAYKLQQLDETAGLLGQNRTVLDLGAAPGGWMQVAAERVGTGGV 63

Query: 95  NTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTI 148
              V    I D++ P   V+  + D  D  + E +R  +G        D+V+SD+A    
Sbjct: 64  VIGVDRQRIDDLDDPDPTVETIRGDMTDESTKEEVRDVVGAEGDERPVDVVISDLAPNMT 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +DH R++ L   A   A ++L  GGDF VK F G    D+   ++  F+ V  V+P
Sbjct: 124 GQYDLDHARSIHLARQAFAVAEDVLATGGDFAVKVFDGQDLADLEADIESEFEYVRQVRP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR  S E++L+AKGF
Sbjct: 184 DASRDSSSELYLVAKGF 200


>gi|284163460|ref|YP_003401739.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haloterrigena turkmenica
           DSM 5511]
 gi|284013115|gb|ADB59066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haloterrigena turkmenica
           DSM 5511]
          Length = 261

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 9/197 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  RA+ +G+R+R+AYKL Q+++   ++  +  +VDLG++PG W QVAA   G   
Sbjct: 3   RKDDYYNRAKQQGYRSRAAYKLKQLDDLENVISGHDTVVDLGAAPGGWLQVAAEKVGPQG 62

Query: 94  NNTRVVAIDILDMEPILG------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
               V+ +D+  ++ +        V+  + D  +  + + +  A GG+ D+V+SDMA   
Sbjct: 63  T---VIGVDLQRIKDLEDETLNERVETIRGDMTEEKTRDRVTDAAGGSVDVVVSDMAPNM 119

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  R++ L   A   ALE+L  GG+F+VK F+G   +D+   +   FQ V    
Sbjct: 120 SGEYSLDQARSLYLARQAFETALELLESGGNFVVKVFEGPDVDDLRADIDDEFQYVRATA 179

Query: 208 PVASRAESVEMFLLAKG 224
           P ASR ES E++L+ KG
Sbjct: 180 PKASREESSEIYLIGKG 196


>gi|195498417|ref|XP_002096514.1| GE25011 [Drosophila yakuba]
 gi|194182615|gb|EDW96226.1| GE25011 [Drosophila yakuba]
          Length = 318

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT- 89
           ++   D + + A+ +GWRARSA+KLLQ  E  Q+L    R VDL ++PGSWSQV A+   
Sbjct: 5   SKDKRDIFYRLAKEQGWRARSAFKLLQAEETFQLLDGLTRAVDLCAAPGSWSQVLAKRMY 64

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMA 144
                      +++A+D+  M  I GV   + D     + E I +  GG    +V+SD A
Sbjct: 65  DPLPPEERERVKIIAVDLQGMASIEGVTQLRADISKESTAEAIIEFFGGEKAQIVVSDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             + G    D      L  +A   +  +L  GG F+ K ++   T+ +   LK+ F+ V 
Sbjct: 125 PDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADKTSRLYTQLKRFFKDVC 184

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP ASR  S+E F++A+ F
Sbjct: 185 VFKPSASRNSSIEAFVVAQKF 205


>gi|167823655|ref|ZP_02455126.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 9]
          Length = 256

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 103/191 (53%), Gaps = 10/191 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           ++ HINDPYV+ AQ EG+RAR+AYKL +I+E+ ++++  + IVDLG++PGSWSQ A    
Sbjct: 1   MHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL 60

Query: 90  G---------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
                         +  ++A+D+L MEP+  V F + DF +      + + + G   DLV
Sbjct: 61  AQGKRRDAVREGGIDGTIIALDMLPMEPVADVHFIQGDFREESVLHQLEEVLAGRAVDLV 120

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SDMA    G    D  R   +C+ A  FA   L   G  LVK F G   + I+   K  
Sbjct: 121 ISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQ 180

Query: 200 FQKVIHVKPVA 210
           F+ V   KP +
Sbjct: 181 FKTVAPRKPKS 191


>gi|154274554|ref|XP_001538128.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces capsulatus
           NAm1]
 gi|150414568|gb|EDN09930.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces capsulatus
           NAm1]
          Length = 372

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 110/264 (41%), Gaps = 69/264 (26%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSNPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR---------------------------------------------VVA 100
           +R+     +  R                                             +VA
Sbjct: 65  SRVLIKGESFGRRAWEEKRQREQKQAQRLEGVKKGVETKEQQGEEEKEILKPRKNVKIVA 124

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-------------------PDLVLS 141
           ID+  M P+ G+   K D     +   + +A+  +                    DLVLS
Sbjct: 125 IDLQPMTPLDGITCLKADITHPSTIPLLLEALDPDDYTHNDTPTTTSTSHRLHPVDLVLS 184

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK  F+
Sbjct: 185 DGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLKTVFE 244

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP +SRA S+E F++ +GF
Sbjct: 245 TVSVAKPRSSRASSLEAFVVCEGF 268


>gi|316973066|gb|EFV56698.1| putative ribosomal RNA large subunit methyltransferase J
           [Trichinella spiralis]
          Length = 633

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y   A+  G+R+R+A+KL+ +N+K Q L+ +  +VDL ++PG W QVA++    
Sbjct: 8   KQRRDKYYNLAKQAGYRSRAAFKLVHLNKKFQFLEKSTCLVDLCAAPGGWLQVASQYMPV 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
           +     ++ +D++ ++ +  V   + D         I++ +     D VL D +     +
Sbjct: 68  SR---LIIGVDLVSIKALHNVITLQNDITTESCLSQIKRELKTWTADCVLHDGSPNVGKN 124

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF-------QKV 203
              D  +   L   A   A  +L  GG F+ K F+      ++ ++KK F       +KV
Sbjct: 125 WNHDAFQQAQLTLHALRLASAILRPGGWFVTKLFRSKDHPTLVNVMKKLFNKVKLAGKKV 184

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP ASR ES E++ + +GF+
Sbjct: 185 HVTKPQASRQESAEIYAVCQGFK 207


>gi|167527299|ref|XP_001747982.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773731|gb|EDQ87369.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1021

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 4/195 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+  G RARSA+KL+Q+N K   LQ ++  +DL ++PG W QVAA+   +
Sbjct: 97  KDRRDKFYHLAKETGLRARSAFKLVQLNRKFNFLQQSKVCIDLCAAPGGWMQVAAQ---N 153

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGH 150
              ++ ++ +D++ ++PI G      D       + +R+ +     D+VL D A      
Sbjct: 154 MPPSSLIIGVDLVPIKPIKGCIGLVADITTERCRQMLRKEMKHLKADVVLHDGAPNVGTS 213

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D     SL   +   A E L   G F+ K F+    + ++ + K+ F+KV   KP +
Sbjct: 214 WIQDAFTQASLVLKSLKLATEFLVEKGTFVTKVFRSRDYHALMWVFKQLFRKVQATKPTS 273

Query: 211 SRAESVEMFLLAKGF 225
           SR  S E+F++ +GF
Sbjct: 274 SRNVSAEIFVVCQGF 288


>gi|67473519|ref|XP_652522.1| ribosomal RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
 gi|56469380|gb|EAL47134.1| ribosomal RNA methyltransferase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 231

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+ EG+RARSA+KL+ +     I      +VDL ++PGSWSQV ++      N 
Sbjct: 6   DKFHRQAKQEGYRARSAFKLIDVERDFHIFDGVHNVVDLCAAPGSWSQVLSKTIKEPKN- 64

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
             +V++D+ D+ PI GV   K D     + + +      G  DL++ D A    G   ID
Sbjct: 65  --IVSVDLQDIAPIEGVTLVKGDITKGSTAKEVMSHFTDGKADLIICDGAPDVTGIHDID 122

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L +AA      +L  GG F+ K F       +    K  F+ V   KP +SR+ 
Sbjct: 123 EANQWILMQAAFSIMAVVLKQGGSFVAKIFVENEYPHLYFQFKSVFESVTIYKPESSRSS 182

Query: 215 SVEMFLLAKGF 225
           S E F++ KGF
Sbjct: 183 SYEHFVVCKGF 193


>gi|67480103|ref|XP_655413.1| ribosomal RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
 gi|56472547|gb|EAL50027.1| ribosomal RNA methyltransferase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 829

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+RARSA+KL+Q+N+++  L S   ++DL ++PG W QVA +        
Sbjct: 13  DKYYHLAKQYGYRARSAFKLVQMNKRYDFLSSAHILIDLCAAPGGWCQVATK---EMPVE 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
           +++  +D+  + PI     +  D      +  +++ + G + D+VL D +         D
Sbjct: 70  SKIFGVDLEPILPIPRCTTYVGDITTGMCFAEMKKLMKGEHADVVLHDGSPNMGKSWIQD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 LC AA  FA+  L  GG F+ K F+      IL + +K F+ VI  KP ASR  
Sbjct: 130 AYTQSELCIAALKFAVTFLKKGGWFISKVFRSQDYYAILFVFEKFFKSVIATKPPASRNT 189

Query: 215 SVEMFLLAKGF 225
           S E++L+ K F
Sbjct: 190 SAEVYLVCKDF 200


>gi|326515274|dbj|BAK03550.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 486

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y   A+ +G+R+R+A+KL Q++++ + L + R ++DL ++PG W QVA     +
Sbjct: 8   KQRRDEYYHLAKEQGYRSRAAFKLQQLDDRFRFLPAARAVLDLCAAPGGWVQVAVARAPA 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            A    VV +D++ + P+ G      D         +R+ +        D+VL D +   
Sbjct: 68  GAF---VVGVDLVPIRPVRGAHSLTEDITTTRCRSAVRRLMDSRGVAVFDVVLHDGSPNV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     +L   A   A   L   G F+ K F+    + I+  LK+ F KV   K
Sbjct: 125 GGAWAQEATAQSALVIDAVRLATAFLAPKGAFITKVFRSQDYSAIMFCLKQLFDKVEVTK 184

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR  S E++++   ++
Sbjct: 185 PRASRGTSAEIYIICLKYK 203


>gi|149539804|ref|XP_001516553.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 243

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
             RR         S   +   WL+RH+ DP+V+  +   +R RSA+KLL+INEK QIL  
Sbjct: 10  RCRRFHVTVRHGGSKTDAEHRWLSRHLKDPFVKATRENNYRCRSAFKLLEINEKQQILSP 69

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFK-FDFLD 121
             R++D G++PG+WSQVA ++  +   + +     V+ +D+L + P+ G  F    D  D
Sbjct: 70  GLRVLDCGAAPGAWSQVAIKMVNAAGTDPKSPIGFVLGVDLLHIFPLEGATFLCPADVTD 129

Query: 122 LDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
               E I++ +     D++LSDMA    G +++DH + +S+C +    +  +L  GG FL
Sbjct: 130 SRIRERIQELLPERKADVILSDMAPNATGIKELDHQKLISMCLSLLDLSSSILISGGTFL 189

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K + GG  + +   L++ FQ+V  +KP ASR ES EM+ LAK ++
Sbjct: 190 CKLWDGGQKHLLQSRLEQQFQEVRIIKPQASRKESSEMYFLAKFYQ 235


>gi|269861051|ref|XP_002650241.1| 23S rRNA methylase [Enterocytozoon bieneusi H348]
 gi|220066331|gb|EED43817.1| 23S rRNA methylase [Enterocytozoon bieneusi H348]
          Length = 556

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y + A+  G+R+R+A+KLL++N+K+  L+  R  +DL ++PG W Q+   + 
Sbjct: 4   VKKQRIDEYYRLAKERGYRSRAAFKLLELNKKYNFLKDCRIAIDLCAAPGGWLQI---LM 60

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTI 148
                  +++ ID+  +E       F+ D    +   E I        D+V+ D A    
Sbjct: 61  QEMPPTRKIIGIDLDKIERCGDCHTFQSDITTQECRRELICLLDNNKADIVVHDGAPNFG 120

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
                D      L  +A   A E L   G F+ K  +      IL LL+  F+ V   KP
Sbjct: 121 NDPSKDIFIQNDLVLSALKLATEFLKTNGIFVTKIHRSENFVKILNLLRSLFKHVTITKP 180

Query: 209 VASRAESVEMFLLAKGFR 226
           ++SR  S E + + + ++
Sbjct: 181 LSSRTTSAETYAVCRLYK 198


>gi|219110463|ref|XP_002176983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411518|gb|EEC51446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 315

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 36/233 (15%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ---------------SNRRIVDL 74
           L+R   D + + A+ +G+RARSA+KLLQ++ +  I                   +R VDL
Sbjct: 4   LSRDKRDVFYRLAKEKGYRARSAFKLLQVDAEFDIFGARGAPASLGNTIEPLRVQRAVDL 63

Query: 75  GSSPGSWSQVAARI--------------------TGSNANNTRVVAIDILDMEPILGVKF 114
            ++PGSWSQV +                               +VA+D+  M PI GV  
Sbjct: 64  CAAPGSWSQVLSDKLYELNHATGDAGANSDQALDIDEQPEEPSIVAVDLQPMAPIDGVLC 123

Query: 115 FKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            + D     +  + I+   G   +LV+ D A    G   +D      L  +A      +L
Sbjct: 124 LQGDITAQSTAQDIIKHFQGNRAELVVCDGAPDVTGLHDVDEYLQGQLLLSAMMITTHVL 183

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              G F+ K F+G     +   L+  F++V   KP +SR  S+E F++ + F+
Sbjct: 184 CERGTFVAKIFRGRNVGFLYAQLRLLFERVSIAKPTSSRNSSMESFVVCQRFK 236


>gi|167378804|ref|XP_001734938.1| ribosomal RNA methyltransferase [Entamoeba dispar SAW760]
 gi|165903298|gb|EDR28886.1| ribosomal RNA methyltransferase, putative [Entamoeba dispar SAW760]
          Length = 231

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+ EG+RARSA+KL+ +     I      +VDL ++PGSWSQV ++      N 
Sbjct: 6   DKFHRQAKQEGYRARSAFKLIDVERDFHIFDGVHNVVDLCAAPGSWSQVLSKTIKEPKN- 64

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
             +V++D+ D+ PI GVK  K D     + + +      G  DL++ D A    G   ID
Sbjct: 65  --IVSVDLQDIAPIEGVKLVKGDITKGSTAKEVMSHFTDGKADLIICDGAPDVTGIHDID 122

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L +AA      +L  GG F+ K F       +    K  F+ V   KP +SR+ 
Sbjct: 123 EANQWILMQAAFSIMAVVLKQGGSFVAKIFVENEYPHLYFQFKSVFESVTIYKPESSRSS 182

Query: 215 SVEMFLLAKGF 225
           S E F++ KGF
Sbjct: 183 SYEHFVVCKGF 193


>gi|167388553|ref|XP_001738607.1| ribosomal RNA methyltransferase [Entamoeba dispar SAW760]
 gi|165898080|gb|EDR25052.1| ribosomal RNA methyltransferase, putative [Entamoeba dispar SAW760]
          Length = 829

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+  G+RARSA+KL+Q+N+++  L S   ++DL ++PG W QVA +        
Sbjct: 13  DKYYHLAKQYGYRARSAFKLVQMNKRYDFLSSAHILIDLCAAPGGWCQVATK---EMPVE 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKID 154
           +++  +D+  + PI     +  D      +  +++ + G + D+VL D +         D
Sbjct: 70  SKIFGVDLEPILPIPRCTTYVGDITTGMCFAEMKKLMKGEHADVVLHDGSPNMGKSWIQD 129

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 LC AA  FA+  L  GG F+ K F+      IL + +K F+ VI  KP ASR  
Sbjct: 130 AYTQSELCIAALKFAVTFLKKGGWFISKVFRSQDYYAILFVFEKFFKSVIATKPPASRNT 189

Query: 215 SVEMFLLAKGF 225
           S E++L+ K F
Sbjct: 190 SAEVYLVCKDF 200


>gi|330840582|ref|XP_003292292.1| hypothetical protein DICPUDRAFT_57851 [Dictyostelium purpureum]
 gi|325077462|gb|EGC31172.1| hypothetical protein DICPUDRAFT_57851 [Dictyostelium purpureum]
          Length = 817

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 4/203 (1%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G  +  L +   D +   A+ +G+R+R+A+KL+Q+N+K+  L S +  +DL ++PG W Q
Sbjct: 2   GQKKKKLAKGRLDKFYYLAKEQGYRSRAAFKLVQLNKKYNFLGSAKACLDLCAAPGGWMQ 61

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSD 142
           VA++        + +V +D++ +  +        D         I++A+     D+ L D
Sbjct: 62  VASKYM---PVQSLIVGVDLVPIRQVRNCISLAEDITTQKCRTEIKKALKTWKVDVCLHD 118

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            A         D  +   L   A   A E L  GG F+ K F+G   N ++ +  K F+K
Sbjct: 119 GAPNMGTSWVQDAYQQAELTLHALKLATEFLATGGWFVTKVFRGADYNSLIWVFNKLFRK 178

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V   KP ASR  S E+F++ +GF
Sbjct: 179 VESTKPQASRNASAEIFVVCQGF 201


>gi|317142766|ref|XP_001819081.2| transfer RNA methyltransferase [Aspergillus oryzae RIB40]
          Length = 393

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 30/225 (13%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNA--------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
           +R+   +A         N ++V+ID+  M P+ G+   K D     +   + +A+     
Sbjct: 65  SRVLIKDAAMEELKPRKNVKIVSIDLQPMAPLEGITTLKADITHPSTIPLLLRALDPEAY 124

Query: 137 ----------------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                           DLV+SD A    G   +D      L  AA   AL +L  GG F+
Sbjct: 125 DSTTSSPSSLRQPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLALGVLRPGGKFV 184

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            K F+G   + I   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 185 AKIFRGRDVDLIYAQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 229


>gi|126179410|ref|YP_001047375.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoculleus
           marisnigri JR1]
 gi|158513234|sp|A3CVJ3|RLME_METMJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|125862204|gb|ABN57393.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanoculleus marisnigri
           JR1]
          Length = 203

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 67/192 (34%), Positives = 108/192 (56%), Gaps = 5/192 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D   ++A   G+RAR+AYKLL+I +++ I++ +  +VDLG++PGSW QV   +      
Sbjct: 7   KDSVYRKAMKAGYRARAAYKLLEIQQRNGIIRPDDNVVDLGAAPGSWLQVLRDL-----T 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
           + RV+ +D+  + P+ GV     DF D    E IR+  GG   +V+SD +    G +  D
Sbjct: 62  DGRVIGVDLNPIAPMEGVTTIVGDFTDPLVQERIREEAGGVVSVVVSDASPKLSGQKSYD 121

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R + L E A  FA  +L  GG+ ++K+FQG    +++   +KHF  V   +  ASR  
Sbjct: 122 QARAIGLGEDALAFACTVLKPGGNMVIKSFQGELFGELIAETRKHFYSVRGYRTKASRKG 181

Query: 215 SVEMFLLAKGFR 226
           S E +++AK F+
Sbjct: 182 SAETYIIAKNFK 193


>gi|118369700|ref|XP_001018053.1| FtsJ-like methyltransferase family protein [Tetrahymena
           thermophila]
 gi|89299820|gb|EAR97808.1| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
           SB210]
          Length = 947

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D +   A+  G+R+R+ +KL+QIN+K+  L+    ++DL ++PG W QVAA+      
Sbjct: 11  RKDVHYYMAKEYGYRSRACFKLIQINKKYGFLEKANAVIDLCAAPGGWLQVAAKFCPVTC 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTIGHRK 152
                + +D++ ++PI GVK +  D     +++ + R+  GG  D+VL+D A     + +
Sbjct: 71  TK---IGLDLVPIKPIPGVKTYVQDITAPVTYQLLKRELKGGKADVVLNDGAPNVGANWQ 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D    + L  AA   A+  L  GG F+ K F+    N ++ +  K F+K+   KP ASR
Sbjct: 128 KDAFNQIELTLAALKLAVNFLRRGGTFVTKVFRSKDYNALIWVCNKFFRKIEANKPKASR 187

Query: 213 AESVEMFLLAK 223
             S E+F++  
Sbjct: 188 FTSAEIFIVCT 198


>gi|313673338|ref|YP_004051449.1| 23S rRNA um-2552 2'-o-methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940094|gb|ADR19286.1| 23S rRNA Um-2552 2'-O-methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 196

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 119/195 (61%), Gaps = 6/195 (3%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + ++A+LEG+R+R++YKLL++N+K+++ + N  ++D+G++PG WSQVA ++ G   
Sbjct: 4   RKDSFYKKAKLEGYRSRASYKLLELNQKYKLFRKNDAVLDVGAAPGGWSQVALQLLGEKG 63

Query: 94  NNTRVVAIDILDMEPILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               VVA+DILD+ P+      F K D  D ++   I +    + D+V+SD+A  T G +
Sbjct: 64  I---VVAVDILDINPLNDKRFHFIKGDIRDENTLSEITKY-ASSFDIVISDIAPNTTGQK 119

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH  +++L +    F ++ L   G FL K F G     ++  LK+ F+ +  ++P A+
Sbjct: 120 FVDHQNSINLIKTVMNFIMKTLKKNGIFLFKLFDGEERESLVKDLKELFEDIKIIRPDAT 179

Query: 212 RAESVEMFLLAKGFR 226
           R  S E++++ KG++
Sbjct: 180 RKNSFEIYIICKGYK 194


>gi|294654333|ref|XP_456377.2| DEHA2A00902p [Debaryomyces hansenii CBS767]
 gi|199428798|emb|CAG84324.2| DEHA2A00902p [Debaryomyces hansenii]
          Length = 252

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 13/231 (5%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL- 65
           +S  R L  + K++S   SS  WLNR   D + + ++L+ +R+R+A+KL++I++K+++  
Sbjct: 13  ASFIRKLGSRWKSKSV--SSSRWLNRQKKDSHTKESKLQNFRSRAAFKLIEIDDKYRLFN 70

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + ++ IVDLG +PG+W+QVA   T S   N  ++ +D+++  P  G  F + + L   + 
Sbjct: 71  RKSKNIVDLGFAPGAWTQVAIERTKSLNINANIIGVDLINCSPPEGASFIQGNILSKQTH 130

Query: 126 EFIRQAIGGN----------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             I++    N           DL++SDM   T G +  DH  +M LC+ A   A  +LN 
Sbjct: 131 NNIKEFFNNNKNHSECEEKPVDLIISDMMANTSGIKDNDHYASMELCDGALILASALLNK 190

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            G  ++K + G   + +   L+K F KV  +KP A R ES EM+ +    +
Sbjct: 191 NGSMVMKFYTGKEDSLLKEKLQKMFHKVFKMKPSACRDESREMYYIGVRKK 241


>gi|255932265|ref|XP_002557689.1| Pc12g08590 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582308|emb|CAP80486.1| Pc12g08590 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 435

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 74/269 (27%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +     +  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDERFDLFEHENPDNVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR---------------------------------------------VVA 100
           +R+     +  R                                             +V+
Sbjct: 65  SRVLIKGESFGRRAWLEKKRKELKGLEAAETATADGDKMDCDEVSSSSELKPRKNVKIVS 124

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP------------------------ 136
           ID+  M P+ G+   K D     +   + +A+                            
Sbjct: 125 IDLQPMAPLEGITTLKADITHPSTIPLLLRALDPEAYEQPSTPSESPSPATEAIRQPHPV 184

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLV+SD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + +   L
Sbjct: 185 DLVISDGAPDVTGLHDLDIYIQSQLLYAALNLAMGVLRPGGKFVAKIFRGRDVDLLYAQL 244

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  F++V   KP +SRA S+E F++ +GF
Sbjct: 245 RTVFERVSVAKPRSSRASSLEAFVVCEGF 273


>gi|289581714|ref|YP_003480180.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrialba magadii ATCC
           43099]
 gi|289531267|gb|ADD05618.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrialba magadii ATCC
           43099]
          Length = 273

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+ EG+R+R+AYKL Q+++   ++     +VDLG++PG W +VAA   G   
Sbjct: 3   RKDHYYNKAKQEGYRSRAAYKLKQLDQLENVISGGDTVVDLGAAPGGWLEVAAEAVGPQG 62

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---------------PDL 138
               V    I D +    ++  + D  +  + E + +A GG+                D+
Sbjct: 63  QVIGVDLQRIRDFDDHDTIETLRGDMTEERTRERVIEAAGGDVESAETATDAGTGGPVDV 122

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G   +D  R++ L   A   ALE+L   GDF+VK F+G   +D    +++
Sbjct: 123 VISDMAPNMSGEYSLDQARSLHLARQAFETALELLATDGDFIVKVFEGPDVDDFRADVEE 182

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKG 224
            FQ V    P ASR ES E++ + KG
Sbjct: 183 EFQYVRATSPKASRDESSEIYFIGKG 208


>gi|50303355|ref|XP_451619.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640751|emb|CAH02012.1| KLLA0B01980p [Kluyveromyces lactis]
          Length = 289

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 53/257 (20%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           R    +   WL R  ND + + A+ + +R+R+A+KL+ I++K++  + N++++DLG +PG
Sbjct: 24  RYNSNAQNRWLARQKNDHFTKAAKEQQFRSRAAFKLMDIDDKYRFFKQNQKVLDLGFAPG 83

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---- 135
           +WSQVA +  GS      ++ +D+L   P  GV   + + L   + E IR     +    
Sbjct: 84  AWSQVARKRIGSGGM---IMGVDLLRCTPPKGVYSLQANILSKKTHELIRLCFARHIQLN 140

Query: 136 ----------------------------------------------PDLVLSDMAYPTIG 149
                                                          D+VLSDM   T G
Sbjct: 141 KHDQLHKDHGYLQHMLEEELNHLKETEEYKELFSQTDISQNIERYPVDVVLSDMMANTTG 200

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  DH  +M LC+AA   A+++L  GG F  K + G     +   LKK F+KV   KP 
Sbjct: 201 IQSKDHYMSMDLCDAALIVAIDLLKPGGSFTCKLYAGSEDTLLEKRLKKVFKKVDRFKPN 260

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR ES E++ +A+G +
Sbjct: 261 ASRNESKELYFVARGKK 277


>gi|256079102|ref|XP_002575829.1| ribosomal RNA methyltransferase [Schistosoma mansoni]
 gi|238661080|emb|CAZ32064.1| ribosomal RNA methyltransferase, putative [Schistosoma mansoni]
          Length = 885

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 15/214 (7%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +K+K    +            D +   A+  G+R+R+A+KL+Q+N + + L S++ ++
Sbjct: 1   MGKKIKTGKAR-----------KDKFYFLAKETGFRSRAAFKLIQLNRRFKFLNSSKVLI 49

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DL ++PG W QVAA+        + ++ +D++ + PI  VK F  D       + +R  +
Sbjct: 50  DLCAAPGGWLQVAAK---EMPMTSHIIGVDLVPIHPIPKVKTFVADITTDKCKQILRSEL 106

Query: 133 GG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+VL D A        ID      L   +   A E L  GG F+ K F+      
Sbjct: 107 NDLKADVVLHDGAPNVGAAWSIDEYTQAVLSLNSFAIATEFLRRGGWFVTKVFRSRDYEP 166

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +  +L + F+ V  +KP ASR ES E+FL+ + +
Sbjct: 167 LKWVLSQFFRTVRAIKPEASRLESAEIFLVGQNY 200


>gi|330813886|ref|YP_004358125.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486981|gb|AEA81386.1| cell division protein FtsJ / Ribosomal RNA large subunit
           methyltransferase J [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 208

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 125/209 (59%), Gaps = 5/209 (2%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           +K + ++   SS+ WL R +NDP V  A+ + +R+R+ +K L+INEKHQ L++N  I+DL
Sbjct: 2   KKFQKKNLSHSSKLWLTRQLNDPLVAEAKKQNYRSRAIFKFLEINEKHQFLKNNLNIIDL 61

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-G 133
           G++PGSWSQ  ++I     N    +A+D+LD +PI   K  K DF   +    +   + G
Sbjct: 62  GAAPGSWSQHTSKINKDGVN----IALDLLDTKPINNCKIIKGDFTSDEVQNKLVNLLEG 117

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D+VLSD+A  + G+R +D +R+  +      F+L+ L   G  L+KTF G    +++
Sbjct: 118 KKFDIVLSDIAENSTGNRSLDSMRSNIITVEVMKFSLKHLKKNGKILIKTFSGVGNEEVV 177

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLA 222
            + KK+F K I +KP +SR +S E++L  
Sbjct: 178 DMAKKNFSKHIFIKPKSSRKDSKELYLYC 206


>gi|78357369|ref|YP_388818.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123552112|sp|Q30YX3|RLME_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|78219774|gb|ABB39123.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 207

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +I+++  IL+   R++DLG++PGSWS  AA   G 
Sbjct: 2   KKYRDHYFLKAKRENYPARSVYKLKEIDKRFGILKQGMRVLDLGAAPGSWSLGAAEKIGP 61

Query: 92  NANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           +    RV+A DI   E +    V F + D  +  +      +  G  D+V+SDMA  T G
Sbjct: 62  SG---RVLAADIQTTETVFPPNVTFMQEDVFERSAEFEQALSETGPFDVVISDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           H+  D  R+ +LC  A   A   L  GG F+VK F G      +  ++  F  V   KP 
Sbjct: 119 HKFTDQARSSNLCFEALAVASLHLVEGGSFVVKIFMGPDVEAYVKQMRTLFTAVKSFKPK 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR+ES E F +  GF+
Sbjct: 179 SSRSESKETFYIGLGFK 195


>gi|168007294|ref|XP_001756343.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692382|gb|EDQ78739.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 844

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+++KL+Q++ K Q L S R ++DL ++PG W QV ++        
Sbjct: 13  DRFYYLAKEQGFRSRASFKLVQLDRKFQFLSSARSVLDLCAAPGGWMQVCSKNMPVG--- 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAYPTIGHR 151
           + ++ ID++ + PI G    + D         I++ +         +VL D +    G  
Sbjct: 70  SLIIGIDLVPIRPIRGCVTLQEDITTPQCRAAIKKVLKEKKHDMVQVVLHDGSPNVGGAW 129

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             +     +L   +   A ++L  GG F+ K F+    N +L   K+ F+KV   KP+AS
Sbjct: 130 SSESSAQTALVLDSLKLATDVLCPGGTFVTKIFRSQDYNALLFAFKQLFEKVEVTKPIAS 189

Query: 212 RAESVEMFLLAKGFR 226
           RA S E++++ + +R
Sbjct: 190 RATSAEIYVICQKYR 204


>gi|145354875|ref|XP_001421700.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581938|gb|ABO99993.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 376

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 5/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            R I D Y   A+ +G+R+R+A+KL+Q+N K+  L   R  +DL ++PG W QVA +   
Sbjct: 87  ARSIADKYYYLAKEQGFRSRAAFKLVQLNRKYDFLSKARACMDLCAAPGGWLQVAQKYM- 145

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTI 148
               ++ +V +D+  + PI GV     D         +++    G   D+V+ D A    
Sbjct: 146 --PMSSTIVGVDLAPIRPIRGVTTLVEDITTQSCRAALKRVTPQGLKYDVVIHDGAPNVG 203

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+   +     +L   +   A E L  GG F+ K F+    + +L   ++ F+KV   KP
Sbjct: 204 GNFAKESYTQAALTLDSLRLATEFLGPGGWFVTKVFRSVEYHALLYAFQQLFKKVESTKP 263

Query: 209 VASRAESVEMFLLAKGF 225
           VASR  S E++++  G+
Sbjct: 264 VASRGTSAEIYVVCSGY 280


>gi|119185034|ref|XP_001243345.1| hypothetical protein CIMG_07241 [Coccidioides immitis RS]
          Length = 336

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 114/267 (42%), Gaps = 63/267 (23%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W  R   D Y + A L G ++R+A+KLLQIN  ++I +  + +VDLG +PGS
Sbjct: 64  RRFASSKQWQARQFKDIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGS 123

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKF---------FKFDFLD---------- 121
           WSQVA  +T  N    RV+ IDI+  +P  GV            +    +          
Sbjct: 124 WSQVAVDLTHPNG---RVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFLRNPDRGRP 180

Query: 122 ------------------------------LDSWEFIR-----------QAIGGNPDLVL 140
                                          D  E I            +A  G  D+VL
Sbjct: 181 LREELCSRTPQKPRTANEVETFEPGYIDREKDVSERISREPCDDHSPQTEAGEGTVDVVL 240

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SDM   T G    DH R+M LC AA  F+ ++L  GG F+ K +QG     +   LK  F
Sbjct: 241 SDMMMNTSGLGFRDHARSMDLCNAAVNFSYDVLKPGGHFICKFYQGNEDQQLELRLKSLF 300

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFRK 227
           QKV   KP +SR ES E + +    ++
Sbjct: 301 QKVHREKPDSSRKESREAYFIGLKRKR 327


>gi|51854285|gb|AAU10666.1| unknown protein [Oryza sativa Japonica Group]
          Length = 749

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA      
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            A    VV +D++ + PI G      D         +R+ +  N     D+VL D +   
Sbjct: 67  GAF---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     SL   A   A   L   G F+ K F+    N I+  LK+ F+KV   K
Sbjct: 124 GGAWAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQLFEKVEVTK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E++++   ++
Sbjct: 184 PTASRSTSAEIYIICLRYK 202


>gi|169618599|ref|XP_001802713.1| hypothetical protein SNOG_12491 [Phaeosphaeria nodorum SN15]
 gi|160703646|gb|EAT80304.2| hypothetical protein SNOG_12491 [Phaeosphaeria nodorum SN15]
          Length = 377

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 53/248 (21%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSAYKLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEEGWRARSAYKLLQLDEEFNLFDGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR-----------------------------------------VVAIDILDMEPI 109
                 R                                         +VAID+  M P+
Sbjct: 65  KGEKFGRAGWQEKQAATRNYVLGVKPIEKSLEKLEIKEEAPKPREGVRIVAIDLQPMSPL 124

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGN------------PDLVLSDMAYPTIGHRKIDHLR 157
            GV   + D     +   + +A+  +             DLV+SD A    G   +D   
Sbjct: 125 EGVTTLRADITHPSTIPLMLKALDPDTYDPSATTASSPVDLVISDGAPDVTGLHDLDIYV 184

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
              L  AA   AL +L  GG F+ K F+G   + +   LK  F++V   KP +SRA S+E
Sbjct: 185 QSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKIVFERVRVAKPRSSRASSIE 244

Query: 218 MFLLAKGF 225
            F++ +GF
Sbjct: 245 AFVVCEGF 252


>gi|88608723|ref|YP_506429.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           sennetsu str. Miyayama]
 gi|123491814|sp|Q2GDL7|RLME_NEOSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88600892|gb|ABD46360.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           sennetsu str. Miyayama]
          Length = 213

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 5/208 (2%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           +   C  SS  WL RH+NDP+V++A+ E +R+R+AYKLL+I+EK  +++    +++LGS+
Sbjct: 7   RVGRCTASSSRWLYRHVNDPFVKKAKAEQYRSRAAYKLLEIDEKFNLIRKGFVVLELGSA 66

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG WSQV A I        R++A+D+ DM+PI GV+  K D  +L   E      G   D
Sbjct: 67  PGGWSQVIADILN---GTGRLIAVDLADMDPISGVEVVKLDI-ELQRKELYEYISGVELD 122

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG-GTTNDILCLL 196
           +++SD+A    G R  D + ++ L E    +A   L   G  + K  +G       +  L
Sbjct: 123 VIVSDLAPSASGSRVTDSISSIRLAELVLHYAKNSLKKFGTVVTKILRGSEDEYRFVNSL 182

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +K F+K+ + KP ASR  S E++L+  G
Sbjct: 183 RKQFKKIEYFKPDASRKASREIYLILLG 210


>gi|159115593|ref|XP_001708019.1| FtsJ cell division protein, putative [Giardia lamblia ATCC 50803]
 gi|157436128|gb|EDO80345.1| FtsJ cell division protein, putative [Giardia lamblia ATCC 50803]
          Length = 1084

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           ++  D Y + A+  G+R+R+AYKL+Q++ ++  L S + ++DL ++PGSWSQVAA     
Sbjct: 10  KNRKDEYYRLAREAGYRSRAAYKLIQLDAQYGFLSSTKCLIDLCAAPGSWSQVAAMKMPV 69

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGH 150
               + +V++D+  ++PI GV  F  D         + + + G   D V+ D A      
Sbjct: 70  G---SLIVSVDLDPIKPINGVVSFCSDITTAACRNALTEKLKGWAVDTVIHDGAPNMGTA 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D     +L  AA   A E L + G F+ K F+    + +L +L++ F+KV   KP A
Sbjct: 127 WGVDAFGQNTLVLAACKLATEFLRMHGTFITKIFRSADHDALLYVLRQLFEKVEITKPRA 186

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E F +   ++
Sbjct: 187 SRDNSSECFAVCLRYK 202


>gi|240277959|gb|EER41466.1| 2'-O-ribose methyltransferase [Ajellomyces capsulatus H143]
 gi|325096021|gb|EGC49331.1| 2-O-ribose methyltransferase [Ajellomyces capsulatus H88]
          Length = 379

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 110/271 (40%), Gaps = 76/271 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSNPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWEEKWRREQKQAQRLERGKKGVETKEQQGEEEEEEGEEEKEILKPR 124

Query: 98  ----VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------------------ 135
               +VAID+  M P+ G+   K D     +   + +A+  +                  
Sbjct: 125 KNVKIVAIDLQPMTPLDGITCLKADITHPSTIPLLLEALDPDDYTHNDTLTTTSISHRLH 184

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
             DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I  
Sbjct: 185 PVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYA 244

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            LK  F+ V   KP +SRA S+E F++ +GF
Sbjct: 245 QLKTVFETVSVAKPRSSRASSLEAFVVCEGF 275


>gi|116748440|ref|YP_845127.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Syntrophobacter
           fumaroxidans MPOB]
 gi|143461985|sp|A0LGZ0|RLME_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|116697504|gb|ABK16692.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Syntrophobacter
           fumaroxidans MPOB]
          Length = 197

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 2/194 (1%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y  +A+ E + AR+ YKL +I ++++IL+   R++DLG++PGSW Q A  I G + 
Sbjct: 5   VRDHYFHKAKKEHYLARAVYKLQEIQDRYKILKPGNRVLDLGAAPGSWMQFAREIVGPSG 64

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               V    +    P  GV   + D  D +          G  D+VLSDMA  T G R  
Sbjct: 65  LVVGVDLKGVEHRFP-EGVVVLQGDVTDPE-LARSLSVEHGPFDVVLSDMAPSTSGIRVA 122

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R+  L E+A   A   L  GG F+ K FQG   + +L  +K+ F+ V   KP ASR 
Sbjct: 123 DSARSALLFESALEMARSALRPGGHFVAKLFQGAEFHVLLQAVKRDFEWVKVTKPDASRK 182

Query: 214 ESVEMFLLAKGFRK 227
           +S E++++    RK
Sbjct: 183 QSKEIYVIGMRLRK 196


>gi|66358984|ref|XP_626670.1| ybr061c-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
 gi|46228392|gb|EAK89291.1| ybr061c-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
          Length = 296

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 19/204 (9%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA--------------- 86
           A+ EG+RARSAYKL+QI+EK+ I     R VDL ++PGSWSQV +               
Sbjct: 37  AKQEGFRARSAYKLIQIDEKYNIFDKVTRAVDLCAAPGSWSQVLSTKLLNNSEYNEGQPK 96

Query: 87  ---RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSD 142
              +I  +N     +VA+D+ +M PI GV   K D     +   I +   G   DLVL D
Sbjct: 97  ETDQIDSNNGEAPLIVAVDLQEMAPIYGVNIIKGDITSQLTVSRILEYFQGKKADLVLCD 156

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            +    G   ID      L  ++     +++  GG F+ K F+G   + I   +  +F+ 
Sbjct: 157 GSPDVTGLHDIDEYIQNQLLVSSLSITSKIMRKGGTFVAKIFRGENISRIYQQMFCYFEL 216

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S+E F++ + F+
Sbjct: 217 VDCCKPESSRNSSLEAFIVCRYFK 240


>gi|289597003|ref|YP_003483699.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Aciduliprofundum boonei
           T469]
 gi|289534790|gb|ADD09137.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Aciduliprofundum boonei
           T469]
          Length = 195

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/192 (34%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y   A+  G+++R+++KLLQIN++  +++    ++DLG++PG WSQVA +I G    
Sbjct: 4   RDYYYWEAKKRGYKSRASFKLLQINDRFYLIRKGYTVLDLGAAPGGWSQVALKIVGREG- 62

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             RV+A+DI  ++ +  V++ + D    ++ + I++      D+VLSDM+    G    D
Sbjct: 63  --RVIAVDIKPVK-LRDVEYIRGDVYSDETLKRIKER-AEKVDVVLSDMSPKISGISSWD 118

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           H R++ L E A F A  +L   G F+VK FQG   N  L   +  F  V   KP AS  E
Sbjct: 119 HARSIDLAERALFIAENVLRERGHFVVKIFQGDMLNAYLKKCRDRFDMVKVHKPKASNRE 178

Query: 215 SVEMFLLAKGFR 226
           S E++++ K F+
Sbjct: 179 SPEIYVVCKRFK 190


>gi|89071362|ref|ZP_01158495.1| cell division protein ftsJ [Oceanicola granulosus HTCC2516]
 gi|89043139|gb|EAR49383.1| cell division protein ftsJ [Oceanicola granulosus HTCC2516]
          Length = 199

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 86/169 (50%), Positives = 116/169 (68%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           +++++++L+   RIVDLG++PG W QVA   TGS A + RVV ID L +EP+ G      
Sbjct: 1   MDDRYKLLKPGHRIVDLGAAPGGWCQVAVDRTGSTAADVRVVGIDYLTVEPVAGATILLM 60

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DFLD  + + + + +G  PD+VLSD+A PT GHR  DH+RTM LC+ A  FA+  L  GG
Sbjct: 61  DFLDDAAPDKLMETLGEAPDIVLSDLAAPTTGHRPTDHIRTMHLCDVAADFAIRTLKPGG 120

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FL KTFQGGT  ++L LLK+HF  V HVKP ASR  SVE+++LAK F+
Sbjct: 121 HFLAKTFQGGTERELLTLLKRHFVSVHHVKPPASREGSVELYILAKSFK 169


>gi|223997678|ref|XP_002288512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975620|gb|EED93948.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 208

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 4/187 (2%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A+ +G+R+R+A+KL QIN K  IL++ + I+DL ++PG W+QV AR   +N++ T ++A+
Sbjct: 5   AKEQGFRSRAAFKLTQINRKFNILKNAQTIIDLCAAPGGWTQVCARSLPNNSSTT-ILAV 63

Query: 102 DILDMEPI--LGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRT 158
           DIL +  +    V     D         IR  + G   D+VL D A         D    
Sbjct: 64  DILPIRNLNSKNVITLIGDITTEKCKAAIRSEMQGAGADVVLCDGAPNVGASYDRDAYMQ 123

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
             L   A   A E L   G F+ K ++    +  L + K+ F  V  VKP ASR++S E+
Sbjct: 124 NELALHALKCACEHLRKKGTFVTKLYRSSDYSAYLWVAKQFFHTVQAVKPSASRSQSAEI 183

Query: 219 FLLAKGF 225
           FL+ +G+
Sbjct: 184 FLVCEGY 190


>gi|308159656|gb|EFO62181.1| FtsJ cell division protein, putative [Giardia lamblia P15]
          Length = 1084

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 4/198 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + ++  D Y + A+  G+R+R+AYKL+Q++ ++  L S + ++DL ++PGSWSQVAA   
Sbjct: 8   IGKNRKDEYYRLAREAGYRSRAAYKLIQLDAQYGFLSSTKCLIDLCAAPGSWSQVAAMKM 67

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
                 + +V++D+  ++PI GV  F  D         + + + G   D V+ D A    
Sbjct: 68  PVG---SLIVSVDLDPIKPINGVVSFCSDITTAACRNALTEKLKGWAVDTVIHDGAPNMG 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
               +D     +L  AA   A E L + G F+ K F+    + +L +L++ F+KV   KP
Sbjct: 125 TAWGVDAFGQNTLVLAACKLATEFLRMHGTFITKIFRSADHDALLYVLRQLFEKVEITKP 184

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR  S E F +   ++
Sbjct: 185 RASRDNSSECFAVCLRYK 202


>gi|94264071|ref|ZP_01287870.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [delta proteobacterium
           MLMS-1]
 gi|93455487|gb|EAT05677.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [delta proteobacterium
           MLMS-1]
          Length = 199

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 4/198 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y  RA+ EG+ ARS YKL++  +K ++L+   R++DLG  PG WS  AA   G+
Sbjct: 2   KQVQDHYYHRAKKEGYPARSVYKLIEAQQKFRLLRPGDRVLDLGCQPGGWSMFAAEQVGA 61

Query: 92  NANNTRVVAIDILDMEPILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 V  ++   + P  G    F   D         +R+ I  +  ++LSDMA  T G
Sbjct: 62  RGLVVGVD-LNPGPIRPRKGAPFHFVLGDINRESVLARVRE-ITPDYTVLLSDMAPRTTG 119

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R  D  +++ L       A E+L  GG+F  K F+G    +++   ++ F KV   KP 
Sbjct: 120 NRWADQQQSLRLAREVLRLAGELLAAGGNFYCKVFEGEDFQELVADCRQRFAKVKIFKPK 179

Query: 210 ASRAESVEMFLLAKGFRK 227
           +SRAES E+F+L    ++
Sbjct: 180 SSRAESREVFVLGLKHKQ 197


>gi|242088869|ref|XP_002440267.1| hypothetical protein SORBIDRAFT_09g028780 [Sorghum bicolor]
 gi|241945552|gb|EES18697.1| hypothetical protein SORBIDRAFT_09g028780 [Sorghum bicolor]
          Length = 819

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA      
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARSVLDLCAAPGGWVQVAVNHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            A    VV +D++ + PI G      D         +R+ +  N     D+VL D +   
Sbjct: 67  GAF---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVSAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     +L   A   A   L   G F+ K F+    N I+  LK+ F+KV   K
Sbjct: 124 GGAWAQEATSQSALVIDALRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQFFEKVEATK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E++++ + ++
Sbjct: 184 PSASRSTSAEIYIICQKYK 202


>gi|218888283|ref|YP_002437604.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|226703295|sp|B8DNJ4|RLME_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|218759237|gb|ACL10136.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 201

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 5/195 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+ E + ARS YKL +I+ + ++ +   +++DLG++PGSWS  AA   G   
Sbjct: 4   YRDHYFLKAKQENYPARSIYKLKEIDNRFKLFRQGMKVLDLGAAPGSWSLGAAERVGPKG 63

Query: 94  NNTRVVAIDIL--DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
              RV+A D+   D +    V F + D  +         A  G   +V+SDMA  T G R
Sbjct: 64  ---RVLACDLQTTDTQFPPNVTFMQEDVFNRSEAFEDALAAMGPFHVVISDMAPRTTGTR 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ LC  A   A   L  GG F+VK F G     +L  L+  F+ V   KP +S
Sbjct: 121 FTDQARSLELCIEALAVADHCLIKGGSFVVKIFMGPDVKQLLDALRARFETVKTFKPKSS 180

Query: 212 RAESVEMFLLAKGFR 226
           R ES E F +  G+R
Sbjct: 181 RVESKETFYVCLGYR 195


>gi|67608071|ref|XP_666854.1| cell division protein [Cryptosporidium hominis TU502]
 gi|54657922|gb|EAL36626.1| cell division protein [Cryptosporidium hominis]
          Length = 275

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 19/204 (9%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA--------------- 86
           A+ EG+RARSAYKL+QI+EK+ I     R VDL ++PGSWSQV +               
Sbjct: 16  AKQEGFRARSAYKLIQIDEKYNIFDKVTRAVDLCAAPGSWSQVLSTKLLNNSEYNEGQPK 75

Query: 87  ---RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSD 142
              +I  +N     +VA+D+ +M PI GV   K D    L     +    G   DLVL D
Sbjct: 76  ETDKIASNNEEAPLIVAVDLQEMAPIYGVNIIKGDITSRLTVSRILEYFQGKKADLVLCD 135

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
            +    G   ID      L  ++     +++  GG F+ K F+G   + I   +  +F+ 
Sbjct: 136 GSPDVTGLHDIDEYIQNQLLISSLSITSKIMRKGGTFVAKIFRGENISRIYQQMFCYFEL 195

Query: 203 VIHVKPVASRAESVEMFLLAKGFR 226
           V   KP +SR  S+E F++ + F+
Sbjct: 196 VDCCKPESSRNSSLEAFIVCRYFK 219


>gi|327301813|ref|XP_003235599.1| cell division protein ftsj [Trichophyton rubrum CBS 118892]
 gi|326462951|gb|EGD88404.1| cell division protein ftsj [Trichophyton rubrum CBS 118892]
          Length = 291

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 127/287 (44%), Gaps = 64/287 (22%)

Query: 1   MVKPPGSSSRR-GLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M +P   +      +  VK  S   SS+ W  R   D Y + A ++G ++R+A+KLLQIN
Sbjct: 1   MFRPALQNRGSPSCSSFVKVLSRTISSKQWQARQGKDAYTKEASIQGLKSRAAFKLLQIN 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +++++ +S + +VDLG +PGSWSQVA  +T       RVV +DI+  +P  GV   + +F
Sbjct: 61  DRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNF 117

Query: 120 LDLDSWEFIRQAI--------------------------------GGNPDLVLS------ 141
           L     E+++  +                                GG  DL  S      
Sbjct: 118 LSPRVQEYVKDFVRDPNRGRPRSQLPALGEQEKPSPPTEPGAETDGGYIDLERSSSAHIN 177

Query: 142 --DMAYP--------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
             D A P                    T G +  DHL +M LC AA  FA  +L  GG F
Sbjct: 178 KVDEAAPLPTKAKVGSVDVILSDMLMNTSGTKSRDHLGSMELCNAALDFASNVLKEGGHF 237

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K +QG    D    LK+ F +V   KP +SR+ES E + +    R
Sbjct: 238 VCKYYQGSGEKDFENDLKRLFHRVYREKPESSRSESKEAYFIGIRRR 284


>gi|295658670|ref|XP_002789895.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Paracoccidioides
           brasiliensis Pb01]
 gi|226282856|gb|EEH38422.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Paracoccidioides
           brasiliensis Pb01]
          Length = 395

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 77/272 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWEEKRRRECSEEPKLENAKRDEHKWEAEGEEGKEEEQVLKPRKNVK 124

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---------------------- 135
           +VAID+  M P+ G+   K D     +   + +A+  +                      
Sbjct: 125 IVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYAVTSDLTTSTTTRNMPHHHP 184

Query: 136 --PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I 
Sbjct: 185 HPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIY 244

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             LK  F++V   KP +SRA S+E F++ +GF
Sbjct: 245 AQLKTVFERVSVAKPRSSRASSLEAFVVCEGF 276


>gi|71891885|ref|YP_277615.1| ribosomal RNA large subunit (23S) methyltransferase J [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|83305654|sp|Q493U3|RLME_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|71795991|gb|AAZ40742.1| Ribosomal RNA large subunit (23S) methyltransferase J [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 208

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 4/202 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  WL +H  D YV+ AQ +  R+RS +KL  IN    +  +   ++DLGS+PG W+   
Sbjct: 10  SSGWLQKHFKDQYVKAAQRQKLRSRSWFKLDAINRIDALFSTGMTVIDLGSAPGGWALYV 69

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
               G      R+VA DIL M  I GV F K D  + +  + + + +G    ++VLSDMA
Sbjct: 70  KSKIGKTG---RIVACDILSMRNISGVNFLKGDCSNPNISKILYKWVGQKQVNVVLSDMA 126

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G   ID  R++ L   A      +L   G FLVK FQG   +  LC +   F  V 
Sbjct: 127 PNTTGISIIDVSRSIHLGNLALNICRNVLMHRGAFLVKVFQGKGLDKYLCDVHSLFNIVR 186

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP ASR+ S E++++AK  +
Sbjct: 187 IRKPDASRSHSREVYIVAKERK 208


>gi|124512936|ref|XP_001349824.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|23615241|emb|CAD52231.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 288

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 21/230 (9%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
             KV N+    +S  W+ R I+D YV RA+ + +R+R+AYKL++++ K+  L+ N+ I+D
Sbjct: 39  APKVFNKKSSHTS-RWIQRQISDRYVLRAKNDNYRSRAAYKLIELDNKYLFLKKNKIILD 97

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL----------- 122
           +G  PGSW QV    T +     +++ ID   M+PI  V F + +               
Sbjct: 98  IGCYPGSWCQVILERTKN--YKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYI 155

Query: 123 ------DSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                      +++ +     D++LSD A P IG++  DHL +  L  + T F  + +NI
Sbjct: 156 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI 215

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG ++VK + G  TN++   LK  FQ V   KP ASR ES E++L+ K F
Sbjct: 216 GGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNF 265


>gi|226466768|emb|CAX69519.1| hypothetical protein [Schistosoma japonicum]
          Length = 260

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 15/214 (7%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + +K+K    +            D +   A+  G+R+R+A+KL+Q+N + + L S++ ++
Sbjct: 1   MGKKIKTGKAR-----------KDKFYYLAKETGFRSRAAFKLIQLNRRFKFLNSSKVLI 49

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DL ++PG W QVAA+        ++++ +D++ + PI  VK F  D       + +R  +
Sbjct: 50  DLCAAPGGWLQVAAK---EMPIASQIIGVDLVPIHPIPKVKTFIADITTDKCKQILRNEL 106

Query: 133 GG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+VL D A        ID      L   +   A E L  GG F+ K F+      
Sbjct: 107 NESKADVVLHDGAPNVGAAWSIDEYSQAVLSLNSFAIATEFLRRGGWFVTKVFRSRDYEP 166

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              +L + F+ V  +KP ASR ES E+F++ + +
Sbjct: 167 FKWVLSQFFRTVRAIKPEASRLESAEIFIVGQFY 200


>gi|308464733|ref|XP_003094631.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
 gi|308247098|gb|EFO91050.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
          Length = 227

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 14  TQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVD 73
           ++    +  +G+   ++ R  +D +  +A+   +RARSA+KL++I+EK + L+    ++D
Sbjct: 13  SRTFSTKKAKGNLNRYIQRQSSDEFAVKAREHNYRARSAFKLMEIDEKFKFLKPESTVID 72

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI 132
           +G +PGSW QV          N  V+ +D+ ++ PI G +   + D    +    IR+ +
Sbjct: 73  IGCAPGSWIQVVVEKCP----NGYVLGVDLQNVLPIRGAEILSQSDVTSPEVHLKIREKL 128

Query: 133 GGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATF-FALEM---LNIGGDFLVKTFQGG 187
                D+VLSDMA    G    DHLR + LC      F+ E    L   G FL K + G 
Sbjct: 129 KNRQLDVVLSDMAPNPTGDNATDHLRLIELCRTVFRLFSEENCIELKRNGVFLCKIWDGA 188

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              D +  L + F  V  VKP A R  S EM+L  +GF+
Sbjct: 189 ARGDFIRELSERFATVKTVKPTACRDNSAEMYLFCRGFK 227


>gi|303390043|ref|XP_003073253.1| 23S rRNA methyl-transferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302398|gb|ADM11893.1| 23S rRNA methyl-transferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 550

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 4/195 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y   A+ +G+RARSA+KLLQIN K+  L+    ++DL ++PGSW QVAA+    
Sbjct: 9   RTRLDKYYNLAKEKGYRARSAFKLLQINRKYAFLEKAHVLIDLCAAPGSWCQVAAQ---E 65

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
                ++VA+D+  ++ +  V     D    +    +R+ +G    D+VL D A      
Sbjct: 66  MPLRRKIVAVDLEPIKFMGDVDTITADITSDECRLRLREILGTHKADVVLHDGAPNVGTS 125

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            + D      L   +     E L  GG F+ K F+      +L +L + F+ V   KP++
Sbjct: 126 WENDAFNQNLLVLHSARLTAEFLKKGGVFVTKVFRSQDYFSLLNILSQLFETVETSKPLS 185

Query: 211 SRAESVEMFLLAKGF 225
           SR++S E+FL+  GF
Sbjct: 186 SRSQSAEIFLVCLGF 200


>gi|19074557|ref|NP_586063.1| rRNA METHYL-TRANSFERASE [Encephalitozoon cuniculi GB-M1]
 gi|19069199|emb|CAD25667.1| rRNA METHYL-TRANSFERASE [Encephalitozoon cuniculi GB-M1]
          Length = 573

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y   A+ +G+RARSA+KLLQ+N K+  L+    ++DL ++PGSWSQVAA+        
Sbjct: 36  DKYYSLAKEKGYRARSAFKLLQMNRKYGFLEDAHVLIDLCAAPGSWSQVAAQ---EMPLR 92

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKID 154
            ++VAID+  ++ I  V     D    +    +R+ +G    D+VL D A       + D
Sbjct: 93  RKIVAIDLEPIKFIGDVDTIVEDITTDECRLKLREILGTHKADVVLHDGAPNVGTSWEND 152

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L   +   A E L  GG F+ K F+      +L +L + F  V   KP++SR++
Sbjct: 153 AFNQNLLVLHSARLAAEFLRKGGVFVTKVFRSQDYFSLLNVLSQLFGSVETSKPLSSRSQ 212

Query: 215 SVEMFLLAKGF 225
           S E+FL+  GF
Sbjct: 213 SAEIFLVCLGF 223


>gi|325180137|emb|CCA14539.1| ribosomal RNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 264

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-------- 87
           D Y +RA+   +RARSA+KLLQ++++  +    +R VDL ++PGSWSQV +R        
Sbjct: 12  DVYYRRAKELKFRARSAFKLLQLDDQFDLFNDVQRAVDLCAAPGSWSQVLSRKLYSEREL 71

Query: 88  -----ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLS 141
                    +  + ++V++D+ +  PI GVK  + D     +   I R   G    +V+ 
Sbjct: 72  LDLKQRNDEDNESLKIVSVDLQETAPIPGVKLIQGDITSEKTVAEIARHFRGRKAQIVVC 131

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A    G   +D      L  AA   +  +L  GG F+ K F       +       F 
Sbjct: 132 DGAPDVTGMHDVDEFLQAELLHAALNVSAHVLEEGGTFVAKIFHCKQYELLASQFALFFA 191

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            V   KP +SR +S E F++ + FR
Sbjct: 192 NVSRSKPESSRVQSNEAFIIGQQFR 216


>gi|226288116|gb|EEH43629.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Paracoccidioides
           brasiliensis Pb18]
          Length = 397

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 111/274 (40%), Gaps = 79/274 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWEEKRRRECSEVRKLENAKREEHKREAEGEEEKEEEQVLKPRKNVK 124

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---------------------- 135
           +VAID+  M P+ G+   K D     +   + +A+  +                      
Sbjct: 125 IVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYAVISDLTTTTTTGNMPHHHP 184

Query: 136 ----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + 
Sbjct: 185 PPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDL 244

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           I   LK  F++V   KP +SRA S+E F++ +GF
Sbjct: 245 IYAQLKTVFERVSVAKPRSSRASSLEAFVVCEGF 278


>gi|225679098|gb|EEH17382.1| 2'-O-ribose methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 397

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 111/274 (40%), Gaps = 79/274 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWEEKRRRECSEVRKLENAKREEHKREAEGEEEKEEEQVLKPRKNVK 124

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---------------------- 135
           +VAID+  M P+ G+   K D     +   + +A+  +                      
Sbjct: 125 IVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYAVISDLTTTTTTGNMPHHHP 184

Query: 136 ----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + 
Sbjct: 185 HPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDL 244

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           I   LK  F++V   KP +SRA S+E F++ +GF
Sbjct: 245 IYAQLKTVFERVSVAKPRSSRASSLEAFVVCEGF 278


>gi|309355936|emb|CAP38015.2| hypothetical protein CBG_21206 [Caenorhabditis briggsae AF16]
          Length = 236

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 18/240 (7%)

Query: 1   MVKPPGSSSRRGLTQKVKNRSC-QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M+K   +S   G  +    +   +G+   ++ R   D +  +A+   +RARSA+KL++IN
Sbjct: 1   MLKKLENSGIFGKIRDFSTKKAAKGNLNRYIQRQSTDEFTVKAREHNYRARSAFKLIEIN 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-KFD 118
           EK + L+    +VD+G +PGSW QV          N   + +D+ ++ PI G     + D
Sbjct: 61  EKFKFLRPGITVVDVGCAPGSWLQVVVDKCP----NGYALGLDLQNVLPIRGADILSQSD 116

Query: 119 FLDLDSWEFIRQAI---GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------- 168
               +    IR+ +    G  D+VLSDMA    G  + DHLR + LC             
Sbjct: 117 VTSPEIQAKIREKLQMRQGTVDVVLSDMAPNPTGDSETDHLRLIDLCRTVFRLFSKENTV 176

Query: 169 --ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             A E+    G FL K + G    + +  L   F  V  +KP+A R  S E++L  +GFR
Sbjct: 177 ENAFELSRKNGVFLCKIWDGSGRGEFVRELSDRFSMVKTMKPMACRDMSAELYLFCRGFR 236


>gi|326474733|gb|EGD98742.1| cell division protein ftsj [Trichophyton tonsurans CBS 112818]
          Length = 291

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 128/287 (44%), Gaps = 64/287 (22%)

Query: 1   MVKPPGSSSRRGLTQK-VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M +P   +    ++   +K  S   SS+ W  R   D Y + A ++G ++R+A+KLLQIN
Sbjct: 1   MFRPALQNRGLPISSSFLKQFSRTISSKQWQARQGKDAYTKEASMQGLKSRAAFKLLQIN 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           +++++ +S + +VDLG +PGSWSQVA  +T       RVV +DI+  +P  GV   + +F
Sbjct: 61  DRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNF 117

Query: 120 LDLDSWEFIRQAI--------------------------------GGNPDLVLS------ 141
           L     E+++  +                                GG  DL  S      
Sbjct: 118 LSPRVQEYVKDFVRDPNRGRPWSQLPTLNEQGKSSPSTEPGAETDGGYIDLERSSSAHIN 177

Query: 142 ---DMAY-------------------PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              D A                     T G +  DHL +M LC+AA  FA  +L  GG F
Sbjct: 178 KDDDAAPLPTKAKVGSVDVILSDMLMNTSGTKSRDHLGSMELCKAALDFASNVLKEGGHF 237

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K +QG    D    LK+ F +V   KP +SR+ES E + +    R
Sbjct: 238 VCKYYQGPGEKDFENELKRLFHRVYREKPESSRSESKEAYFIGIRRR 284


>gi|85014301|ref|XP_955646.1| ribosomal RNA methyltransferase [Encephalitozoon cuniculi GB-M1]
 gi|19171340|emb|CAD27065.1| putative RIBOSOMAL RNA METHYLTRANSFERASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 237

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 99/195 (50%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
               D Y + A+   +RARS YKL+ I+E+H I +    +VDL ++PGSWSQ A+     
Sbjct: 4   EEKRDVYYRLAKKNKYRARSVYKLMHIDEEHDIFRDVEGVVDLCAAPGSWSQYASEKLLK 63

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
                R+V++DI D+ PI GV   K D       E I + +G   DLV+ D A    G  
Sbjct: 64  RNRGARIVSVDIQDIVPIEGVMCIKDDITSASCLEKILEVLGRPADLVICDGAPDITGIH 123

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
           +ID    + L ++A   +L +   G  F+ K  +G  T  I    +K +  V  +KP AS
Sbjct: 124 EIDEYLQIELLKSALATSLRVSRPGSSFVGKYLRGECTPYIAGHFRKFYGGVTLLKPKAS 183

Query: 212 RAESVEMFLLAKGFR 226
           R +S+E FL   G +
Sbjct: 184 RTDSMECFLYCTGMK 198


>gi|58698158|ref|ZP_00373080.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535308|gb|EAL59385.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 187

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/187 (41%), Positives = 120/187 (64%), Gaps = 9/187 (4%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           Q+   +G+R+RSAYKL++++ K ++ Q  ++I+DLG+SPG W QVA++   +      VV
Sbjct: 2   QKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVASQKGAN------VV 55

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRT 158
           A+D+  M  I GV+F + D ++   +E +R+       D++LSDMA  + G + +DH+R 
Sbjct: 56  ALDVKPMNAINGVEFIQCDIINE--FEILREKFKDQKFDVILSDMAPESCGLKSLDHIRI 113

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           M LCEAA  FA   L+ GG F+VK FQG +  D    LKK F+ V + KP +SR+ES EM
Sbjct: 114 MLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSRSESTEM 173

Query: 219 FLLAKGF 225
           +L++ GF
Sbjct: 174 YLVSLGF 180


>gi|307353428|ref|YP_003894479.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoplanus
           petrolearius DSM 11571]
 gi|307156661|gb|ADN36041.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoplanus
           petrolearius DSM 11571]
          Length = 199

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  +++ EG+R+R+AYKLL I ++  I++ +  IVDLG++PGSW QV   +      
Sbjct: 7   KDKYYNKSRSEGYRSRAAYKLLDIQKRFGIIRDDDNIVDLGAAPGSWMQVLRDM-----T 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
           +  +V +D+  + PI        DF      E I   I    ++V+ D +    G +  D
Sbjct: 62  SGAIVGVDLNPIAPIENTIQITGDFTTEKIQEKIISHI-HEVNVVVCDASPKLSGSKSYD 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R + L   A  FA  +L  GG+F++K+FQG   +++L  +++ F  V   +  ASR  
Sbjct: 121 QARAIGLNHEAFEFARRVLKPGGNFVIKSFQGEMFSELLNDIRESFYSVKVYRTTASRRG 180

Query: 215 SVEMFLLAKGFR 226
           S E +++AK FR
Sbjct: 181 STETYIIAKNFR 192


>gi|115465501|ref|NP_001056350.1| Os05g0567400 [Oryza sativa Japonica Group]
 gi|113579901|dbj|BAF18264.1| Os05g0567400 [Oryza sativa Japonica Group]
          Length = 819

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA      
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            A    VV +D++ + PI G      D         +R+ +  N     D+VL D +   
Sbjct: 67  GAF---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     SL   A   A   L   G F+ K F+    N I+  LK+ F+KV   K
Sbjct: 124 GGAWAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQLFEKVEVTK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E++++   ++
Sbjct: 184 PTASRSTSAEIYIICLRYK 202


>gi|218780797|ref|YP_002432115.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum
           alkenivorans AK-01]
 gi|254809549|sp|B8FL12|RLME_DESAA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|218762181|gb|ACL04647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum
           alkenivorans AK-01]
          Length = 207

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 121/205 (59%), Gaps = 12/205 (5%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +S +     W      D Y  +AQ  G+ ARS +KL ++ ++ +IL+  ++++DLG +PG
Sbjct: 2   KSKKKGKNLW-----RDHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPG 56

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           SW + A++I G   ++ RV+ +D+  M+       +F + D  +L + EF+ + IG + D
Sbjct: 57  SWLKYASQIVG---DSGRVIGLDLKPMDQPDKPNAQFIQGDAFEL-TQEFLDE-IGRDFD 111

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +VLSDMA  T G + +D L++ +LCE+A   A+ +L  GG F+ K FQG   +  +  +K
Sbjct: 112 VVLSDMAPNTTGIKNVDALKSAALCESALAAAVTVLKPGGSFVCKIFQGEGFDAFIKDVK 171

Query: 198 KHFQKVIHVKPVASRAESVEMFLLA 222
           K+F K    KP ++R +S E++++ 
Sbjct: 172 KYFTKHKIFKPESTRKQSREIYVVG 196


>gi|240995616|ref|XP_002404632.1| ribosomal RNA methyltransferase, putative [Ixodes scapularis]
 gi|215491634|gb|EEC01275.1| ribosomal RNA methyltransferase, putative [Ixodes scapularis]
          Length = 817

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 4/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D +   A+  G+R+R+A+KL+Q+N K + LQ +R ++DL ++PG W QVA +  
Sbjct: 7   IGKQRKDKFYHLAKETGYRSRAAFKLIQLNRKFEFLQKSRVLIDLCAAPGGWLQVAQKYM 66

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTI 148
             ++    +V +D++ +  I  V   + D         +++ +     D+VL+D A    
Sbjct: 67  PVSSV---IVGVDLVPIRAIPNVITIQDDITTGSCRFKLKKELKTWKADIVLNDGAPNVG 123

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
                D      L   A   A E L  GG F+ K F+      ++ +LKK F+K+   KP
Sbjct: 124 KSWVHDAYGQNVLTLHAVKLATEFLTKGGWFITKVFRSKDYQALMWVLKKLFRKISATKP 183

Query: 209 VASRAESVEMFLLAKGF 225
            ASR ES E+F++ + +
Sbjct: 184 QASRHESAEIFVVCQYY 200


>gi|326484862|gb|EGE08872.1| ribosomal RNA methyltransferase MRM2 [Trichophyton equinum CBS
           127.97]
          Length = 291

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 121/269 (44%), Gaps = 63/269 (23%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           K  S   SS+ W  R   D Y + A ++G ++R+A+KLLQIN+++++ +S + +VDLG +
Sbjct: 19  KQFSRTISSKQWQARQGKDAYTKEASMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYA 78

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----- 132
           PGSWSQVA  +T       RVV +DI+  +P  GV   + +FL     E+++  +     
Sbjct: 79  PGSWSQVAFNLTKPRG---RVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNR 135

Query: 133 ---------------------------GGNPDLVLS---------DMAY----------- 145
                                      GG  DL  S         D A            
Sbjct: 136 GRPRSQLPTLNEQGKSSPSTEPGAETDGGYIDLERSSSAHINKDDDAAPLPTKAKVGSVD 195

Query: 146 --------PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
                    T G +  DHL +M LC+AA  FA  +L  GG F+ K +QG    D    LK
Sbjct: 196 VILSDMLMNTSGTKSRDHLGSMELCKAALDFASNVLKEGGHFVCKYYQGPGEKDFENELK 255

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + F +V   KP +SR+ES E + +    R
Sbjct: 256 RLFHRVYREKPESSRSESKEAYFIGIRRR 284


>gi|116202349|ref|XP_001226986.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88177577|gb|EAQ85045.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 399

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 110/256 (42%), Gaps = 60/256 (23%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  + +   R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFNLFEDVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR-----------------------------------------------VVAIDI 103
                 R                                               +V+ID+
Sbjct: 65  KGEKFGRCAWQDREAKFRQHMLNVVPSDTTPDQEKPISKDEVPQAQLKPRKDVKIVSIDL 124

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-------------PDLVLSDMAYPTIGH 150
             + P+ G+   + D     +   + +A+  +              DLV+SD A    G 
Sbjct: 125 QPISPLPGIITLRADITHPATVPLLLKALDPDYDPETMNQQASQPVDLVISDGAPDVTGL 184

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV   KP +
Sbjct: 185 HDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKIFFEKVYVAKPRS 244

Query: 211 SRAESVEMFLLAKGFR 226
           SRA SVE F++   F+
Sbjct: 245 SRASSVEAFIVCINFQ 260


>gi|303311695|ref|XP_003065859.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240105521|gb|EER23714.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320039764|gb|EFW21698.1| FtsJ-like methyltransferase [Coccidioides posadasii str. Silveira]
          Length = 380

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 111/273 (40%), Gaps = 78/273 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWEEKRKKQLRDLRRCEEETGRESFSEETQKKGDIDEDGSQILKPRK 124

Query: 98  ---VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------------------- 135
              +VAID+  M P+ G+   K D     +   + +A+  +                   
Sbjct: 125 NVRIVAIDLQPMAPLDGITTLKADITHPSTIPLLLKALDPDLYSENENGNTSTPSPSRPH 184

Query: 136 ---PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I
Sbjct: 185 PHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLI 244

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              LK  F+KV   KP +SRA S+E F++ +GF
Sbjct: 245 YAQLKTVFEKVSVAKPRSSRASSLEAFVVCEGF 277


>gi|225561193|gb|EEH09474.1| 2'-O-ribose methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 381

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 110/273 (40%), Gaps = 78/273 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQ-- 83
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQ  
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSNPDSVTRVVDLCAAPGSWSQVL 64

Query: 84  ------------------------VAARITGSNA-------------------------- 93
                                    A R+ G                             
Sbjct: 65  SRVLIKGESFGRRAWEEKRRREQKQAQRLEGVQKGVETKEQQGEEEEEEEEGEEEKEKLK 124

Query: 94  --NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---------------- 135
              N ++VAID+  M P+ G+   K D     +   + +A+  +                
Sbjct: 125 PRKNVKIVAIDLQPMTPLDGITCLKADITHPSTIPLLLEALDPDNYTHNDTLTTTRTSHR 184

Query: 136 ---PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I
Sbjct: 185 LHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLI 244

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              LK  F+ V   KP +SRA S+E F++ +GF
Sbjct: 245 YAQLKTVFETVSVAKPRSSRASSLEAFVVCEGF 277


>gi|119193911|ref|XP_001247559.1| hypothetical protein CIMG_01330 [Coccidioides immitis RS]
          Length = 380

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 78/273 (28%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWEEKRKKQLRDLRRCEEETGRESFSEETQKKGDIDEDGSQILKPRK 124

Query: 98  ---VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------------------- 135
              +VAID+  M P+ G+   K D     +   + +A+  +                   
Sbjct: 125 NVRIVAIDLQPMAPLDGITTLKADITHPSTIPLLLKALDPDLYSENENGNTSTPSPSRPH 184

Query: 136 ---PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               D+VLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I
Sbjct: 185 PHPVDVVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLI 244

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              LK  F+KV   KP +SRA S+E F++ +GF
Sbjct: 245 YAQLKTVFEKVSVAKPRSSRASSLEAFVVCEGF 277


>gi|303283660|ref|XP_003061121.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457472|gb|EEH54771.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 197

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D +   A+ +G+R+R+A+KL+Q+N K+      R  +DL ++PG W QVA +       +
Sbjct: 1   DKFYYLAKEQGFRSRAAFKLVQLNRKYDFFSGARACMDLCAAPGGWLQVAVKYM---PMS 57

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRKI 153
           + +V +D+  ++ I G   F  D         +++    G   D+V+ D A    G+   
Sbjct: 58  STIVGVDLAPIKAIRGCTTFVDDITTQSCRAQLKRVTPDGVKYDVVMHDGAPNVGGNFAA 117

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           +     +L   +   A E L  GG F+ K F+    + +L  +++ F+KV   KPVASR 
Sbjct: 118 ESYTQAALTLDSLRLATEFLREGGWFVTKVFRSTEYHALLYSMQQLFKKVESTKPVASRG 177

Query: 214 ESVEMFLLAKGF 225
            S E++++  G+
Sbjct: 178 TSAEIYVVCIGY 189


>gi|327302420|ref|XP_003235902.1| tRNA methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326461244|gb|EGD86697.1| tRNA methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 341

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 33/216 (15%)

Query: 44  LEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVAARITGSNANNTR- 97
            + WRARSA+KL+ ++E+  +       S RR+VDL ++PGSWSQV +R+     +  R 
Sbjct: 51  EQNWRARSAFKLIHLDEEFDLFAHSDPDSVRRVVDLCAAPGSWSQVLSRVLIRGESFGRR 110

Query: 98  ----------------------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG- 134
                                 +V++D+  M P+ G+   + D     +   +  A+   
Sbjct: 111 QYELDRGAGCVDEDVQPRRDVKIVSVDLQPMAPLEGIITLQADITHPSTVPLLLNALNDE 170

Query: 135 ----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   +
Sbjct: 171 GEEEKVDLVLSDGAPDVTGLHDLDIYVQSQLLYAALNLAMGILRPGGTFVAKIFRGRDVD 230

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +   LK  F +V+  KP +SRA S+E F++ + ++
Sbjct: 231 VLYAQLKSVFGRVVVAKPRSSRASSLEAFVVCRDYK 266


>gi|85086230|ref|XP_957655.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Neurospora crassa
           OR74A]
 gi|28918749|gb|EAA28419.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Neurospora crassa
           OR74A]
          Length = 387

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 59/255 (23%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  + ++  R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFNLFENVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR----------------------------------------------VVAIDIL 104
                 R                                              +V+ID+ 
Sbjct: 65  KGEKFGRCAWQDREAKFRQQMLNVFPEKQDAQDEVQRVQATQESTPAPREQVKIVSIDLQ 124

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-------------PDLVLSDMAYPTIGHR 151
            + P+ G+   + D     +   + +A+  +              DLV+SD A    G  
Sbjct: 125 PISPLPGIITLRADITHPATVPLLLKALDPDFDPSTMNPQASHPVDLVISDGAPDVTGLH 184

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV   KP +S
Sbjct: 185 DLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKVFFEKVYVAKPRSS 244

Query: 212 RAESVEMFLLAKGFR 226
           RA SVE F++   F+
Sbjct: 245 RASSVEAFIVCINFQ 259


>gi|110669535|ref|YP_659346.1| ribosomal RNA large subunit methyltransferase J [Haloquadratum
           walsbyi DSM 16790]
 gi|121692027|sp|Q18E61|RLME_HALWD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|109627282|emb|CAJ53772.1| ribosomal RNA large subunit methyltransferase J [Haloquadratum
           walsbyi DSM 16790]
          Length = 256

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 6/193 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y  RA+ EG+R RSAYKL QI+    +      ++DLG++PG W QVAA   G +  
Sbjct: 4   RDEYYNRAKQEGYRTRSAYKLQQIDADAGVFGPGNTVIDLGAAPGGWLQVAAEAVGPSGT 63

Query: 95  NTRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHR 151
              V+ +D   +  +    V   + D  D  +   +R+ +  +  ++VLSDMA    G  
Sbjct: 64  ---VIGVDFQRIRDLESDIVDTIRGDMTDESTKNALRKRVNNSSVNVVLSDMAPNMTGEY 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH R++ L   A   A ++L  GGDF+VK F G    D    +   F+ V  ++P AS
Sbjct: 121 SVDHARSVHLARQAFSVATDILPAGGDFIVKVFDGRDLADFRQDVDTEFEYVKSIRPDAS 180

Query: 212 RAESVEMFLLAKG 224
           R  S E +L+ K 
Sbjct: 181 RDSSSEQYLVGKH 193


>gi|322710895|gb|EFZ02469.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Metarhizium anisopliae
           ARSEF 23]
          Length = 417

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 110/262 (41%), Gaps = 66/262 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  +  +  R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFNLFANVSRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNT------------------------------------------------RVVAID 102
            N                                                    ++VAID
Sbjct: 65  KNEQFGLKSWQDGEAHLRRSMLSVLPASTTPGGTSAVEAAIAAQHAASRPRDDVKIVAID 124

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIG------------------GNPDLVLSDMA 144
           +  + P+ G+   + D     +   +  A+                      DLVLSD A
Sbjct: 125 LQPISPLAGITTLQADITHPATVPLLLGALDPGRDAQRAAEGAAEGKASHPVDLVLSDGA 184

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV+
Sbjct: 185 PDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKIFFEKVV 244

Query: 205 HVKPVASRAESVEMFLLAKGFR 226
             KP +SRA S+E F++   FR
Sbjct: 245 VAKPRSSRASSMEAFIVCLNFR 266


>gi|255079048|ref|XP_002503104.1| predicted protein [Micromonas sp. RCC299]
 gi|226518370|gb|ACO64362.1| predicted protein [Micromonas sp. RCC299]
          Length = 200

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 5/194 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D +   A+ +G+R+R+++KL+Q+N K+      R  +DL ++PG W QVA +      
Sbjct: 2   RTDKFYYLAKEQGFRSRASFKLVQLNRKYDFFSGARACMDLCAAPGGWLQVAQKYM---P 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA--IGGNPDLVLSDMAYPTIGHR 151
            ++ +V +D+  ++PI G   F  D         +R+    G   D+V++D A    G+ 
Sbjct: 59  MSSLIVGVDLAPIKPIRGCTTFVDDITTQSCRAQLRRVTPEGTKYDIVMNDGAPNVGGNF 118

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             +     +L   +   A E L  GG F+ K F+    + +L  +++ F+KV   KPVAS
Sbjct: 119 AAESYTQAALTLDSLRLASEFLREGGWFVTKVFRSTEYHALLYSMQQLFKKVESTKPVAS 178

Query: 212 RAESVEMFLLAKGF 225
           R  S E++++  G+
Sbjct: 179 RGTSAEIYVVCIGY 192


>gi|156102665|ref|XP_001617025.1| ribosomal RNA large subunit methyltransferase J [Plasmodium vivax
           SaI-1]
 gi|148805899|gb|EDL47298.1| ribosomal RNA large subunit methyltransferase J, putative
           [Plasmodium vivax]
          Length = 266

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 12/220 (5%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
            KV N+    SS  W+ R I D YV +A+ + +R+R+AYKL++++ K+  L+ N+ I+D+
Sbjct: 27  PKVFNKKSSHSS-LWIQRQITDRYVLKAKNDNYRSRAAYKLIELDNKYMFLKKNKTILDI 85

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--------DLDSWE 126
           G  PGSW QV    T + +N   ++ ID   M+P+  + F   +                
Sbjct: 86  GCYPGSWCQVILERTKNYSNE--IIGIDKKIMDPLPNIHFIHAEIGGAKDNPNDSNLVDV 143

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +R+ + G   D++LSD A P +G++  DH+ +  L    T F  + +N+GG ++VK + 
Sbjct: 144 KLREILQGKKVDIILSDAAVPCVGNKIDDHMNSCELTLGITNFMEQYINMGGTYVVKMYL 203

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  T+++   LK  FQ V   KP ASR ES E++L+ + F
Sbjct: 204 GSQTDNLKTYLKTIFQFVNTTKPKASRRESREIYLVCRNF 243


>gi|171682198|ref|XP_001906042.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941058|emb|CAP66708.1| unnamed protein product [Podospora anserina S mat+]
          Length = 385

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 65/261 (24%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  + ++  R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFNLFENVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR---------------------------------------------------VV 99
            N    R                                                   +V
Sbjct: 65  KNEKFGRCAWEDREAQFRQRMLNLIPSASSQEDSQQETKQDVEMANTQDETTARPDVKIV 124

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG--------------GNPDLVLSDMAY 145
           +ID+  + P+ GV   + D     +   + +A+                  DLV+SD A 
Sbjct: 125 SIDLQPISPLPGVITLRADITHPATVPLLLKALDPSYDPETSTNQQAQHPVDLVISDGAP 184

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KV  
Sbjct: 185 DVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKVFFEKVHV 244

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SRA SVE F++   F+
Sbjct: 245 AKPRSSRASSVEAFIVCINFQ 265


>gi|212529056|ref|XP_002144685.1| tRNA methyltransferase, putative [Penicillium marneffei ATCC 18224]
 gi|210074083|gb|EEA28170.1| tRNA methyltransferase, putative [Penicillium marneffei ATCC 18224]
          Length = 429

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 110/276 (39%), Gaps = 81/276 (29%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHADPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWLEKRRRDKKALEKLEKESKNTETTTEEDSDDTEDESAILKPRKNV 124

Query: 98  -VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----------------------- 133
            +VAID+  M P+ G+   K D     +   + +A+                        
Sbjct: 125 KIVAIDLQPMAPLEGITMMKADITHPSTIPLLLRALDPEYYEGESGKQDPTIEPTTTKLP 184

Query: 134 ----GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
                  DLV+SD A    G   +D      L  AA   A+ +L  GG F+ K F+G   
Sbjct: 185 SRHPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDV 244

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           + +   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 245 DLLYAQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 280


>gi|154150934|ref|YP_001404552.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Methanoregula
           boonei 6A8]
 gi|189040312|sp|A7I848|RLME_METB6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|153999486|gb|ABS55909.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoregula boonei
           6A8]
          Length = 193

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 108/193 (55%), Gaps = 6/193 (3%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D    RA+ EG+R+R++YKL++I EK  +++ +  I+DLG++PGSW QV   +     
Sbjct: 6   SRDKVYLRAKHEGFRSRASYKLIEIQEKFAVIRRDDNIIDLGAAPGSWLQVLRTL----- 60

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            + RV+ ID+  +  I G++  + D  D    +  ++ +G    +V+ D A    GH+  
Sbjct: 61  TDGRVLGIDLNPIADIEGIETLEGDLTDPVVQKQAKEMLG-TVCIVVCDAAPKLSGHKSY 119

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R ++L E A  FA  +L  GG+F++K+FQG    ++L  ++  F  V      A+R 
Sbjct: 120 DQARAIALGEEALLFACNVLKPGGNFVIKSFQGADFPELLAAIQGQFYAVKTYSTKATRK 179

Query: 214 ESVEMFLLAKGFR 226
            S E++++AK F+
Sbjct: 180 GSTEIYIIAKNFK 192


>gi|224004992|ref|XP_002296147.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|209586179|gb|ACI64864.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 282

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 126/258 (48%), Gaps = 42/258 (16%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH------ 62
           S RG   + + R+ + SSR WL R   DPYV +A+ EG  +R+++KL +INE+       
Sbjct: 26  SIRGKHSQSQGRNIKQSSRTWLERQQKDPYVHQAKKEGLPSRASFKLKEINEETNTPQPK 85

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV---------- 112
           +++  N  ++DLG++PG WS  A+    + +    VVA+D+L +     V          
Sbjct: 86  RLIAPNMLVLDLGAAPGGWSLYASTQLVA-SQGGAVVAVDLLPLSTEGDVIGRIENNLHG 144

Query: 113 --KFFKFDFLDLDSWEFIRQAIGG------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
              F + DF +    + I  +          P L++SDMA    G  K D L+T++LCE 
Sbjct: 145 QFTFIQGDFTEKHVRDDIMDSFAQLSGNQTLPGLIVSDMAPHFTGDTKTDALQTINLCEQ 204

Query: 165 ATFFAL---------------EMLNIGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVK 207
           A  FA+                 L  GG FL K F  G  N+  ++  +K+ F+ V  +K
Sbjct: 205 ALTFAVGDDCFDNSYSPRDAKGTLASGGSFLCKYFSCGKENELDLMEAIKRAFRSVHVLK 264

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES EM+LL   F
Sbjct: 265 PKASRKESSEMYLLGLDF 282


>gi|312076799|ref|XP_003141023.1| ribosomal RNA methyltransferase [Loa loa]
 gi|307763813|gb|EFO23047.1| ribosomal RNA methyltransferase [Loa loa]
          Length = 244

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 14/218 (6%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN------RRI 71
           K++    + + +L +  +D + ++A+   +RARSAYKLL+INEK++I++          +
Sbjct: 23  KSKKSTATLK-YLRKQCSDEFSRKAREHSYRARSAYKLLEINEKYKIIEPGEFYFKCMVV 81

Query: 72  VDLGSSPGSWSQVAARITGSN-ANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIR 129
           VD+G++PGSW QV A I   N   +  V+ ID+  + P+ GV F    D     + E I+
Sbjct: 82  VDVGAAPGSWCQVVADIVQPNVYGDAFVLGIDLQPIMPVSGVNFLDLSDITAQKTHENIK 141

Query: 130 QAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE----MLNIGGDFLVKTF 184
           Q + G   D+V+SDMA    G R IDH R +SLC      +++     L   G FL K +
Sbjct: 142 QLLNGRSVDVVISDMAPNPTGDRGIDHERILSLCGIVLELSVKKSVIPLVRNGTFLCKIW 201

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
            G    + +  LK+ F KV  VKP ASR  S E++LLA
Sbjct: 202 DGPRREEFIERLKREFGKVYTVKPKASRDHSAEIYLLA 239


>gi|330926680|ref|XP_003301563.1| hypothetical protein PTT_13095 [Pyrenophora teres f. teres 0-1]
 gi|311323564|gb|EFQ90356.1| hypothetical protein PTT_13095 [Pyrenophora teres f. teres 0-1]
          Length = 386

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 110/253 (43%), Gaps = 58/253 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSAYKLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEEGWRARSAYKLLQLDEEFNLFDGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR-------------------------------------------VVAIDILDME 107
                 R                                           +VAID+  M 
Sbjct: 65  KGEIFGRGGWQEKQAAMRNQVLGLDNKGSMTEKREDAEVKEAAKPREGVRIVAIDLQPMS 124

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNP---------------DLVLSDMAYPTIGHRK 152
           P+ GV   + D     +   +  A+  +P               DLV+SD A    G   
Sbjct: 125 PLEGVTTMRADITHPSTIPLLLAALDPSPTSSTPSANTPTTSPVDLVISDGAPDVTGLHD 184

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F++V   KP +SR
Sbjct: 185 LDIYVQSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKIVFERVRVAKPRSSR 244

Query: 213 AESVEMFLLAKGF 225
           A S+E F++ +GF
Sbjct: 245 ASSIEAFVVCEGF 257


>gi|302407548|ref|XP_003001609.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Verticillium
           albo-atrum VaMs.102]
 gi|261359330|gb|EEY21758.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Verticillium
           albo-atrum VaMs.102]
          Length = 398

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 110/252 (43%), Gaps = 56/252 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFDLFHGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR-------------------------------------------VVAIDILDME 107
                 R                                           +V+ID+  + 
Sbjct: 65  KGEKFGRTAWQDREASFRQQMLKIFPSGASDTDQPMTTPASATSPRDDVKIVSIDLQPIS 124

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGN-------------PDLVLSDMAYPTIGHRKID 154
           P+ GV   + D     +   + +A+  +              DLV+SD A    G   +D
Sbjct: 125 PLPGVVTLRADITHPATVPLLLKALDPDYDATSQSKNAAHPVDLVISDGAPDVTGLHDLD 184

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SRA 
Sbjct: 185 IYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKVFFEKVIVAKPRSSRAS 244

Query: 215 SVEMFLLAKGFR 226
           SVE F++   F+
Sbjct: 245 SVEAFIVCINFQ 256


>gi|308812406|ref|XP_003083510.1| Putative SAM-dependent rRNA methyltransferase SPB1 (ISS)
           [Ostreococcus tauri]
 gi|116055391|emb|CAL58059.1| Putative SAM-dependent rRNA methyltransferase SPB1 (ISS)
           [Ostreococcus tauri]
          Length = 948

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 5/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y   A+ +G+R+R+A+KL+Q+N K+  L   R  +DL ++PG W QVA +    
Sbjct: 8   KHRLDKYYYLAKEQGFRSRAAFKLVQLNRKYDFLSKARACMDLCAAPGGWLQVAQKYMPM 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTIG 149
           N   + +V +D+  + PI GV  F  D         +R+A   G   D+V+ D A    G
Sbjct: 68  N---SLIVGVDLAPIRPIRGVTTFVEDITTQSCRAALRRATPKGTQYDVVIHDGAPNVGG 124

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +   +     +L   +   A E L  GG F+ K F+    + +L   ++ F+KV   KPV
Sbjct: 125 NFAKESYTQAALTLDSLRLATEFLGQGGWFVTKVFRSVEYHALLYACRQLFKKVESTKPV 184

Query: 210 ASRAESVEMFLLAKGF 225
           ASR  S E++++  G+
Sbjct: 185 ASRGTSAEIYVVCSGY 200


>gi|302511111|ref|XP_003017507.1| hypothetical protein ARB_04388 [Arthroderma benhamiae CBS 112371]
 gi|291181078|gb|EFE36862.1| hypothetical protein ARB_04388 [Arthroderma benhamiae CBS 112371]
          Length = 768

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 24/201 (11%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+ ++ ++DL ++P        
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAP-------- 55

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                       V +D+  ++PI  V  F+ D         IRQ       D VL D A 
Sbjct: 56  ------------VGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAP 103

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 104 NVGTAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEA 163

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 164 TKPPSSRNVSAEIFVVCLGFK 184


>gi|242764601|ref|XP_002340808.1| tRNA methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724004|gb|EED23421.1| tRNA methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 425

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 109/277 (39%), Gaps = 82/277 (29%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHADPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------------ 97
           +R+     +  R                                                
Sbjct: 65  SRVLIKGESFGRRAWLEKRRRDKKALEKVGKESENTQEGEQDDDDTEDESIILKPRKNVK 124

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG------------------------ 133
           +VAID+  M P+ G+   K D     +   + +A+                         
Sbjct: 125 IVAIDLQPMAPLEGITMMKADITHPSTIPLLLRALDPEYYEEGSEKRDTPQSNTTTSTKL 184

Query: 134 -----GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
                   DLV+SD A    G   +D      L  AA    + +L  GG F+ K F+G  
Sbjct: 185 PSRHPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLTIGVLRPGGKFVAKIFRGRD 244

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            + +   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 245 VDLLYAQLRTVFEKVSVAKPRSSRASSLEAFVVCEGF 281


>gi|307110257|gb|EFN58493.1| hypothetical protein CHLNCDRAFT_19573 [Chlorella variabilis]
          Length = 358

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 4/182 (2%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           G+R+R+++KL+Q+N  +  L   R ++DL ++PG W QVA +        + V+ +D++ 
Sbjct: 1   GYRSRASFKLIQLNRTYYFLSGARSLLDLCAAPGGWCQVAVKNMPVG---SLVIGVDLVA 57

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           ++PI GVK    D       + I++  GG+  D+VL D A    G    +      L   
Sbjct: 58  IKPIRGVKTLVGDITTQKCRQAIKKETGGSLIDVVLHDGAPNVGGAWATEAYSQAWLVLE 117

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A   A ++L   G F+ K F+    + +L   ++ F KV   KPVASR+ S E+F++ +G
Sbjct: 118 ALRMATDVLAPKGTFVTKVFRSKDYSPLLYAFQQLFTKVEATKPVASRSTSAEIFVVCRG 177

Query: 225 FR 226
           ++
Sbjct: 178 YK 179


>gi|123449199|ref|XP_001313321.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
 gi|121895200|gb|EAY00392.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
          Length = 250

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 2/194 (1%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y + A  EGWRARSAYKL+Q+  +   L+ + R+VDL S+PGSWSQV A++     
Sbjct: 7   RRDVYKKTAVEEGWRARSAYKLIQVESEMHFLKDSTRVVDLCSAPGSWSQVCAKLMPET- 65

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRK 152
           +  ++++ID+  + PI GV   + D  D+ + E +   + G   D VL+D A  TI   +
Sbjct: 66  DARKIISIDLRRIVPIDGVTELRGDITDVKTAENVISLLDGNKADAVLADGAPDTIIRIE 125

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D     ++ +A+   A  +L  GG F+ K F+  +   +L +    F K+   KP A R
Sbjct: 126 FDEYVQHNIVKASLTIATMVLREGGTFVSKIFRTKSLPKLLAIFGCFFSKITMCKPRACR 185

Query: 213 AESVEMFLLAKGFR 226
             SVE F++ +GF+
Sbjct: 186 LSSVESFIVCQGFK 199


>gi|221060839|ref|XP_002261989.1| ribosomal RNA methyltransferase [Plasmodium knowlesi strain H]
 gi|193811139|emb|CAQ41867.1| ribosomal RNA methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 266

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 123/220 (55%), Gaps = 12/220 (5%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
            KV N+    SS+ W+ R I D YV +A+ + +R+R+AYKL++++ K+  L+ N+ I+D+
Sbjct: 27  PKVLNKKSSHSSQ-WIQRQITDRYVLKAKNDNYRSRAAYKLIELDNKYMFLKKNKIILDI 85

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--------DLDSWE 126
           G  PGSW QV    T + +N   ++ ID   M+P+  + F   +          +     
Sbjct: 86  GCYPGSWCQVILERTKNYSNE--IIGIDKKIMDPLPNIHFIHAEIGGAKDSTNHNNLVDV 143

Query: 127 FIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            +R+ + G   D++LSD A P +G++  DHL +  L    T F  + +N+GG ++VK + 
Sbjct: 144 KLREILQGKKVDIILSDAAVPCVGNKIDDHLNSCELTLGITNFMEQYINMGGTYVVKMYL 203

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  T+++   LK  FQ V   KP ASR ES E++L+ + F
Sbjct: 204 GSQTDNLKTYLKTIFQFVNTTKPKASRRESREVYLVCRNF 243


>gi|46580665|ref|YP_011473.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602033|ref|YP_966433.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           DP4]
 gi|81566318|sp|Q729T9|RLME_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513904|sp|A1VC40|RLME_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|46450084|gb|AAS96733.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562262|gb|ABM28006.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311234393|gb|ADP87247.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
           RCH1]
          Length = 204

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +I+ + +I +   +++DLG++PGSWS  AA   G 
Sbjct: 2   KKYRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGP 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTI 148
                RV+A D+ + + +    V F + +  +  +++E +   I    D+V+SDMA  T 
Sbjct: 62  RG---RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEI-APFDVVISDMAPRTT 117

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G R  D  R++ LC  A   A   L  GG F+VK F G    +++  +++ F  V   KP
Sbjct: 118 GTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKP 177

Query: 209 VASRAESVEMFLLAKGFR 226
            +SRAES E F +  G+R
Sbjct: 178 KSSRAESKETFYVCLGYR 195


>gi|239907722|ref|YP_002954463.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           magneticus RS-1]
 gi|239797588|dbj|BAH76577.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
           magneticus RS-1]
          Length = 216

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 105/194 (54%), Gaps = 5/194 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+ + + ARS YKL +I ++ ++L     ++DLG+ PGSWS  AA+  G + 
Sbjct: 7   YRDHYFNKAKQDNYPARSVYKLEEIEKQSRLLTPGAAVLDLGACPGSWSLYAAKRVGPSG 66

Query: 94  NNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
              RV+A+D+          V +   D L+            G  D+VLSDMA  TIGH+
Sbjct: 67  ---RVLAVDLNPAATAFPGNVTYLIGDMLEPGPDIAEAFERFGPFDVVLSDMAPKTIGHK 123

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ LCEAA   A+  L  GG F+VK FQG  +      L+++F  V   KP +S
Sbjct: 124 FTDQARSLELCEAALSVAVTRLKPGGAFVVKIFQGPDSPAFQKGLRQYFSAVRVAKPKSS 183

Query: 212 RAESVEMFLLAKGF 225
           RAES E+F +A GF
Sbjct: 184 RAESKEIFFVATGF 197


>gi|224367518|ref|YP_002601681.1| putative ribosomal RNA methyltransferase 1 (23S rRNA methylase)
           [Desulfobacterium autotrophicum HRM2]
 gi|259494563|sp|C0QGP2|RLME_DESAH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|223690234|gb|ACN13517.1| putative ribosomal RNA methyltransferase 1 (23S rRNA methylase)
           [Desulfobacterium autotrophicum HRM2]
          Length = 203

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 11/212 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +KNR      ++       D Y Q+A+ E + ARS YKL++I ++ Q+++    ++DLG 
Sbjct: 1   MKNRGRTKPKKN----QWADHYTQKARDENYPARSVYKLMEIQKRFQVIKKGASVLDLGC 56

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGG 134
           +PGSW   AA +TG +    R V ID+  ++            D  +++S   + +A+G 
Sbjct: 57  APGSWLIHAAELTGPSG---RAVGIDLKPVDAALPPNAIAHTGDIFEMEST--LGEAVGQ 111

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
           + D V+SDMA  T G + ID  R+ +LCEAA   A  +L  GG+F+ K FQG        
Sbjct: 112 DYDAVISDMAPATTGRKDIDAARSFALCEAALRVACGLLADGGNFVCKIFQGAEFKQFEN 171

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +K  F      KP + R  S E++++  G +
Sbjct: 172 QVKSRFTSHKIFKPDSCRKSSKEIYIIGLGKK 203


>gi|17553474|ref|NP_499776.1| hypothetical protein F45G2.9 [Caenorhabditis elegans]
 gi|9910849|sp|O62251|RRMJ2_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase F45G2.9;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|3877251|emb|CAB07618.1| C. elegans protein F45G2.9, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 214

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 10/215 (4%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
            +  QG+   ++ R   D +  +A+   +RARSA+KL++INEK + L+    ++D+G +P
Sbjct: 4   TKKSQGNLHKYIQRQSTDEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAP 63

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF-DFLDLDSWEFIRQAIGGN-P 136
           GSW QV  +       N     +D+ ++ PI G       D  D      IR+ +     
Sbjct: 64  GSWLQVVVQKCP----NGYASGVDLQNVLPIRGADILSLSDITDPAVKLKIREKLAHRQV 119

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATF-FALEM---LNIGGDFLVKTFQGGTTNDI 192
           D+VLSDMA    G    DHLR + LC +    F++E    L   G +L K + G    + 
Sbjct: 120 DVVLSDMAPNPTGDNATDHLRLIELCRSVFRLFSVENEIELVKNGVYLCKIWDGSARAEF 179

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +  L   F  V  VKP A R  S E++L  + F+K
Sbjct: 180 VRELSDRFSTVKTVKPTACRDNSAELYLFCRNFKK 214


>gi|312216350|emb|CBX96301.1| similar to tRNA (uridine-2'-O-)-methyltransferase TRM7
           [Leptosphaeria maculans]
          Length = 388

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 110/253 (43%), Gaps = 58/253 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSAYKLLQ++E+  + +   R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEEGWRARSAYKLLQLDEEFNLFEGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR----------------------------------------------VVAIDIL 104
                 R                                              +VAID+ 
Sbjct: 65  KGEKFGRAGWQEKQAAARNYVLGLDNTKTPAPAEEEKKDIQPAERPRPREGVRIVAIDLQ 124

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------------PDLVLSDMAYPTIGHRK 152
            M P+ GV   + D     +   + +A+  +             DLV+SD A    G   
Sbjct: 125 PMSPLEGVTTMRADITHPSTIPLMLKALDPDTYDPTTPQTSSPVDLVISDGAPDVTGLHD 184

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F +V   KP +SR
Sbjct: 185 LDIYVQSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKTVFDRVRVAKPRSSR 244

Query: 213 AESVEMFLLAKGF 225
           A S+E F++ +GF
Sbjct: 245 ASSIEAFVVCEGF 257


>gi|283853680|ref|ZP_06370911.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp.
           FW1012B]
 gi|283570921|gb|EFC18950.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp.
           FW1012B]
          Length = 201

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/194 (40%), Positives = 106/194 (54%), Gaps = 5/194 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+LE + ARS YKL +I ++ ++L    +++DLG+ PGSW+   A+  G   
Sbjct: 4   YRDHYFNKAKLENYPARSVYKLQEIEKQSRLLVPGAKVLDLGACPGSWTLFTAKRIGPQG 63

Query: 94  NNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
              RV+AID+     E    V +   D LD         A  G  D+V+SDMA  T G +
Sbjct: 64  ---RVLAIDLNPAGTEFPDNVTYLLGDMLDPGPDILEAFAAFGPFDVVISDMAPQTTGIK 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ LCEAA   A E L  GG F+VK FQG      L  L++ FQKV   KP +S
Sbjct: 121 FTDQCRSLELCEAALSVARERLRPGGGFVVKIFQGPDAPAYLKGLREFFQKVRVAKPQSS 180

Query: 212 RAESVEMFLLAKGF 225
           RAES E+F +A GF
Sbjct: 181 RAESKEIFYVATGF 194


>gi|102139739|gb|ABF69946.1| FtsJ-like methyltransferase family protein [Musa acuminata]
          Length = 847

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ K++ L S R I+DL ++PG W QVA R    
Sbjct: 7   KQRQDKFYYLAKEQGYRSRAAFKLLQLDAKYRFLPSARSILDLCAAPGGWLQVAVRHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLSDMAYPT 147
            +    V+ +D+  + P+ G      D         I++ +  N      +VL D +   
Sbjct: 67  GSF---VIGVDLFPIRPVRGAHALVEDITTPRCRAAIKRLMDSNGCSAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     SL   +   A   L   G F+ K F+    + I+  LK+ F+KV   K
Sbjct: 124 GGAWAQEATSQSSLVVDSVRLATNFLAPKGTFVTKVFRSQDYSAIIYCLKQLFEKVEVTK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           PVASR+ S E++++   ++
Sbjct: 184 PVASRSTSAEIYVIGLRYK 202


>gi|19113236|ref|NP_596444.1| mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|9911005|sp|P78860|YBOF_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase C2G2.15c;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2956782|emb|CAA17895.1| mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)
           [Schizosaccharomyces pombe]
          Length = 218

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 16/211 (7%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  +   D Y ++++++ +R+R+AYKL+++N K++ +     ++D+G +PGSWSQVA ++
Sbjct: 10  WAAKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQVAKKL 69

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-------------GN 135
            G+     +V+ IDI  + P  GV     D  D ++   + +A+                
Sbjct: 70  VGNKG---KVIGIDIQHIAPPEGVLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCRV 126

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D V+SDM +   G R  DH  +M LC +A   AL  L   G F+ K + G    D+  L
Sbjct: 127 VDAVISDMLHKATGIRIRDHALSMELCASALHVALTFLKSNGSFICKFYMGDEDADLQNL 186

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           LK HF+ V  +KP AS  ES E + +    +
Sbjct: 187 LKSHFRFVQVMKPKASLKESREAYFVCLERK 217


>gi|268575662|ref|XP_002642810.1| Hypothetical protein CBG21206 [Caenorhabditis briggsae]
          Length = 210

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 17/211 (8%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           ++ R   D +  +A+   +RARSA+KL++INEK + L+    +VD+G +PGSW QV    
Sbjct: 4   YIQRQSTDEFTVKAREHNYRARSAFKLIEINEKFKFLRPGITVVDVGCAPGSWLQVVVDK 63

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI---GGNPDLVLSDMA 144
                 N   + +D+ ++ PI G     + D    +    IR+ +    G  D+VLSDMA
Sbjct: 64  CP----NGYALGLDLQNVLPIRGADILSQSDVTSPEIQAKIREKLQMRQGTVDVVLSDMA 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFF---------ALEMLNIGGDFLVKTFQGGTTNDILCL 195
               G  + DHLR + LC               A E+    G FL K + G    + +  
Sbjct: 120 PNPTGDSETDHLRLIDLCRTVFRLFSKENTVENAFELSRKNGVFLCKIWDGSGRGEFVRE 179

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F  V  +KP+A R  S E++L  +GFR
Sbjct: 180 LSDRFSMVKTMKPMACRDMSAELYLFCRGFR 210


>gi|297569182|ref|YP_003690526.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925097|gb|ADH85907.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 197

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 8/199 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y ++A+ EG+ ARS YKL +  +K ++L+   +++DLG  PGSWS  AAR+ G 
Sbjct: 2   KQVQDFYFRKARKEGYPARSVYKLEEAQQKFKLLRPGDKVLDLGCQPGSWSIYAARVVG- 60

Query: 92  NANNTRVVAIDIL--DMEPILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
                 VV +DI    ++   G    F   D       E +R        +++SDMA  T
Sbjct: 61  --RQGLVVGVDITAGPIKTRGGAPFHFVLGDITRESVQEKVRGIC-SRYRVLISDMAPRT 117

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G+R  D  +++ L       A   L  GG    K F+G    +++  +++ F KV   K
Sbjct: 118 TGNRWADQQQSLRLARTVLELAANWLQPGGHLYCKVFEGEDFQELVADVRRSFGKVKVFK 177

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SR ES E+FLLA  ++
Sbjct: 178 PKSSRTESREVFLLAMDYK 196


>gi|220903814|ref|YP_002479126.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868113|gb|ACL48448.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 102/199 (51%), Gaps = 5/199 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           + +   D Y  +A+ E + ARS YKL +++ K ++L+  ++I+DLG++PGSWS  AA   
Sbjct: 13  IMKEYRDHYFLKAKRENYPARSVYKLKELDAKFRLLRPGQKILDLGAAPGSWSLGAAEKV 72

Query: 90  GSNANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
           GS      V+A DI   E      V F + D  +       R    G  D V+SDMA  T
Sbjct: 73  GSRG---LVLACDIQSTETAFPPQVIFMQEDVFNRSPAFEARLEELGPFDHVISDMAPRT 129

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G R  D  R++ L   A   A   L  GG F+VK F G    ++L  ++K F  V   K
Sbjct: 130 TGTRFTDQARSLDLAVEALAVACLHLKQGGGFVVKIFMGPDVQELLAPMRKAFTTVKSFK 189

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SRAES E F +  GFR
Sbjct: 190 PKSSRAESKETFFVGLGFR 208


>gi|297744408|emb|CBI37670.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+  G+R+R+A+KL+Q++ K+  L+S+R ++DL ++PG W Q A      
Sbjct: 7   KHRLDKFYHLAKEHGYRSRAAWKLVQLDSKYNFLRSSRAVLDLCAAPGGWMQAAVERVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            +    ++ +D+  + P+ G    + D         +++ +        D+VL D +   
Sbjct: 67  GSF---ILGVDLNPIAPVRGAISIEEDITKPACKARVKKLMSEYGCAAFDIVLHDGSPNI 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     +L   A   A + L   G F+ K F+    N +L  LK+ F+KV   K
Sbjct: 124 GGAWTQEATAQNALVIDALRLATQFLAPKGAFVTKVFRSQDYNSVLYCLKQLFEKVEVDK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E+F+L   ++
Sbjct: 184 PAASRSTSAEIFVLGLKYK 202


>gi|308273424|emb|CBX30026.1| Ribosomal RNA large subunit methyltransferase J [uncultured
           Desulfobacterium sp.]
          Length = 208

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +     +  W      D Y + A+ E + ARS YKL ++  ++++++   R++DLG  PG
Sbjct: 10  KRLSPKANRW-----EDHYSRLAKKENYPARSVYKLQELQSRYKLIKKGGRVLDLGCYPG 64

Query: 80  SWSQVAARITGSNANNTRVVAIDI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           SW+  A+ + G       VV ID+  LD++       ++ D L++D+   +  +IG   D
Sbjct: 65  SWTIYASDLVGQKGT---VVGIDLKKLDIKIPSNALVYQCDILNIDNSMLL--SIGNKFD 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           +V+SDMA  T G++ +D +R+  LC AA   A  +L   G FL K FQG   N  L ++K
Sbjct: 120 IVISDMAPATTGNKSVDAVRSYDLCLAALDVANNVLLHNGSFLCKIFQGEDFNKFLEMVK 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F      KP +SR  S E++++  G +
Sbjct: 180 AAFNTYKIFKPQSSRKLSKEIYIIGLGKK 208


>gi|303325468|ref|ZP_07355911.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
           3_1_syn3]
 gi|302863384|gb|EFL86315.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
           3_1_syn3]
          Length = 210

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +++ K ++L+   +++DLG++PGSWS   A   GS
Sbjct: 2   KEYRDHYFLKAKRENYPARSVYKLKELDAKFRLLKPGMKVLDLGAAPGSWSLGVAEKVGS 61

Query: 92  NANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 V+A DI   E      V F + D     +    + A  G  DLV+SDMA  T G
Sbjct: 62  KG---LVLACDIQSTETAFPPQVLFMQEDVFQRSAAFEAKLAELGPFDLVISDMAPRTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            R  D  R++ L   A   A   L  GG+F+VK F G    D+L  ++K F  V   KP 
Sbjct: 119 TRFTDQARSLELTLEALAVACLHLKQGGNFVVKIFMGPDIQDLLTPMRKAFSSVKSFKPK 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SRAES E F    GFR
Sbjct: 179 SSRAESKETFFTGLGFR 195


>gi|219117612|ref|XP_002179598.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408651|gb|EEC48584.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 209

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 8/194 (4%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQSNRR-IVDLGSSPGSWSQVAARITGSNANNT 96
           Y Q A+ +G R+R+A+KL QIN K+ +L+  +  ++DL ++PG W+QVAAR    +    
Sbjct: 1   YSQVAKEQGLRSRAAFKLTQINRKYPVLEKAQNAVLDLCAAPGGWTQVAARTCNKSVP-- 58

Query: 97  RVVAIDILDMEPILGVKFFK---FDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRK 152
            ++A+DIL +      +       D         I+ A+ G P D+VL D A        
Sbjct: 59  -IIAVDILPIRSFANAQNITTLIGDITTDKCKSDIKHALQGRPVDVVLHDGAPNIGADYG 117

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D      +   A   A + L  GG F+ K ++         LL++ FQ V   KP ASR
Sbjct: 118 KDAYEQNEIALHALRCATQHLVKGGTFITKVYRSRDYASFQWLLQQLFQGVQAFKPKASR 177

Query: 213 AESVEMFLLAKGFR 226
           A+S E+FL+ + ++
Sbjct: 178 AQSAEIFLVCEKYK 191


>gi|124486074|ref|YP_001030690.1| hypothetical protein Mlab_1254 [Methanocorpusculum labreanum Z]
 gi|158512817|sp|A2SSW7|RLME_METLZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|124363615|gb|ABN07423.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocorpusculum
           labreanum Z]
          Length = 203

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D   ++A  +G+RARSAYKL+ INE+  +++    +VDLG++PGSW QV          
Sbjct: 7   KDNVYRKAMRDGYRARSAYKLIDINERFNVIRQTDNVVDLGAAPGSWLQVL-----KTMT 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             ++  +D+  + P+  V     DF D      IR+A+    ++V+ D +    G +  D
Sbjct: 62  EGQLCGVDLNPIIPLENVITITGDFTDPAIQAKIREAMPL-VNVVVCDASPHLSGAKAYD 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R M L E A  FA  +L  GG+ ++K+FQG   N++L L+K+ F  V  ++  A+R  
Sbjct: 121 QARVMGLNEEALNFASNLLKQGGNLVMKSFQGSDFNELLALVKEKFYSVRVIRSTATRRG 180

Query: 215 SVEMFLLAKGF 225
           S E +++AK F
Sbjct: 181 STECYIVAKNF 191


>gi|317154308|ref|YP_004122356.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944559|gb|ADU63610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 199

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 5/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ E + ARS YKL +++++  + +  + ++DLG++PGSW+Q A    G 
Sbjct: 2   KQYQDKYFKRAKKENYAARSVYKLKEMDKRFGLFKKGQTVLDLGAAPGSWTQYAGERVGP 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             +   V+A+DI D +      V F + D                  DLV+SDMA  T G
Sbjct: 62  EGH---VLAVDIQDTKHTFAANVTFLQADVFSDSPELLAAMEPLAPFDLVISDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D   ++ LCE A   A + L  GG F VK F+ G T      L+ HF+K+ H KP 
Sbjct: 119 IKFADQANSLELCERAFEVAAKRLKRGGHFAVKIFESGETKAYTDSLRPHFEKIKHFKPY 178

Query: 210 ASRAESVEMFLLAKGF 225
           +SR+ES E+F++A GF
Sbjct: 179 SSRSESKEIFIVALGF 194


>gi|302758118|ref|XP_002962482.1| hypothetical protein SELMODRAFT_141188 [Selaginella moellendorffii]
 gi|302758956|ref|XP_002962901.1| hypothetical protein SELMODRAFT_78506 [Selaginella moellendorffii]
 gi|300169343|gb|EFJ35945.1| hypothetical protein SELMODRAFT_141188 [Selaginella moellendorffii]
 gi|300169762|gb|EFJ36364.1| hypothetical protein SELMODRAFT_78506 [Selaginella moellendorffii]
          Length = 830

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+ +G+R+R+A+KL+Q++ K+  L S   ++DL ++PG W QVA      
Sbjct: 8   KHRLDRFYYLAKEQGYRSRAAFKLVQLDRKYGFLSSAHSVLDLCAAPGGWMQVAVEKMPV 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            +    V+ +D++ + P+ G    + D         I + +  N     D+VL D +   
Sbjct: 68  RSV---VIGVDLVPIRPVRGALSLQGDITTPKCASDIGKILDQNGLRMVDVVLHDGSPNV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   SL   +   A + L   G F+ K F+    N +    ++ F KV   K
Sbjct: 125 GGAWAKEAMTQSSLVLDSLKLATKFLAPKGTFVTKVFRSQDYNALKYAFEQLFAKVEVTK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P+ASR+ S E++++   +
Sbjct: 185 PIASRSTSAEIYVVGLKY 202


>gi|302758756|ref|XP_002962801.1| hypothetical protein SELMODRAFT_404107 [Selaginella moellendorffii]
 gi|300169662|gb|EFJ36264.1| hypothetical protein SELMODRAFT_404107 [Selaginella moellendorffii]
          Length = 814

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+ +G+R+R+A+KL+Q++ K+  L S   ++DL ++PG W QVA      
Sbjct: 8   KHRLDRFYYLAKEQGYRSRAAFKLVQLDRKYGFLSSAHSVLDLCAAPGGWMQVAVEKMPV 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            +    ++ +D++ + P+ G    + D         I + +  N     D+VL D +   
Sbjct: 68  RSV---IIGVDLVPIRPVRGALSLQGDITTPKCASDIGKILDQNGLRMVDVVLHDGSPNV 124

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   SL   +   A + L   G F+ K F+    N +    ++ F KV   K
Sbjct: 125 GGAWAKEAMTQSSLVLDSLKLATKFLAPKGTFVTKVFRSQDYNALKYAFEQLFAKVEVTK 184

Query: 208 PVASRAESVEMFLLAKGF 225
           P+ASR+ S E++++   +
Sbjct: 185 PIASRSTSAEIYVVGLKY 202


>gi|254565435|ref|XP_002489828.1| Mitochondrial 2' O-ribose methyltransferase, required for
           methylation of U(2791) in 21S rRNA [Pichia pastoris
           GS115]
 gi|238029624|emb|CAY67547.1| Mitochondrial 2' O-ribose methyltransferase, required for
           methylation of U(2791) in 21S rRNA [Pichia pastoris
           GS115]
 gi|328350243|emb|CCA36643.1| ribosomal RNA large subunit methyltransferase E [Pichia pastoris
           CBS 7435]
          Length = 298

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 126/292 (43%), Gaps = 70/292 (23%)

Query: 1   MVKPPGSSSRRGLTQK---VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQ 57
           M++ P  S  R    +   +K +    SSR WL R  +DP+ + A  +  ++R+A+KLLQ
Sbjct: 1   MIQHPSVSLLRRQFARFVSLKVKGKSSSSRKWLERQSSDPFTKEAHAKALKSRAAFKLLQ 60

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I+EK  I +  + +VDLG +PG+WSQVAA    S  N   ++ IDIL  EP  GV   + 
Sbjct: 61  IHEKFNIFRPGQNVVDLGFAPGAWSQVAADKVTSRGN---ILGIDILACEPPKGVSSMQA 117

Query: 118 DFLDLDSWEFIRQAI-----------------------------------------GGNP 136
           + L   + E I+                                                
Sbjct: 118 NILSKTTHEMIKTHFYQLNMDKDLRKLQEIEPIADGPSYFQAEVDDNLEISNKQKQQFPV 177

Query: 137 DLVLSDMA---------------------YPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+V+SDM                        T G    DHL ++ LC+AA   A+++L +
Sbjct: 178 DVVMSDMCEPFFQSSGFGSAITNKPFHRMANTTGMAFKDHLLSIDLCDAALILAIDILKV 237

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            G FL K FQG     +   LKK F+ V   KP ASR ES E + +   F+K
Sbjct: 238 NGTFLCKFFQGKEDKLLEARLKKCFKVVQRYKPPASRKESKENYFIC--FQK 287


>gi|119390695|pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
           In Complex With S-Adenosylmethionine
 gi|119390696|pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
           In Complex With S-Adenosylmethionine
          Length = 196

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 7/186 (3%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN-----TRVVAI 101
           +R+RSA+KLL++NE+HQIL+   R++D G++PG+WSQVA +   +   +       V+ +
Sbjct: 2   YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61

Query: 102 DILDMEPILGVKFFK-FDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           D+L + P+ G  F    D  D  + + I + + G   D++LSDMA    G R +DH R +
Sbjct: 62  DLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLI 121

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           SLC        ++L  GG FL KT+ G  +  +   L + FQ V  +KP ASR ES E++
Sbjct: 122 SLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVY 181

Query: 220 LLAKGF 225
            LA  +
Sbjct: 182 FLATQY 187


>gi|148292181|dbj|BAF62896.1| putative ftsj [uncultured bacterium]
          Length = 210

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 4/205 (1%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
             ++R WL  H  DP+V+RA+ E +R+R+A+KL +I+ + ++ +    +++LG++PG W+
Sbjct: 2   TAAARRWLRAHAADPFVRRARRENYRSRAAFKLAEIDRRERLCRRGMTVLELGAAPGGWT 61

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLS 141
           Q              VVA+D   +  + GV+    D  D  + + I  A G G   L+LS
Sbjct: 62  QYVRERVLPGGV---VVAVDRAPLADLPGVQVVNGDAGDEMTRKKIITACGAGRAHLLLS 118

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           DMA    G    D  R  +L + A   A + L   G  LVK FQG  +  +     + F 
Sbjct: 119 DMAPDLTGVAATDQARGAALVDIALAVARDCLRADGVMLVKFFQGAESAAVRRRCGEMFG 178

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +V  VKP ASR  S E +LL +  +
Sbjct: 179 RVKSVKPAASRGRSREQYLLCRALK 203


>gi|312076873|ref|XP_003141055.1| hypothetical protein LOAG_05470 [Loa loa]
 gi|307763781|gb|EFO23015.1| hypothetical protein LOAG_05470 [Loa loa]
          Length = 335

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 22/201 (10%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRAR                +  R+VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRAR----------------NVHRVVDLCAAPGSWSQVLSKKVY 48

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMA 144
                    + R+VA+D+  M P+ GV   + D  +  + E I     G   DLV+ D A
Sbjct: 49  FAEDEGRRKDIRIVAVDLQPMSPLPGVIQLQGDITETSTAEKIISYFEGLKADLVVCDGA 108

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  AA   A  +L   G F+ K F+      +   LK  F++V 
Sbjct: 109 PDVTGLHALDEYMQSQLVLAALNIATFVLKETGTFVAKVFRARDITLLYAQLKIFFKEVY 168

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR  S E F++ K F
Sbjct: 169 CAKPRSSRQSSCEAFVVCKEF 189


>gi|317484651|ref|ZP_07943554.1| FtsJ-like methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316924125|gb|EFV45308.1| FtsJ-like methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 204

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +I+ + +I +   +++DLG++PGSWS  AA   G+
Sbjct: 2   KEYRDHYFLKAKQENYPARSVYKLKEIDGRFKIFRKGMKVLDLGAAPGSWSLGAAERVGA 61

Query: 92  NANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                +V+A DI     +    V+F + D          + A  G   +V+SDMA  T G
Sbjct: 62  QG---KVLACDIQSTVTVFPPNVEFHQEDVFQRSEAFERQLAETGPFHVVMSDMAPQTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ LC  A   A + L  GG F+VK F G    ++L  ++  F +V   KP 
Sbjct: 119 TKFTDQARSLELCLEALAVAEKYLVKGGSFVVKIFMGPDVGELLKGMRPRFARVTSFKPQ 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR ES E F +  GF+
Sbjct: 179 SSRVESKETFFVGLGFK 195


>gi|161528903|ref|YP_001582729.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosopumilus maritimus
           SCM1]
 gi|226705297|sp|A9A3M9|RLME_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160340204|gb|ABX13291.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosopumilus maritimus
           SCM1]
          Length = 197

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y + A  +G+R+R+AYKL ++N+ ++I+     ++DLG +PG W+Q+A ++ G   
Sbjct: 7   RKDHYRKLAHEQGFRSRAAYKLKELNQSYRIIGPGFYVLDLGCAPGGWTQMAIKLAG--- 63

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
           N  +V+ ID+  +E I G +  + D  D +  + +        + V+ D++    G+  +
Sbjct: 64  NQGKVMGIDLSYVEEIPGAEILRGDIEDENVVDDVMNYFERKVNAVICDLSPKVSGNWSV 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH + +SL    T    ++L   G+ + K F G  + +    +KK F ++   KP ASR 
Sbjct: 124 DHAKQISLNYDCTKIMDKVLAHKGNAVFKVFDGEYSMEFRDYVKKKFARINLTKPKASRK 183

Query: 214 ESVEMFLLAKGF 225
           +S E++ +  GF
Sbjct: 184 QSSELYYVCLGF 195


>gi|312136699|ref|YP_004004036.1| 23S rRNA um-2552 2'-o-methyltransferase [Methanothermus fervidus
           DSM 2088]
 gi|311224418|gb|ADP77274.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanothermus fervidus
           DSM 2088]
          Length = 203

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 119/201 (59%), Gaps = 5/201 (2%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + W  +   D Y + A+ E + +R+AYKL+Q+N+K ++++    ++DLG++PG WSQVA 
Sbjct: 3   KRWWRQRKKDYYYRLAKKEKYYSRAAYKLIQLNKKFKLIRRGNVVLDLGAAPGGWSQVAI 62

Query: 87  RITGSNANNTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           ++ GS     +VVA+DI  M+P+      F + DF D    + I++   G  D+++SD +
Sbjct: 63  KLVGSKG---KVVAVDIKKMKPLKYENFSFIQGDFTDPKIQKKIKEITEGGVDVIISDAS 119

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G + +DH+R++ LC++    A  +L  GG+ +VK FQG    ++L  LK  F+ V 
Sbjct: 120 PSLSGIKDLDHIRSIELCKSVINIAKNVLKRGGNLVVKVFQGPEFKNLLDELKNEFKYVK 179

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +S   S E++++AK F
Sbjct: 180 ASKPPSSEKSSAEIYVVAKYF 200


>gi|302895811|ref|XP_003046786.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727713|gb|EEU41073.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 373

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 58/254 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  +  +  R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFDLFSNVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR---------------------------------------------VVAIDILD 105
                 R                                             +V+ID+  
Sbjct: 65  KGEKFGRAAWQDKEAKFRQQMLGILPKDDEAIITEQDGEKQEEALKPRDDVKIVSIDLQP 124

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIG-------------GNPDLVLSDMAYPTIGHRK 152
           + P+ G+   + D     +   +  A+                 DLVLSD A    G   
Sbjct: 125 ISPLAGITTLRADITHPATVPLLLSALDPSYDAKTAGNQASHPVDLVLSDGAPDVTGLHD 184

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SR
Sbjct: 185 LDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKIFFEKVIVAKPRSSR 244

Query: 213 AESVEMFLLAKGFR 226
           A SVE F++   F+
Sbjct: 245 ASSVEAFIVCINFQ 258


>gi|134107752|ref|XP_777487.1| hypothetical protein CNBB0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260179|gb|EAL22840.1| hypothetical protein CNBB0610 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 254

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 117/233 (50%), Gaps = 34/233 (14%)

Query: 28  DWLNRHINDPYVQRAQ-------LEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPG 79
            WL R   DPYV++            +R+RS++KL+ + + H IL +  + +VDLG++PG
Sbjct: 16  RWLTRQSRDPYVRQRTGTSSSPSQPSYRSRSSFKLVSLAKSHPILSRETKSVVDLGAAPG 75

Query: 80  SWSQVAARITGSNANNT---RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG--- 133
            WSQVAA + G +   T   RV AIDIL M+PI  V+  + DFL     E ++  +G   
Sbjct: 76  GWSQVAAHLLGVDKKPTSKPRVWAIDILPMDPIPAVQTLQGDFLSSSVRETLQSLVGTPE 135

Query: 134 --GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN----------------- 174
             G  D VLSDM  P  G R  D   ++ LC AAT FA  +L                  
Sbjct: 136 SGGGVDTVLSDMMAPMTGVRTRDVGLSLELCAAATVFARGVLKQASKEDEVKVVKGKKVW 195

Query: 175 IGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG+ ++K F     ++     L + F KV+  KP  SR+ES E + +  GF+
Sbjct: 196 PGGNLVMKFFAHPDLDEFRKLELDRWFGKVVVEKPKESRSESSEAYWVCLGFK 248


>gi|302672597|ref|XP_003025986.1| hypothetical protein SCHCODRAFT_62536 [Schizophyllum commune H4-8]
 gi|300099666|gb|EFI91083.1| hypothetical protein SCHCODRAFT_62536 [Schizophyllum commune H4-8]
          Length = 251

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 116/226 (51%), Gaps = 22/226 (9%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS--NRRIVDLGSSP 78
               SS+ W++R + DPYV+       R+RSA+KLL+I  +H  +     R +VDLG++P
Sbjct: 10  GSTPSSKAWVSRQLRDPYVK--HRLDLRSRSAFKLLEIEAQHNFIDKPHVRGVVDLGAAP 67

Query: 79  GSWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--- 132
           G WSQ+ +R  G          +VA+D+L M PI GV+  K DFL   + + +R  +   
Sbjct: 68  GGWSQIVSRKLGCTRKARGRGTIVAVDLLPMVPIPGVRTLKGDFLAPSTVQKVRTLLATS 127

Query: 133 ---GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI--------GGDFLV 181
              GG  D++LSDMA    G    D   ++ +CE+   FA   L          GG  L+
Sbjct: 128 ENPGGKADIILSDMAANASGTGVRDIQSSLDICESVYSFAARNLRSMQETGDSWGGVLLI 187

Query: 182 KTFQGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F      D     L+ +F+KV  VKP ASR++S E + L  GF+
Sbjct: 188 KYFAHPLLEDFSRENLQPNFRKVHLVKPPASRSDSRETYFLCMGFK 233


>gi|212704983|ref|ZP_03313111.1| hypothetical protein DESPIG_03051 [Desulfovibrio piger ATCC 29098]
 gi|212671647|gb|EEB32130.1| hypothetical protein DESPIG_03051 [Desulfovibrio piger ATCC 29098]
          Length = 220

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y  +A+ E + ARS YKL +++ K ++ +   R++DLG++PGSWS  AA   G 
Sbjct: 2   KEYRDHYFLKAKRENYPARSVYKLKELDAKFKLFRQGMRVLDLGAAPGSWSLGAAEKVGQ 61

Query: 92  NANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 V+  DI   E      V F + D  +       R    G  D+V+SDMA  T G
Sbjct: 62  RG---LVLGCDIQTTETAFPPQVTFMQEDVFNRSDAFEARLREMGPFDVVMSDMAPRTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A   L  GG F+VK F G    ++L  +++ F+ V   KP 
Sbjct: 119 TKFTDQARSLELACEALEVARLHLKPGGSFIVKIFMGPDIQEMLQPMRRAFKAVKSFKPK 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SRAES E F +  GF+
Sbjct: 179 SSRAESKETFFVGMGFK 195


>gi|258405869|ref|YP_003198611.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfohalobium
           retbaense DSM 5692]
 gi|257798096|gb|ACV69033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfohalobium
           retbaense DSM 5692]
          Length = 199

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 6/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ + + ARS YKL +++++ Q L   +RI+DLG++PGSW+  AA+ TG+
Sbjct: 2   KKYRDHYFKRAKQDNYPARSVYKLQELDKRFQFLAKGQRILDLGAAPGSWTLFAAKKTGA 61

Query: 92  NANNTRVVAIDIL--DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                RVVA+D+   D+E    V   + D L                D+VLSDMA  T G
Sbjct: 62  ---AGRVVAVDLQAIDIELPDHVTALQDDLLHPSPRFAEVMGSQAPFDVVLSDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLN-IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            +  D  R++ L E A   AL+ L   GG F+VK F+G      +  L+++F+KV   KP
Sbjct: 119 VKITDQARSLELAEMARDVALDTLKTPGGTFVVKIFEGPDVPQYVSDLRQYFKKVKTAKP 178

Query: 209 VASRAESVEMFLLAKGFR 226
            +SRAES E+F++  GF+
Sbjct: 179 KSSRAESKEIFVMGFGFK 196


>gi|281207786|gb|EFA81966.1| rRNA methyltransferase [Polysphondylium pallidum PN500]
          Length = 336

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 51/258 (19%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR 70
           R +   +K++S      +WL R ++DPYV++AQL+ + +R+A+KL ++++K ++L++   
Sbjct: 62  RSIASNLKDKS------EWLKRQLSDPYVKQAQLKSYVSRAAFKLEELDDKLKVLKAGSV 115

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDLG++PG W+QVA +  G++     V ++DI  D   +    F   DF   ++   I+
Sbjct: 116 VVDLGATPGGWTQVAQKRVGNSGI---VFSVDINEDGFELARANFIGGDFRSPETKLAIK 172

Query: 130 QAI-----------------------------------------GGNPDLVLSDMAYPTI 148
            A+                                          G  D+VLSDMA P  
Sbjct: 173 NALLKERSKRSKRSKSSSSSSKSGTTTTTIATATNDVDNNNIDVNGFVDVVLSDMAPPYC 232

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G   +DH R + L   A  FA+E L  GG F+ K  +GG+ N++L  +++HF     +KP
Sbjct: 233 GISNVDHERLIDLAGQALDFAVETLKSGGYFIAKVSRGGSENELLKRIQQHFTTYKSMKP 292

Query: 209 VASRAESVEMFLLAKGFR 226
            ASR ES E++ +   F+
Sbjct: 293 DASRQESSEIYYIGVKFK 310


>gi|42522939|ref|NP_968319.1| cell division protein FtsJ [Bdellovibrio bacteriovorus HD100]
 gi|81617714|sp|Q6MN40|RLME_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|39574135|emb|CAE79312.1| cell division protein FtsJ [Bdellovibrio bacteriovorus HD100]
          Length = 196

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 5/194 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ E + ARS +KL +I++K ++ +  + ++DLG+SPGSWSQ A+++ G    
Sbjct: 6   RDHYFRKAKQENFAARSVFKLEEIDQKFKMFKPGQVVLDLGASPGSWSQYASKMAGEKG- 64

Query: 95  NTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLSDMAYPTIGHRK 152
             RV+ +D+  +   +    F + D  DL+  +  ++       D+V+SDMA  T G R 
Sbjct: 65  --RVLGVDLSPVTVKLKNAVFIQADLRDLNLEDIFKEHGFVPPFDIVMSDMAPKTTGIRM 122

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R+M LCE A   A   L   G F+ K F       +   +KK F KV  VKP ++R
Sbjct: 123 TDQARSMELCELALDVARRFLKKDGHFVCKLFHSDDFGKLRDEMKKTFAKVEAVKPDSTR 182

Query: 213 AESVEMFLLAKGFR 226
             S E+FL+    +
Sbjct: 183 KISKEIFLVGLSKK 196


>gi|332701181|ref|ZP_08421269.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551330|gb|EGJ48374.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 208

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y ++A+ + + ARS YKL +IN++  IL+  ++++DLG++PGSW+  AA++ G 
Sbjct: 2   KKYQDHYFKQAKKDNYPARSVYKLQEINKRFGILRPGQKVLDLGAAPGSWTLFAAKVVGQ 61

Query: 92  NANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                +V+ +D+     +    V+F   D  +  +            D+V+SDMA  T G
Sbjct: 62  GG---KVLGVDLQSTSTDFPDNVRFLVGDVFEPPAEVQAAMEELAPFDVVVSDMAPKTSG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               D   +  LC  A   A + L  GG+F+ K F+G        +L++ F  V + KP 
Sbjct: 119 IIFRDQAFSFDLCVRALEVADKYLAKGGNFVAKIFEGPDVRQFAAMLRERFVTVKNFKPQ 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR+ES E F +  GF+
Sbjct: 179 SSRSESKETFYIGLGFK 195


>gi|255722854|ref|XP_002546361.1| hypothetical protein CTRG_05839 [Candida tropicalis MYA-3404]
 gi|240130878|gb|EER30440.1| hypothetical protein CTRG_05839 [Candida tropicalis MYA-3404]
          Length = 255

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 16/222 (7%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR-IVDLGS 76
           K      S ++++NR   D +V + +   +++R+A+KL +I++K  I ++  R IVDLG 
Sbjct: 17  KRFKSDKSLKNYVNRVQGDSFVSQRKTSLYKSRAAFKLEEIDDKLHIFKNGTRNIVDLGF 76

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG--- 133
           +PG+W+QVA     S      ++ +DI    P+ G  + + D     +   I +      
Sbjct: 77  APGAWTQVAVNRLESKNLPYNILGVDINPASPVRGCHYIQGDVTKKSTQTKILEFFKRCD 136

Query: 134 ------------GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
                        + DLV+SDM   T G    DH  ++ LC AA   A   L  G DF+V
Sbjct: 137 VLDKITFEEDEYKHIDLVMSDMMVNTTGSSVNDHYGSIYLCNAALHLAFHQLKPGKDFVV 196

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           K F G   +     LK  F +V  VKP AS+  S E++L+ +
Sbjct: 197 KIFNGSELDSFQARLKLMFAQVHAVKPRASKDVSSELYLVGR 238


>gi|303249142|ref|ZP_07335382.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           fructosovorans JJ]
 gi|302489467|gb|EFL49414.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           fructosovorans JJ]
          Length = 222

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 102/195 (52%), Gaps = 5/195 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y ++A+ + + ARS YKL +I ++  +L     ++DLG+ PGSW+  AA   G   
Sbjct: 4   YRDHYFKKAKQDNYPARSVYKLEEIEKQSHLLFPGAAVLDLGACPGSWTLFAASRVGEKG 63

Query: 94  NNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
              RV++ID+ +        V +   D LD         A  G  D+VLSDMA  T G +
Sbjct: 64  ---RVLSIDLNEAGTAFPGNVTYLTGDMLDPGPEILAAFARLGPFDVVLSDMAPKTTGVK 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D  R++ LCEAA   A   L  GG F+VK FQG         L+ +F KV   KP +S
Sbjct: 121 FADQARSLELCEAALSVAFTRLKPGGAFVVKIFQGPDAPAFQKGLRDYFDKVRVAKPKSS 180

Query: 212 RAESVEMFLLAKGFR 226
           RAES E+F +A GFR
Sbjct: 181 RAESKEIFYVATGFR 195


>gi|242280349|ref|YP_002992478.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio salexigens
           DSM 2638]
 gi|259494562|sp|C6C068|RLME_DESAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|242123243|gb|ACS80939.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio salexigens
           DSM 2638]
          Length = 199

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ E + ARS YKL +++++ ++    + ++DLG++PGSW+  AA+  G 
Sbjct: 2   KQYRDHYFKRAKKENYPARSVYKLQELDKRFKVFAKGQNVMDLGAAPGSWTLFAAKKVG- 60

Query: 92  NANNTRVVAIDIL--DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             +  RV+A+DI   D        F + D  +               DL++SDMA  T G
Sbjct: 61  --DTGRVLAVDIQSTDTAFPDNATFLQADVFEDSPELLAAMDKQLPYDLIISDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D   ++ LCE A       L  GG F+VK F G    + +  L+K F KV   KP 
Sbjct: 119 VKFADQANSLELCERARDIVPSRLKQGGHFIVKIFDGPDVKEYIDSLRKMFSKVKRFKPK 178

Query: 210 ASRAESVEMFLLAKGFR 226
           + R ES E F++  GFR
Sbjct: 179 SCREESKEFFIVGLGFR 195


>gi|212528768|ref|XP_002144541.1| cell division protein ftsj, putative [Penicillium marneffei ATCC
           18224]
 gi|210073939|gb|EEA28026.1| cell division protein ftsj, putative [Penicillium marneffei ATCC
           18224]
          Length = 846

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 122/276 (44%), Gaps = 73/276 (26%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W +R  +D + + A + G ++R+A+KLL+I+E+++I +S + +VDLG +PGS
Sbjct: 562 KRFSSSKRWQSRQRSDMFTREAVVRGLKSRAAFKLLEIDEQYRIFRSGQTVVDLGYAPGS 621

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD----SWEFIRQAIGGNP 136
           WSQVA   T  N    RV+ +DI+  +P  GV   + +FL  +      EF+R    G P
Sbjct: 622 WSQVAVTRTKPNG---RVLGVDIIPAQPPKGVSTIQGNFLSPNIQEYVLEFVRDPDRGRP 678

Query: 137 ---------------------------------------------DLVLSDMAYP----- 146
                                                        D+VLSDM+ P     
Sbjct: 679 RLPAPPVDEAEHLTADNDATILRESSAAGNDKGKEENGKQKERTVDVVLSDMSAPWAQVQ 738

Query: 147 ----------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                           T G    DH  +M LC AA  F+  +L  GG F+ K +QG    
Sbjct: 739 GFSNRSLSNPYRRMMNTSGIAFRDHAGSMDLCRAALQFSFNVLKAGGHFVCKFYQGPEDK 798

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                LK  F+KV  +KP +SR+ES E F +A   +
Sbjct: 799 LFEKQLKALFEKVHRLKPESSRSESREAFFVAMARK 834


>gi|33519574|ref|NP_878406.1| cell division protein 23S rRNA methyltransferase FtsJ [Candidatus
           Blochmannia floridanus]
 gi|81666687|sp|Q7VQM8|RLME_BLOFL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33517237|emb|CAD83620.1| cell division protein 23S rRNA methyltransferase FtsJ [Candidatus
           Blochmannia floridanus]
          Length = 206

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 4/197 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            ++  D Y  +AQ +  R+RS +KL  I+   ++L+    ++DLGS+PG WS    +   
Sbjct: 7   TKYFIDQYALQAQNQKLRSRSWFKLQSIDRLDKLLKQGMTVIDLGSTPGGWSSYVIKQI- 65

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
             +N   +V+ DIL M+ I GVKF + D  +++    I   I      +VLSDM+  T G
Sbjct: 66  --SNLGTIVSCDILPMKKIAGVKFLQGDCSNINFLNEIDLKIKHKRAQVVLSDMSPNTTG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              +D  +++ L + A       L  GG FLVK FQG   +  L  LK  F KV   KP 
Sbjct: 124 ISTVDVCKSIYLGKIALNMCCRFLAPGGSFLVKIFQGDGFDQYLYNLKCLFHKVKVRKPS 183

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR+ S E+++++K F+
Sbjct: 184 SSRSHSREVYIVSKDFK 200


>gi|268323180|emb|CBH36768.1| putative ribosomal RNA large subunit methyltransferase J
           [uncultured archaeon]
          Length = 204

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 8/195 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+  G+R+RSA+KLLQIN K  ++++   ++DLG++PG WSQVA  + G   ++
Sbjct: 10  DRFYKSAKELGYRSRSAFKLLQINTKFGLIRAGDVVLDLGAAPGGWSQVAYGLVG---DS 66

Query: 96  TRVVAIDILDMEPILGVKFFKFDF-LDLDSWEFIRQAIGGN----PDLVLSDMAYPTIGH 150
             V+++D+  ME I  +   K D   + ++   I+  +        D V+SD++    G 
Sbjct: 67  GLVLSVDLQPMENIADIVILKRDIAKEQETLAAIKAVLNRKGHELVDAVISDLSPQLSGT 126

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R  D  R+  L  +A   A  +L   G+F+ K FQG   N+    +K  F+      P A
Sbjct: 127 RDYDQFRSSELSTSALNIASALLRNNGNFVAKIFQGAYYNEFYKCVKAKFRYTRAHSPAA 186

Query: 211 SRAESVEMFLLAKGF 225
           SR  S EM+++ KG+
Sbjct: 187 SRKGSAEMYVIGKGY 201


>gi|323698443|ref|ZP_08110355.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp. ND132]
 gi|323458375|gb|EGB14240.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
           desulfuricans ND132]
          Length = 199

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y +RA+ E + ARS YKL +++++ QI +  + ++DLG++PGSWSQ A    G 
Sbjct: 2   KQYQDKYFKRAKKENYAARSVYKLKEMDKRFQIFKKGQTVLDLGAAPGSWSQFAGERVGP 61

Query: 92  NANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             +   V+ +D+   +      + F + D                  D+++SDMA  T G
Sbjct: 62  EGH---VLGVDLQTTKHSFAGNITFLQADVFSDSPELLAAVEPLAPFDVIISDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D   ++ LCE A   AL+ L  GG F VK F+GG  ND    ++ +F ++ + KP 
Sbjct: 119 IKFADQANSLELCERAFEVALKYLKKGGSFAVKIFEGGEINDYRDAIRPYFARIKNFKPY 178

Query: 210 ASRAESVEMFLLAKGFR 226
           +SR+ES E+F++A GF+
Sbjct: 179 SSRSESKEIFIVALGFK 195


>gi|310800597|gb|EFQ35490.1| FtsJ-like methyltransferase [Glomerella graminicola M1.001]
          Length = 410

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 65/261 (24%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  +  +  R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFDLFANVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR---------------------------------------------------VV 99
                 R                                                   +V
Sbjct: 65  KGEKFGRSAWQDREAKFRQEMLGVFPAAPSEAGASAADKSDAEAAAGEEEIHPRKDVKIV 124

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG--------------GNPDLVLSDMAY 145
           +ID+  + P+ G+   + D     +   + +A+                  DLV+SD A 
Sbjct: 125 SIDLQPISPLPGIVTLRADITHPATVPLLLKALDPDYDANLTAKQQATDRVDLVISDGAP 184

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+ V+ 
Sbjct: 185 DVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKIFFETVVV 244

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SRA SVE F++   F+
Sbjct: 245 AKPRSSRASSVEAFIVCINFQ 265


>gi|319760242|ref|YP_004124180.1| ribosomal RNA large subunit methyltransferase, ftsJ-like protein
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038956|gb|ADV33506.1| ribosomal RNA large subunit methyltransferase, ftsJ-like protein
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 217

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 4/209 (1%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N+ C   +  W  ++  D Y   A++   R+RS +KL  I++   + +    ++DLGS+P
Sbjct: 3   NKKCFTRTFKWSKKYYIDKYSNEAKVRKLRSRSWFKLQFIDQIDVLFKKGTTVIDLGSAP 62

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PD 137
           G WS  AA    +      ++A DIL M+ I GV F + +  DL     I          
Sbjct: 63  GGWSIYAANKINNTGY---IMACDILPMKTIYGVDFVQGNCADLKVINKICCWAKDKKVQ 119

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           ++LSDM+  T G   ID   ++ L   A      +L   G F+VK FQG      L  +K
Sbjct: 120 VILSDMSPKTTGISVIDVYNSIHLGNIALNICKYVLVFEGSFVVKIFQGKGFEQYLHNVK 179

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F  V   KP +SR  S E++++AK F+
Sbjct: 180 SLFFDVKIRKPSSSRCNSREVYIVAKKFK 208


>gi|322487855|emb|CBZ23099.1| putative FtsJ-like methyltransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 454

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 107/248 (43%), Gaps = 52/248 (20%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAAR 87
           ++   D Y +RA+ EG+RARSAYKLLQINE+  IL         VDL ++PGSWSQV A+
Sbjct: 5   SKDKRDIYYRRAKEEGYRARSAYKLLQINEEFNILSPAEIRTGAVDLCAAPGSWSQVLAQ 64

Query: 88  ITGSNA---------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
                                   RVVA+D+ +M PI GV   + D     +   I + +
Sbjct: 65  HFKMIGANAAAAAAEGDSLLAQTPRVVAVDLQEMAPIDGVTLLQGDITSEVTAREIIRLL 124

Query: 133 GG----------------------------------NPDLVLSDMAYPTIGHRKIDHLRT 158
                                                 D+VL D A    G  ++D    
Sbjct: 125 NAPTSTGVTRTDDEPQPASSYFSSSAPSPALGASLRKADIVLCDGAPDVTGMHELDEYLQ 184

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
             L  AA      +L  GG FL K F+G  T  ++   +  FQ+V  VKP +SR  S+E 
Sbjct: 185 HHLLLAALHITTFVLRAGGCFLTKMFRGPNTAFLVAKSELFFQQVRVVKPKSSRNASMES 244

Query: 219 FLLAKGFR 226
           FLL +GFR
Sbjct: 245 FLLCQGFR 252


>gi|325114439|emb|CBZ49995.1| putative ribosomal RNA large subunit methyltransferase J [Neospora
           caninum Liverpool]
          Length = 467

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 19/220 (8%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
                    +++N++ + +S +W+ R I D YV RAQ    R+R+A+KL Q++++    +
Sbjct: 243 GRRSYSGEPRIRNKNSRHTS-EWIKRQITDRYVLRAQERNLRSRAAFKLEQLDDEFLFFR 301

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            N+ +VDLG+ PG WSQVA     +     RVVA+D + M+P+    F +       + +
Sbjct: 302 KNQVVVDLGAYPGGWSQVALDRIRAGGGEGRVVAVDPVAMDPLPHHTFIQGSVGQAGTLQ 361

Query: 127 FIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            + + +G    D+VLSDMA   IG ++ DHL    LC  A+                   
Sbjct: 362 ALLEGLGESKADVVLSDMAPACIGVKQDDHLNCAELCLHASDL----------------- 404

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              TN+    L+  F++V   KP A R ES EM+ + + F
Sbjct: 405 MEQTNNFKIYLRTRFKRVSSAKPRACRPESREMYFVCQHF 444


>gi|68074303|ref|XP_679066.1| methyltransferase [Plasmodium berghei strain ANKA]
 gi|56499717|emb|CAH95392.1| methyltransferase, putative [Plasmodium berghei]
          Length = 978

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI  K+ I ++   ++DL ++PG W QVA +    N+  
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIARKYNIFKNANILIDLCAAPGGWLQVAYKNMNKNST- 71

Query: 96  TRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKI 153
             ++ +D++ +  I   V   K D    +  + I+  I     D++L+D A         
Sbjct: 72  --IIGVDLVPIRKIDNNVITIKSDITSAECIKKIKDIIQYEKADVILNDGAPNVGTTYSY 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  ++   A + L  GG F+ K F+      ++ +L+K F +V H+KP +SR 
Sbjct: 130 DSFNQNILVLSSIKLAYKFLTKGGIFITKVFRNEEYVSLIWVLEKLFGEVKHIKPRSSRE 189

Query: 214 ESVEMFLLAKGF 225
            S E++L+   F
Sbjct: 190 ISSEIYLIGLNF 201


>gi|238501666|ref|XP_002382067.1| tRNA methyltransferase, putative [Aspergillus flavus NRRL3357]
 gi|83766939|dbj|BAE57079.1| unnamed protein product [Aspergillus oryzae]
 gi|220692304|gb|EED48651.1| tRNA methyltransferase, putative [Aspergillus flavus NRRL3357]
          Length = 427

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 64/259 (24%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  + +        R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFEHENPEKVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTR------------------------------------------VVAIDI 103
           +R+     +  R                                          +V+ID+
Sbjct: 65  SRVLIKGESFGRRAWVEKKGKEAAALANANGDATDNNVDGDAAMEELKPRKNVKIVSIDL 124

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-----------------DLVLSDMAYP 146
             M P+ G+   K D     +   + +A+                     DLV+SD A  
Sbjct: 125 QPMAPLEGITTLKADITHPSTIPLLLRALDPEAYDSTTSSPSSLRQPHPVDLVISDGAPD 184

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  AA   AL +L  GG F+ K F+G   + I   L+  F+KV   
Sbjct: 185 VTGLHDLDIYIQSQLLYAALNLALGVLRPGGKFVAKIFRGRDVDLIYAQLRTVFEKVSVA 244

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SRA S+E F++ +GF
Sbjct: 245 KPRSSRASSLEAFVVCEGF 263


>gi|46134619|ref|XP_389476.1| hypothetical protein FG09300.1 [Gibberella zeae PH-1]
          Length = 373

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 108/255 (42%), Gaps = 59/255 (23%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFDLFADVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR----------------------------------------------VVAIDIL 104
                 R                                              +V+ID+ 
Sbjct: 65  KGEKFGRAAWQDKEAKFRQQMLGILPKDGDDEQQTTEIQQNEEEPAKPREDVKIVSIDLQ 124

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIG-------------GNPDLVLSDMAYPTIGHR 151
            + P+ G+   + D     +   +  A+                 DLVLSD A    G  
Sbjct: 125 PISPLAGITTLRADITHPATVPLLLSALDSSYDPKAAGTQASHPVDLVLSDGAPDVTGLH 184

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +S
Sbjct: 185 DLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDVLYAQLKIFFEKVIVAKPRSS 244

Query: 212 RAESVEMFLLAKGFR 226
           RA SVE F++   F+
Sbjct: 245 RASSVEAFIVCINFQ 259


>gi|224103395|ref|XP_002313039.1| predicted protein [Populus trichocarpa]
 gi|222849447|gb|EEE86994.1| predicted protein [Populus trichocarpa]
          Length = 840

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D + + A+  G+R+R+++KL+Q++ K + LQS+R ++DL ++PG W QVA +    
Sbjct: 7   KHRLDKFYKLAKEHGYRSRASWKLIQLDTKFKFLQSSRAVLDLCAAPGGWMQVAVQRV-- 64

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
               + V+ ID++ + P+ G    + D    +    I++ +G +     DLVL D +   
Sbjct: 65  -PVRSLVLGIDLVKIAPLRGAVSIEQDITKPECRAKIKKIMGEHGVRAFDLVLHDGSPNI 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   SL   +   A + L   G F+ K F+    + ++  L + F+KV   K
Sbjct: 124 GGAWSQEAMAQNSLVIDSVRLATQFLAPKGTFVTKVFRSQDYSSVIYCLNQLFEKVEVDK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E+F+L   ++
Sbjct: 184 PAASRSASAEIFVLGLRYK 202


>gi|320593423|gb|EFX05832.1| trm7-like tRNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 385

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 108/262 (41%), Gaps = 67/262 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFDLFSGVTRVVDLCAAPGSWSQVLSRVLI 64

Query: 91  SNANNTR----------------------------------------------VVAIDIL 104
                 R                                              +V+ID+ 
Sbjct: 65  KGEKFGRAAWQDREAELRQQMLGVLRMDGGKEREDSRAASTTSLPSTIRSDVKIVSIDLQ 124

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGN---------------------PDLVLSDM 143
            + P+ G+   + D     +   + QA+                         DLVLSD 
Sbjct: 125 PISPLPGIVTLRADITHPATVPLLLQALDPERQQPDSEDTSDSTAAIVADNPVDLVLSDG 184

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F++V
Sbjct: 185 APDVTGLHDLDMYVQSQLLFAALNLALCVLRPGGKFVAKIFRGRNVDLLFAQLKLFFRRV 244

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
           +  KP +SRA SVE F++   F
Sbjct: 245 VVAKPRSSRASSVEAFIVCLDF 266


>gi|27904834|ref|NP_777960.1| ribosomal RNA large subunit methyltransferase J [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605259|sp|Q89AF1|RLME_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|27904232|gb|AAO27065.1| ribosomal RNA large subunit methyltransferase J [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 210

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

Query: 29  WLNRHINDPYVQRAQLEG--WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           WLN H  D YV++        R+R+ +KL  I   +  L+    +VDLGSSPGSWS  A 
Sbjct: 12  WLNEHFKDKYVKQVHKNKSDIRSRAWFKLDDIQSSNNFLKVGMTVVDLGSSPGSWSGYAV 71

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAY 145
           +  G      RV+A D+  M PI  V FF+ +  +   + FI   +      +++SDMA 
Sbjct: 72  KRVGKKG---RVIACDMRPMLPIKDVVFFQGNIKNKCFFNFIETYLCHKKVHVIISDMAP 128

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              GH  IDH++ + L + A   ++++L+ GG  LVK+F G   N  +  +   F KV  
Sbjct: 129 NMTGHYFIDHIQAILLSKLALKMSIKVLSKGGSLLVKSFYGQEFNSFIQDVHVTFSKVKI 188

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SRA S E+++LA G +
Sbjct: 189 CKPNSSRARSREVYILASGRK 209


>gi|256831249|ref|YP_003159977.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580425|gb|ACU91561.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfomicrobium
           baculatum DSM 4028]
          Length = 204

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D Y ++A+ + + ARS YKL ++++ H++L+  ++++DLG+ PGSW+  AA   G+
Sbjct: 2   KQYRDYYFKKAKQDNYPARSVYKLQEMDKAHKLLRQGQKVLDLGACPGSWTLYAAERVGA 61

Query: 92  NANNTRVVAIDIL--DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                RV+ ID+   D      V F + D                  D+V+SDMA  T G
Sbjct: 62  EG---RVLGIDLNMPDTRFPEQVTFLQEDIFARTPLFLGHLQALAPFDVVMSDMAPKTTG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L EAA   A E L  GG F+ K F+G      +  LK  F KV   KP 
Sbjct: 119 SKFTDQARSIQLVEAAFGVAEEWLASGGTFIAKVFEGPDVQPFVQSLKVRFAKVGMFKPK 178

Query: 210 ASRAESVEMFLLAKGF 225
           +SRAES E+F+L  GF
Sbjct: 179 SSRAESKEIFILGLGF 194


>gi|94986714|ref|YP_594647.1| 23S rRNA methylase [Lawsonia intracellularis PHE/MN1-00]
 gi|143460425|sp|Q1MRQ0|RLME_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|94730963|emb|CAJ54326.1| 23S rRNA methylase [Lawsonia intracellularis PHE/MN1-00]
          Length = 200

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+ E + ARS YKL +I+ +  + Q    ++DLG+SPGSWS  AA   G   
Sbjct: 4   YRDYYFLKAKHEKYPARSIYKLKEIDNRFCLFQKGMSVLDLGASPGSWSLGAAEKVGKTG 63

Query: 94  NNTRVVAIDILDME-PIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
              RVV+ DI  +  P+   V FF+ D               G   +++SDMA  T G +
Sbjct: 64  ---RVVSCDIQTITIPLPSNVSFFQEDIFHRSDSFNNILIKEGPFHVIMSDMAPQTTGVK 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             DH R++ LC  A   A   L   G F+VK F G  T +++  +++HF++V   KP +S
Sbjct: 121 ITDHSRSLELCLEALAIAKCYLLQQGSFIVKIFMGADTIELVKEMRQHFERVTSFKPCSS 180

Query: 212 RAESVEMFLLAKGFRK 227
           R +S E+F +  GF++
Sbjct: 181 RTKSKEIFYVGLGFKR 196


>gi|303313694|ref|XP_003066856.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106523|gb|EER24711.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 300

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 109/264 (41%), Gaps = 57/264 (21%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W  R   D Y + A L G ++R+A+KLLQIN  ++I +  + +VDLG +PGS
Sbjct: 28  RRFASSKQWQARQFKDIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGS 87

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKF------FKFDFLD------------- 121
           WSQVA  +T  N     +  I     + +  ++        +    +             
Sbjct: 88  WSQVAVDLTHPNGRVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFLRNPDRGRPLRE 147

Query: 122 ---------------------------LDSWEFIR-----------QAIGGNPDLVLSDM 143
                                       D  E I            +A  G  D+VLSDM
Sbjct: 148 ELCSRTPQKTWTANEVETFEPGYIDRERDVSERISREPCDEHSPQTEAGEGTVDVVLSDM 207

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH R+M LC AA  F+ ++L  GG F+ K +QG     +   LK  FQKV
Sbjct: 208 MMNTSGLGFRDHARSMDLCNAAVNFSYDVLKPGGHFICKFYQGNEDQQLELRLKSLFQKV 267

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP +SR ES E + +    ++
Sbjct: 268 HREKPDSSRKESREAYFIGLKRKR 291


>gi|225619180|ref|YP_002720406.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
           hyodysenteriae WA1]
 gi|259494561|sp|C0QX75|RLME_BRAHW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|225213999|gb|ACN82733.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
           hyodysenteriae WA1]
          Length = 193

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y ++A+ E ++ARS +KL +   K + ++++  ++D+G SPGS+SQ    +   
Sbjct: 2   KKVQDFYFKKAKEENYKARSVFKLEEAQNKFKFIKASDNVLDVGCSPGSFSQY---MLNK 58

Query: 92  NANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
              +  VV +DIL          F   D  D+D   F         D+V+SD    T   
Sbjct: 59  ILKSGSVVGVDILPNSFAHQRFTFILGDIKDMDVTTFNNTLF----DVVVSDAMPNTTSD 114

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R+ +H R++SLC +    A E+L   G+F +K F G    D    L ++F  V   KP +
Sbjct: 115 RETNHFRSISLCRSIFDLAKEVLKENGNFFIKVFDGKDLQDFKKELSEYFNSVNVFKPKS 174

Query: 211 SRAESVEMFLLAKGFRK 227
           SR ES E+FL  K F+K
Sbjct: 175 SRDESREIFLFCKNFKK 191


>gi|116515168|ref|YP_802797.1| hypothetical protein BCc_236 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285436|sp|Q057J5|RLME_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|116257022|gb|ABJ90704.1| ribosomal methytransferase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 209

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 4/209 (1%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS++WL R+ NDPY++    +  R+RS +KL +I+E  +I +    ++DLGS+PG
Sbjct: 4   KKRSKSSKNWLKRNFNDPYIKERNKKKLRSRSWFKLKEIDESEKIFKKGMNVIDLGSNPG 63

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DL 138
            WS+   +  G +    ++ A DIL M  +  + FF  D  + D  + I   +     ++
Sbjct: 64  GWSEYTLKKIGKSG---KIFACDILPMRFLKDIVFFCGDISNSDFLKKIFLFLDKYSWNV 120

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SD++    G+  ID+     L       +  +L+  G  ++K FQG   N  +  ++ 
Sbjct: 121 VMSDISPNICGYSVIDNSNMFKLSNIVLKISRHVLSNNGYLIIKLFQGYGFNKYMKKIRN 180

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP ASR  S E+F++A G +K
Sbjct: 181 IFELVKIYKPNASRVNSREVFIIAYGCKK 209


>gi|71746024|ref|XP_822237.1| FtsJ-like methyltransferase [Leishmania major strain Friedlin]
 gi|321438176|emb|CBZ11928.1| putative FtsJ-like methyltransferase [Leishmania major strain
           Friedlin]
          Length = 459

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 108/250 (43%), Gaps = 54/250 (21%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAAR 87
           ++   D Y ++A+ EG+RARSAYKLLQI+E+  IL         VDL ++PGSWSQV A+
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQIHEEFNILDPAEIRTGAVDLCAAPGSWSQVLAQ 64

Query: 88  ITGS--------------NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
                              A   RVVA+D+ +M PI GV   + D     +   I + + 
Sbjct: 65  HFKMISANLTAASEGDSLPAQTPRVVAVDLQEMAPIDGVTLLQGDITSEVTAREIIRLLN 124

Query: 134 G-------------------------------------NPDLVLSDMAYPTIGHRKIDHL 156
                                                   D+VL D A    G  ++D  
Sbjct: 125 APTSTGVVRTDDEQQQPQPASSSFSSSAPSPALGASPRKADIVLCDGAPDVTGMHELDEY 184

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
               L  AA      +L  GG FL K F+G  T  ++   +  FQ+V  VKP +SR  S+
Sbjct: 185 LQHHLLLAALHITTFVLRAGGCFLTKIFRGPNTAFLVAKSQLFFQQVRVVKPKSSRNASM 244

Query: 217 EMFLLAKGFR 226
           E FLL +GFR
Sbjct: 245 ESFLLCQGFR 254


>gi|146075540|ref|XP_001462727.1| FtsJ-like methyltransferase [Leishmania infantum JPCM5]
 gi|134066806|emb|CAM65266.1| putative FtsJ-like methyltransferase [Leishmania infantum JPCM5]
 gi|322496134|emb|CBZ31205.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 457

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 106/248 (42%), Gaps = 52/248 (20%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAAR 87
           ++   D Y ++A+ EG+RARSAYKLLQI+E+  IL         VDL ++PGSWSQV A+
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQIHEEFNILDPAEIRTGAVDLCAAPGSWSQVLAQ 64

Query: 88  ITGSNA--------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
                                  RVVA+D+ +M PI GV   + D     +   I + + 
Sbjct: 65  HFKMIGANLTAAAEGDSLPAQTPRVVAVDLQEMAPIDGVTLLQGDITSEVTAREIIRLLN 124

Query: 134 G-----------------------------------NPDLVLSDMAYPTIGHRKIDHLRT 158
                                                 D+VL D A    G  ++D    
Sbjct: 125 APTPTGVALTDDEQQQPANSSFSSPAPSPALGASPRKADIVLCDGAPDVTGMHELDEYLQ 184

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
             L  AA      +L  GG FL K F+G  T  ++      FQ+V  VKP +SR  S+E 
Sbjct: 185 HHLLLAALHITTFVLRAGGCFLTKMFRGPNTAFLVAKSGLFFQQVRVVKPKSSRNASMES 244

Query: 219 FLLAKGFR 226
           FLL +GFR
Sbjct: 245 FLLCQGFR 252


>gi|255543715|ref|XP_002512920.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
 gi|223547931|gb|EEF49423.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
          Length = 828

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D + + A+  G+R+R+++KL+Q++ K Q L S+R ++DL ++PG W QVA +    
Sbjct: 7   KHRLDKFYRLAKEHGYRSRASWKLVQLDSKFQFLHSSRAVLDLCAAPGGWMQVAVQRVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
               + V+ ID++ + PI G    + D    +    +++ +G +     DLVL D +   
Sbjct: 67  G---SLVLGIDLVKIAPIRGATSIEQDITKPECKARVKKIMGEHGVKAFDLVLHDGSPNI 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   A   A + L   G F+ K F+    N ++  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDAVRLATQFLAPKGTFVTKVFRSQDYNSVIYCLNQLFEKVEVDK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E+F+L   ++
Sbjct: 184 PAASRSASAEIFVLGLKYK 202


>gi|170591144|ref|XP_001900330.1| protein R74.7 [Brugia malayi]
 gi|158591942|gb|EDP30544.1| protein R74.7, putative [Brugia malayi]
          Length = 207

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y + A+ EGWRARSA+KL+QI+++  I +   R+VDL ++PGSWSQV ++   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLMQIDDEFNIFEGVHRVVDLCAAPGSWSQVLSKKVY 64

Query: 89  ---TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMA 144
                      R+VA+D+  M P+ G+   + D  +  + + I   + G   DLV+ D A
Sbjct: 65  FAQDEKERKAVRIVAVDLQPMSPLPGIIQLQGDITEACTAKKIISYLEGSKADLVICDGA 124

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   +D      L  A    A  +L   G F+ K F+      +   LK   ++V 
Sbjct: 125 PDVTGLHALDEYMQSQLVLAPLNIATFVLKEAGTFVAK-FRTRDITLLYAQLKIFSKEVY 183

Query: 205 HVKP 208
             KP
Sbjct: 184 CTKP 187


>gi|118575756|ref|YP_875499.1| 23S rRNA methylase [Cenarchaeum symbiosum A]
 gi|158512513|sp|A0RV28|RLME_CENSY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|118194277|gb|ABK77195.1| 23S rRNA methylase [Cenarchaeum symbiosum A]
          Length = 196

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y + A+ +G+R+R+AYKL ++N+ ++I+ +   ++DLG +PGSW QVAA   G+   
Sbjct: 8   KDHYRKMAREQGYRSRAAYKLKELNKAYRIIGAGFTVLDLGCAPGSWMQVAASAAGNRGT 67

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              V+ +D+   E +   +  + D  D    E + + +G   D V+ D++    G+  +D
Sbjct: 68  ---VLGVDLEYAEELNHAESMRGDVEDESLAETVAERLG-RADAVICDLSPQVSGNWSVD 123

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
           H R +SL  AA      +L   G+ + K F G    +    +   F K    KP ASR +
Sbjct: 124 HARQISLNYAAARIMGRVLAPKGNAVFKVFDGEYAAEFREHMGHMFSKTKSTKPQASRKQ 183

Query: 215 SVEMFLLAKGFR 226
           S E++L+  GFR
Sbjct: 184 SSELYLVCLGFR 195


>gi|70944493|ref|XP_742172.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521000|emb|CAH79645.1| hypothetical protein PC000405.03.0 [Plasmodium chabaudi chabaudi]
          Length = 284

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I ++   ++DL ++PG W QVA +   + + +
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAKKYNIFKNANILIDLCAAPGGWLQVAYK---NMSKS 69

Query: 96  TRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKI 153
           + ++ +D++ +  I   V   K D   ++    I+  I     D++L+D A         
Sbjct: 70  STIIGVDLMPIRKIDNNVITIKSDITSVECIRKIKDIIKYEKADVILNDGAPNVGTTYSY 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L  ++   A + L  GG F+ K F+      ++ +L+K F +V H+KP +SR 
Sbjct: 130 DSFNQNILVLSSIKLAYKFLTRGGIFITKVFRNEEYVSLIWVLEKLFTEVKHIKPRSSRE 189

Query: 214 ESVEMFLLAKGF 225
            S E++L+   F
Sbjct: 190 ISSEIYLIGLNF 201


>gi|293393160|ref|ZP_06637475.1| ribosomal RNA large subunit methyltransferase J [Serratia odorifera
           DSM 4582]
 gi|291424306|gb|EFE97520.1| ribosomal RNA large subunit methyltransferase J [Serratia odorifera
           DSM 4582]
          Length = 157

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
             +VDLG++PG WSQ      G      R++A DIL M+PI+GV F + DF D    + +
Sbjct: 1   MTVVDLGAAPGGWSQYVVTQIGGTG---RIIACDILPMDPIVGVDFLQGDFRDELVLKAL 57

Query: 129 RQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
              +G     +V+SDMA    G   +D  R+M L E A     ++L  GG FLVK FQG 
Sbjct: 58  LDRVGESKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFLVKVFQGD 117

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++ L  ++  F KV   KP ASRA S E++++A G +
Sbjct: 118 GFDEYLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 156


>gi|322504161|emb|CAM41440.2| putative FtsJ-like methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 457

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 107/252 (42%), Gaps = 56/252 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAAR 87
           ++   D Y ++A+ EG+RARSAYKLLQI E+  IL         VDL ++PGSWSQV A+
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQIEEEFHILDPAEIRTGAVDLCAAPGSWSQVLAQ 64

Query: 88  ITG---------------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
                               A   RVVA+D+ +M PI GV   + D     +   I + +
Sbjct: 65  CFKTIGANATAAAVAGAALPAQTPRVVAVDLQEMAPIDGVAILQGDITSEVTANEIIRLL 124

Query: 133 GG--------------------------------------NPDLVLSDMAYPTIGHRKID 154
                                                     D+VL D A    G  ++D
Sbjct: 125 NAPNSTGGPCTDDEQQQQPTSSNPSSSSSSHPPVLCASQRKADIVLCDGAPDVTGMHELD 184

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG FL K F+G  T  ++   +  F++V  VKP +SR  
Sbjct: 185 EYLQHHLLLAALHITTFVLRAGGCFLTKMFRGPNTAFLIAKSEIFFEQVRVVKPKSSRNA 244

Query: 215 SVEMFLLAKGFR 226
           S+E FLL +GFR
Sbjct: 245 SMESFLLCQGFR 256


>gi|195146443|ref|XP_002014194.1| GL24549 [Drosophila persimilis]
 gi|194103137|gb|EDW25180.1| GL24549 [Drosophila persimilis]
          Length = 304

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLL I++ + IL   RR VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKEEGWRARSAFKLLHIHDAYGILNGVRRAVDLCAAPGSWSQVLSRKLY 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVL 140
                 +  + T+++A+D+  M PI GV   + D     + E I             LV+
Sbjct: 65  DTCQNDAEKSATKIIAVDLQAMAPIRGVLQLQGDITKESTAEAIISHFSADGEEKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  +A   A  +L  GG F+ K FQG  T  +   +K  F
Sbjct: 125 CDGAPDVTGVHEMDEYMQHQLLVSALSIATVVLESGGSFVAKIFQGNATGLLSTQMKIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            K    KP +SR+ S+E F++   F
Sbjct: 185 NKFDIYKPPSSRSSSIESFVVCSDF 209


>gi|154331472|ref|XP_001561554.1| FtsJ-like methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 457

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 107/252 (42%), Gaps = 56/252 (22%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAAR 87
           ++   D Y ++A+ EG+RARSAYKLLQI E+  IL         VDL ++PGSWSQV A+
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQIEEEFHILDPAEIRTGAVDLCAAPGSWSQVLAQ 64

Query: 88  ITG---------------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
                               A   RVVA+D+ +M PI GV   + D     +   I + +
Sbjct: 65  CFKTIGANATAAAVAGAALPAQTPRVVAVDLQEMAPIDGVAILQGDITSEVTANEIIRLL 124

Query: 133 GG--------------------------------------NPDLVLSDMAYPTIGHRKID 154
                                                     D+VL D A    G  ++D
Sbjct: 125 NAPNSTGGPCTDDEQQQQPTSSNPSSSSSSHPPVLCASQRKADIVLCDGAPDVTGMHELD 184

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
                 L  AA      +L  GG FL K F+G  T  ++   +  F++V  VKP +SR  
Sbjct: 185 EYLQHHLLLAALHITTFVLRAGGCFLTKMFRGPNTAFLIAKSEIFFEQVRVVKPKSSRNA 244

Query: 215 SVEMFLLAKGFR 226
           S+E FLL +GFR
Sbjct: 245 SMESFLLCQGFR 256


>gi|315427580|dbj|BAJ49179.1| ribosomal RNA large subunit methyltransferase E FtsJ [Candidatus
           Caldiarchaeum subterraneum]
          Length = 224

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 5/201 (2%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            WL R   DPY ++A+  G+ +R+A+KLL+I  + +I++  +R++DLG++PG  + VA+ 
Sbjct: 5   QWLQRRREDPYWRKAKEMGYPSRAAFKLLEIQSRWKIIREGQRVLDLGAAPGGMAAVASD 64

Query: 88  ITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAY 145
           I G       VVA+D   ++     +   + D  +      ++ A+G     +V+SD++ 
Sbjct: 65  IVGEKG---LVVAVDREPLQLTRPNIVTIQADIYEARLTRDVQTALGEEFCDVVVSDLSP 121

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +   + + L EA+       L  GG+ + K F+     D    + + F KV  
Sbjct: 122 HHSGDYDLLVEQQIDLLEASLNLCHRFLRRGGNAVFKAFEHPRLRDFEKRMMRCFWKVER 181

Query: 206 VKPVASRAESVEMFLLAKGFR 226
             P +++  S E+FLL  G+R
Sbjct: 182 YVPRSTKKGSSEIFLLGLGYR 202


>gi|315425613|dbj|BAJ47272.1| ribosomal RNA large subunit methyltransferase E FtsJ [Candidatus
           Caldiarchaeum subterraneum]
          Length = 224

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 5/201 (2%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            WL R   DPY ++A+  G+ +R+A+KLL+I  + +I++  +R++DLG++PG  + VA+ 
Sbjct: 5   QWLQRRREDPYWRKAKEMGYPSRAAFKLLEIQSRWKIIREGQRVLDLGAAPGGMAAVASD 64

Query: 88  ITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAY 145
           I G       VVA+D   ++     +   + D  +      ++ A+G     +V+SD++ 
Sbjct: 65  IVGEKG---LVVAVDRQPLQLTRPNIVTIQADIYEARLTRDVQTALGEEFCDVVVSDLSP 121

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +   + + L EA+       L  GG+ + K F+     D    + + F KV  
Sbjct: 122 HHSGDYDLLVEQQIDLLEASLNLCHRFLRRGGNAVFKAFEHPRLRDFEKRMMRCFWKVER 181

Query: 206 VKPVASRAESVEMFLLAKGFR 226
             P +++  S E+FLL  G+R
Sbjct: 182 YVPRSTKKGSSEIFLLGLGYR 202


>gi|225428430|ref|XP_002280414.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 842

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 7/199 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D +   A+  G+R+R+A+KL+Q++ K+  L+S+R ++DL ++PG W Q A      
Sbjct: 7   KHRLDKFYHLAKEHGYRSRAAWKLVQLDSKYNFLRSSRAVLDLCAAPGGWMQAAVERVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            +    ++ +D+  + P+ G    + D         +++ +        D+VL D +   
Sbjct: 67  GSF---ILGVDLNPIAPVRGAISIEEDITKPACKARVKKLMSEYGCAAFDIVLHDGSPNI 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    +     +L   A   A + L   G F+ K F+    N +L  LK+ F+KV   K
Sbjct: 124 GGAWTQEATAQNALVIDALRLATQFLAPKGAFVTKVFRSQDYNSVLYCLKQLFEKVEVDK 183

Query: 208 PVASRAESVEMFLLAKGFR 226
           P ASR+ S E+F+L   ++
Sbjct: 184 PAASRSTSAEIFVLGLKYK 202


>gi|291288275|ref|YP_003505091.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885435|gb|ADD69135.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 197

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 111/195 (56%), Gaps = 8/195 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + ++A+LEG+++R+AYKL+++N+KH + +S   ++D+G +PG W QV  +      
Sbjct: 4   RKDAFYKKAKLEGFKSRAAYKLIELNKKHALFRSGDAVLDVGCAPGGWIQVVLQQKKCT- 62

Query: 94  NNTRVVAIDILDMEPILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               VV +D+L++  +      F + D  + ++ + +  A  G  D V+SD A  T G +
Sbjct: 63  ----VVGVDLLEVLNLTDTRFTFIQGDITEQETVDKVLDACDG-YDCVISDAAPNTSGSK 117

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +DH+ ++ L     +FA  +L  GG+F  K F+G   + ++  +KK F     ++P A+
Sbjct: 118 LLDHVNSVDLVRLIFYFAKTVLKKGGNFACKVFEGEDRDALVKEIKKDFDFCKMLRPEAT 177

Query: 212 RAESVEMFLLAKGFR 226
           R  S EM+++ KGF+
Sbjct: 178 RKNSFEMYIVFKGFK 192


>gi|198453132|ref|XP_001359081.2| GA18746 [Drosophila pseudoobscura pseudoobscura]
 gi|198132224|gb|EAL28224.2| GA18746 [Drosophila pseudoobscura pseudoobscura]
          Length = 304

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLL I++ + IL   RR VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRQAKEEGWRARSAFKLLHIHDAYGILNGVRRAVDLCAAPGSWSQVLSRKLY 64

Query: 89  ----TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVL 140
                 +  + T+++A+D+  M PI GV   + D     + E I             LV+
Sbjct: 65  DTCQNDAEKSATKIIAVDLQAMAPIRGVLQLQGDITKESTAEAIISHFSADGQEKAQLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G  ++D      L  +A   A  +L  GG F+ K FQG  T  +   +K  F
Sbjct: 125 CDGAPDVTGVHEMDEYMQHQLLVSALSIATVVLETGGSFVAKIFQGNATGLLSTQMKIFF 184

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
            K    KP +SR+ S+E F++   F
Sbjct: 185 NKFDIYKPPSSRSSSIESFVVCSDF 209


>gi|121715190|ref|XP_001275204.1| cell division protein ftsj [Aspergillus clavatus NRRL 1]
 gi|119403361|gb|EAW13778.1| cell division protein ftsj [Aspergillus clavatus NRRL 1]
          Length = 323

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 124/283 (43%), Gaps = 81/283 (28%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W  R + D + + A ++G ++R+A+KLLQI+EK++I ++ + +VDLG +PGS
Sbjct: 24  RRHSSSKRWQARQLRDQFTKAAAVQGLKSRAAFKLLQIDEKYRIFKNGQTVVDLGYAPGS 83

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD----SWEFIR------- 129
           WSQVAA  T  N    RV+ +DI+  +P  GV   + +FLD +      EF+R       
Sbjct: 84  WSQVAATRTQPNG---RVLGVDIIPAQPPKGVSTIQGNFLDPEIQAYVQEFLRDPQRGRP 140

Query: 130 -----------------------------------------QAIGGNPDLVLSDMAYP-- 146
                                                     A G   D+VLSDM+ P  
Sbjct: 141 RALGQFPAAMHHNQVLISTTINNSLLGERSEADLRIDSQNDHASGRTVDVVLSDMSAPWY 200

Query: 147 -------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
                              T G    DH  +M LC AA  F+ + L  GG F+ K +QG 
Sbjct: 201 QTTGFWKRSLSDPYNRMMNTSGMSFRDHAGSMDLCRAALRFSYDTLKAGGHFVCKFYQGA 260

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAES-----VEMFLLAKGF 225
              D+   LK  FQKV  +KP +SR  S      ++ LL   F
Sbjct: 261 EDKDLEKQLKALFQKVHRIKPESSRTVSAQKLQRKLALLCTNF 303


>gi|322699567|gb|EFY91328.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Metarhizium acridum
           CQMa 102]
          Length = 430

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 110/278 (39%), Gaps = 82/278 (29%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINE-------------------KHQILQSNRRI 71
           ++   D Y + A+ +GWRARSA+KLLQ++E                   +  +  +  R+
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEGPSRLPPPSSPVTPRLTSPEFNLFANVSRV 64

Query: 72  VDLGSSPGSWSQVAARITGSNANNT----------------------------------- 96
           VDL ++PGSWSQV +R+   N                                       
Sbjct: 65  VDLCAAPGSWSQVLSRVLIENEQFGLRSWQDGEAHLRRSMLSVLPASTTPGGKEAVEAAI 124

Query: 97  -------------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG---------- 133
                        ++VAID+  + P+ G+   + D     +   +  A+           
Sbjct: 125 AAQHAASRPRDDVKIVAIDLQPISPLAGITTLQADITHPATVPLLLGALDPGYDAQRAAA 184

Query: 134 -----GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
                   DLVLSD A    G   +D      L  AA   AL +L  GG F+ K F+G  
Sbjct: 185 EGKASHPVDLVLSDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRN 244

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            + +   LK  F++V+  KP +SRA S+E F++   FR
Sbjct: 245 VDVLYAQLKIFFERVVVAKPRSSRASSMEAFIVCLNFR 282


>gi|259483730|tpe|CBF79360.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 330

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 121/276 (43%), Gaps = 73/276 (26%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS+ W  R + D Y + A ++G ++R+A+KLLQI+EK+++ +S + +VDLG +PG
Sbjct: 52  QKRFSSSKRWQARQLKDHYTREAAVQGLKSRAAFKLLQIDEKYRVFKSGQTVVDLGYAPG 111

Query: 80  SWSQVAARITGS---NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           SWSQV A  + +        RV+ +DI+  +P  GV   + +FLD +   ++R  +    
Sbjct: 112 SWSQVRATSSVALTRTRPAGRVLGVDIIPSQPPKGVSTIQGNFLDPEVQAYVRDFVRNPR 171

Query: 136 ----------------------------------------------PDLVLSDMAYP--- 146
                                                          D+VLSDM+ P   
Sbjct: 172 RGRPYSQGALQKVEDHDRMVESVLEASCTGGDLGEDYNGAVDAQRTVDVVLSDMSAPWLQ 231

Query: 147 ------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
                             T G    DH  +M LC AA  F+ E+L  GG F+ K +QG  
Sbjct: 232 TTGFWKRSLSNPYRRMMNTSGVPFKDHAGSMDLCRAALEFSFEVLRAGGHFVCKFYQGAE 291

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
              +   LK  F KV  +KP +SR  SV + LL  G
Sbjct: 292 DKILEKQLKVLFGKVHRLKPESSR--SVWICLLTSG 325


>gi|167947654|ref|ZP_02534728.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 175

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 4/156 (2%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   R+VDLG++PG WSQVA  + G      RVVA+DIL+M+PI GV   + DF +   
Sbjct: 1   IKPGMRVVDLGAAPGGWSQVARDLVGEKG---RVVALDILEMDPIAGVTIIQGDFREEGP 57

Query: 125 WEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
              +R+ + G P DLV+SDMA    G   +D  R+M LCE A  FA E+L  GG F+VK 
Sbjct: 58  LAQLREQLAGEPVDLVISDMAPNVTGMVTVDQPRSMYLCELALDFAKEVLRPGGGFVVKV 117

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           FQG   +D L  +++ F +V+  KP +SRA+S E++
Sbjct: 118 FQGEGFDDYLREMRQAFGRVVSRKPRSSRAKSREIY 153


>gi|22328933|ref|NP_194303.2| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|332659706|gb|AEE85106.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
          Length = 821

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S   ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  G---SLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K F+    N +L  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVEVFK 183

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR+ S E +L+   +
Sbjct: 184 PPASRSASAETYLVGLKY 201


>gi|320352800|ref|YP_004194139.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121302|gb|ADW16848.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
          Length = 200

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 9/201 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y ++A+ + + ARS YKL +   K++ L+  +R++DLG  PGSWS   A I G 
Sbjct: 2   RKEQDYYFKKAKKDNYPARSVYKLEEAQLKYKFLKGGQRVLDLGCHPGSWSLYTAGIVGE 61

Query: 92  NANNTRVVAID-----ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                 VVA D     IL  +P   + +  +D    +  ++++Q   G   +VLSDMA  
Sbjct: 62  KGT---VVAADLQRTEILTQKPHAEIHWLCYDVFSEEFVDYLKQHWPG-FHVVLSDMAPR 117

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G +  DH +++ L       ++  L+  G    K FQG      L   K  F  V  +
Sbjct: 118 TTGSQYADHQQSLLLARRVLELSVLFLHENGTLYCKVFQGEDFPAFLQECKPLFATVKVM 177

Query: 207 KPVASRAESVEMFLLAKGFRK 227
           KP +SR ES E+F+L +GFR+
Sbjct: 178 KPKSSRLESREVFVLGRGFRR 198


>gi|17381234|gb|AAL36036.1| AT4g25730/F14M19_10 [Arabidopsis thaliana]
          Length = 821

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S   ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  G---SLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K F+    N +L  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLYCLGRLFEKVEVFK 183

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR+ S E +L+   +
Sbjct: 184 PPASRSASAETYLVGLKY 201


>gi|255954837|ref|XP_002568171.1| Pc21g11390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589882|emb|CAP96036.1| Pc21g11390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 278

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 122/270 (45%), Gaps = 69/270 (25%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R    ++V  ++   SS+ W  R   D + + A ++G ++R+A+KLLQI+EK++I +  +
Sbjct: 11  RNACYKQVTVQARHASSKRWQARQQKDQFTREAAVQGLKSRAAFKLLQIDEKYRIFKGGQ 70

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
            +VDLG +PGSWSQVAA  T  +    RV+ +DI+  +P  GV   + +FL  +   +IR
Sbjct: 71  TVVDLGYAPGSWSQVAASRTQPHG---RVLGVDIIPAQPPKGVSTIQGNFLAPEIQTYIR 127

Query: 130 QAIGGN---------------------------------------------PDLVLSDMA 144
             +                                                 D+VLSDM+
Sbjct: 128 DFLRNPDRGRPRQSGFLDDSSISPLEPNSDTERTTEAEKGDMRGDKILERTVDVVLSDMS 187

Query: 145 YP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            P                     T G    DH  +M LC AA  F+ ++L  GG F+ K 
Sbjct: 188 APWYQTSGFWKRSLSAPYNRMMNTSGVSFRDHAGSMDLCHAALRFSSDVLKAGGHFVCKF 247

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           +QG    ++   LK+ F++V  +KP +SR+
Sbjct: 248 YQGAEDKELEQQLKELFKRVHRLKPESSRS 277


>gi|322491917|emb|CBZ27190.1| ribosomal RNA methyltransferase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 285

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 31/230 (13%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPG 79
            QG+SR W+ R   DP+V +A+ +G+ ARSAYKL+ I+++  +         +DLG SPG
Sbjct: 8   RQGTSRQWMQRQSQDPFVTKARQDGYVARSAYKLIHIDDRFHLFDRQHTRIAIDLGCSPG 67

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGG---- 134
            W QV     G       ++ +D+L ++  I  V   + DF D+ + E + Q +      
Sbjct: 68  GWCQVIRERAGDRCF---LLGVDLLPIKAQIPNVVIVQGDFTDVATQETLVQHLAHHSAT 124

Query: 135 -------------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                                D+V SDM    +G  + D  R   L   A      +L +
Sbjct: 125 LGGGDATTAVASSSSSCFTKVDVVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRV 183

Query: 176 GGDFLVKTFQGGT-TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           GG F+ K         ++ C L + F  V   KP ASR +S E FL+   
Sbjct: 184 GGHFVCKVLGSRAVYEELWCRLSRLFLTVHTCKPPASRMQSDEAFLVGLD 233


>gi|307555273|gb|ADN48048.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
           ABU 83972]
          Length = 157

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
             +VDLG++PG WSQ      G      R++A D+L M+PI+GV F + DF D    + +
Sbjct: 1   MTVVDLGAAPGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKAL 57

Query: 129 RQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
            + +G     +V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG 
Sbjct: 58  LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 117

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++ L  ++  F KV   KP +SRA S E++++A G +
Sbjct: 118 GFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 156


>gi|329766421|ref|ZP_08257965.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137020|gb|EGG41312.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 197

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 3/192 (1%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y + A  +G+R+R+AYKL Q+N  ++I+     ++DLG +PG W+Q+A ++ G+  
Sbjct: 7   RRDQYRKLAHEQGYRSRAAYKLKQLNHSYRIIGPGFYVLDLGCAPGGWTQMAVKLVGNKG 66

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
              +VV +D   +E I G    + +  +    + +        + V+ D++    G+  +
Sbjct: 67  ---KVVGVDTSYVEEIPGAHIIRENIENEFLVDELLSYFERKVNAVICDLSPQVTGNWSV 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH   +SL  + +    ++L   G+ + K F G  + +    +KK F ++   KP ASR 
Sbjct: 124 DHAIQISLNYSCSKIMDKVLMHKGNAIFKVFDGEYSMEFRDYIKKKFSRINLTKPEASRK 183

Query: 214 ESVEMFLLAKGF 225
           +S E++ +  GF
Sbjct: 184 QSSELYYVCLGF 195


>gi|298529995|ref|ZP_07017397.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509369|gb|EFI33273.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 198

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 8/195 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + I D Y ++A+ + + ARS YKL +++ +  +L+  ++++DLG+SPGSW   AA+   S
Sbjct: 2   KKIRDHYSRQARQDNYPARSVYKLKEMDRRFSLLRPGQKVLDLGASPGSWCSFAAQKVQS 61

Query: 92  NANNTRVVAIDILD--MEPILGVKFFKFDFL-DLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
                 V+A+D+ +  +     V F + D + D  + E +R       DLVLSDMA  T 
Sbjct: 62  RGF---VLAVDLKEPTLSFPQHVVFIQGDIINDNAAREQVRDF--APFDLVLSDMAPKTT 116

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +  D  R+  L   A   A EML  GG  +VK F+G    ++   +K  F++V H KP
Sbjct: 117 GIKITDQARSHELAREAFDLAREMLGPGGSMVVKIFEGPDVQELGREMKACFKRVKHFKP 176

Query: 209 VASRAESVEMFLLAK 223
            +SRAES E+FL+  
Sbjct: 177 KSSRAESKEIFLVGM 191


>gi|6759446|emb|CAB69851.1| cell division-like protein [Arabidopsis thaliana]
          Length = 287

 Score =  187 bits (475), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 13/189 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQV +R   
Sbjct: 5   SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                     + +   +VAID+  M PI GV   + D  +  + E  IR   G   DLV+
Sbjct: 65  LPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  A       +L  GG F+ K F+G  T+ + C     F
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQA---F 181

Query: 201 QKVIHVKPV 209
               +  P 
Sbjct: 182 AVCENYSPP 190


>gi|297809739|ref|XP_002872753.1| hypothetical protein ARALYDRAFT_911801 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318590|gb|EFH49012.1| hypothetical protein ARALYDRAFT_911801 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 804

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 9/201 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G R+R++YKLLQ++ K   L S+R ++DL ++PG W QVA +    
Sbjct: 7   KHRLDTYYRLAKESGLRSRASYKLLQLDAKFNFLHSSRTVLDLCAAPGGWMQVAVQKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFL------DLDSWEFIRQAIGGNPDLVLSDMAY 145
               + V+ ID++ + P+ G    + D                +       DLVL D + 
Sbjct: 67  G---SLVLGIDLVKIAPVRGCVTIQQDITRTTECKAKIKKALKKHGTDKTFDLVLHDGSP 123

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G    + +   +L   +   A E L   G+F+ K F+    + ++  L + F+ V  
Sbjct: 124 NVGGAWSQEAMSQNALVIDSLKLATEFLAPHGNFITKIFRSRDYDSVVYCLGELFENVEV 183

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP+ASR+ S E +LL   ++
Sbjct: 184 FKPMASRSTSAETYLLGLNYK 204


>gi|328873742|gb|EGG22109.1| rRNA methyltransferase [Dictyostelium fasciculatum]
          Length = 366

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 47/265 (17%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
           +++ RG+  +   ++ + S + W+ R + D +V  A+ E + +R+A+KL +I++K +IL+
Sbjct: 67  AAATRGILPRSIAKNLRTSDK-WVKRQMCDRFVSMAREENYVSRAAFKLEEIDDKFKILK 125

Query: 67  SNRRIVDLGSSPGSWSQVAARITG------------------------SNANNTRVVAID 102
               I+DLG+SPG +SQVA +                                  V+++D
Sbjct: 126 YGSTIIDLGASPGGFSQVAQKRCYFQTINTTLKSSTTNKNNQQNNQNQLKKRKGLVISVD 185

Query: 103 I------LDMEPILGV-------KFFKFDFLDLDSWEFIRQAIGGN-------PDLVLSD 142
           I      L      G+        F   DF    + + IRQ +  N        D V+SD
Sbjct: 186 INGEKFELYQSEEEGIAIEDRYTNFICGDFKLASTKQQIRQLLALNNKKTIASVDAVISD 245

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFAL--EMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           MA    G + +DH R +SL   A  FA+   +L  GG F+ K  +GG  N +   +K HF
Sbjct: 246 MAPSYCGVQSLDHDRLISLASDAFEFAISGNILKKGGSFVCKVSRGGQENLLFQRIKSHF 305

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           Q V   KP ASR ES E+F +A  F
Sbjct: 306 QTVKSFKPKASRQESTEIFFVALNF 330


>gi|221126837|ref|XP_002156038.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 188

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +   G SR        D +   A+  G+RARSA+KL+Q+N K   LQ +R ++DL +
Sbjct: 1   MGKKGKVGKSR-------KDKFYHLAKETGYRARSAFKLIQLNRKFAFLQESRVLIDLCA 53

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GN 135
           +PG W QVA+        ++ ++ ID++ ++PI  V   + D       + +R+ +   +
Sbjct: 54  APGGWLQVASNFM---PMSSVIIGIDLVPIKPIKNVTTIQADITTDKCRQLVRKELKTWS 110

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+VL+D A         D      L  +A   A E L  GG F+ K F+      +L +
Sbjct: 111 ADVVLNDGAPNVGAAWVQDAFSQAQLALSALKLASEHLKRGGWFITKVFRSKDYTALLWV 170

Query: 196 LKKHFQKVIHVKPVAS 211
            ++ F+KV   KP  S
Sbjct: 171 FQQLFKKVHATKPQVS 186


>gi|297799420|ref|XP_002867594.1| AT4g25730/F14M19_10 [Arabidopsis lyrata subsp. lyrata]
 gi|297313430|gb|EFH43853.1| AT4g25730/F14M19_10 [Arabidopsis lyrata subsp. lyrata]
          Length = 821

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S+  ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSSHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  G---SLVLGIDLVPILPVRGCVTMTQDITRSECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K F+    N +L  L + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLITKVFRSRDYNAVLYCLGRLFEKVEVFK 183

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR+ S E +L+   +
Sbjct: 184 PPASRSASAETYLVGLKY 201


>gi|262199868|ref|YP_003271077.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haliangium ochraceum DSM
           14365]
 gi|262083215|gb|ACY19184.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haliangium ochraceum DSM
           14365]
          Length = 199

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 6/197 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            R+ +D Y QRA+  G+ AR+ +KL +I++K  + +   R++DLG +PGSW Q      G
Sbjct: 7   RRNRHDVYHQRARKRGFLARAVFKLEEIDDKLDLFRRGDRVLDLGCAPGSWLQYCRTRVG 66

Query: 91  SNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                  +V ID   ++  I G +    D  ++ + E ++  +    D+VLSDMA  T G
Sbjct: 67  PTGE---LVGIDRGPLDAEIPGARLLSGDVFEV-APETLQGPLEA-FDVVLSDMAPDTTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            R +D  R+ SL E A   A  +L  GG+F+ K FQG   +D++   ++ F  V  VKP 
Sbjct: 122 IRHLDQARSESLFERALDIADAVLAPGGNFVGKLFQGPAFSDLVKRCRRDFDAVKIVKPK 181

Query: 210 ASRAESVEMFLLAKGFR 226
            SR  S+E +++A+G R
Sbjct: 182 GSRQRSIEQYVVARGRR 198


>gi|296127776|ref|YP_003635028.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira murdochii
           DSM 12563]
 gi|296019592|gb|ADG72829.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira murdochii
           DSM 12563]
          Length = 193

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y ++A+ E ++ARS +KL +   K + ++S+  ++D+G SPGS+SQ    +   
Sbjct: 2   KKVQDFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDTVLDVGCSPGSFSQY---MLNK 58

Query: 92  NANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                 VV +DIL          F   D  D+D+  F         D+V+SD    T   
Sbjct: 59  ILKTGSVVGVDILPNSFAHQRFTFMLGDIKDMDASSFNNTLF----DVVVSDAMPNTTSD 114

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R+ +H R++SLC A    A ++L   G F +K F G         L  +F+ V   KP +
Sbjct: 115 RETNHFRSVSLCRAIFNLAKDVLKENGHFFIKVFDGKDLQMFKKELSGYFESVNVFKPKS 174

Query: 211 SRAESVEMFLLAKGFRK 227
           SR ES E+FL  K F+K
Sbjct: 175 SRDESREVFLFCKNFKK 191


>gi|296416047|ref|XP_002837692.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633575|emb|CAZ81883.1| unnamed protein product [Tuber melanosporum]
          Length = 354

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 55/252 (21%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            W  R I D +   A+ +  ++R+ YKL++++ KH I    + +VDLG +PG+WSQVA  
Sbjct: 93  QWKRRQIRDVFATAAKRDDMKSRAGYKLIELDYKHGIFGPGQTVVDLGFAPGAWSQVAID 152

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--------------- 132
                    RV+ +DIL   P  GV  F+         E +++ +               
Sbjct: 153 KVTPEG---RVIGVDILPANPPPGVSTFQGSMKSPGVRELLKKFLMDPSRGKMRENRYLR 209

Query: 133 -------------------------------------GGNPDLVLSDMAYPTIGHRKIDH 155
                                                 G  D+VLSDM   T G    DH
Sbjct: 210 KGDVDEEELEEMERGYLDRERDAEREEKFEGVGEDDTRGPVDVVLSDMLMNTSGIPVRDH 269

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
             ++ LC  A  FA+++L   G F+ K + G    ++   LK  F  V   KP ASR ES
Sbjct: 270 AYSIDLCYTAMSFAMDVLKTSGVFVCKVYSGDQECELKAKLKLMFSTVYCDKPEASRTES 329

Query: 216 VEMFLLAKGFRK 227
            E++ ++K  RK
Sbjct: 330 REVYYVSKLLRK 341


>gi|269860030|ref|XP_002649738.1| tRNA (Gm34, Gm37) 2'-O-methyltransferase [Enterocytozoon bieneusi
           H348]
 gi|220066797|gb|EED44268.1| tRNA (Gm34, Gm37) 2'-O-methyltransferase [Enterocytozoon bieneusi
           H348]
          Length = 264

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 6/196 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-RIVDLGSSPGSWSQVAARIT 89
           +R   D Y   A+   +RARS +KL QI+EK+ +       ++DL ++PGSWSQ  + + 
Sbjct: 5   SRDKRDVYYFMAKQNNYRARSIFKLKQIDEKYNVFNDTDINVLDLCAAPGSWSQYLSELK 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
            +  N   ++A+D+ DM PI GV  +K D  +    +FI++      + V+ D A    G
Sbjct: 65  ANRKNINNIIAVDLQDMMPIEGVTIYKDDITNE---QFIKKLSNMQINRVICDGAPDVTG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
             ++D    + L +A+    L + N   +  F+ K F+G  T  I+   K++FQ+VI  K
Sbjct: 122 FYELDLYAQIDLLKASLKITLHVCNDYNNVIFISKLFRGKYTKYIIHYFKQYFQEVILTK 181

Query: 208 PVASRAESVEMFLLAK 223
           P ASR+ S E F++ K
Sbjct: 182 PRASRSTSNEAFIVCK 197


>gi|332297375|ref|YP_004439297.1| Ribosomal RNA large subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
 gi|332180478|gb|AEE16166.1| Ribosomal RNA large subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
          Length = 198

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  EG+ ARS YKL +I+EK  +++ N R++DLG+SPGSW+    R    + + 
Sbjct: 10  DYWSRKAFSEGYPARSVYKLKEIDEKFGMIRKNYRVLDLGASPGSWTVFVLRALDGSGHV 69

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           T V    +        + F + D  D D      +   G  DLV+ D A PT G+R +D 
Sbjct: 70  TSVDLNPLAKNVKGENLTFIQGDLYDADVRRQAMEL--GPYDLVVCDAAPPTTGNRVVDT 127

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R+  L E A ++A  ML  GG+F VK FQGG    +L  ++  F      KP A R+ES
Sbjct: 128 ARSTGLVELAVYYAQTMLKAGGNFAVKVFQGGDQQALLKTMRGMFSSAKGFKPEACRSES 187

Query: 216 VEMFLLAKGFR 226
            E +L+  G +
Sbjct: 188 FETYLVGLGKK 198


>gi|221057686|ref|XP_002261351.1| methyltransferase [Plasmodium knowlesi strain H]
 gi|194247356|emb|CAQ40756.1| methyltransferase, putative [Plasmodium knowlesi strain H]
          Length = 1009

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I +    ++DL ++PG W QVA +    ++  
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYKNMKRSST- 71

Query: 96  TRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKI 153
             ++ +D++ +  I   V   K D       + I+  I     D++L+D A         
Sbjct: 72  --IIGVDLVPIRKIDNNVITLKCDITTSACVKQIKNIIKNEKADVILNDGAPNVGTTYSY 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A   L   G F+ K F+      ++ +++K F +V H+KP +SR 
Sbjct: 130 DSFNQNVLVLNSIKIANLFLKKKGIFITKVFRNEEYVSLIWVMEKLFGQVKHIKPRSSRE 189

Query: 214 ESVEMFLLAKGF 225
            S E++L+   F
Sbjct: 190 ISSEIYLVGLNF 201


>gi|50289513|ref|XP_447188.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526497|emb|CAG60121.1| unnamed protein product [Candida glabrata]
          Length = 281

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 120/258 (46%), Gaps = 52/258 (20%)

Query: 14  TQKVKNRS-CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RR 70
             + +NR   + SS+ WL+R   D Y + ++L+  R+R+ +KL Q+++ + +   +  +R
Sbjct: 13  AHRTQNRCYSRASSKRWLDRQKQDFYTRESKLDNLRSRAGFKLAQLDDVYHVFHKSVPQR 72

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           I+DLG +PG+WSQVA + T  ++    V+ +DIL  +P  GV   + + L   + + IRQ
Sbjct: 73  ILDLGYAPGAWSQVARKRTHPDSI---VLGVDILPCDPPFGVSSMQANILSKRTHQLIRQ 129

Query: 131 AI-------------------------GGNPDLVLSDM---------------------A 144
                                          +++LSDM                      
Sbjct: 130 FFMEQIFMNDSQVESMARNDSDTEQQPQFPVNIILSDMYEPFPQLSPSLNNLTNMPYYRM 189

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
             T G    DHL ++ LC+AA   A+++L   G F+ K F G  T+     +KK F +V 
Sbjct: 190 SNTSGLNFKDHLNSIDLCDAALITAVDLLEPAGSFICKQFSGAETSLFEKRMKKVFDRVE 249

Query: 205 HVKPVASRAESVEMFLLA 222
             KP ASR ES E++ + 
Sbjct: 250 ITKPSASRDESKEIYFIG 267


>gi|162605884|ref|XP_001713457.1| SAM-dependent methyltransferase [Guillardia theta]
 gi|13794389|gb|AAK39766.1|AF083031_123 SAM-dependent methyltransferase [Guillardia theta]
          Length = 288

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 6/195 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D +  +A+    R+R+A+KLL +N+K    + +R I+DL S+PG W Q+   ++  N  
Sbjct: 4   KDYWYHQAKKFNLRSRAAFKLLHLNDKFNFFKKSRSILDLCSAPGGWLQMCRILSNENC- 62

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDS---WEFIRQAIGGNPDLVLSDMAYPTIGHR 151
             ++  +D   + PI   + F  D    +     E I         ++L+D +       
Sbjct: 63  --KIFGVDAQKISPIKKCETFIGDITSPNLIGLLEKIVIKTNRKFCIILNDGSPKMGTFW 120

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             D      L           L   G F+ K F+    N IL ++K  F+KV   KP +S
Sbjct: 121 NRDAYNQNILVLYCLRIIRLFLKNNGWFITKIFRSENFNKILFVVKNMFEKVFIKKPKSS 180

Query: 212 RAESVEMFLLAKGFR 226
           R  S E++L+ K F+
Sbjct: 181 RPNSAEIYLICKKFK 195


>gi|88602762|ref|YP_502940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanospirillum
           hungatei JF-1]
 gi|121697642|sp|Q2FNX6|RLME_METHJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|88188224|gb|ABD41221.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanospirillum hungatei
           JF-1]
          Length = 207

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 6/191 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D    +A+  G+R+R+A KL +I +K+ +++ +  I+DLG++PGSW QV   +      
Sbjct: 7   KDKAYLKAKQSGYRSRAAMKLKEIIQKNPVIRPDDNILDLGAAPGSWLQVLREM-----T 61

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
           N  +V +D+  + PI GV+    DF D      IR+ +    + ++ D +    G R  D
Sbjct: 62  NGVIVGVDLNPILPIEGVRTIIGDFSDPVVIAQIRELM-PEVNGIVCDASPKLSGQRSFD 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R + L E A   A ++L  GG+ ++K+FQG   + +   +K+ F  V   K   +R  
Sbjct: 121 QARAIELNEMALGVARQLLKQGGNMIMKSFQGEDFSWLYNRVKQEFYSVRTYKAHTTRKG 180

Query: 215 SVEMFLLAKGF 225
           S EM+++AK F
Sbjct: 181 STEMYIIAKNF 191


>gi|51246761|ref|YP_066645.1| ribosomal RNA methyltransferase (FtsJ) [Desulfotalea psychrophila
           LSv54]
 gi|81641141|sp|Q6AJ42|RLME_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|50877798|emb|CAG37638.1| related to ribosomal RNA methyltransferase (FtsJ) [Desulfotalea
           psychrophila LSv54]
          Length = 201

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 9/201 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R IND Y ++A+ + + ARS YKL +  +K+ I+     I+DLG  PGSWS  A+ + G 
Sbjct: 2   RKINDYYAKKAKKDNYPARSIYKLEEAQKKYDIISRGDSILDLGCFPGSWSIYASELAGP 61

Query: 92  NANNTRV-----VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                 V     V     D  PI    +   D  +    E +R  I  +  +++SDMA  
Sbjct: 62  KGIVVGVDLQQAVGGGRADAAPI---HWICEDIREPAMLEAVR-RIRPSFRVLISDMAPK 117

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T G+R  D  ++++LC      A ++L   G+++ K FQGG   D +  +KK F+    +
Sbjct: 118 TTGNRWTDAQQSLNLCYQTLEIAEQVLLNKGNYICKVFQGGDFPDFVDAVKKRFESARVI 177

Query: 207 KPVASRAESVEMFLLAKGFRK 227
           KP +SR ES E+F+L   +RK
Sbjct: 178 KPQSSRIESREVFVLGLNYRK 198


>gi|242765533|ref|XP_002340993.1| ftsj, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724189|gb|EED23606.1| ftsj, putative [Talaromyces stipitatus ATCC 10500]
          Length = 814

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 117/281 (41%), Gaps = 76/281 (27%)

Query: 19  NRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSP 78
           N     SS+ W +R  +D + + A + G ++R+A+KLLQI+E+++I +  + +VDLG +P
Sbjct: 525 NFKRFSSSKRWQSRQRSDIFTREAVVRGLKSRAAFKLLQIDEQYRIFRRGQTVVDLGYAP 584

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGV-----KFFKFDF-------------- 119
           GSWSQVA   T  N    RV+ +DI+  +P  GV      F   D               
Sbjct: 585 GSWSQVAVTRTKPNG---RVLGVDIIPAQPPKGVSTIQGNFLSPDIQEYVLEFVRDPNRG 641

Query: 120 ------------------LDLDSWEFIRQ---------------AIGGNPDLVLSDMAYP 146
                              D    E + +                     D+VLSDM+ P
Sbjct: 642 RPRLPTLSPEEPGRIAADDDSTVLEALSESAVTASEKGKEENGLQKERTVDVVLSDMSAP 701

Query: 147 ---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
                                T G    DH  +M LC AA  F+  +L  GG F+ K +Q
Sbjct: 702 WAQVKGFSNRSLSNPYRRMMNTSGISFRDHAGSMDLCRAALQFSFNVLKPGGHFVCKFYQ 761

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           G         LK  F+KV  +KP +SR+ES E F +A   +
Sbjct: 762 GPEDKVFEKQLKALFEKVHRLKPESSRSESREAFFVAMTRK 802


>gi|323447697|gb|EGB03609.1| hypothetical protein AURANDRAFT_33790 [Aureococcus anophagefferens]
          Length = 311

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVA 85
           +R   D Y + A+   +RAR+A+KLLQ++    IL +       R+ DL ++PG WSQV 
Sbjct: 5   SRDKRDIYYRLAKTSNYRARAAFKLLQLDATLGILSTATTHDRLRVADLCAAPGGWSQVV 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLS 141
           A          RVVA+D+  M PI GV+    D     +   +  A+GG  D    +VL 
Sbjct: 65  AERRPG----ARVVAVDLKPMAPIAGVEMVLGDITAAATAREVVDALGGGADARRGVVLC 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A   IG   +D      L  AA+    E   +GG F+ K ++G     +L  L+KHF+
Sbjct: 121 DGAPDVIGLNDVDEHLQNELARAASGR-REPPFLGGCFVSKVYRGRDATALLESLRKHFR 179

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP  SR+ S E F++ +GF
Sbjct: 180 SVFVAKPRCSRSASPEAFVVCRGF 203


>gi|296828096|ref|XP_002851274.1| ribosomal RNA methyltransferase MRM2 [Arthroderma otae CBS 113480]
 gi|238838828|gb|EEQ28490.1| ribosomal RNA methyltransferase MRM2 [Arthroderma otae CBS 113480]
          Length = 292

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 123/285 (43%), Gaps = 59/285 (20%)

Query: 1   MVKPPGSS-SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M+KP   S +    +   K      SS+ W  R   D Y + A ++G ++R+A+KLLQIN
Sbjct: 1   MLKPTVQSWALPSCSSLSKLFFRSISSKQWQARQGKDTYTKEAGMQGLKSRAAFKLLQIN 60

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------------- 106
           +++++ +S + +VDLG +PGSWSQVA  +T        V  I                  
Sbjct: 61  DRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPRGRVVGVDIIPAQPPRGVSTIQGNFLSP 120

Query: 107 -----------EPILGVKFFKFD-FLD--------------------------------- 121
                      +P  G    +   F D                                 
Sbjct: 121 RVQEYVKDFVRDPHRGRPRSQLSTFTDQEETAPNPDPENDEGYIDLERSSSAHINKEERG 180

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +S + +R A  G+ D+VLSDM   T G +  DHL +M LC+AA  FA  +L  GG F+ 
Sbjct: 181 EESNQPLRNARVGSVDVVLSDMLMNTSGTKSRDHLGSMELCKAALDFASVVLKQGGHFVC 240

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +QG    +    LK+ F +V   KP +SR+ES E + +    R
Sbjct: 241 KYYQGSGEKEFENELKRLFYRVYREKPDSSRSESKEAYFIGIRRR 285


>gi|224033613|gb|ACN35882.1| unknown [Zea mays]
          Length = 190

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 10/176 (5%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+++  I    + +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKHVVDLCAAPGSWSQVLSRNLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                       +   +VAID+  M PI GV   + D  +  + +  IR   G   DLV+
Sbjct: 65  VPAKQSSDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTADVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C +
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALAIVTHVLKVGGKFVAKIFRGKDTSLLYCQV 180


>gi|213408265|ref|XP_002174903.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Schizosaccharomyces
           japonicus yFS275]
 gi|212002950|gb|EEB08610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Schizosaccharomyces
           japonicus yFS275]
          Length = 217

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 13/212 (6%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL--GSSPGSWSQ 83
           SR W     +D + + ++   +R+R+AYKL+ +N KH I      ++DL  G +PGSWSQ
Sbjct: 8   SRTWAKARASDCFSKLSKKNNYRSRAAYKLIDLNRKHHIFNEGDTVIDLVKGFAPGSWSQ 67

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP------- 136
           VA +  G       V+ +D+  + P  GV     D  +  +   + Q +  +        
Sbjct: 68  VALKAVGPYGM---VIGVDVRFVNPPQGVHAIIGDVKNNVTVNGVYQLLKKHYGNTQNNQ 124

Query: 137 -DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDM +   G    DH  ++SLC AA  F+  +L   G  + K ++G   N     
Sbjct: 125 CDVVISDMFHNATGIPFRDHTISISLCRAALEFSEHVLRSKGILICKYYKGIEENRFFKE 184

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L+ HF++VI  KP ASR ES E + +    +K
Sbjct: 185 LQSHFREVIRAKPKASRKESKENYFVCLDKQK 216


>gi|124513798|ref|XP_001350255.1| methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23615672|emb|CAD52664.1| methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 1019

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K  + ++   ++DL ++PG W QVA +   + +  
Sbjct: 13  DKYYKLAKTAGYRARSAFKLIQIAQKFNVFKNANILIDLCAAPGGWLQVAYK---NMSKQ 69

Query: 96  TRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKI 153
           + ++ +D++ +  I   V   K D    D  + I+  I     D++L+D A         
Sbjct: 70  STIIGVDLVPIRKIDDNVITIKSDITTSDCIKKIKNIIKMDKADVILNDGAPNVGTTYSY 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A   L   G F+ K F+      ++ +L+K F  V H+KP +SR 
Sbjct: 130 DSFNQNVLVLNSIKIAYIFLKKNGIFITKVFRNEEYISLIWVLEKLFGDVKHIKPRSSRE 189

Query: 214 ESVEMFLLAKGF 225
            S E++L+   F
Sbjct: 190 ISSEIYLVGLNF 201


>gi|300869923|ref|YP_003784794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
           95/1000]
 gi|300687622|gb|ADK30293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
           95/1000]
          Length = 194

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           + + D Y ++A+ E ++ARS +KL +   K + ++S+  ++D+G SPGS+SQ    +   
Sbjct: 2   KKVQDFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDNVLDVGCSPGSFSQY---MLNK 58

Query: 92  NANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                 VV +DIL         KF   D  ++D+  F         D+V+SD    T   
Sbjct: 59  IIKTGSVVGVDILPNNFSHQRFKFILGDIKEMDASTFDNIEF----DVVVSDAMPNTTSD 114

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R+ +HLR++ LCE   + A ++L   G+F +K F G    +    L  +F  V   KP +
Sbjct: 115 RETNHLRSIGLCEKIFYLAKDVLKDNGNFFIKVFDGKDLPNFKKELNDYFDSVTVFKPKS 174

Query: 211 SRAESVEMFLLAKGFRK 227
           SR ES E+FL AKGF+K
Sbjct: 175 SRDESREVFLFAKGFKK 191


>gi|156101269|ref|XP_001616328.1| FtsJ-like methyltransferase [Plasmodium vivax SaI-1]
 gi|148805202|gb|EDL46601.1| FtsJ-like methyltransferase, putative [Plasmodium vivax]
          Length = 1006

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 5/192 (2%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I +    ++DL ++PG W QVA +    ++  
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYKNMKRSST- 71

Query: 96  TRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKI 153
             ++ +D++ +  I   V   K D       + I+  I     D++L+D A         
Sbjct: 72  --IIGVDLVPIRKIDNNVITLKCDITTGACIKQIKNIIKNEKADVILNDGAPNVGTTYSY 129

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D      L   +   A   L   G F+ K F+      ++ +++K F +V H+KP +SR 
Sbjct: 130 DSFNQNVLVLNSIKIANLFLKKRGIFITKVFRNEEYVSLIWVMEKLFGQVKHIKPRSSRE 189

Query: 214 ESVEMFLLAKGF 225
            S E++L+   F
Sbjct: 190 ISSEIYLIGLNF 201


>gi|153003960|ref|YP_001378285.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp.
           Fw109-5]
 gi|189044084|sp|A7H9A5|RLME_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|152027533|gb|ABS25301.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp.
           Fw109-5]
          Length = 276

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 5/193 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ EG RARSA+K+ +I  +H++L+  + ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKEGLRARSAFKIDEILRRHRLLRKGQAVLDLGAAPGGFLQILADEVGETGV 67

Query: 95  NTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
               V +D+  +  +    VK    D L   + + IR    G   LV SDMA  TIG + 
Sbjct: 68  ---AVGVDLEPVRRLGKPWVKTAIVDLLSPGALDQIRTLHAGPFQLVTSDMAPKTIGVKI 124

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R++ L   A   A + L  GG F+ K F GG    +   L+  F +V  ++P A R
Sbjct: 125 TDEARSLELVRMALDVAEKTLAPGGAFVAKVFMGGEFPVLKKELQARFDEVHVIRPEAVR 184

Query: 213 AESVEMFLLAKGF 225
             S E+++L KG 
Sbjct: 185 ESSYEVYVLGKGL 197


>gi|86157470|ref|YP_464255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123499845|sp|Q2IPT3|RLME_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|85773981|gb|ABC80818.1| 23S rRNA Um-2552 2'-O-methyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 267

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ +G RARSA+K+ +I  +H++L     ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILAEAVGEKGV 67

Query: 95  NTRVVAIDILDMEPILG-----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
              V      D+EPI       V+    D L  D+ + IR    G   LV SDMA  TIG
Sbjct: 68  AVGV------DLEPIRNLGKRWVRTAIVDLLAPDALDKIRLLHDGRFRLVTSDMAPKTIG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A ++L  GG F+ K F GG    +   L+  F  +  ++P 
Sbjct: 122 IKVTDEARSLELVRMALSVAEQVLVPGGAFVAKVFMGGDFPALKRELQGRFAAMHVIRPE 181

Query: 210 ASRAESVEMFLLAKGFR 226
           A R  S E+++L  GFR
Sbjct: 182 AVRESSYEVYVLGTGFR 198


>gi|16082347|ref|NP_394821.1| hypothetical protein Ta1365 [Thermoplasma acidophilum DSM 1728]
 gi|74581427|sp|Q9HIH4|RLME_THEAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|10640708|emb|CAC12486.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 205

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/200 (35%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           ++    D Y  RA+ + +R+R+AYKL  + E++ I++  + ++++GSSPG W+QV     
Sbjct: 1   MSSDHRDQYYWRAKRDQFRSRAAYKLEFLIERYGIIKDGQAVLEIGSSPGGWTQVLVD-- 58

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVLSDMAY 145
               +  RVVA+DI  M+ I GV F K + L  D+ E IR+ +        D+VLSD   
Sbjct: 59  ----HGCRVVAVDIQPMDEIPGVIFLKLNILREDAAERIREEMARSLVQRFDVVLSDAMA 114

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            T G R  DH  ++ +  A    A++ L  GG  +VK FQG  T D +     +F+    
Sbjct: 115 KTSGIRSSDHAASVMIGNAVMKIAMDTLRRGGVAVVKQFQGDMTGDFIKNWGHYFRDHRI 174

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP ASR ES E++++  GF
Sbjct: 175 TKPPASRKESSEVYIIFYGF 194


>gi|256080076|ref|XP_002576309.1| cell division protein ftsj [Schistosoma mansoni]
 gi|238661574|emb|CAZ32546.1| cell division protein ftsj, putative [Schistosoma mansoni]
          Length = 244

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 32/231 (13%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH--QILQSNRRIVDLGSSPGSWSQVA 85
            W+ R  +DPYV+RA LE +R RSA+KLLQ+N+K    I +    +VD G++PGSW QVA
Sbjct: 6   KWIARQRSDPYVKRAHLESYRCRSAFKLLQLNDKISGGIFKPGDIVVDCGAAPGSWCQVA 65

Query: 86  ARI------------TGSNANNTRVVAIDILDMEPILGVKFFKF-DFLD-LDSWEFIRQA 131
           + +              +N N   V+A D+L+  P+ GV      D  +  +    I Q+
Sbjct: 66  SSLTNCNNNNNNNLKASNNQNKGLVIAFDLLNFAPLPGVITHCGVDLNNWSECINLINQS 125

Query: 132 IGGN---------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           I  +          D+VLSD+A    G R+ID    M L       A+ +   G  F++K
Sbjct: 126 ISSHFNNNNNNDGVDVVLSDIAPNVAGMREIDIPAMMKLAYNILRVAISVSKEGATFVIK 185

Query: 183 TFQGGTTNDILCLLKKHF-------QKVIHVKPVASRAESVEMFLLAKGFR 226
            FQ     +    + + +            +KP ASR ES E++L+A+GF+
Sbjct: 186 LFQSQEAEEFKQTVSQFYTLNSKCPSFTRFIKPEASRKESSEIYLVARGFQ 236


>gi|197121510|ref|YP_002133461.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp. K]
 gi|196171359|gb|ACG72332.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp. K]
          Length = 318

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ +G RARSA+K+ +I  +H++L     ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILADAVGEKGV 67

Query: 95  NTRVVAIDILDMEPILG-----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
              V      D+EPI       V+    D L  D+ + IR    G   LV SDMA  TIG
Sbjct: 68  AVGV------DLEPIRNLGKRWVRTAVVDLLAPDALDKIRLLHEGRFRLVTSDMAPKTIG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A ++L  GG F+ K F GG    +   L+  F  +  ++P 
Sbjct: 122 IKVTDEARSLELVRMALSVAEQVLVPGGAFVAKVFMGGDFPALKRELQGRFAAMHVIRPE 181

Query: 210 ASRAESVEMFLLAKGFR 226
           A R  S E+++L  GFR
Sbjct: 182 AVRESSYEVYVLGTGFR 198


>gi|156060649|ref|XP_001596247.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154699871|gb|EDN99609.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 367

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 29/225 (12%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINE---------------KHQILQSNRRIVDLG 75
           ++   D Y + A+ +GWRARSA+KLLQ++E               + +  +  + I+ + 
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEGIEPHYTAAFGRAAWEDKEARMRQNILGIA 64

Query: 76  SSPGSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG- 133
           + P S  Q    ++        ++VAID+  M P+ G+   + D     +   +  A+  
Sbjct: 65  TQPISEEQQTTGVSELKPKKDVKIVAIDLQPMSPLQGIITLRADITHPATVPLLLNALDS 124

Query: 134 ------------GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
                          DLV+SD A    G   +D      L  AA   AL +L  GG F+ 
Sbjct: 125 SYDPKSLSQQASNPVDLVISDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLRPGGKFVA 184

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+G   + +   LK  F++V+  KP +SRA SVE F++   F+
Sbjct: 185 KIFRGRNVDLLFAQLKIFFERVVVAKPRSSRASSVEAFIVCLNFQ 229


>gi|224035899|gb|ACN37025.1| unknown [Zea mays]
          Length = 202

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 12/186 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI-- 88
           ++   D Y ++A+ EGWRARSA+KLLQI+++  I    + +VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKHVVDLCAAPGSWSQVLSRNLY 64

Query: 89  -------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE-FIRQAIGGNPDLVL 140
                       +   +VAID+  M PI GV   + D  +  + +  IR   G   DLV+
Sbjct: 65  VPAKQSSDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTADVVIRHFDGCKADLVV 124

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
            D A    G   +D      L  AA      +L +GG F+ K F+G  T+ + C  +   
Sbjct: 125 CDGAPDVTGLHDMDEFVQSQLILAALAIVTHVLKVGGKFVAKIFRGKDTSLLYCQRRL-- 182

Query: 201 QKVIHV 206
           + V   
Sbjct: 183 RSVRTT 188


>gi|323445643|gb|EGB02153.1| hypothetical protein AURANDRAFT_8728 [Aureococcus anophagefferens]
          Length = 203

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVA 85
           +R   D Y + A+   +RAR+A+KLLQ++    IL +       R+ DL ++PG WSQV 
Sbjct: 5   SRDKRDIYYRLAKTSNYRARAAFKLLQLDATLGILSTATTHDRLRVADLCAAPGGWSQVV 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLS 141
           A          RVVA+D+  + PI GV+    D     +   +  A+GG  D    +VL 
Sbjct: 65  AERRPG----ARVVAVDLKPIAPIAGVEMVLGDITAAATAREVVDALGGGADARRGVVLC 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           D A   IG   +D      L  AA+    E   +GG F+ K ++G     +L  L+KHF+
Sbjct: 121 DGAPDVIGLNDVDEHLQNELARAASGR-REPPFLGGCFVSKVYRGRDATALLESLRKHFR 179

Query: 202 KVIHVKPVASRAESVEMFLLAKGF 225
            V   KP  SR+ S E F++ +GF
Sbjct: 180 SVFVAKPRCSRSASPEAFVVCRGF 203


>gi|302344658|ref|YP_003809187.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfarculus baarsii
           DSM 2075]
 gi|301641271|gb|ADK86593.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfarculus baarsii
           DSM 2075]
          Length = 207

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 9/199 (4%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D Y +RA+ EG+ ARS YKL ++++++ +L+   R++D+G  PGSW Q AA   G
Sbjct: 3   SRKDQDSYYRRAKQEGFAARSVYKLQEMDQRYGLLRQGMRVLDIGCHPGSWLQYAAGRVG 62

Query: 91  SNANNTRVVAIDILDME---PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
                  V+ +DI ++    P  G +F + D L L   E +  A+    D+VLSD+A  T
Sbjct: 63  PGG---LVLGVDIQELAVDLPRWG-RFIQADVLKLTPAEVL--AVAPAFDVVLSDVAPRT 116

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G R  D   ++++ EA    AL +L  GG FL K + G   + ++  +K  F+     K
Sbjct: 117 TGVRHADEAASLAMLEAVFDLALAVLRPGGSFLAKVYFGPGVDQLIHQVKGRFKLGKGHK 176

Query: 208 PVASRAESVEMFLLAKGFR 226
           P AS+A S E+++L +  +
Sbjct: 177 PAASKAASKEIYILGRELK 195


>gi|219851444|ref|YP_002465876.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosphaerula
           palustris E1-9c]
 gi|254809556|sp|B8GG79|RLME_METPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|219545703|gb|ACL16153.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosphaerula
           palustris E1-9c]
          Length = 203

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D   +RA  EG+R+R+AYKL +I E+  I++ +  IVDLG++PGSW QV   +T     
Sbjct: 7   KDKVYRRAMNEGFRSRAAYKLQEIQERFSIIREDDNIVDLGAAPGSWLQVERTLTK---- 62

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
             +V+ +D+  +  I GV     D    +  + ++  +G   ++VL D +    GH+  D
Sbjct: 63  -GKVLGVDLNPIPSIDGVMTVVGDLTTSEVQQQVKDLVGV-VNVVLCDASPKLSGHKCYD 120

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             R + L E A  FA   +  GG+  +K+FQG   +++L  +KKHF  V      ++R  
Sbjct: 121 QARAIGLGEDALMFAARTMKQGGNMAMKSFQGEMFHELLEEVKKHFYVVKTFHTKSTRRG 180

Query: 215 SVEMFLLAKGF 225
           S E++++AK F
Sbjct: 181 STEIYIVAKNF 191


>gi|154337806|ref|XP_001565129.1| ribosomal RNA methyltransferase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062176|emb|CAM36564.1| ribosomal RNA methyltransferase-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 285

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 31/229 (13%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPGS 80
           QG+SR W+ R   DP+V +A+ +G+ ARSAYKL+ ++++  +        +VDLG SPG 
Sbjct: 9   QGTSRQWMQRQSQDPFVTKARQDGYVARSAYKLIHMDDRFHLFDRQHTRIVVDLGCSPGG 68

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGN---- 135
           W QV     G       ++ +D+L ++  I      + DF +  + E + + +  +    
Sbjct: 69  WCQVIRERAGDRCF---LLGVDLLPIKAKIPNAVIVQGDFTEAATEEKLVKRLAHHSATL 125

Query: 136 -------------------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                               D+V SDM    +G  + D  R   L   A      +L  G
Sbjct: 126 GRTDTVTAAAASSASRFTGVDIVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRTG 184

Query: 177 GDFLVKTFQGG-TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           G F+ K         ++ CLL + F  V   KP ASR  S E FL+A G
Sbjct: 185 GHFVCKVLGSRAAYEELWCLLSRLFLTVHTCKPPASRMHSDEAFLVALG 233


>gi|4539291|emb|CAB39594.1| putative protein [Arabidopsis thaliana]
 gi|7269423|emb|CAB81383.1| putative protein [Arabidopsis thaliana]
          Length = 821

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +H  D Y + A+  G+R+R++YKLLQ++ K+ +L S   ++DL ++PG W QVA      
Sbjct: 7   KHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVAVEKVPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
               + V+ ID++ + P+ G      D    +    I+Q +  +     +LVL D +   
Sbjct: 67  G---SLVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNLVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G    + +   +L   +   A E L   G+ + K         +  LL + F+KV   K
Sbjct: 124 GGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKMCVPEPFFLLAFLLVQLFEKVEVFK 183

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR+ S E +L+   +
Sbjct: 184 PPASRSASAETYLVGLKY 201


>gi|320535785|ref|ZP_08035866.1| ribosomal RNA large subunit methyltransferase J [Treponema
           phagedenis F0421]
 gi|320147333|gb|EFW38868.1| ribosomal RNA large subunit methyltransferase J [Treponema
           phagedenis F0421]
          Length = 197

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  EG+ ARS YKL +IN+K ++   + +I+DLG++PGSW+    R    NA  
Sbjct: 9   DFWTKKAFSEGYPARSVYKLEEINKKFKLFSPSDKILDLGAAPGSWTSFVLRRMTPNAMI 68

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             V    + +      + FF+ D       + +++   G  + V+ D A  T G++ +D 
Sbjct: 69  CAVDLKPLAENIIDERLHFFQGDLYSKQIIQSVKEL--GPYNAVICDAAPATTGNKTVDT 126

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
            R++ L E A F+A EML  GG+F VK FQGG    +L  ++  F  V   KP A R+ S
Sbjct: 127 ARSLGLVELAVFYAQEMLVKGGNFTVKIFQGGDRQQLLKDMRNIFDTVKTFKPQACRSSS 186

Query: 216 VEMFLLAKGFR 226
            E +L+    +
Sbjct: 187 FETYLIGLNRK 197


>gi|220916277|ref|YP_002491581.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954131|gb|ACL64515.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 298

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++A+ +G RARSA+K+ +I  +H++L     ++DLG++PG + Q+ A   G    
Sbjct: 8   KDFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILADAVGEKGV 67

Query: 95  NTRVVAIDILDMEPILG-----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
              V      D+EPI       V+    D L  D+ + IR    G   LV SDMA  TIG
Sbjct: 68  AVGV------DLEPIRNLGKRWVRTAVVDLLAPDALDKIRLLHEGRFRLVTSDMAPKTIG 121

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            +  D  R++ L   A   A ++L  GG F+ K F GG    +   L+  F  +  ++P 
Sbjct: 122 IKVTDEARSLELVRMALSVAEQVLVPGGAFVAKVFMGGDFPALKRELQGRFAAMHVIRPE 181

Query: 210 ASRAESVEMFLLAKGFR 226
           A R  S E+++L  GFR
Sbjct: 182 AVRESSYEVYVLGTGFR 198


>gi|32490981|ref|NP_871235.1| hypothetical protein WGLp232 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741765|sp|Q8D2X0|RLME_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|25166187|dbj|BAC24378.1| ftsJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 203

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 108/201 (53%), Gaps = 4/201 (1%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  WL+ H +D +V+ ++   +R+R+ +K+ +I +K+ I++    ++D+GSSPG WS+ +
Sbjct: 6   SNWWLSEHYSDKFVKESKKCKYRSRAWFKIDEIQKKNNIIKPGMVVLDIGSSPGGWSKYS 65

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           ++  G    + +V+A DI  M PI  V F   +  +  + + I++       ++L D++ 
Sbjct: 66  SQKVG---MSGKVIACDIDLMNPIPNVSFILGNIFEKITIKKIKKVK-KKVHIILCDISP 121

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   IDH R +SL          +L   G  ++K+F      +    ++  F+K+  
Sbjct: 122 NITGLSIIDHSRWISLNNNILNICKYLLLKNGKLIIKSFNSVEIKNFCKKIENSFKKIKI 181

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP++SR+ S E++++A  ++
Sbjct: 182 FKPISSRSRSKEIYIVAVNYK 202


>gi|257076513|ref|ZP_05570874.1| FtsJ-like methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 194

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  RA+ + +R+R++YKLL+I  K  ++     +++ GSSPG W+QV  ++T    
Sbjct: 3   RKDRYYTRAKKDNFRSRASYKLLEIQSKFNVIWKTDYVIEFGSSPGGWTQVVQKLTEKP- 61

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVLSDMAYPTIG 149
               V+AIDI  M+PI  V F + +  D +  E I+ A+      +   VLSD    T G
Sbjct: 62  ----VIAIDISPMDPIENVTFVQGNINDPELSEKIKIAMDSLGISSVSTVLSDAMIKTSG 117

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +   DH+ +  LC+     ++++L+ GG+ ++K FQG +T   +   K +F      KP 
Sbjct: 118 NYDRDHMGSYLLCDNVMNLSIDLLSSGGNVVLKQFQGDSTMAFVNKWKVYFNYYKVTKPN 177

Query: 210 ASRAESVEMFLLAKG 224
           ASR  S E++++ K 
Sbjct: 178 ASRQHSREVYIIFKD 192


>gi|307719842|ref|YP_003875374.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM
           6192]
 gi|306533567|gb|ADN03101.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM
           6192]
          Length = 194

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +D Y ++A+ EG+ ARS YKL++I +K++I+    R++DLG++PGSWS+      G    
Sbjct: 5   DDYYTRKAKREGYPARSVYKLMEIQQKYRIVSPGDRVLDLGAAPGSWSKYLLSCVGEKG- 63

Query: 95  NTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              VVA+D+L   +     + F++ DF   +  E +   +     +++SD A  T G+R 
Sbjct: 64  --LVVAVDLLPLVIGSHERLVFYQGDFTSDEVQERVD--VHAPFQVIVSDAAPSTSGNRG 119

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R+ +L E     A   L  GG+ + K FQG    +I   +++ +++   V+P A+R
Sbjct: 120 LDTARSEALVEGILSLAGRWLVPGGNLVAKLFQGSGAQEIFRAVREGWERAYFVRPRATR 179

Query: 213 AESVEMFLLAKGFR 226
            +S E+F++  G R
Sbjct: 180 RQSFEVFVVGVGRR 193


>gi|302662114|ref|XP_003022716.1| hypothetical protein TRV_03177 [Trichophyton verrucosum HKI 0517]
 gi|291186676|gb|EFE42098.1| hypothetical protein TRV_03177 [Trichophyton verrucosum HKI 0517]
          Length = 783

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 30  LNRHIN---DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
             +H     D + + A+ +G+RAR+A+KL+Q+N+K+  L+                    
Sbjct: 4   QKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEK------------------- 44

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAY 145
                       + +D+  ++PI  V  F+ D         IRQ       D VL D A 
Sbjct: 45  ------------IGVDLSPIKPIPKVITFQSDITTDKCRATIRQHFKTWKADTVLHDGAP 92

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                   D      L   +   A E L  GG F+ K F+    N +L + K+ F  V  
Sbjct: 93  NVGTAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQLFTTVEA 152

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S E+F++  GF+
Sbjct: 153 TKPPSSRNVSAEIFVVCLGFK 173


>gi|330836075|ref|YP_004410716.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
 gi|329747978|gb|AEC01334.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
          Length = 206

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            R+  D Y  RA+ EG+ ARS YKL +I +  +I++   +++D+G++PGSW+    R   
Sbjct: 5   KRNTADSYTLRARKEGYPARSVYKLEEIQKVFRIIRPGAKVLDVGAAPGSWTLYVHREIL 64

Query: 91  SNANNTRVVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
               +   V ++ L + P+   V  F  D    D    +   + G  D ++SD A  T G
Sbjct: 65  KGKGSIVAVDLNPLSLNPLPPSVMEFTGDAFSEDIRSLL--VVNGPYDAIISDAAPMTTG 122

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D  R+ +L E+    A E L   G+ ++K FQGG  N +L  +KK+F K    KP 
Sbjct: 123 NRMVDVARSENLAESVLSLAREHLKPHGNLVIKIFQGGGHNAVLADVKKYFIKSKTFKPA 182

Query: 210 ASRAESVEMFLLAKGFRK 227
           A R++S E +++    +K
Sbjct: 183 ACRSDSFETYIIGLDLKK 200


>gi|297460745|ref|XP_002701220.1| PREDICTED: FtsJ homolog 1-like [Bos taurus]
          Length = 291

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-E 126
             R VDL ++PGSWSQV ++  G    +  VVA+D+  M P+ GV   + D   L +  E
Sbjct: 4   VTRAVDLCAAPGSWSQVLSQKIGGQG-SGHVVAVDLQAMAPLPGVLQIQGDITQLSTAKE 62

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
            I+   G   DLV+ D A    G   +D      L  AA   A  +L  GG F+ K F+G
Sbjct: 63  IIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRG 122

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                I   L+  F  V+  KP +SR  S+E F + KG+
Sbjct: 123 RDVTLIYSQLRVFFSSVLCAKPRSSRNSSIEAFAVCKGY 161


>gi|312218785|emb|CBX98730.1| similar to AdoMet-dependent rRNA methyltransferase spb1
           [Leptosphaeria maculans]
          Length = 840

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 4/177 (2%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
           S  KL+Q+N+K+  L+ ++ ++DL ++PGSW QVA+ +  +    + +V +D+  ++ I 
Sbjct: 25  SMEKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVASEVMPAG---SLIVGVDLAPIKAIP 81

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
               F+ D         +RQ +     D VL D A         D      L   +   A
Sbjct: 82  RCITFQSDITTDKCRATLRQHLKHLKADAVLHDGAPNVGTAWVQDAFSQAELVLQSMKLA 141

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            E L  GG F+ K F+    N +L +  + F KV   KP +SR  S E+F++ +G++
Sbjct: 142 TEFLAEGGTFVTKIFRSKDYNSLLWVFNQLFTKVEATKPPSSRNVSAEIFVVCRGYK 198


>gi|48477697|ref|YP_023403.1| FtsJ-like methyltransferase [Picrophilus torridus DSM 9790]
 gi|74567879|sp|Q6L1E2|RLME_PICTO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|48430345|gb|AAT43210.1| FtsJ-like methyltransferase [Picrophilus torridus DSM 9790]
          Length = 194

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 9/195 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  RA+ E +R+R++YK+++IN K+ I+     +++ GSSPG W+QV       N 
Sbjct: 3   RKDKYYIRAKRENYRSRASYKIIEINNKYNIVSRGDNVLEFGSSPGGWTQVI-----ENI 57

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPTIG 149
             + ++A+DI  M+P+    F K +  D D ++ I  A+  N     D +LSD    T G
Sbjct: 58  TQSVIIAVDINRMDPVKNTVFIKMNIFDDDIFKSIDHAMAENNIKNFDSILSDAMSRTSG 117

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               DH  +  +CE     ++  L  GG+ ++K FQG  TN+ +     +F      KP 
Sbjct: 118 IEDRDHYNSYKICERVMDISIPRLKNGGNIILKQFQGDMTNEFIKKWSGYFNYYKITKPK 177

Query: 210 ASRAESVEMFLLAKG 224
           ASR  S E++++   
Sbjct: 178 ASRQHSREIYIIFLN 192


>gi|42527473|ref|NP_972571.1| cell division protein FtsJ [Treponema denticola ATCC 35405]
 gi|81831375|sp|Q73L97|RLME_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|41818058|gb|AAS12482.1| cell division protein FtsJ [Treponema denticola ATCC 35405]
 gi|325473730|gb|EGC76919.1| ribosomal RNA large subunit methyltransferase J [Treponema
           denticola F0402]
          Length = 199

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 8/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  E + ARS YKL ++N+K  +   N +++DLG++PGSW+    R        
Sbjct: 10  DYWSKKAFAENYPARSVYKLEEMNKKFNLFSPNDKVLDLGAAPGSWTVYVLRFLNKEG-- 67

Query: 96  TRVVAIDILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            RV A+D+  ++       + FF+ D  D    + +++   G  D V+ D A  T G++ 
Sbjct: 68  -RVTAVDLKPLDSSVYDERLNFFQGDMFDKGIIKSVKEL--GPYDAVICDAAPATTGNKT 124

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R+  L E A ++A E L  GG F+VK FQGG     L  L+K F+     KP A R
Sbjct: 125 VDTARSSGLVELALYYAQEQLKQGGSFVVKIFQGGDQQIHLNNLRKCFKTARAFKPEACR 184

Query: 213 AESVEMFLLAKGFR 226
           + S E +L+   F+
Sbjct: 185 SSSFETYLIGLDFK 198


>gi|146087128|ref|XP_001465733.1| ribosomal RNA methyltransferase-like protein [Leishmania infantum
           JPCM5]
 gi|134069833|emb|CAM68159.1| ribosomal RNA methyltransferase-like protein [Leishmania infantum
           JPCM5]
 gi|322499182|emb|CBZ34253.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 285

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 31/230 (13%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPG 79
            QG+SR W+ R   DP+V +A+ +G+ ARSAYKL  I+++  +         +DLG SPG
Sbjct: 8   RQGASRQWMQRQSQDPFVAKARQDGYVARSAYKLTHIDDRFHLFDRQHTRIAIDLGCSPG 67

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGG---- 134
            W QV     G       ++ ID+L ++  I      + DF D+ + E + + +      
Sbjct: 68  GWCQVIRERAGDRCF---LLGIDLLPIKAQIPNAVIVQGDFTDVTTQEKLVKCLAHHSAT 124

Query: 135 -------------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                                D+V SDM    +G  + D  R   L   A      +L I
Sbjct: 125 LGRGDATTAVASPSSSCFTKVDVVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRI 183

Query: 176 GGDFLVKTFQGG-TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           GG F+ K         ++ C L + F  V   KP ASR  S E FL+A  
Sbjct: 184 GGHFVCKVLGSRAAYEELWCRLSRLFLTVHACKPPASRMHSDEAFLVALD 233


>gi|325972772|ref|YP_004248963.1| ribosomal RNA large subunit methyltransferase E [Spirochaeta sp.
           Buddy]
 gi|324028010|gb|ADY14769.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta sp.
           Buddy]
          Length = 208

 Score =  178 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            R   D Y +RA  EG+ ARS YKL ++ +   +++S   ++D+G++PGSW+        
Sbjct: 5   RRDRADSYTKRAHKEGYPARSVYKLEELQQSFNLIKSGDTVLDVGAAPGSWTLYTHNELI 64

Query: 91  SNANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                   V ++ L + P+   V  +  D    +    +     G  D+++SD A  T+G
Sbjct: 65  KGKGTIIAVDLNPLSLNPVPVTVTSYVGDAFGKEMRNTLISH--GPYDVIISDAAPMTMG 122

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           +R +D  R+ +L E   + A + L + G+ +VK FQGG   ++L L++  F KV   KP 
Sbjct: 123 NRSVDTSRSENLAEQVIYLAKDHLKVHGNLVVKIFQGGGQVEMLKLMRTLFVKVKPFKPK 182

Query: 210 ASRAESVEMFLLAKG 224
           A R +S E++L+   
Sbjct: 183 ACRDDSFEIYLVGMD 197


>gi|326435959|gb|EGD81529.1| tRNA 2'-O-ribose methyltransferase [Salpingoeca sp. ATCC 50818]
          Length = 216

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA-ARIT 89
           ++   D Y + A+ +GWRARSA+KLLQ++ +  +    +++VDL ++PGSWSQV   ++ 
Sbjct: 5   SKDRRDVYYRLAKEQGWRARSAFKLLQLDTQFDLFSGVKKVVDLCAAPGSWSQVLQRKLK 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI-RQAIGGNPDLVLSDMAYPTI 148
                + +VVA+D+  M P+ G+   + D     +   I     G   DLV+ D A    
Sbjct: 65  PQEDEDVKVVAVDLQAMAPLDGIIQMQGDITKESTATAIVDHFEGEKADLVICDGAPDVT 124

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   ID      L  AA      +L  GG F+ K  +   T  +
Sbjct: 125 GLHDIDEYVQAQLLLAALNITTHVLKPGGTFVAKACEMKRTTAL 168


>gi|323304989|gb|EGA58743.1| Mrm2p [Saccharomyces cerevisiae FostersB]
          Length = 320

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 80/292 (27%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---RRIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   N   +RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRV-------------VAIDIL--------------- 104
           DLG +PG+WSQVA + +  N+    V             +  +IL               
Sbjct: 78  DLGYAPGAWSQVARQRSXPNSMILGVDILPCEPPHGVNSIQANILAKRTHDLIRLFFSKH 137

Query: 105 ----------------------DMEPILGVKFFKFDFLDLDSWEF------IRQAIGGNP 136
                                 ++  +   + ++  F   D +E       + +      
Sbjct: 138 FQLNRHDDLHKDHGYFQNMLEEELTHVKDTELYREIFTSDDIYETPNTNSTLIEREKFPV 197

Query: 137 DLVLSDM---------------------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+++SDM                        T G    DH +++ LC+AA   A+++L  
Sbjct: 198 DVIISDMYEPWPQTTGFWNNITNQAYFRMANTSGVSIRDHYQSIDLCDAALVTAIDLLRP 257

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            G F+ K + G   N     ++  F  V   KP ASR ES E + +    ++
Sbjct: 258 LGSFVCKLYTGEEENLFKKRMQAVFTNVHKFKPDASRDESKETYYIGLKKKR 309


>gi|72392565|ref|XP_847083.1| ribosomal RNA methyltransferase [Trypanosoma brucei TREU927]
 gi|62175581|gb|AAX69714.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei]
 gi|70803113|gb|AAZ13017.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 255

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 12/210 (5%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +        +VD+G SPGSW QV
Sbjct: 14  RQWMQQQSRDPFVLEARRRGYVARSAFKLLEMDDKFTLFSRGNTRVVVDIGCSPGSWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDM-EPILGVKFFKFDFLDLDSWEFIRQAI-----GGNPDL 138
                G       V  +D+L +   + G    + DF +    E +   +      G  D+
Sbjct: 74  IRERCGDKCA---VFGVDVLRVASTVTGAVCIQGDFTNPAVREELLARMVTVRAAGVVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLK 197
           V SDM          D  +   L  +A  FALE L  GG+F+ K     T   ++     
Sbjct: 131 VTSDMCLNRGTGSTSDRQKQEELNRSALAFALEQLVPGGNFVCKVLGSPTAYEELRRDTC 190

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F +    KP +SR  S E F++ +G R+
Sbjct: 191 RWFVRTDICKPSSSRLTSDEAFMVCRGKRE 220


>gi|6321302|ref|NP_011379.1| Mrm2p [Saccharomyces cerevisiae S288c]
 gi|1723920|sp|P53123|MRM2_YEAST RecName: Full=Ribosomal RNA methyltransferase MRM2, mitochondrial;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase;
           Flags: Precursor
 gi|1246842|emb|CAA63360.1| G2830 [Saccharomyces cerevisiae]
 gi|1322708|emb|CAA96847.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|45270890|gb|AAS56826.1| YGL136C [Saccharomyces cerevisiae]
 gi|190407085|gb|EDV10352.1| 2'O-ribose methyltransferase [Saccharomyces cerevisiae RM11-1a]
 gi|256272222|gb|EEU07213.1| Mrm2p [Saccharomyces cerevisiae JAY291]
 gi|259146373|emb|CAY79630.1| Mrm2p [Saccharomyces cerevisiae EC1118]
 gi|285812074|tpg|DAA07974.1| TPA: Mrm2p [Saccharomyces cerevisiae S288c]
 gi|323309163|gb|EGA62390.1| Mrm2p [Saccharomyces cerevisiae FostersO]
 gi|323333646|gb|EGA75039.1| Mrm2p [Saccharomyces cerevisiae AWRI796]
 gi|323337562|gb|EGA78807.1| Mrm2p [Saccharomyces cerevisiae Vin13]
 gi|323348708|gb|EGA82950.1| Mrm2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355077|gb|EGA86907.1| Mrm2p [Saccharomyces cerevisiae VL3]
          Length = 320

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 80/292 (27%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---RRIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   N   +RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRV-------------VAIDIL--------------- 104
           DLG +PG+WSQVA + +  N+    V             +  +IL               
Sbjct: 78  DLGYAPGAWSQVARQRSSPNSMILGVDILPCEPPHGVNSIQANILAKRTHDLIRLFFSKH 137

Query: 105 ----------------------DMEPILGVKFFKFDFLDLDSWEF------IRQAIGGNP 136
                                 ++  +   + ++  F   D +E       + +      
Sbjct: 138 FQLNRHDDLHKDHGYFQNMLEEELTHVKDTELYREIFTSDDIYETPNTNSTLIEREKFPV 197

Query: 137 DLVLSDM---------------------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+++SDM                        T G    DH +++ LC+AA   A+++L  
Sbjct: 198 DVIISDMYEPWPQTTGFWNNITNQAYFRMANTSGVSIRDHYQSIDLCDAALVTAIDLLRP 257

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            G F+ K + G   N     ++  F  V   KP ASR ES E + +    ++
Sbjct: 258 LGSFVCKLYTGEEENLFKKRMQAVFTNVHKFKPDASRDESKETYYIGLKKKR 309


>gi|321248436|ref|XP_003191127.1| cell division protein [Cryptococcus gattii WM276]
 gi|317457594|gb|ADV19340.1| cell division protein, putative [Cryptococcus gattii WM276]
          Length = 255

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 115/248 (46%), Gaps = 50/248 (20%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRAR---------------SAYKLLQINEKHQIL 65
               SS  WL R   DPYV++        R               S++KL+ + + H IL
Sbjct: 9   KSSSSSNRWLARQSRDPYVRQ--------RVGTPSSSSQPSYRSRSSFKLVSLAKSHPIL 60

Query: 66  -QSNRRIVDLGSSPGSWSQVAARITGSNAN---NTRVVAIDILDMEPILGVKFFKFDFLD 121
            +  + +VDLG++PG WSQVAA + G +       RV AIDIL M+PI  V+  + DFL 
Sbjct: 61  SRETKSVVDLGAAPGGWSQVAAHLLGVDKKLTSKPRVWAIDILPMDPIPAVRTLQGDFLS 120

Query: 122 LDSWEFIRQAIG-----GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-- 174
               E ++  +G     G  D VLSDM  P  G R  D   ++ LC AAT FA  +L   
Sbjct: 121 SSVRETLQSLVGTPESGGGVDTVLSDMMAPMTGVRTRDVGLSLELCAAATAFARGVLKQA 180

Query: 175 ---------------IGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKPVASRAESVEM 218
                           GG+ ++K F     ++     L + F KV+  KP  SR+ES E 
Sbjct: 181 SKEDEVKIIKGKKVWPGGNLVMKFFAHPDLDEFRRLELDQWFGKVVVEKPKESRSESSEA 240

Query: 219 FLLAKGFR 226
           + +  GF+
Sbjct: 241 YWVCLGFK 248


>gi|322827301|gb|EFZ31545.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 253

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +   N  R +VD+G SPG W QV
Sbjct: 14  RQWMEKQARDPFVLEARRRGYVARSAFKLLEMDDKFGLFARNHTRVVVDIGCSPGGWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFI-----RQAIGGNPDL 138
           A    G       V   D+L + P + G    + DF D+   + +          G  D+
Sbjct: 74  ARERCGDRCALFGV---DLLHVSPTVTGAVCIQGDFTDMAIQQQLLLRMENVHANGLVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLK 197
           V+SDM          D  + M L   A  FA   L  GG+F+ K     T   ++   L+
Sbjct: 131 VMSDMCLNRGSGGTDDRQKQMQLNMEALAFATSQLRTGGNFVCKVLGTPTAFEELRGELQ 190

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F +    KP +SR  S E F++    R+
Sbjct: 191 RWFVRSTLCKPFSSRRGSDEAFMVCLAKRE 220


>gi|151943675|gb|EDN61985.1| 2'O-ribose methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 320

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 80/292 (27%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---RRIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   N   +RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRV-------------VAIDIL--------------- 104
           DLG +PG+WSQVA + +  N+    V             +  +IL               
Sbjct: 78  DLGYAPGAWSQVARQRSSPNSMILGVDILPCEPPHGVNSIQANILAKRTHDLIRLFFSKH 137

Query: 105 ----------------------DMEPILGVKFFKFDFLDLDSWEF------IRQAIGGNP 136
                                 ++  +   + ++  F   D +E       + +      
Sbjct: 138 FQLNRHDDLHKDHGYFQNMLEEELTHVKDTELYREIFTSDDIYETPNTNSTLIEREKFPV 197

Query: 137 DLVLSDM---------------------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           D+++SDM                        T G    DH +++ LC+AA   A+++L  
Sbjct: 198 DVIISDMYEPWPQTTGFWNNITNQAYFRMANTSGVSIRDHYQSIDLCDAALVTAIDLLRP 257

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            G F+ K + G   N     ++  F  V   KP ASR ES E + +    ++
Sbjct: 258 LGSFVCKLYTGEEENLFKKRMQAVFTNVHKFKPDASRDESKETYYIGLKKKR 309


>gi|124506721|ref|XP_001351958.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|23504986|emb|CAD51769.1| ribosomal RNA methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 507

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 110/295 (37%), Gaps = 99/295 (33%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-------------------- 69
           L++   D Y ++A+  G+RARS++KL+QINEK  IL+  +                    
Sbjct: 4   LSKDRRDIYYRKAKESGYRARSSFKLIQINEKFGILKLFKPDIYNCNNEKDLINIYNEHY 63

Query: 70  --RIVDLGSSPGSWSQVAA----------------------------------------- 86
              IVDL ++PGSWSQV                                           
Sbjct: 64  CYNIVDLCAAPGSWSQVLKNICLYNYYQILYMINKYNNNENIKNIQHEEFLNKFSLYINY 123

Query: 87  -----------RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
                      +I  SN     +VA+D+ ++  +  VK  + D   + + + I + +   
Sbjct: 124 NEELENKIKNLKIKCSNIKEPNIVAVDLQEIGNMNYVKIIQGDITKMSTIDKILKCMNNK 183

Query: 136 -------------------------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
                                       V+SD A    G   ID      L  ++     
Sbjct: 184 INSDEENVNVFYNMEQQKKENNFSYAHTVVSDGAPDITGMNDIDEFIQSQLILSSLKVCC 243

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +L +GG+F+ K F+G  T  ++  L K FQ+V   KP +SR +S+E FL+   F
Sbjct: 244 SVLKVGGNFISKIFRGEHTGLLILHLNKFFQRVYICKPQSSRNKSLESFLVCLNF 298


>gi|71403252|ref|XP_804446.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70867422|gb|EAN82595.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 296

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 65/261 (24%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAA- 86
           ++   D Y ++A+ EG+RARSAYKLLQ++E+  IL  +     +VDL ++PGSWSQ+ A 
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQLHEEFNILNRDDIQTGVVDLCAAPGSWSQLLAR 64

Query: 87  --------RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----- 133
                   R    ++   R+VA+D+ +M PI GV+  + D     +   I + +      
Sbjct: 65  HLREEVGGRTEKRSSGAPRIVAVDLQEMMPIEGVQLLQGDITSEATAREIIRLLNIKEDT 124

Query: 134 ------------------------------------------------GNPDLVLSDMAY 145
                                                              DLV+ D A 
Sbjct: 125 ASVNDAYVDSEEDKFAIQTDKGGRSTARRPSLAPGGRKSYSDHTNSCEKKADLVVCDGAP 184

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  AA      +L  GG F+ K F+G  T  ++   +  F+ VI 
Sbjct: 185 DVTGMHELDEYLQHHLLLAALNITTFVLRCGGTFVTKIFRGPNTPFLVAKSEVFFRHVII 244

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S+E F++ + ++
Sbjct: 245 AKPRSSRNASMEAFMVCQDYQ 265


>gi|71665009|ref|XP_819479.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884782|gb|EAN97628.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 253

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +   N  R +VD+G SPG W QV
Sbjct: 14  RQWMEKQARDPFVLEARRRGYVARSAFKLLEMDDKFGLFARNHTRVVVDIGCSPGGWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFI-----RQAIGGNPDL 138
           A    G       V   D+L + P + G    + DF D+   + +          G  D+
Sbjct: 74  ARERCGDRCALFGV---DLLHVSPAVTGAVCIQGDFTDMAIQQQLLSRMENVHANGLVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLK 197
           V+SDM          D  + M L   A  FA   L  GG+F+ K     T   ++   L+
Sbjct: 131 VMSDMCLNRGSGGTDDRQKQMQLNMEALAFATSQLRTGGNFVCKVLGTPTAFEELRGELQ 190

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F +    KP +SR  S E F++    R+
Sbjct: 191 RWFVRSTLCKPFSSRRGSDEAFMVCLAKRE 220


>gi|39979231|emb|CAE85601.1| probable tRNA 2'-O-ribose methyltransferase [Neurospora crassa]
          Length = 318

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR-IT 89
           ++   D Y + A+ +GWRARSA+KLLQ++E+  + ++  R+VDL ++PGSWSQV +R  T
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEEFNLFENVTRVVDLCAAPGSWSQVLSREST 64

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-------------P 136
            +     ++V+ID+  + P+ G+   + D     +   + +A+  +              
Sbjct: 65  PAPREQVKIVSIDLQPISPLPGIITLRADITHPATVPLLLKALDPDFDPSTMNPQASHPV 124

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           DLV+SD A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   L
Sbjct: 125 DLVISDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQL 184

Query: 197 KKHFQK 202
           K  F+K
Sbjct: 185 KVFFEK 190


>gi|323456843|gb|EGB12709.1| hypothetical protein AURANDRAFT_52052 [Aureococcus anophagefferens]
          Length = 947

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 21/210 (10%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV-DLGSSPGSWSQVAARITGSN 92
            ND +   A+ +G+R+R+A+KL  IN++  I+ +  R+V DL ++PG W+QV      + 
Sbjct: 13  RNDKWYVLAKEQGYRSRAAFKLAHINKEFDIIGAKTRVVLDLCAAPGGWAQV---AAKAA 69

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----------------GGNP 136
                V+A+D+L + PI  V+    D     + + +++                  G + 
Sbjct: 70  GRGAAVIAVDLLPIRPIPNVRTIVGDITMDTTHQHVKREAREALAKFRDDDGEGRAGRHV 129

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM-LNIGGDFLVKTFQGGTTNDILCL 195
           D+VL D A         D      +   A    +E  L  GG F+ K ++G   N +   
Sbjct: 130 DVVLCDGAPNVGAAYNKDAFVQNEIALLALKCGVECGLRRGGSFVTKVYRGQDYNALTWA 189

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             + F++V   KP +SRA+S E+F++  G+
Sbjct: 190 FGRLFERVRATKPASSRAQSAEIFVVCSGY 219


>gi|108757449|ref|YP_631182.1| ribosomal RNA large subunit methyltransferase J [Myxococcus xanthus
           DK 1622]
 gi|123247821|sp|Q1D841|RLME_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|108461329|gb|ABF86514.1| ribosomal RNA large subunit methyltransferase J [Myxococcus xanthus
           DK 1622]
          Length = 213

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 5/194 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y Q+A+ EG RARSA+K+ ++ ++  +++    ++DLG++PG + Q+ A   G    
Sbjct: 15  KDHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILADAVGPKG- 73

Query: 95  NTRVVAIDILDMEPI--LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
             RV+ +DI+ + P     V+    D L  D    + +   G  D V+SDMA  T G + 
Sbjct: 74  --RVIGVDIVAIRPFSQPFVQTAVLDVLADDFDAKLTELHAGPFDAVISDMAPKTSGIKA 131

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R++ L   A   A      G  F+ K F G    D    ++  F++V  V+P A+R
Sbjct: 132 TDEARSLRLAGKALELAAARGRPGSSFVAKVFMGRDFEDFRNQIRALFEEVKVVRPEATR 191

Query: 213 AESVEMFLLAKGFR 226
             S+E++L+    R
Sbjct: 192 GASMEVYLVGLRRR 205


>gi|157869652|ref|XP_001683377.1| ribosomal RNA methyltransferase-like protein [Leishmania major]
 gi|68126442|emb|CAJ04191.1| ribosomal RNA methyltransferase-like protein [Leishmania major
           strain Friedlin]
          Length = 285

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 31/230 (13%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPG 79
            QG+SR W+ R   DP+V +A+ +G+ ARSAYKL  I+++  +         +DLG SPG
Sbjct: 8   RQGTSRQWMQRQSQDPFVTKARQDGYVARSAYKLTHIDDRFHLFDRQHTRIAIDLGCSPG 67

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGG---- 134
            W QV     G       ++ +D+L ++  I      + DF D+ + E + + +      
Sbjct: 68  GWCQVIRERAGDRCF---LLGVDLLPIKAQIPDAVIVQGDFTDVATQEKLVKYLAHHSAT 124

Query: 135 -------------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                                D+V SDM    +G  + D  R   L   A      +L +
Sbjct: 125 LGRGDATTAVAASSPSCFTKVDVVTSDMCPNRMGGSQ-DRQRIAQLNLQAINVCAPLLRV 183

Query: 176 GGDFLVKTFQGG-TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           GG F  K         ++ C L + F  V   KP ASR  S E FL+A  
Sbjct: 184 GGHFACKVLGSRAAYEELWCRLSRLFLTVHACKPPASRMHSDEAFLVALD 233


>gi|71006594|ref|XP_757963.1| hypothetical protein UM01816.1 [Ustilago maydis 521]
 gi|46097464|gb|EAK82697.1| hypothetical protein UM01816.1 [Ustilago maydis 521]
          Length = 346

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 99/268 (36%), Gaps = 73/268 (27%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---------------------- 68
            +   D Y ++ + EG+RARSAYKLL +NE++  L                         
Sbjct: 5   TKDKRDIYYRQGKSEGYRARSAYKLLHLNEQYGFLGGAEDYALDAGAASTCASSSDSANA 64

Query: 69  ------------RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
                        R+VDL ++PGSWSQV +R   S   +  V A+D+  M P+ GV    
Sbjct: 65  PKTTSEKRFQTPTRVVDLCAAPGSWSQVLSRRLASVPGSHLV-AVDLQAMAPLPGVTQII 123

Query: 117 FDFLDLDSWEFIRQAI-----------------GGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            D     + + +  A+                      L++ D A    G   +D     
Sbjct: 124 GDITTPATADAVSTALSDGPLSNSTCVKGKGKGKARAQLIVCDGAPDVTGLHDLDEYLQS 183

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTN---------------------DILCLLKK 198
            L  AAT     +L IGG F+ K F                            +   L+ 
Sbjct: 184 QLLLAATQITFRLLEIGGTFVAKIFTQHPQAGLGASLGNMDLKAARPATSGALLADQLRT 243

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F +V   KP +SR  SVE FL+  GF+
Sbjct: 244 FFDRVDIAKPRSSRLGSVEHFLVCLGFK 271


>gi|71656457|ref|XP_816775.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70881926|gb|EAN94924.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 253

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +   N  R +VD+G SPG W QV
Sbjct: 14  RQWMEKQARDPFVLEARRRGYVARSAFKLLEMDDKFGLFARNHTRVVVDIGCSPGGWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFI-----RQAIGGNPDL 138
           A    G       V   D+L + P + G    + DF D+   + +          G  D+
Sbjct: 74  ARERCGDRCALFGV---DLLHVSPTVTGAVCIQGDFTDMAIQQQLLSRMENVHANGLVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLK 197
           V+SDM          D  + M L   A  FA   L  GG+F+ K     T   ++   L+
Sbjct: 131 VMSDMCLNRGSGGTDDRQKQMQLNMEALAFATSQLRTGGNFVCKVLGTPTAFEELRGELQ 190

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F +    KP +SR  S E F++    R+
Sbjct: 191 RWFVRSSLCKPFSSRRGSDEAFMVCLAKRE 220


>gi|196011812|ref|XP_002115769.1| hypothetical protein TRIADDRAFT_59807 [Trichoplax adhaerens]
 gi|190581545|gb|EDV21621.1| hypothetical protein TRIADDRAFT_59807 [Trichoplax adhaerens]
          Length = 807

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           + + A+  G+RARSA+KL+Q+N K Q L+++R +VDL ++PG W QVA+R       ++ 
Sbjct: 15  FYKLAKETGYRARSAFKLIQLNRKFQFLETSRVLVDLCAAPGGWLQVASRFM---PISSL 71

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHL 156
           +V +D++ ++PI  V     D       + I++ +     D VL D A         D  
Sbjct: 72  IVGVDLVTIKPIPNVITLTGDITTDACKQAIKKELHTWKADSVLHDGAPNVGQAWVQDAF 131

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               L  +A   A ++L  GG F+ K F+      ++ + ++ F+KV   KP 
Sbjct: 132 SQAQLTLSALRLACQLLKRGGCFITKVFRSKDYYSLMWVFQQLFKKVHATKPQ 184


>gi|315187256|gb|EFU21012.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Spirochaeta thermophila
           DSM 6578]
          Length = 194

 Score =  175 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 7/194 (3%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +D Y ++A+ EG+ ARS YKL++I  K++++    R++DLG++PGSWS+      G    
Sbjct: 5   DDYYTRKARREGYPARSVYKLMEIQRKYRVVSRGDRVLDLGAAPGSWSKYLLSCVGEKG- 63

Query: 95  NTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
              VVA+D+L   +     + F++ DF   +  E I   +     +++SD A  T G+R 
Sbjct: 64  --LVVAVDLLPLVIGSHERLVFYQGDFTSDEVQERID--VHAPFQVIVSDAAPSTSGNRG 119

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R+ +L E     A   L  GG+ + K FQG    +I   +++ +++    +P A+R
Sbjct: 120 LDTARSEALVERILSLAGRWLVPGGNLVAKLFQGSGAQEIFRAVREGWERAYFFRPQATR 179

Query: 213 AESVEMFLLAKGFR 226
            +S E+F++  G R
Sbjct: 180 RQSFEVFVVGVGKR 193


>gi|224532294|ref|ZP_03672926.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           valaisiana VS116]
 gi|224511759|gb|EEF82165.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           valaisiana VS116]
          Length = 192

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G++PGS+SQ A +      
Sbjct: 4   LDDEYSQKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGAAPGSFSQYAYKKLKK-- 60

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+  + +    F K D    D+   I     G   LV+SD+A  T G+R
Sbjct: 61  --GILVSVDINDIGLKYVNNFYFVKGDIFLEDTVSKINMF--GPYSLVISDVAPRTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ L+K FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLIKVFQGGDEMQIFKRFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|302336841|ref|YP_003802047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Spirochaeta smaragdinae
           DSM 11293]
 gi|301634026|gb|ADK79453.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Spirochaeta smaragdinae
           DSM 11293]
          Length = 203

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 4/198 (2%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            R   D Y Q A+ EG+ ARS YKL +I ++  ++ +   I+D+G++PGSWS   +R+  
Sbjct: 5   KRATADYYSQLAKKEGYPARSIYKLEEIEKRFGVINTELPILDVGAAPGSWSLFISRLIK 64

Query: 91  SNANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
           +      +V++D+ +M      G+     D    D+++ IR    G    ++SD A  T 
Sbjct: 65  AKGLQPTIVSVDLKEMTVSKKSGITVITGDAFAGDAYQSIRGM--GPYGTIVSDAAPATT 122

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G+R +D  R+ SL  +    A E+L  GG+ +VK FQGG   +++ +++  F ++  +KP
Sbjct: 123 GNRIVDTGRSFSLASSVITLAEELLAPGGNLVVKIFQGGDEQELMEMVRSRFSQLKTLKP 182

Query: 209 VASRAESVEMFLLAKGFR 226
            A R +S E +L+    +
Sbjct: 183 KACRKDSFETYLIGLRKK 200


>gi|310822375|ref|YP_003954733.1| ribosomal RNA large subunit methyltransferase j [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395447|gb|ADO72906.1| Ribosomal RNA large subunit methyltransferase J [Stigmatella
           aurantiaca DW4/3-1]
          Length = 215

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 5/194 (2%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y Q+A+ EG RARSA+K+ +I  +  +++    ++DLG++PG + Q+ A   G    
Sbjct: 15  KDHYFQKAKQEGLRARSAFKVDEILRRFPVVKKGGVVLDLGAAPGGFLQILADTVG---L 71

Query: 95  NTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
           + RV+ +DI+ + P     V     D L  D    +R    G  D V+SDMA  T G + 
Sbjct: 72  SGRVIGVDIVAIRPFPQKHVTTAVLDVLADDFDARLRALYEGPLDAVISDMAPKTSGIKA 131

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
            D  R++ L   A   A+E    G  F+ K F GG        ++  + +V  V+P A+R
Sbjct: 132 TDEARSLRLAGKALEVAVERGRPGSSFVAKLFMGGDFEAFRDQVRASYDEVKVVRPEATR 191

Query: 213 AESVEMFLLAKGFR 226
             S+E++L+    +
Sbjct: 192 GASMEVYLVGLRLK 205


>gi|226469918|emb|CAX70240.1| FtsJ homolog 1 [Schistosoma japonicum]
          Length = 189

 Score =  174 bits (441), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL         R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 86  ARITGS-----NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLV 139
           ++         +    ++VA+D+  M PI GV   + D    D+ + I +   G    LV
Sbjct: 65  SKRLWESKSPDDRKFVKIVAVDLQAMAPIPGVIQIQGDITSQDTAQQIIKHFSGKLAQLV 124

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           + D A    G   +D      L  AA      +L +GG F+ K 
Sbjct: 125 VCDGAPDVTGLHDLDEYVQSHLILAALTICSRVLELGGTFVAKV 168


>gi|241997876|ref|XP_002433581.1| cell division protein FtsJ, putative [Ixodes scapularis]
 gi|215495340|gb|EEC04981.1| cell division protein FtsJ, putative [Ixodes scapularis]
          Length = 274

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +   ++    ++ VDL ++PGSWSQV +R    + +  ++VA+D+  M P+ GV   + D
Sbjct: 1   DTTFELCPGVKKAVDLCAAPGSWSQVLSRKLRYDYD-VKIVAVDLQAMAPLPGVIQLQGD 59

Query: 119 FLDLDS-WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             ++ +  + I    G   DLV+ D A    G   ID      L  +A      +L  GG
Sbjct: 60  ITEISTARKIINHFEGEKADLVVCDGAPDVTGLHDIDEYIQAELLLSALNITTHILKDGG 119

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK------GFR 226
            ++ K F+G  T  +   LK  F+ V+  KP +SR  S+E F++ +      G++
Sbjct: 120 TYVAKIFRGKDTTLLYAQLKLFFKHVVVAKPRSSRNSSIESFVVCQVYSPPEGYK 174


>gi|58697162|ref|ZP_00372584.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536531|gb|EAL59899.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 168

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 105/169 (62%), Gaps = 9/169 (5%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           ++ K ++ Q  ++I+DLG+SPG W QVA++   +      VVA+D+  M  I GV+F + 
Sbjct: 1   MDNKFKLFQEGQKIIDLGASPGGWLQVASQKGAN------VVALDVKPMNAINGVEFIQC 54

Query: 118 DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           D ++   +E +R+       D++LSDMA  + G + +DH+R M LCEAA  FA   L+ G
Sbjct: 55  DIINE--FEILREKFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLSHG 112

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G F+VK FQG +  D    LKK F+ V + KP +SR+ES EM+L++ GF
Sbjct: 113 GTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSRSESTEMYLVSLGF 161


>gi|156097180|ref|XP_001614623.1| ribosomal RNA methyltransferase [Plasmodium vivax SaI-1]
 gi|148803497|gb|EDL44896.1| ribosomal RNA methyltransferase, putative [Plasmodium vivax]
          Length = 526

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 105/294 (35%), Gaps = 98/294 (33%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-------------------- 69
           L++   D Y ++A+  G+RARS++KL+QINEK  I +                       
Sbjct: 4   LSKDRRDIYYRKAKENGYRARSSFKLIQINEKFGIFKLFDPQRCGEKEKDKIGSIYNENF 63

Query: 70  --RIVDLGSSPGSWSQVAARITGSNA---------------------------------- 93
              +VDL ++PGSWSQV   I   N                                   
Sbjct: 64  CYNVVDLCAAPGSWSQVLKNICLYNYYQMLHWESKNEGTPPNCVEHEKFLNDFSLYINFN 123

Query: 94  ----------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--- 134
                              +++A+D+ ++  +  V+  + D     +   I + +     
Sbjct: 124 DELEKRIESLAKNNFVKMPKIIAVDLQEIGNMKYVQIIQGDITKASTVHQILRCMRDGTS 183

Query: 135 -----------------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
                                      V+SD A    G   ID      L  ++      
Sbjct: 184 ADDTVLGSAQLDEQNSQRNNSPTYAHAVVSDGAPDITGMNDIDEFIQSQLILSSLKVCCS 243

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +L IGG+F+ K F+G  T  ++  L K F++V   KP +SR +S+E FL+   F
Sbjct: 244 VLKIGGNFISKIFRGEHTGLLILHLNKFFERVYVCKPQSSRNKSLESFLVCLNF 297


>gi|301060192|ref|ZP_07201059.1| ribosomal RNA large subunit methyltransferase J [delta
           proteobacterium NaphS2]
 gi|300445704|gb|EFK09602.1| ribosomal RNA large subunit methyltransferase J [delta
           proteobacterium NaphS2]
          Length = 197

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 8/201 (3%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
            S  W     +D Y ++A+ E W ARS YKL +I+ K ++++ N  ++DLG  PGSWSQ 
Sbjct: 2   KSNRW-----DDHYTEKARKEKWLARSVYKLQEIDRKFKLIRRNDTVLDLGCFPGSWSQY 56

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
                G   N   +         P     + K D   +D  E +   I    +LVLSD+A
Sbjct: 57  VIGKVGKGGNVVGIDLQKPKAFNP-PNFTYMKADIETVD-PEQLSARIEPR-NLVLSDLA 113

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
            PT G R  D  R++ L E A   A  +L   G F+ K F+     D    L   F ++ 
Sbjct: 114 PPTTGIRDTDASRSLFLAERAAEIARMLLKPKGHFVCKIFEDEALKDFKKDLGPAFGQIR 173

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             +P A+R  S E++L+A GF
Sbjct: 174 LFRPKATRKRSREVYLVATGF 194


>gi|323450630|gb|EGB06510.1| hypothetical protein AURANDRAFT_5019 [Aureococcus anophagefferens]
          Length = 180

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 3/183 (1%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
            ++A+ E +RARSAYKL+ ++++  +L +  R+VDL ++PGSW QV  R   + A    V
Sbjct: 1   YRKAKEEKFRARSAYKLMDVDDEFHLLANAARVVDLCAAPGSWCQVLRRRCPAGAA---V 57

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           VA+D+  M P+ GV   + D    ++   +  A GG  D+V+ D A    G   +D    
Sbjct: 58  VAVDLQPMAPLDGVVVLRGDITTPETAAAVVAAAGGPADVVVCDGAPEVTGVHDVDEFAH 117

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
            SL  AA   A  +L  GG F+ K F+      +   L+  F  V   KP +SR  SVE 
Sbjct: 118 ASLMAAAAALAARLLRPGGAFVAKLFRCTDAALVEAQLRCLFVDVDVRKPASSRDRSVEA 177

Query: 219 FLL 221
           F++
Sbjct: 178 FVV 180


>gi|71668248|ref|XP_821060.1| ribosomal RNA methyltransferase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886427|gb|EAN99209.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 390

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 65/261 (24%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAA- 86
           ++   D Y ++A+ EG+RARSAYKLLQ++E+  IL  +     +V L ++PGSWSQ+ A 
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQLHEEFNILNRDEIQTGVVVLCAAPGSWSQLLAR 64

Query: 87  --------RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----- 133
                   R    +    R+VA+D+ +M PI GV+  + D     +   I + +      
Sbjct: 65  HLREEVGGRTEKQSLGAPRIVAVDLQEMMPIEGVQLLQGDITSEATAREIIRLLNIKEDT 124

Query: 134 ------------------------------------------------GNPDLVLSDMAY 145
                                                              DLV+ D A 
Sbjct: 125 ASVNDAYVDSEEDKSAIQTDKGGRSTARRPSLAPGGRNSYSDHTNSCEKKADLVVCDGAP 184

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G  ++D      L  AA      +L  GG F+ K F+G  T  ++   +  F+ VI 
Sbjct: 185 DVTGMHELDEYLQHHLLLAALNITTFVLRCGGTFVTKIFRGPNTPFLVAKSEVFFRHVII 244

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR  S+E F++ + ++
Sbjct: 245 AKPRSSRNASMEAFMVCQDYQ 265


>gi|328949039|ref|YP_004366376.1| ribosomal RNA large subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
 gi|328449363|gb|AEB15079.1| Ribosomal RNA large subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
          Length = 220

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + Q+A  EG+ ARS YKL +I+EK  +L+ +  I+DLG++PGSW+    R    +   
Sbjct: 31  DYWSQKAFKEGYPARSVYKLQEIDEKFGMLKKSSIILDLGAAPGSWTVWLLRNIKQSGKV 90

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
             V    +        + FF+ D L  +    I++   G  DLV+ D A  T G+R ID 
Sbjct: 91  VSVDLNPLSKDVKAENLVFFQGDLLSEEIRNLIKEQ--GPYDLVVCDAAPLTTGNRTIDT 148

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
           LR+ +L E A ++A  ML  GG+F VK FQ G    +L  +++ F +    KP A R ES
Sbjct: 149 LRSKALVEMAIWYAGAMLKTGGNFCVKIFQNGDQQKLLMKMREIFTQAKGFKPEACRTES 208

Query: 216 VEMFLLAKGFR 226
            E +L+    +
Sbjct: 209 FETYLIGLNKK 219


>gi|169868142|ref|XP_001840645.1| ribosomal RNA large subunit methyltransferase J [Coprinopsis
           cinerea okayama7#130]
 gi|116498249|gb|EAU81144.1| ribosomal RNA large subunit methyltransferase J [Coprinopsis
           cinerea okayama7#130]
          Length = 266

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 114/256 (44%), Gaps = 49/256 (19%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQ--LEGWRARSAYKLLQINEK-HQILQSNRR--IVDL 74
           R  + SSR WL R   D YV++ Q     +RARSA+KLL+IN++    L  +    +VDL
Sbjct: 9   RLAKKSSRQWLARQTKDSYVKKRQIDPAAFRARSAFKLLEINDQWDNFLSKSDVNAVVDL 68

Query: 75  GSSPGSWSQVAARITG-----------------------------SNANNTRVVAIDILD 105
           G++PG WSQV A+  G                                    ++A+D+L 
Sbjct: 69  GAAPGGWSQVVAQKLGWTSESTDSSPTHDSASTFDPLAIDDDISAPAQGRGTIIAVDLLR 128

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIG------GNPDLVLSDMAYPTIGHRKIDHLRTM 159
           M PI GV     DFL  D+   I++ +       G  D++LSDMA    G+   D   ++
Sbjct: 129 MRPIHGVHDIVADFLAPDTDRVIQELLKREGVNDGKVDVILSDMAANASGNVTRDIECSL 188

Query: 160 SLCEAATFFALEML--------NIGGDFLVKTFQGGTTNDI-LCLLKKHFQKVIHVKPVA 210
            +C+A   FA   L          GG  L+K F            L   F  V ++KP +
Sbjct: 189 EICQAVMEFAGRHLRTAEKIGRKRGGVVLMKHFAHPELQQFREEELVPKFNLVKYIKPDS 248

Query: 211 SRAESVEMFLLAKGFR 226
           SRAES E F L  G++
Sbjct: 249 SRAESREGFFLCMGWK 264


>gi|261330264|emb|CBH13248.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 255

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 12/210 (5%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPGSWSQV 84
           R W+ +   DP+V  A+  G+ ARSA+KLL++++K  +        +VD+G SPGSW QV
Sbjct: 14  RQWMQQQSRDPFVLEARRRGYVARSAFKLLEMDDKFTLFSRGNTRVVVDIGCSPGSWLQV 73

Query: 85  AARITGSNANNTRVVAIDILDM-EPILGVKFFKFDFLDLDSWEFIRQAI-----GGNPDL 138
                G       V  +D+L +   + G    + DF +    E +   +      G  D+
Sbjct: 74  IRERCGDKCA---VFGVDVLRVASTVTGAVCIQGDFTNPAVREELLARMLTVRAVGVVDV 130

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT-TNDILCLLK 197
           V SDM          D  +   L  +A  FALE L  GG+F+ K     T   D+     
Sbjct: 131 VTSDMCLNRGTGSTSDRQKQEELNRSALAFALEQLVPGGNFVCKVLGSPTAYEDLRRDTC 190

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           + F +    KP +SR  S E F++ +G R+
Sbjct: 191 RWFVRTDICKPSSSRLTSDEAFMVCRGKRE 220


>gi|195567038|ref|XP_002107082.1| GD17262 [Drosophila simulans]
 gi|194204479|gb|EDX18055.1| GD17262 [Drosophila simulans]
          Length = 204

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D + Q A+  G R+R+A+KL+Q+N K   LQ ++  +DL ++PG W QVA +   +  
Sbjct: 11  RKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLDLCAAPGGWMQVAKQ---NMP 67

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRK 152
            ++ V+ +D+  + PI G      D       + + + +     D+VL D A     +  
Sbjct: 68  VSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQSLTKELQSWKADVVLHDGAPNVGRNWL 127

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            D  + + L   A   + + L  GG F+ K F+    N +L +LK+ F+K    K
Sbjct: 128 YDAYQQICLTLNALKLSTQFLRNGGWFVTKVFRSKDYNALLWVLKQLFKKFQVQK 182


>gi|72044279|ref|XP_798087.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115977311|ref|XP_001185839.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 649

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANN----TRVVAIDILDMEPILGVKFFKFDFLD 121
           +S  ++VDL ++PGSWSQV +R      +     T++VA+D+  M P+ GV   + D   
Sbjct: 4   KSVTKVVDLCAAPGSWSQVLSRKLSRKEDGSYEGTKIVAVDLQAMAPLPGVIQLQGDITK 63

Query: 122 LDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
             +  E +    G   DLV+ D A    G   ID      L  AA      +L   G F+
Sbjct: 64  ESTANEIVSHFEGEKADLVVCDGAPDVTGLHDIDEYIQAQLLLAALNITTHVLKPQGTFV 123

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            K F+G     +   LK  F +V   KP +SR  S+E F++ + +
Sbjct: 124 AKIFRGKDVTLLYSQLKIFFPQVTIAKPRSSRNSSIEAFVVCQRY 168


>gi|241959530|ref|XP_002422484.1| 2'O-ribose methyltransferase, putative; ribosomal RNA
           methyltransferase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223645829|emb|CAX40492.1| 2'O-ribose methyltransferase, putative [Candida dubliniensis CD36]
          Length = 319

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 21/227 (9%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLG 75
           V+N+S Q   R +++   ND Y  + +   +++R+A+KL +I++K++I  +  + IVDLG
Sbjct: 68  VRNKSKQNV-RKYIDSVSNDTYANKRRQSLFKSRAAFKLEEIDKKYKIFTKKTKNIVDLG 126

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG- 134
            +PG+W+Q A           +++ +DI    P+ G  + + D ++  +   IR      
Sbjct: 127 FAPGAWTQFAVHRLEEQDQPHKILGVDINLATPVKGCHYMQGDIMNKSTHAKIRTFFEKS 186

Query: 135 ------------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                               DL++SDM     G  ++DH+  M LC AA + A   L   
Sbjct: 187 RFQESQNSQIDTNSNEEKQLDLIMSDMMVDCTGSGQVDHIGNMELCTAALYLAYSELRSE 246

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            D ++K + G         +   F+KVIH+KP AS+  S E++++ +
Sbjct: 247 KDMILKVWSGSELKLFEARMNMMFKKVIHIKPDASKDRSSELYMVGR 293


>gi|262277409|ref|ZP_06055202.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HIMB114]
 gi|262224512|gb|EEY74971.1| ribosomal RNA large subunit methyltransferase J [alpha
           proteobacterium HIMB114]
          Length = 205

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 6/196 (3%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            W+ RH ND  V +A+  G+R+R+ +KL +IN K   L  N+ I+DLG++PGSWSQ  ++
Sbjct: 15  RWIQRHHNDDLVNKARKLGYRSRAIFKLEEINNKFLFLNKNKNILDLGAAPGSWSQYLSK 74

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
                    +++AID+L+M  +  VKF   DF + D  + I +       ++   +A  T
Sbjct: 75  Q-----GFKKIIAIDVLEMNNVSNVKFILGDFTNEDIKKKIFEQFKKIDIIISD-IATNT 128

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G++K+D  +T S+C     FA +     G  L K F G    DI+   + +F K   +K
Sbjct: 129 TGNKKLDSFKTNSICLDVLDFANKNFENDGCVLAKYFNGELDKDIIEFSRNNFSKSKIIK 188

Query: 208 PVASRAESVEMFLLAK 223
           P +SR +S EM++ A+
Sbjct: 189 PKSSRKDSKEMYVFAQ 204


>gi|13541120|ref|NP_110808.1| methyltransferase involved in cell division [Thermoplasma volcanium
           GSS1]
 gi|74576058|sp|Q97C13|RLME_THEVO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|14324507|dbj|BAB59434.1| cell division protein [FtsJ] [Thermoplasma volcanium GSS1]
          Length = 197

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 106/197 (53%), Gaps = 10/197 (5%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y  +A+ E  R+R+A+KL  + +++++++    ++++GSSPG W+QV       N+
Sbjct: 5   RRDEYYWKAKKEQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVL------NS 58

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVLSDMAYPTIG 149
              ++++ID+ +ME I GV+F + D      ++ I +A+        D V+SD      G
Sbjct: 59  LARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSG 118

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
               DH  +  + +     A+  L  GG+ L+K FQG  TND + + +K+F      KP 
Sbjct: 119 IPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPP 178

Query: 210 ASRAESVEMFLLAKGFR 226
           ASR  S E++++  GF+
Sbjct: 179 ASRGSSSEIYIMFFGFK 195


>gi|307111554|gb|EFN59788.1| hypothetical protein CHLNCDRAFT_18395 [Chlorella variabilis]
          Length = 205

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 15/205 (7%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A+  G+ ARSAYKLL+I +KH+++    +I+DLG  PG+W QVA    G  +  
Sbjct: 2   DTFFKKAKASGYVARSAYKLLEIQQKHKLIPQGGQILDLGCHPGAWLQVACESLGPPSRG 61

Query: 96  TRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            R++ ID+    +    V   + D   L   EF ++      D VLSDM + T+G+   D
Sbjct: 62  GRILGIDMQRPAKCDERVTIVQADAT-LLPPEFWQEQAPDGYDAVLSDMCHFTLGNSMAD 120

Query: 155 HLRTMSLCEAATFFAL-------------EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
             +++ L   A   A               +L  GG  L+K  QG  T +    L++ F 
Sbjct: 121 AYKSLELARTAWAIATGGEAAYPNATLSRGVLRPGGTLLMKLLQGPGTQEFAAELRRDFA 180

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           KV   +P A+R+ES E+FLL    +
Sbjct: 181 KVAWHRPKATRSESKEVFLLGLKRK 205


>gi|73667119|ref|YP_303135.1| ribosomal RNA methyl transferase RrmJ/FtsJ [Ehrlichia canis str.
           Jake]
 gi|83305659|sp|Q3YRW8|RLME_EHRCJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|72394260|gb|AAZ68537.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ehrlichia canis str. Jake]
          Length = 171

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 4/171 (2%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           ++ K  I +  + ++DLGS PG WSQ AA+   S+ NN  V ++DI +M+ I  V F K 
Sbjct: 1   MDNKFSIFKKGQYVLDLGSFPGGWSQFAAQKV-SHGNNNLVFSVDIQNMDAIPNVIFIKC 59

Query: 118 DFLDLDSWEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           D  +    E +  +      D++LSDMA    G++++DH   ++LCE +    ++     
Sbjct: 60  DISNE--IEILNDKFHNKKFDVILSDMAPKACGNKQVDHANIINLCEMSLDIVIKFAREN 117

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G F+ K  QG    +    +K +F+ V + KP ASR +S E++L+  GF+K
Sbjct: 118 GTFITKILQGEYEKEFYQSMKSNFKLVKYFKPKASRKDSSEIYLVGLGFKK 168


>gi|149243225|pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
           Putative, From Plasmodium Falciparum (Pf13_0052)
          Length = 201

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 20/198 (10%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
            +R+R+AYKL++++ K+  L+ N+ I+D+G  PGSW QV    T +  N  +++ ID   
Sbjct: 1   NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKN--KIIGIDKKI 58

Query: 106 MEPILGVKFFKFDFLDL-----------------DSWEFIRQAIGGNP-DLVLSDMAYPT 147
           M+PI  V F + +                          +++ +     D++LSD A P 
Sbjct: 59  MDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPC 118

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           IG++  DHL +  L  + T F  + +NIGG ++VK + G  TN++   LK  FQ V   K
Sbjct: 119 IGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTK 178

Query: 208 PVASRAESVEMFLLAKGF 225
           P ASR ES E++L+ K F
Sbjct: 179 PKASRNESREIYLVCKNF 196


>gi|153801759|ref|ZP_01956345.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-3]
 gi|124122724|gb|EAY41467.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-3]
          Length = 152

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 4/155 (2%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  + 
Sbjct: 61  APGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEVVLNALLDRIQPDM 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            D+V+SDMA    G+  +D  R M L E A     
Sbjct: 118 VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCR 152


>gi|218461485|ref|ZP_03501576.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
           etli Kim 5]
          Length = 126

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/126 (57%), Positives = 96/126 (76%), Gaps = 2/126 (1%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EK+ IL+  RRI+DLG++PGSWSQ+AA++TGS   + RV AID L+M  + GVK  + D
Sbjct: 61  DEKYHILRGARRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMAQLPGVKILQLD 120

Query: 119 FLDLDS 124
           FLD  +
Sbjct: 121 FLDPSA 126


>gi|119953113|ref|YP_945321.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia turicatae 91E135]
 gi|119861884|gb|AAX17652.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia turicatae 91E135]
          Length = 211

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 9/192 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y +RA+ EG+ ARS YKL++I+++  +  S   I+D+G+SPGS+SQ A      N  +
Sbjct: 26  DEYSRRAKKEGYLARSVYKLIEIDKRFSLFSSG-NILDVGASPGSFSQYAY----GNLKD 80

Query: 96  TRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             +VA+D+ D++      F   K +    +  + I         L++SD A  T G+R +
Sbjct: 81  GVLVAVDLNDIDLNFTNNFYFIKGNIYIDEVCQKIETF--APYSLIISDAAPKTTGNRLV 138

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D   + +L       A  +L  GG+ L+K FQGG    +   LK  F+ V  ++P A R 
Sbjct: 139 DTSNSFNLNMRIIELASRILVKGGNLLLKVFQGGEEEQLFYKLKSCFKIVKKIRPKAVRK 198

Query: 214 ESVEMFLLAKGF 225
            S E++ L+K F
Sbjct: 199 NSFEIYFLSKDF 210


>gi|254796904|ref|YP_003081741.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           risticii str. Illinois]
 gi|254590140|gb|ACT69502.1| ribosomal RNA large subunit methyltransferase J [Neorickettsia
           risticii str. Illinois]
          Length = 186

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 5/186 (2%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           ++A+ E +R+R+AYK L+IN+K  +++    +++LGS+PG WSQV A    +     R++
Sbjct: 2   KKAKAEQYRSRAAYKFLEINKKFNLIREGSVVLELGSAPGGWSQVIA---NALNGTGRLI 58

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           A+D+ DM+PI GV+  K D  +L   E      G   D+++SD+A    G R  D + ++
Sbjct: 59  AVDLADMDPIPGVEVIKLDI-ELQRKELYEYISGVELDVIVSDLAPSASGSRVTDSISSI 117

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQG-GTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
            L E    +A   L   G  ++K  +G       +  LKK F+K+ + KP ASR  S E+
Sbjct: 118 RLAELVLEYAKSSLKKFGTVVIKILRGSEDEYRFVNSLKKKFKKIEYFKPDASRKASREI 177

Query: 219 FLLAKG 224
           +L+  G
Sbjct: 178 YLIFLG 183


>gi|257456100|ref|ZP_05621301.1| ribosomal RNA large subunit methyltransferase J [Treponema
           vincentii ATCC 35580]
 gi|257446486|gb|EEV21528.1| ribosomal RNA large subunit methyltransferase J [Treponema
           vincentii ATCC 35580]
          Length = 200

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 8/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + ++A  EG+ ARS YKL ++ +K  +      ++DLG++PGSW+    R        
Sbjct: 9   DYWSRKAFSEGYPARSVYKLEEMQKKFNLFGKTDSVLDLGAAPGSWTTFLLRFLSPEG-- 66

Query: 96  TRVVAIDILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK 152
            RV A+D+  +        + FF+ D    D    ++    G    V+ D A  T G++ 
Sbjct: 67  -RVCAVDLQPLSESIRDPRLSFFQGDLTGADMAAAVKSC--GPYRSVICDAAPATTGNKT 123

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D  R+ SL E A ++A   L   G+F VK FQGG+    L  ++K F+     KP A R
Sbjct: 124 VDTARSASLVEMALYYAETQLEAHGNFAVKIFQGGSEQQYLQQMRKMFKSARAFKPEACR 183

Query: 213 AESVEMFLLAKGFR 226
           + S E +LL   F+
Sbjct: 184 SSSFETYLLGLDFK 197


>gi|71005240|ref|XP_757286.1| hypothetical protein UM01139.1 [Ustilago maydis 521]
 gi|46096465|gb|EAK81698.1| hypothetical protein UM01139.1 [Ustilago maydis 521]
          Length = 325

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 110/254 (43%), Gaps = 57/254 (22%)

Query: 29  WLNRHINDPYVQ-------------------RAQLEGWRARSAYKLLQINEKHQILQSNR 69
           ++ R   D YV+                    A   G+ ARSA+KLLQ++++++ L+  R
Sbjct: 68  YMQRQKADVYVKQRSRPNSPGKQGNAKDGNSLATSSGYVARSAFKLLQLDDRYRFLRPGR 127

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
            +VDLG++PG WSQ     T S A   +V A+D+L +  I GV   + DFLD      +R
Sbjct: 128 VMVDLGAAPGGWSQAIIERTRS-ATTGKVFALDLLPVADIEGVTSIQGDFLDPTIQAKLR 186

Query: 130 QA-----------------IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           Q                  + G  D+V+SDM   T GH  +D   ++ LC AAT FA++ 
Sbjct: 187 QLVSDAALGGRSGRDAEPQVDGFVDVVVSDMMANTTGHPIVDTEASLELCRAATNFAIQN 246

Query: 173 LN------------------IGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASR 212
           L                        LV  +      D+     L+KHF  V   K  ASR
Sbjct: 247 LKHDIQLMQDGERRSPTSLASKASVLVMKYFMSHQADLFRRDVLEKHFHFVKAEKMDASR 306

Query: 213 AESVEMFLLAKGFR 226
            ES E F +  G +
Sbjct: 307 KESREQFWICIGLK 320


>gi|221054440|ref|XP_002258359.1| ribosomal rna methyltransferase [Plasmodium knowlesi strain H]
 gi|193808428|emb|CAQ39131.1| ribosomal rna methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 534

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 113/309 (36%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-------------------- 69
           L++   D Y ++A+  G+RARS++KL+QINEK  I +                       
Sbjct: 4   LSKDRRDIYYRKAKENGYRARSSFKLIQINEKFGIFKLFDPKNCGERDVEKIRNIYNENF 63

Query: 70  --RIVDLGSSPGSWSQVAARITGSNA---------------------------------- 93
              IVDL ++PGSWSQV   I   N                                   
Sbjct: 64  CYNIVDLCAAPGSWSQVLKNICLYNYYQMLHWVNTNEGTLSNCDEHENFLNNFSLYINFN 123

Query: 94  ----------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--- 134
                              +++A+D+ ++  +  V+  + D     + + I + +     
Sbjct: 124 DELEKRIEDLSKKEFVKKPKIIAVDLQEIGNMKYVQIIQGDITKASTVQEILRCMKEGGA 183

Query: 135 --------------------------------------NPDLVLSDMAYPTIGHRKIDHL 156
                                                     V+SD A    G   ID  
Sbjct: 184 GNGIHDDNCEDDNLEGSAKNKWTDQEDGQKAERKNVPTYAHAVVSDGAPDITGMNDIDEF 243

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
               L  ++      +L IGG+F+ K F+G  T  ++  L K F++V   KP +SR +S+
Sbjct: 244 IQSQLILSSLKVCCSVLKIGGNFISKIFRGEHTGLLILHLNKFFERVYVCKPQSSRNKSL 303

Query: 217 EMFLLAKGF 225
           E FL+   F
Sbjct: 304 ESFLVCLNF 312


>gi|301165470|emb|CBW25041.1| 23S rRNA methyltransferase [Bacteriovorax marinus SJ]
          Length = 197

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y ++A+ + + ARS YKL +I+ K +I+    ++VD G  PGSW Q  +R  G+  
Sbjct: 5   VQDHYFKKAKKDDFLARSVYKLEEIDSKFKIINKGDQVVDFGYHPGSWVQYTSRRVGAEG 64

Query: 94  NNTRVVAIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
              +V+ IDI  +      +  V  F+ D  D+D+   +        D+VLSDMA  T G
Sbjct: 65  ---KVIGIDIRPLNKKLLTLKNVTLFEKDIFDVDTTSQLGA--DNKFDVVLSDMAPNTTG 119

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            R +D  R+++L E         L   G+ ++K F        L   K  F++   +KP 
Sbjct: 120 IRSVDQDRSLNLVEKVFEVLPVFLKENGNMVIKVFDSHQAQKFLKESKGLFKQYDFLKPK 179

Query: 210 ASRAESVEMFLLAKGFR 226
           ++R+ S E F++ +G++
Sbjct: 180 STRSVSKEFFVIGRGYK 196


>gi|328953687|ref|YP_004371021.1| Ribosomal RNA large subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454011|gb|AEB09840.1| Ribosomal RNA large subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
          Length = 204

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 7/194 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           RH  D Y +RA+ E + +R+ YKL  I+ K Q+ +  + ++DLG +PGSW Q  +   G 
Sbjct: 5   RHKPDYYSRRARQESFASRAVYKLADIDRKFQLFKPGQCVLDLGCAPGSWLQYISSRIGP 64

Query: 92  NANNTRVVAID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                 VV +D   L +     ++F + D   LD    IR     + D+V+SD+A  T G
Sbjct: 65  QG---LVVGLDRQALRISSNPSIRFVQVDVAALDPGSLIR--FSASFDVVVSDLAPSTSG 119

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
            + +DH R++ L   +  +A  +L   G +LVK FQG         +K+HFQ+V  +KP 
Sbjct: 120 IKDVDHQRSLDLARLSWEYANRLLTAAGHYLVKVFQGPDFPPFAQEIKQHFQQVDILKPS 179

Query: 210 ASRAESVEMFLLAK 223
            SR+ES E++LL +
Sbjct: 180 GSRSESRELYLLGR 193


>gi|203284234|ref|YP_002221974.1| ribosomal RNA methyltransferase [Borrelia duttonii Ly]
 gi|203287772|ref|YP_002222787.1| ribosomal RNA methyltransferase [Borrelia recurrentis A1]
 gi|259494559|sp|B5RLD9|RLME_BORDL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|259494560|sp|B5RRD2|RLME_BORRA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|201083677|gb|ACH93268.1| ribosomal RNA methyltransferase [Borrelia duttonii Ly]
 gi|201084992|gb|ACH94566.1| ribosomal RNA methyltransferase [Borrelia recurrentis A1]
          Length = 193

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y Q+A+ EG+ ARS YKL++I++K  +  S   I+D+G+SPGS+SQ A     +N  N
Sbjct: 6   DEYSQKAKNEGYLARSVYKLIEIDKKFSLFSSG-NILDIGASPGSFSQYAY----ANLKN 60

Query: 96  TRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             +VA+D+ D+       F   K +    + ++ I+        L++SD A  T G+R +
Sbjct: 61  GVLVAVDLNDVNLNFTSNFYFIKGNIYLDEVYQKIKIF--SPYSLIVSDAAPSTTGNRLV 118

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D   + +L       A E L  GG+ L+K FQGG    I   LK  F+ V  V+P A R 
Sbjct: 119 DTSNSFNLNIRIFELACESLMRGGNLLIKVFQGGEEEQIFYKLKSCFRVVKKVRPKAVRK 178

Query: 214 ESVEMFLLAKGFRK 227
            S E++ LAK F K
Sbjct: 179 NSFEIYFLAKDFAK 192


>gi|154314078|ref|XP_001556364.1| hypothetical protein BC1G_04982 [Botryotinia fuckeliana B05.10]
 gi|150849128|gb|EDN24321.1| hypothetical protein BC1G_04982 [Botryotinia fuckeliana B05.10]
          Length = 385

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 98/250 (39%), Gaps = 64/250 (25%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRAR          K  +     R+VDL ++PGSWSQV +R+  
Sbjct: 5   SKDKRDAYYRLAKEQGWRAR----------KFDLFSDVTRVVDLCAAPGSWSQVLSRVLI 54

Query: 91  SNANNTR-----------------------------------------VVAIDILDMEPI 109
                 R                                         +VAID+  M P+
Sbjct: 55  KGEKFGRAAWEDKEARMRQNILEINTPSSTEEKQLSNETELKPKKDVKIVAIDLQPMSPL 114

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIG-------------GNPDLVLSDMAYPTIGHRKIDHL 156
            G+   + D     +   +  A+                 DLV+SD A    G   +D  
Sbjct: 115 QGIITLRADITHPATVPLLLSALDSSYDPKSLSQQASNPVDLVISDGAPDVTGLHDLDIY 174

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
               L  AA   AL +L  GG F+ K F+G   + +   LK  F++V+  KP +SRA SV
Sbjct: 175 VQSQLLFAALNLALCVLRPGGKFVAKIFRGRNVDLLFAQLKIFFERVVVAKPRSSRASSV 234

Query: 217 EMFLLAKGFR 226
           E F++   F+
Sbjct: 235 EAFIVCLNFQ 244


>gi|170096322|ref|XP_001879381.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645749|gb|EDR09996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 249

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 28/226 (12%)

Query: 29  WLNRHINDPYVQR--AQLEGWRARSAYKLLQINEKHQIL---QSNRRIVDLGSSPGSWSQ 83
           W+ R   DPYV++  +    +R+RSA+KLL+IN++          + +VDLG++PG WSQ
Sbjct: 20  WIARQARDPYVKKRLSDPASYRSRSAFKLLEINDQWDSFLTKPDVKAVVDLGAAPGGWSQ 79

Query: 84  V------AARITGSNANNTR--VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--- 132
           V         +  S+A   R  +VA+D+L M+PI GV   + DFL  ++   I   +   
Sbjct: 80  VPYDPLNIDDLEPSSALTGRGTIVAVDLLKMQPIHGVHAIQADFLAAETERRIHNLLSVK 139

Query: 133 ---GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI--------GGDFLV 181
                  D++LSD+A    G+   D   ++ +CEA   FA + L          GG  L+
Sbjct: 140 GNLECKADIILSDIAANASGNDVHDIESSLEICEAVFCFARQYLRSAERIGRRRGGVLLM 199

Query: 182 KTFQGGTTNDI-LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F+        +  L  +F  V ++KP +SR+ S E + L +G++
Sbjct: 200 KHFEHPLLQKFRVEKLLPNFHDVRYIKPDSSRSASREGYFLCQGWK 245


>gi|159466440|ref|XP_001691417.1| hypothetical protein CHLREDRAFT_183158 [Chlamydomonas reinhardtii]
 gi|158279389|gb|EDP05150.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 254

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 31/248 (12%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G+ S   L      R  +     W  +  +D Y + A+  G+ +R+AYKLL+I +KH+
Sbjct: 6   PAGAPS---LATGRMTRVSRPILAAWTKKVQHDHYFKEAKKAGYVSRAAYKLLEIQDKHK 62

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL-----GVKFFKFD 118
           I++    ++DLG SPG+W QVA +  G       V+ +DI  +          V+  + D
Sbjct: 63  IIKQGGTVLDLGCSPGAWLQVACQQIGPRERGGTVLGVDIQPVTVPERFCDARVRVMQAD 122

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA--------- 169
              L     + +   G  D VLSDM   T G   ++   ++ L   A   A         
Sbjct: 123 ARTL-PPSLLAEYAPGGFDTVLSDMLQFTSGVNDVE--LSLELAGTALHIATGYHFDVYG 179

Query: 170 -----------LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
                         L  GG  ++K ++G    + +  ++++F KV+ ++  ASR+ S E 
Sbjct: 180 EAYVQQVGFRHTGFLRPGGALVMKVYEGTGVTEFVRDMQRYFTKVVRMRVDASRSMSREF 239

Query: 219 FLLAKGFR 226
           + +  G +
Sbjct: 240 YAVGLGRK 247


>gi|68473115|ref|XP_719363.1| potential mitochondrial rRNA methyltransferase [Candida albicans
           SC5314]
 gi|46441176|gb|EAL00475.1| potential mitochondrial rRNA methyltransferase [Candida albicans
           SC5314]
 gi|238880388|gb|EEQ44026.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 271

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 21/227 (9%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLG 75
            +N+S Q   R +++   ND Y  + +   +++R+A+KL +I+ K++I  +  + IVDLG
Sbjct: 20  ARNKSKQNV-RKYIDSVSNDTYSNKRRQSLFKSRAAFKLQEIDSKYRIFTKRTKNIVDLG 78

Query: 76  SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135
            +PG+W+Q A         +  ++ IDI    P+ G  + + D ++  +   IR      
Sbjct: 79  FAPGAWTQFAVHRLEEQNLSHNILGIDINLATPVKGCHYMQGDIMNKSTHAKIRNFFEKQ 138

Query: 136 P-------------------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                               DL++SDM     G    DH+  M LC AA + A   L   
Sbjct: 139 RLRETQDYQTDTSSDEEKQLDLIMSDMMVDCTGTGSADHIGNMELCTAALYLAYSELKPE 198

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            D ++K + G         +   F+KVIH+KP AS+  S E++++ +
Sbjct: 199 KDMILKVWSGSELKLFETRMNIMFKKVIHIKPDASKDRSSELYMVGR 245


>gi|330038977|ref|XP_003239752.1| SAM-dependent methyltransferase [Cryptomonas paramecium]
 gi|327206677|gb|AEA38854.1| SAM-dependent methyltransferase [Cryptomonas paramecium]
          Length = 297

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 6/198 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
            +   D +   ++   +R+R+A+KL++I+ K    +    ++DL S+PGSW QV+ ++  
Sbjct: 5   RKKRCDFFYFISKKFKFRSRAAFKLIEIDNKFHFFKKAVGVLDLCSAPGSWMQVSRKL-- 62

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPT 147
               +  +V ID+  ++ I G  F   D      +     I +  G   +++L D +   
Sbjct: 63  -TQLHIPIVGIDLCKIKKIHGCVFVNGDITSYYCFNSVLKIIKNFGLTFNIILHDGSPRA 121

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
                 D  +   L   A  F  +ML   G F+ K F+    N +L  LK +F K+  +K
Sbjct: 122 EIKWLSDVYKQNKLVLYAFKFTHKMLCPNGWFVTKIFKSKYFNGLLFFLKSYFGKIFILK 181

Query: 208 PVASRAESVEMFLLAKGF 225
           P+ASR ESVE++++ K F
Sbjct: 182 PIASRKESVEIYIICKKF 199


>gi|171677887|ref|XP_001903894.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937012|emb|CAP61670.1| unnamed protein product [Podospora anserina S mat+]
          Length = 336

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 55/254 (21%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR--IVDLGSSPGSWSQVAA 86
           W  R   D +   A+++G R+R+A+KLL++ EK+ + +  R   +VDLG +PGSWSQVA 
Sbjct: 59  WKQRQSRDRFALAARVQGLRSRAAFKLLEMQEKYSLFRPRRNQIVVDLGYAPGSWSQVAL 118

Query: 87  RITGSNANNTRVVAIDILD----------------------------------------- 105
             T  +     +  +                                             
Sbjct: 119 DATAPDGKVIGIDLLPAQPPKGVSTIQGNFLSKAVQEMCKNFVLEADLKRRKMERRREWA 178

Query: 106 ----MEPILGVKFFKFDFLDLDSWEFIRQAIGGN--------PDLVLSDMAYPTIGHRKI 153
               +E   G    +  ++DL+     ++              D+VLSDM   T G    
Sbjct: 179 AKKSIEIDEGEVEERGSYIDLERRSAQQEEELEQEKGMNMRVVDVVLSDMLMNTSGISLR 238

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH  +M LC+AA  FA E L   G F+ K ++G   +++  +LKK F KV   KP++SR 
Sbjct: 239 DHAGSMELCKAALTFASETLKPDGHFVCKYYEGSGDDELKMVLKKMFAKVHREKPMSSRK 298

Query: 214 ESVEMFLLAKGFRK 227
           ES E F +A   R+
Sbjct: 299 ESREAFYVALRRRE 312


>gi|58264212|ref|XP_569262.1| cell division protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57223912|gb|AAW41955.1| cell division protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 237

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 109/220 (49%), Gaps = 34/220 (15%)

Query: 28  DWLNRHINDPYVQRAQ-------LEGWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPG 79
            WL R   DPYV++            +R+RS++KL+ + + H IL +  + +VDLG++PG
Sbjct: 16  RWLTRQSRDPYVRQRTGTSSSPSQPSYRSRSSFKLVSLAKSHPILSRETKSVVDLGAAPG 75

Query: 80  SWSQVAARITGSNANNT---RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI---- 132
            WSQVAA + G +   T   RV AIDIL M+PI  V+  + DFL     E ++  +    
Sbjct: 76  GWSQVAAHLLGVDKKPTSKPRVWAIDILPMDPIPAVQTLQGDFLSSSVRETLQSLVGTPE 135

Query: 133 -GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN----------------- 174
            GG  D VLSDM  P  G R  D   ++ LC AAT FA  +L                  
Sbjct: 136 SGGGVDTVLSDMMAPMTGVRTRDVGLSLELCAAATVFARGVLKQASKEDEVKVVKGKKVW 195

Query: 175 IGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKPVASRA 213
            GG+ ++K F     ++     L + F KV+  KP  SR+
Sbjct: 196 PGGNLVMKFFAHPDLDEFRKLELDRWFGKVVVEKPKESRS 235


>gi|167044324|gb|ABZ09003.1| putative FtsJ-like methyltransferase [uncultured marine
           crenarchaeote HF4000_APKG6B14]
          Length = 197

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 102/192 (53%), Gaps = 3/192 (1%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y + A +EG+R+RS+YKL ++++ ++I+     ++DLG +PG W+QVA ++ G+  
Sbjct: 7   RKDHYRKLASVEGYRSRSSYKLKELHKSYRIIGVGHYVLDLGCAPGGWTQVAVQLAGNKG 66

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
              +V+ +D   +E I G    K D  D    + I    G   ++V+ D++    G+  +
Sbjct: 67  ---KVMGVDTSYVEEIPGAYMLKSDICDGSVTKEILSFFGKKVNVVICDLSPQVTGNWSV 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH   +S   AA     ++L   G+ L K F G  +N+    +KK F KV   KP  SR 
Sbjct: 124 DHSTQISSNYAAAKIMDQVLKKNGNALFKVFDGEYSNEFYQYVKKKFFKVKLKKPKVSRK 183

Query: 214 ESVEMFLLAKGF 225
           +S E++ +  G+
Sbjct: 184 QSSELYCICLGY 195


>gi|187918187|ref|YP_001883750.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia hermsii DAH]
 gi|119861035|gb|AAX16830.1| 23S rRNA Um2552 2'-O-methyltransferase [Borrelia hermsii DAH]
          Length = 205

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 9/194 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y Q+A+ EG+ ARS YKL++I+++  +  S   I+D+G+SPGS+SQ A     +   N
Sbjct: 14  DKYSQKAKKEGYLARSVYKLIEIDQRFSLFSSG-NILDIGASPGSFSQYAY----NKLKN 68

Query: 96  TRVVAIDILDMEPILGVKF--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
             +VA+D+ D+       F   K +    + +E I+        L++SD A+ T G+R +
Sbjct: 69  GVLVAVDLNDINLNFTNNFYFIKGNIYIDEVFEKIKTF--APYSLIISDAAFKTTGNRLV 126

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D   + +L       A ++L  GG+ L+K FQGG    +   LK+ F+ V  ++P A R 
Sbjct: 127 DTSNSFNLNMRIVELASQILIRGGNLLLKVFQGGEEEQLFYKLKRCFKLVKKIRPKAVRK 186

Query: 214 ESVEMFLLAKGFRK 227
            S E++ L+K F K
Sbjct: 187 NSFEIYFLSKDFIK 200


>gi|257471440|ref|ZP_05635439.1| cell division protein FtsJ [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|311086120|gb|ADP66202.1| cell division protein FtsJ [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086693|gb|ADP66774.1| cell division protein FtsJ [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087790|gb|ADP67869.1| cell division protein FtsJ [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 154

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 4/156 (2%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF- 127
             ++DLG++PGSWSQ A+   G      R++A DIL + PI GV  F+ DF +  +    
Sbjct: 1   MNVIDLGAAPGSWSQYASNRIGKKG---RIIACDILPIRPITGVDIFQGDFRNKKTLNLM 57

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           +         LV+SDMA    G+  ID  R + LC+ A   +  +L+  G FL+K+FQG 
Sbjct: 58  LNTFSNITFHLVMSDMAPNITGNFSIDMPRIIELCKLALKISEHVLSKNGIFLLKSFQGE 117

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
             N++   +K  F+K+   KP  SR  S E+F+LA 
Sbjct: 118 GFNELYKEIKMLFKKIKICKPKTSRTRSREIFILAT 153


>gi|46136703|ref|XP_390043.1| hypothetical protein FG09867.1 [Gibberella zeae PH-1]
          Length = 301

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 63/240 (26%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSW 81
             S   W  R   D Y + A+++G ++R+A+KLL+++ K+++ + S + +VDLG +PGSW
Sbjct: 31  SSSGSRWKQRQGRDSYARGAKVQGLKSRAAFKLLEMDSKYKLFKGSGQTVVDLGYAPGSW 90

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--------- 132
           SQVA   T  +    RV+ ID++  +P  GV  F+ DFL  D  E ++  I         
Sbjct: 91  SQVAVEKTKPHG---RVIGIDLIPAQPPRGVATFQGDFLSPDVQEMVKNFILESHRRPPP 147

Query: 133 -----------------------------GGNPDLVLSDMAYP----------------- 146
                                            ++VLSDM+ P                 
Sbjct: 148 LQDEGDPENSTPDEAAALDRPSYLDMERHAAQDEVVLSDMSEPWDQTTGFNVNTLSNPYH 207

Query: 147 ----TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
               T G+   DH  +M LC AA  FA + L  GG F+ K +QG    D    L+  F K
Sbjct: 208 RLMNTSGNAFRDHAGSMDLCAAALQFASDTLRSGGHFVCKFYQGSEDRDFEKKLRTLFTK 267


>gi|255581527|ref|XP_002531569.1| ftsj, putative [Ricinus communis]
 gi|223528799|gb|EEF30805.1| ftsj, putative [Ricinus communis]
          Length = 228

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 30/221 (13%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQI ++H+++     ++DLG +PG+W QVA +  G   N 
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKQHKLITPGSSVLDLGCAPGAWLQVACQSLGPLKNG 67

Query: 96  TRVVAIDILDMEPILG-----VKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
             VV ID+  ++         VK    D ++L   +    ++      +VLSDM  P  G
Sbjct: 68  GSVVGIDLKKVKVPNPYCDARVKTVCADVMNLPRDQVRALSLQQKGFSVVLSDMCPPVSG 127

Query: 150 HRKIDHLRTMSLCEAATFFAL------------------------EMLNIGGDFLVKTFQ 185
               D   +M L   A   A+                         +L  GG  ++K  +
Sbjct: 128 ITTKDAALSMELGMQALDIAIGGAASAHPDDENQNDDSTSGENDNGVLQAGGHLVIKLLE 187

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                +   + K  F+K   ++P A+R+ S E++L+ +G +
Sbjct: 188 SEDIQEFTRICKPLFRKASWLRPKATRSSSREIYLICQGLK 228


>gi|15240727|ref|NP_196887.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|5821280|dbj|BAA83750.1| FtsJ [Arabidopsis thaliana]
 gi|10177649|dbj|BAB11111.1| FtsJ [Arabidopsis thaliana]
 gi|332004564|gb|AED91947.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
          Length = 224

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 30/219 (13%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQI +++++++    ++DLG +PG+W QVA +  G   + 
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLRSG 67

Query: 96  TRVVAIDILDMEPIL----GVKFFKFDFLD---LDSWEFIRQAIGGNPDLVLSDMAYPTI 148
             VV +DI  ++        V+    D L+       E   Q +G    ++LSDM +   
Sbjct: 68  GIVVGMDIKKVKVPPQCDSRVQTIAADVLNFPRQKIRELSPQQLG--FSVILSDMCHSVS 125

Query: 149 GHRKIDHLRTMSLCEAATFFAL---------------------EMLNIGGDFLVKTFQGG 187
           G    D   +  L   A   A+                      +L  GG  ++K  +  
Sbjct: 126 GITTRDAALSAELGMRALDLAVGQAAISQSPNDDDGGPNESRPGVLRHGGHLVIKLLESE 185

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              D   + K  F K   ++P A+R  S E++L+ +GFR
Sbjct: 186 DAQDFARICKPIFNKASWLRPKATRPSSREIYLICQGFR 224


>gi|308801797|ref|XP_003078212.1| elongation factor P (ISS) [Ostreococcus tauri]
 gi|116056663|emb|CAL52952.1| elongation factor P (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 17/224 (7%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           ++ ++     +S+  +     DP  + A+  G+ ARSA KL+Q++EK ++L++ R ++DL
Sbjct: 254 RRARDAEMASNSKRLI-----DPIAREAKRLGYVARSALKLVQLDEKFRLLRNKRSVLDL 308

Query: 75  GSSPGSWSQVA-ARITGSNANNTRVVAIDILDMEP-----ILGVKFFKFDFLDLDSWEFI 128
           G +PG+W QV   R         RV+ ID+ +++      +  V   +   + LD+ E  
Sbjct: 309 GCAPGAWIQVVHERTRRQGGTCARVLGIDLKEIDRGTLAGLRHVDAARASTMTLDATEAR 368

Query: 129 RQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL----EMLNIGGDFLVKT 183
              +G    D VLSDM   T G   +D   ++ L E A   A+     +L   GD +VK 
Sbjct: 369 ASDLGVETFDAVLSDMMVNTRGLASVDAAASLELAECAVDLAVVRDGGVLAARGDLVVKI 428

Query: 184 FQGGTT-NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +G  +  ++    K HF KV   KP A+R+ES E++L+A+G +
Sbjct: 429 LEGSGSVEELAKHCKPHFDKVNWFKPNATRSESREIYLVARGRK 472


>gi|297807411|ref|XP_002871589.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317426|gb|EFH47848.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 229

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 35/224 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQI +++++++    ++DLG +PG+W QVA +  G   + 
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLKSG 67

Query: 96  TRVVAIDILDMEPIL----GVKFFKFDFLD---LDSWEFIRQAIGGNPDLVLSDMAYPTI 148
             VV +DI  ++        V+    D L+       E   Q +G    ++LSDM +   
Sbjct: 68  GIVVGMDIKKVKVPPQCDSRVQTIAADVLNFPRQTIRELSPQQLG--FSVILSDMCHSVS 125

Query: 149 GHRKIDHLRTMSLCEAATFFA--------------------------LEMLNIGGDFLVK 182
           G    D   +  L   A   A                            +L  GG  ++K
Sbjct: 126 GITTRDAALSAELGMRALDLAVGQAAISQSPDDDNDGGDEVPSNESRRGVLRHGGHLVIK 185

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             +     D   + K  F K   ++P A+R+ S E++L+ +GFR
Sbjct: 186 LLESEDAQDFARICKPIFNKASWLRPKATRSSSREIYLICQGFR 229


>gi|68072251|ref|XP_678039.1| ribosomal RNA methyltransferase [Plasmodium berghei strain ANKA]
 gi|56498377|emb|CAH98756.1| ribosomal RNA methyltransferase, putative [Plasmodium berghei]
          Length = 487

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 109/310 (35%), Gaps = 114/310 (36%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKH---QILQSNR----------------- 69
           L++   D Y ++A+  G+RARS+YKL+QIN+K    ++   N+                 
Sbjct: 4   LSKDRRDIYYRKAKENGYRARSSYKLIQINDKFEIFKLFNPNKYNNSDISEIIKKYNDEY 63

Query: 70  --RIVDLGSSPGSWSQVAARITGSNA---------------------------------- 93
              IVDL ++PGSWSQV   I   N                                   
Sbjct: 64  CYNIVDLCAAPGSWSQVLKNICLYNYYNMLYFNKNNNMNNELDHEEFIKNFSLYINFNDI 123

Query: 94  ----------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-- 135
                              ++VA+D+ ++  +  +   + D   + +   I + +  N  
Sbjct: 124 LEKKIDKFLKNNNYQIKEPKLVAVDLQEIGNMNYINIIQGDITKMSTINKILKCMNENEK 183

Query: 136 ----------------------------------------PDLVLSDMAYPTIGHRKIDH 155
                                                      V+SD A    G   ID 
Sbjct: 184 DIEFSVNSPKHIYDEDSSIKYNKMKNNILNKEKENNKFVYAHAVVSDGAPDITGMNDIDE 243

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
                L  ++      +L IGG+F+ K F+G  T+ ++  L K F+K+   KP +SR +S
Sbjct: 244 FIQSQLILSSLKVCCSVLKIGGNFISKIFRGEYTSLLIFHLNKFFEKIYVCKPQSSRNKS 303

Query: 216 VEMFLLAKGF 225
           +E FL+   F
Sbjct: 304 LESFLVCLNF 313


>gi|167042175|gb|ABZ06908.1| putative FtsJ-like methyltransferase [uncultured marine
           crenarchaeote HF4000_ANIW93H17]
          Length = 197

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 3/192 (1%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             D Y + A +EG+R+RS+YKL ++++ ++I+     ++DLG +PG W+QVA ++ G+  
Sbjct: 7   RKDHYRKLASVEGYRSRSSYKLKELHKSYRIIGVGHYVLDLGCAPGGWTQVAVQLAGNKG 66

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
              +V+ +D   +E I G    K D  D    + +    G   ++V+ D++    G+  +
Sbjct: 67  ---KVMGVDTSFVEEIPGAYMLKSDICDGSVTKEVLSFFGKKVNVVICDLSPQVTGNWSV 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH   +S   AA     ++L   G+ L K F G  +N+    +KK F KV   KP  SR 
Sbjct: 124 DHSTQISSNYAAAKIMDQVLKKNGNALFKVFDGEYSNEFYQYVKKKFFKVKLKKPKVSRK 183

Query: 214 ESVEMFLLAKGF 225
           +S E++ +  G+
Sbjct: 184 QSSELYCICLGY 195


>gi|160331225|ref|XP_001712320.1| sbp1 [Hemiselmis andersenii]
 gi|159765767|gb|ABW97995.1| sbp1 [Hemiselmis andersenii]
          Length = 317

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           L +   D Y   ++   +R+R+A+KL+++N+K + L  +R ++DL ++PG W QV  ++ 
Sbjct: 3   LKKERKDLYYFLSKKYFFRSRAAFKLIELNQKFRFLDKSRGVLDLCAAPGGWLQVVQKVV 62

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYP 146
                 + ++ +D   + PI G   FK D       E    ++       D+VL D A  
Sbjct: 63  SPG---SLIIGVDAKKILPIKGCNMFKGDITSRGCLEPILKLKNWKNKRLDVVLHDGAPR 119

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           T      D L   SL   A   A+  +  GG F+ K F  G  + +L +L+  F+K+   
Sbjct: 120 TGTSWVRDALNQNSLSLNAFKLAVNCIEKGGWFVSKIFCSGNFHGLLFVLRFFFKKIKIF 179

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP ASR  S E +L+ K F
Sbjct: 180 KPRASRLTSAETYLICKDF 198


>gi|158520389|ref|YP_001528259.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans
           Hxd3]
 gi|254809550|sp|A8ZT18|RLME_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158509215|gb|ABW66182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans
           Hxd3]
          Length = 207

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 7/198 (3%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           R   D Y ++A+ E + ARS YKL +I +KH +L+    ++DLG  PGSW   AA   G 
Sbjct: 9   RKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVGR 68

Query: 92  NANNTRVVAIDILDMEP--ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
                +V  ID+  +           + D  ++D  E +   +G   D+VLSDMA  T+G
Sbjct: 69  GG---KVTGIDLKKVATHMPAQATSLQEDIYEID-REALAGTLG-PLDVVLSDMAPDTMG 123

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           ++  D  R+  L  AA   AL +L  GG F+ K FQG    + + ++K  F++    KP 
Sbjct: 124 NKFTDAARSFHLAAAALDLALFLLKPGGHFVCKVFQGEDFQNFVNMVKAEFERHKVFKPE 183

Query: 210 ASRAESVEMFLLAKGFRK 227
             R +S E +++    ++
Sbjct: 184 TCRKDSKETYVIGFSKKE 201


>gi|51598573|ref|YP_072761.1| cell division protein [Borrelia garinii PBi]
 gi|81610080|sp|Q661V2|RLME_BORGA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|51573144|gb|AAU07169.1| cell division protein [Borrelia garinii PBi]
          Length = 192

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 9/197 (4%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           H+ D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +     
Sbjct: 3   HLGDEYSQKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----K 57

Query: 93  ANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                +V++DI D+    +    F K D    D+   I +   G   LV+SD+A  T G+
Sbjct: 58  LKRGVLVSVDINDISLRYVNNFYFIKGDIFSDDTASKINKF--GPYSLVISDVAPKTTGN 115

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A
Sbjct: 116 RLVDTSNSFNLNMRIIDLSFEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKA 175

Query: 211 SRAESVEMFLLAKGFRK 227
            R  S E++ L K F K
Sbjct: 176 VRKNSFEIYFLGKSFGK 192


>gi|321264303|ref|XP_003196869.1| hypothetical protein CGB_K4110C [Cryptococcus gattii WM276]
 gi|317463346|gb|ADV25082.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 1315

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 91/245 (37%), Gaps = 54/245 (22%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++ +  G+RARSAYKLL ++E+  +    +  VDL ++PGSWSQV  +     + 
Sbjct: 11  RDVYYRKGKSAGYRARSAYKLLHLDEEFDLFSHVQTAVDLCAAPGSWSQVLGQKLKPKSK 70

Query: 95  NT----RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
           +     RVV+ D+  M P+  +   + D     +   +  A+GG   DLV+ D A    G
Sbjct: 71  HGGEGTRVVSCDLQPMAPLPNITTLQTDITLPSTIPLVLDALGGRKADLVVCDGAPDVTG 130

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT---NDILCLLKKHFQK---- 202
              +D      L  AA   +L ++  G   + K F          +   L   F      
Sbjct: 131 VHDLDAYLHSQLLLAALTLSLTLMAPGATLVFKIFLSPLDPRAEFLASQLTCFFASPLPE 190

Query: 203 ------------------------------------------VIHVKPVASRAESVEMFL 220
                                                     V   KP +SR  S E F+
Sbjct: 191 DDEDAFGQYEEFDGSVDTERQDMKEMRNEGKEGYDPQGRRGGVWVRKPRSSRQGSAEAFI 250

Query: 221 LAKGF 225
           + + F
Sbjct: 251 VCRNF 255


>gi|66824025|ref|XP_645367.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
 gi|74860452|sp|Q86AH1|RRMJL_DICDI RecName: Full=Probable ribosomal RNA methyltransferase fsjB;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
           fsjB
 gi|60473489|gb|EAL71433.1| rRNA methyltransferase [Dictyostelium discoideum AX4]
          Length = 640

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 57/252 (22%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
           DW+ R + DPYV  AQ     +R+AYK++ I+E+ Q+ +  + +VDLG++PG WS+    
Sbjct: 389 DWMKRQMTDPYVAMAQKNDLISRAAYKIINIDEQIQLFKPGQIVVDLGAAPGGWSKYIQE 448

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFD---------FLDLDSWEFIR--------- 129
                 N   V+++D      +    F   D           +L  ++ +          
Sbjct: 449 RV---TNRGLVISVDTSSNFQLDKDCFIHGDFTLTETQNKIFELTKFKSLNDLKLYKHSL 505

Query: 130 ------------------------------------QAIGGNPDLVLSDMAYPTIGHRKI 153
                                               Q      D+V+SDMA    G +++
Sbjct: 506 IHSDSKIQNLIENGGANGNGSGNGDLQKQPIDNMFKQKSACYVDVVVSDMAPSYSGLQQV 565

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DH R + L   A FFA + L  GG F+ K  +GG       LL+ +F  V  +KP ASR+
Sbjct: 566 DHSRLIDLQRLALFFAFKTLKKGGTFVCKVSRGGEEKKFFKLLESNFISVKSMKPGASRS 625

Query: 214 ESVEMFLLAKGF 225
           ES E++ + K +
Sbjct: 626 ESTEIYYIGKNY 637


>gi|302783825|ref|XP_002973685.1| hypothetical protein SELMODRAFT_99612 [Selaginella moellendorffii]
 gi|302787935|ref|XP_002975737.1| hypothetical protein SELMODRAFT_104009 [Selaginella moellendorffii]
 gi|300156738|gb|EFJ23366.1| hypothetical protein SELMODRAFT_104009 [Selaginella moellendorffii]
 gi|300158723|gb|EFJ25345.1| hypothetical protein SELMODRAFT_99612 [Selaginella moellendorffii]
          Length = 223

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 24/221 (10%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           +  H+ D + + A    + ARSA+KL++I EKH+IL+    I+DLG +PG+W QVA +  
Sbjct: 1   MASHVPDFFYKEALRLRYVARSAFKLVEIQEKHRILKPGAAILDLGCAPGAWLQVACQNL 60

Query: 90  GSNANNTRVVAIDILDMEPILG------VKFFKFDFL--DLDSWEFIRQAIGGNPDLVLS 141
           G+      VV +D   +  + G      VK    D +    ++   +   +    +++LS
Sbjct: 61  GTRDQGGVVVGVDTKKIN-VPGDHTDHRVKAIAADVMKIKPETLAAMTPEVKITYNVILS 119

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEM---------------LNIGGDFLVKTFQG 186
           DM     G    D   +  L   A   AL                 L   G  ++K  +G
Sbjct: 120 DMCPSVSGIGFKDATLSAELGSRALELALGFHPDDERDSTKKVNGLLVPSGSLVIKLLEG 179

Query: 187 GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
             +        K+F+ V  ++P ASR+ S E++L+AKG  +
Sbjct: 180 EESQGFPDYCNKYFRSVSWLRPKASRSTSREIYLIAKGRNR 220


>gi|320032551|gb|EFW14503.1| cell division protein ftsj [Coccidioides posadasii str. Silveira]
          Length = 321

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 112/285 (39%), Gaps = 78/285 (27%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS--- 77
               SS+ W  R   D Y + A L G ++R+A+KLLQIN  ++I +  + +VDLG +   
Sbjct: 28  RRFASSKQWQARQFKDIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGS 87

Query: 78  ---------------------PGSWSQVAARITGS---------------NANNTRVVAI 101
                                P    +  + I G+               N +  R +  
Sbjct: 88  WSQVAVDLTHPNGRVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFLRNPDRGRPLRE 147

Query: 102 DILDMEPILG-----VKFFKFDFLDL--DSWEFIR-----------QAIGGNPDLVLSDM 143
           ++    P        V+ F+  ++D   D  E I            +A  G  D+VLSDM
Sbjct: 148 ELCSRTPQKTWTANEVETFEPGYIDRERDVSERISREPCDEHSPQTEAGEGTVDVVLSDM 207

Query: 144 AYP---------------------TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + P                     T G    DH R+M LC AA  F+ ++L  GG F+ K
Sbjct: 208 SAPWKLTTGYWKRSLNDPYNRMMNTSGLGFRDHARSMDLCNAAVNFSYDVLKPGGHFICK 267

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +QG     +   LK  FQKV   KP +SR ES E + +    ++
Sbjct: 268 FYQGNEDQQLELRLKSLFQKVHREKPDSSRKESREAYFIGLKRKR 312


>gi|240274199|gb|EER37717.1| cell division cycle protein [Ajellomyces capsulatus H143]
          Length = 355

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 116/304 (38%), Gaps = 80/304 (26%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G S  R   + ++      SS+ W  R   D Y + A ++G ++R+A+KLLQIN++++
Sbjct: 33  PSGKSLGRKPRELIEISKRYSSSKRWQARQAKDKYSREAGVKGLKSRAAFKLLQINDRYK 92

Query: 64  ILQSNRRIVD------------------------LGSSPGSWSQVAARITGS-------- 91
           I +  + IVD                        +   P    +  + I G+        
Sbjct: 93  IFKPGQSIVDLGYAPGSWSQVAVDLTRPNGRVVGVDIIPAQPPKGVSTIQGNFLSLQIQA 152

Query: 92  -------NANNTRVVAIDILDM-------EPILGVKFFKFDF-LDLDSWEFIRQAIGGN- 135
                  N N  R  +++           +    V+  +     +  +   I QA G N 
Sbjct: 153 YVREFLRNPNRGRAQSLNHFKNADQRSQPKTDDEVEEIEGYIDRERSASSHITQADGANE 212

Query: 136 -----------PDLVLSDMAYP---------------------TIGHRKIDHLRTMSLCE 163
                       D+VLSDM+ P                     T G    DH  +M LC 
Sbjct: 213 TIPDVAVGDKTVDVVLSDMSAPWEQTTGFWKKSLSDPYRRMMNTSGMSFRDHAGSMDLCR 272

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + +  
Sbjct: 273 AALEFSFNVLKTGGHFVCKFYQGAEDKALEKQLKELFQTVHREKPESSRSESKEAYFIGL 332

Query: 224 GFRK 227
             ++
Sbjct: 333 RRKQ 336


>gi|75400150|sp|Q8KTR0|RLME_TREPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|21702591|gb|AAM75988.1|AF481102_24 cell division protein [Candidatus Tremblaya princeps]
          Length = 202

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 1/201 (0%)

Query: 24  GSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
           G + +W  RH+ D +V+ ++  G+RAR+A KL +++ K+ ++     +++LGSSPG WSQ
Sbjct: 2   GRTSEWYARHVGDSFVRTSKAWGYRARAACKLKRLDAKYGLMSRQCDVLELGSSPGVWSQ 61

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
             +     +    R V++D   M  + GV F   D  + ++   +   +     L+LSD+
Sbjct: 62  YISYERRVSGMAWRTVSVDTRAMVRVRGVSFIHGDITEAETMAEVSSRLPSGVGLILSDI 121

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
                  R +D + T  + E     +   L  GG  L KTF     + I  ++++HF  V
Sbjct: 122 CPHPSCERYLDSIATAKVAETLLMVSRRFLLDGGALLHKTFVIRAEH-IASVMERHFSSV 180

Query: 204 IHVKPVASRAESVEMFLLAKG 224
              +  +SR+ + E +LL  G
Sbjct: 181 EVYRDASSRSFNSEAYLLCVG 201


>gi|302308507|ref|NP_985433.2| AFL117Cp [Ashbya gossypii ATCC 10895]
 gi|299790664|gb|AAS53257.2| AFL117Cp [Ashbya gossypii ATCC 10895]
          Length = 303

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 121/280 (43%), Gaps = 65/280 (23%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           + + ++      SS  WL+R   DPY + A+++  R+R+A+KL++I+E+ ++ ++ +R++
Sbjct: 14  MRELLRGFCRFNSSGRWLSRQRRDPYTREAKVQELRSRAAFKLIEIDEQFRLFRAGQRVL 73

Query: 73  DLGSSPGSWS-------QVAARITGSNANNTR-----------VVAIDILDMEPILGVKF 114
           DLG +PG+WS       Q   ++ G +    +           V++    ++  +   + 
Sbjct: 74  DLGFAPGAWSQVAHQRTQPGGKVMGVDVLPCKPPTGVSSIQANVLSRKTHELVRLYFSRH 133

Query: 115 FKFDFLDL-------------DSWEFIRQAIGGNP-------------DLVLSDM----- 143
           F+ +  D              +  E +++     P             D+VLSDM     
Sbjct: 134 FQLNMHDELHKKHGYFQHMLEERLEELQKDNSFQPLYGMADPVHEHPLDVVLSDMYEPWP 193

Query: 144 ----------------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
                              T G    DH  +M LC+AA   A+ +L  GG F+ K + G 
Sbjct: 194 QVTGFWNNFTNAAYSRMANTSGVAVKDHYMSMDLCDAALLCAIALLRPGGSFVCKLYTGK 253

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               +   L+K F KV   KP A R+ES E++ +    RK
Sbjct: 254 EDQLLERRLRKVFTKVRRFKPEACRSESKELYFVGLDKRK 293


>gi|149919181|ref|ZP_01907664.1| cell division protein FtsJ [Plesiocystis pacifica SIR-1]
 gi|149819895|gb|EDM79317.1| cell division protein FtsJ [Plesiocystis pacifica SIR-1]
          Length = 209

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
            NRH  DP   RA+ E +  R+ YKL +I+++ ++++   R++DLG  PGSW Q A +  
Sbjct: 5   KNRH--DPNYLRAKRENFAGRAIYKLEEIDKRFRLIKPGARVLDLGCWPGSWLQYAVKRA 62

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           G++A    V  +  +++     VK F  D   L   + + +   G  D+VLSDMA  T G
Sbjct: 63  GTDATLVGVD-LKAVELALPSNVKTFVGDVNKLKLDKMVERF--GRFDVVLSDMAPNTTG 119

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
           ++  D   +  L   A   A     IGG F  K FQG   ++++  +++ +Q+    +  
Sbjct: 120 NKDFDIPVSEDLFLRALDIATGCSRIGGHFCAKVFQGARFHELIREVERRYQQAKPYRSA 179

Query: 210 ASRAESVEMFLLAKGFR 226
            +R +S E +++ +G +
Sbjct: 180 HTRKQSREQYIIGRGLK 196


>gi|216263778|ref|ZP_03435772.1| ribosomal RNA large subunit methyltransferase J [Borrelia afzelii
           ACA-1]
 gi|215979822|gb|EEC20644.1| ribosomal RNA large subunit methyltransferase J [Borrelia afzelii
           ACA-1]
          Length = 192

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND Y Q+A+ EG+ ARS YKL++INEK  +      ++D+G+SPGS+SQ A +      
Sbjct: 4   LNDEYSQKAKREGYLARSVYKLIEINEKFSLFSYG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +VA+DI D+    +    F K D    D+   I     G   LV+SD A  T G+R
Sbjct: 59  KRGILVAVDINDIGLRHVDNFYFVKGDIFSDDTVFKINTL--GPYSLVISDAAPRTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEIQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|111115138|ref|YP_709756.1| cell division protein [Borrelia afzelii PKo]
 gi|123047013|sp|Q0SNJ8|RLME_BORAP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|110890412|gb|ABH01580.1| cell division protein [Borrelia afzelii PKo]
          Length = 189

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND Y Q+A+ EG+ ARS YKL++INEK  +      ++D+G+SPGS+SQ A +      
Sbjct: 1   MNDEYSQKAKREGYLARSVYKLIEINEKFSLFSYG-NVLDIGASPGSFSQYAYK----KL 55

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +VA+DI D+    +    F K D    D+   I     G   LV+SD A  T G+R
Sbjct: 56  KRGILVAVDINDIGLRHVDNFYFVKGDIFSDDTVFKINTL--GPYSLVISDAAPRTTGNR 113

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 114 LVDTSNSFNLSMRIIDLSLEVLIKKGNLLVKVFQGGDEIQIFKKFEKYFKFVKKIRPKAV 173

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 174 RKNSFEIYFLGKSFGK 189


>gi|295674407|ref|XP_002797749.1| ribosomal RNA methyltransferase MRM2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280399|gb|EEH35965.1| ribosomal RNA methyltransferase MRM2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 357

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 114/303 (37%), Gaps = 80/303 (26%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G + R    Q  +      SS+ W  R   D Y + A ++G ++R+A+KLLQIN+KH+
Sbjct: 44  PTGENWRVQPNQIFELSIRHSSSKRWQARQAKDRYSREAIVKGLKSRAAFKLLQINDKHK 103

Query: 64  ILQSNRRIVDLGSS------------------------PGSWSQVAARITGS-------- 91
           I +  + +VDLG +                        P    +  + I G+        
Sbjct: 104 IFKVGQSVVDLGYAPGSWSQVAVELTQPNGRVVGVDIIPAQPPKGVSTIQGNFLSPQVQA 163

Query: 92  -------NANNTRVVAIDILDMEPILG--VKFFK-----FDFLDLDSWEFIRQAIGGNP- 136
                  N N  RV  ++  +        +  ++            S       +GG+  
Sbjct: 164 YVQEFLRNPNRGRVQRLNHFENTDPDSQSITGYQIEESEGYIDRERSASSHITQVGGDAE 223

Query: 137 ------------DLVLSDMAYP---------------------TIGHRKIDHLRTMSLCE 163
                       D+VLSDM+ P                     T G    DH  +M LC 
Sbjct: 224 DVSDTAMGDKTVDVVLSDMSAPWDQTTGFWKKSLSDPYHRMMNTSGMSFRDHAGSMDLCR 283

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + +  
Sbjct: 284 AALEFSFNVLKTGGHFVCKFYQGAEDKALERQLKELFQTVHREKPESSRSESKEAYFIGL 343

Query: 224 GFR 226
             +
Sbjct: 344 RRK 346


>gi|325095423|gb|EGC48733.1| cell division cycle protein [Ajellomyces capsulatus H88]
          Length = 854

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 116/304 (38%), Gaps = 80/304 (26%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G S  R   + ++      SS+ W  R   D Y + A ++G ++R+A+KLLQIN++++
Sbjct: 532 PSGKSLGRKPRELIEISKRYSSSKRWQARQAKDKYSREAGVKGLKSRAAFKLLQINDRYK 591

Query: 64  ILQSNRRIVD------------------------LGSSPGSWSQVAARITGS-------- 91
           I +  + IVD                        +   P    +  + I G+        
Sbjct: 592 IFKPGQSIVDLGYAPGSWSQVAVDLTRPNGRVVGVDIIPAQPPKGVSTIQGNFLSLQIQA 651

Query: 92  -------NANNTRVVAIDILDM-------EPILGVKFFKFDF-LDLDSWEFIRQAIGGN- 135
                  N N  R  +++           +    V+  +     +  +   I QA G N 
Sbjct: 652 YVREFLRNPNRGRAQSLNHFKNADQRSQPKTDDEVEEIEGYIDRERSASSHITQADGANE 711

Query: 136 -----------PDLVLSDMAYP---------------------TIGHRKIDHLRTMSLCE 163
                       D+VLSDM+ P                     T G    DH  +M LC 
Sbjct: 712 TIPDVAVGDKTVDVVLSDMSAPWEQTTGFWKKSLSDPYRRMMNTSGMGFRDHAGSMDLCR 771

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + +  
Sbjct: 772 AALEFSFNVLKTGGHFVCKFYQGAEDKALEKQLKELFQTVHREKPESSRSESKEAYFIGL 831

Query: 224 GFRK 227
             ++
Sbjct: 832 RRKQ 835


>gi|297180940|gb|ADI17143.1| 23S rRNA methylase [uncultured gamma proteobacterium HF0070_08D07]
          Length = 209

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 3/207 (1%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
           S +  +  W      D ++++AQ  G  +R+ +KL +++ K  +L+  + I++LG++PG 
Sbjct: 2   SRKKKTGGWRRSQREDFFLKKAQGRGLVSRAYFKLQELDAKFDLLKPKQSILELGAAPGG 61

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLV 139
           W +        + +    +A+D   ++     K       +    + I + +     DLV
Sbjct: 62  WVRYIEDKL--SGDENLYIAVDPSPVKSSGLAKIISGKSNEPWVSQEIERILESKKLDLV 119

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           LSDMA    G R +D + +  L E A   A+  L  GG  + K FQG      +   ++ 
Sbjct: 120 LSDMAPNISGVRVVDDIASRELAEVALNTAVNYLAPGGRMVAKLFQGPEAQSFMEEAQEC 179

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F K +  KP ASR ES E+F++A  F+
Sbjct: 180 FLKSVLFKPAASRPESREVFVVADSFK 206


>gi|39974589|ref|XP_368685.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145018542|gb|EDK02821.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 385

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 42/238 (17%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINE-------------------------KHQIL 65
           ++   D Y + A+ +GWRARSA+KLLQ++E                         + +  
Sbjct: 5   SKDKRDAYYRLAKEQGWRARSAFKLLQLDEGSWSQVLSRVLIKGEKFGRTAWQDDEAKFR 64

Query: 66  QSNRRIVD-LGSSP---GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
           +    I D  G  P   G               + ++V+ID+  + P+ G+   + D   
Sbjct: 65  RQMLHIFDGQGQEPVVDGQGDPSVTDAELKPRKDVKIVSIDLQPISPLPGIVTLRADITH 124

Query: 122 LDSWEFIRQAIG-------------GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             +   + +A+                 DLVLSD A    G   +D      L  AA   
Sbjct: 125 PATVPLLLKALDPGYDPKTMSQQASHPVDLVLSDGAPDVTGLHDLDIYVQSQLLFAALNL 184

Query: 169 ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           AL +L  GG F+ K F+G   + +   LK  F+KVI  KP +SRA SVE F++   F+
Sbjct: 185 ALCVLKPGGKFVAKIFRGRNVDVLYAQLKVFFEKVIVAKPRSSRASSVEAFIVCLNFQ 242


>gi|56758278|gb|AAW27279.1| SJCHGC04749 protein [Schistosoma japonicum]
          Length = 260

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 35/245 (14%)

Query: 5   PGSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH- 62
           P  +  +GL+  + N RS  GSS+ W+ R  +DPYV+ A+LE +R RSA+KLLQ+NEK  
Sbjct: 14  PYCTFNQGLSCLITNVRSNHGSSQRWIARQRSDPYVKHARLESYRCRSAFKLLQLNEKIY 73

Query: 63  -QILQSNRRIVDLGSSPGSWSQVA----ARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
             + +    ++D G++PGSW QVA         ++ N   ++A D+L+   + GV     
Sbjct: 74  GGLFKPGDIVIDCGAAPGSWCQVASSLINSNDNNSNNQGLIIAFDLLNFAQLPGVSIHSG 133

Query: 118 DFLD--LDSWEFIRQAIGGN------------------PDLVLSDMAYPTIGHRKIDHLR 157
             L+   +    I Q+I  +                   D+VLSD+A    G R ID   
Sbjct: 134 IDLNNWSECINLINQSISNHFINNNNRQLQDIQKLLPAVDVVLSDIAPNVTGIRDIDIPA 193

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF--------QKVIHVKPV 209
            M L        + +   G  F++K F+     +    + + +             +KP 
Sbjct: 194 MMKLAYNILRVTISVSKQGASFVIKLFESPEAEEFKQTVSQFYTFNSSKYSSFTRFIKPA 253

Query: 210 ASRAE 214
           ASR  
Sbjct: 254 ASRKR 258


>gi|134117409|ref|XP_772598.1| hypothetical protein CNBK3020 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255215|gb|EAL17951.1| hypothetical protein CNBK3020 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1267

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 61/252 (24%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++ +  G+RARSAYKLL ++E+  +  +    VDL ++PGSWSQV  +     + 
Sbjct: 11  RDVYYRKGKSAGYRARSAYKLLHLDEEFDLFTNVHTAVDLCAAPGSWSQVLGQKLKPKSK 70

Query: 95  NT----RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
                 RVV+ D+  M P+  +   + D     +   +  A+GG   DLV+ D A    G
Sbjct: 71  QGGEGTRVVSCDLQPMAPLPNITTLQTDITLPSTIPLVLDALGGRKADLVVCDGAPDVTG 130

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT---NDILCLLKKHFQK---- 202
              +D      L  AA   +L ++  G   + K F          +   L+  F      
Sbjct: 131 VHDLDAYLHSQLLLAALTLSLTLMAPGATLIFKIFLSPLDPRAEFLASQLRCFFSSPLPE 190

Query: 203 -------------------------------------------------VIHVKPVASRA 213
                                                            V   KP +SR 
Sbjct: 191 DKEKEDEFGQYAEFEEEGEYAEEAGQDKGDEKKRNVGTKGYDPQGRRGGVWVRKPRSSRQ 250

Query: 214 ESVEMFLLAKGF 225
            S E F++ + F
Sbjct: 251 GSAEAFIVCRNF 262


>gi|225557686|gb|EEH05971.1| cell division cycle protein [Ajellomyces capsulatus G186AR]
          Length = 337

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 116/304 (38%), Gaps = 80/304 (26%)

Query: 4   PPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
           P G S  R   + ++      SS+ W  R   D Y + A ++G ++R+A+KLLQIN++++
Sbjct: 15  PSGKSLGRKPRELIEISKRYSSSKRWQARQAKDKYSREAGVKGLKSRAAFKLLQINDRYK 74

Query: 64  ILQSNR------------------------RIVDLGSSPGSWSQVAARITGS-------- 91
           I +  +                        R+V +   P    +  + I G+        
Sbjct: 75  IFKPGQSVVDLGYAPGSWSQVAVDLTQPNGRVVGVDIIPAQPPKGVSTIQGNFLSLQIQA 134

Query: 92  -------NANNTRVVAIDILDM-------EPILGVKFFKFDF-LDLDSWEFIRQAIGGN- 135
                  N N  R  +++           +    V+  +     +  +   I QA G N 
Sbjct: 135 YVREFLRNPNRGRAQSLNHFKNADQRSQPKTDDEVEEIEGYIDRERSASSHITQADGANE 194

Query: 136 -----------PDLVLSDMAYP---------------------TIGHRKIDHLRTMSLCE 163
                       D+VLSDM+ P                     T G    DH  +M LC 
Sbjct: 195 TIPDVAVGDKTVDVVLSDMSAPWEQTTGFWKKSLSDPYRRMMNTSGMSFRDHAGSMDLCR 254

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           AA  F+  +L  GG F+ K +QG     +   LK+ FQ V   KP +SR+ES E + +  
Sbjct: 255 AALEFSFNVLKTGGHFVCKFYQGAEDKALEKQLKELFQTVHREKPESSRSESKEAYFIGL 314

Query: 224 GFRK 227
             ++
Sbjct: 315 RRKQ 318


>gi|213622212|ref|ZP_03374995.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 139

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYPTIGHRKIDHLR 157
             +V+SDMA    G   +D  R
Sbjct: 118 VQVVMSDMAPNMSGTPAVDIPR 139


>gi|58260402|ref|XP_567611.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229692|gb|AAW46094.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1277

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 61/252 (24%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D Y ++ +  G+RARSAYKLL ++E+  +  +    VDL ++PGSWSQV  +     + 
Sbjct: 11  RDVYYRKGKSAGYRARSAYKLLHLDEEFDLFTNVHTAVDLCAAPGSWSQVLGQKLKPKSK 70

Query: 95  NT----RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIG 149
                 RVV+ D+  M P+  +   + D     +   +  A+GG   DLV+ D A    G
Sbjct: 71  QGGEGTRVVSCDLQPMAPLPNITTLQTDITLPSTIPLVLDALGGRKADLVVCDGAPDVTG 130

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT---NDILCLLKKHFQK---- 202
              +D      L  AA   +L ++  G   + K F          +   L+  F      
Sbjct: 131 VHDLDAYLHSQLLLAALTLSLTLMAPGATLIFKIFLSPLDPRAEFLASQLRCFFSSPLPE 190

Query: 203 -------------------------------------------------VIHVKPVASRA 213
                                                            V   KP +SR 
Sbjct: 191 DKEKEDEFGQYAEFEEEGEYAEEAGQDKGDEKKRNVGTKGYDPQGRRGGVWVRKPRSSRQ 250

Query: 214 ESVEMFLLAKGF 225
            S E F++ + F
Sbjct: 251 GSAEAFIVCRNF 262


>gi|315056971|ref|XP_003177860.1| ribosomal RNA methyltransferase MRM2 [Arthroderma gypseum CBS
           118893]
 gi|311339706|gb|EFQ98908.1| ribosomal RNA methyltransferase MRM2 [Arthroderma gypseum CBS
           118893]
          Length = 292

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 116/285 (40%), Gaps = 59/285 (20%)

Query: 1   MVKPP-GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQIN 59
           M+KP   +         VK      SS+ W +R   D Y + A ++G ++R+A+KLLQIN
Sbjct: 1   MLKPALQNRGLPSCGSFVKVFFRSISSKQWQSRQGKDTYTKEAGMQGLKSRAAFKLLQIN 60

Query: 60  EKHQILQSNR------------------------RIVDLGSSPGSWSQVAARITGSNANN 95
           +++++ +S +                        R+V +   P    +  + I G+  + 
Sbjct: 61  DRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPRGRVVGVDIIPAQPPRGVSTIQGNFLSP 120

Query: 96  TRVVAIDILDMEPILGVKFFK---------------------FDFLD------------- 121
                +     +P  G    +                       ++D             
Sbjct: 121 RVQEYVKDFVRDPNRGRPRSQLPTSSEQEESSPFTKPDTETDGGYIDLERSSSAHINKEG 180

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +  +   +A  G+ D+VLSDM   T G +  DHL +M LC+AA  FA  +L  GG F+ 
Sbjct: 181 DEVAQPPNKAKVGSVDVVLSDMLMNTSGTKSRDHLGSMELCKAALDFASNVLKQGGHFVC 240

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K +QG    +    LK+ F +V   KP +SR+ES E + +    R
Sbjct: 241 KYYQGPGEKEFENELKRLFYRVYREKPDSSRSESKEAYFIGIRRR 285


>gi|219684632|ref|ZP_03539575.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           PBr]
 gi|219671994|gb|EED29048.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           PBr]
          Length = 192

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 4   LGDEYFQKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+    +    F K D    D+   I +   G   LV+SD+A  T G+R
Sbjct: 59  KRGVLVSVDINDISLRYVDNFYFIKGDIFSDDTAYKINKF--GPYSLVISDVAPKTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSFEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|219685646|ref|ZP_03540461.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           Far04]
 gi|219672834|gb|EED29858.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
           Far04]
          Length = 192

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y Q+A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 4   LGDEYFQKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+    +    F K D    D+   I +   G   L++SD+A  T G+R
Sbjct: 59  KRGVLVSVDINDISLRYVDNFYFIKGDIFSDDTAYKINKF--GPYSLIISDVAPKTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSFEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|156086912|ref|XP_001610863.1| rRNA methyltransferase [Babesia bovis T2Bo]
 gi|154798116|gb|EDO07295.1| rRNA methyltransferase, putative [Babesia bovis]
          Length = 339

 Score =  158 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 94/285 (32%), Gaps = 93/285 (32%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN-------------------------- 68
            D Y ++A+ +G+RARS YKL+QI + + I                              
Sbjct: 9   RDVYYRKAKEDGYRARSVYKLIQIFQAYGIFHPIARIEQVTEILRNAKCKHCCPGDNLAN 68

Query: 69  ----------------------RRIVDLGSSPGSWSQV---------------------- 84
                                 R +VDL ++PGSW+Q                       
Sbjct: 69  VRKFDILEQRGNSYDCSSLPRIRNVVDLCAAPGSWTQCIRDFVYNEYFVYKDAAKNLAEN 128

Query: 85  ---AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------ 135
                +   S      ++A+D+ +M P+ GV+  K D  +    E I+     N      
Sbjct: 129 NTLCVKKVESCNLKPVIIAVDLQEMAPVKGVQILKGDITNEQVMEKIKNLFVENVSKRLL 188

Query: 136 --------------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
                           ++  D A    G  + D      L  AA      +L+  G F+ 
Sbjct: 189 ETTEDNSELADSSLAQIITCDGAPDVSGVHQTDAYVQSCLIRAAISVCSAILDPNGLFVC 248

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F   +   I   +   F      KP ASR  S E F++A+GF+
Sbjct: 249 KAFCNDSDAPIYRHVNIFFDDFSIHKPAASRLTSAECFVIARGFK 293


>gi|261187463|ref|XP_002620155.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis SLH14081]
 gi|239594205|gb|EEQ76786.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis SLH14081]
 gi|327356488|gb|EGE85345.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 309

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 103/260 (39%), Gaps = 65/260 (25%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  R   D Y + A ++G ++R+A+KL+QINEKH+I +  + +VDLG +PGSWSQVA  +
Sbjct: 41  WQARQAKDKYSREAAVKGLKSRAAFKLIQINEKHKIFKPGQSVVDLGYAPGSWSQVAVDL 100

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD------LVLSD 142
           T  N    RVV +DI+  +P  GV   + +FL      ++++ +               D
Sbjct: 101 TQPNG---RVVGVDIIPAQPPKGVSTIQGNFLSPQIQAYVQEFLRNPNRGRAQSLNHFDD 157

Query: 143 MAYPTIGHRK---------IDHLRTMSLCEAATF-------------------FALEMLN 174
               +              ID  R+ SL  A                       +  M+N
Sbjct: 158 ADPRSQPQADSEVEETEGYIDRERSASLHIAQVDGGNEDIPDIAVADKTVDVVLSDMMMN 217

Query: 175 IGG-DFLV---------------------------KTFQGGTTNDILCLLKKHFQKVIHV 206
             G  F                             K +QG     +   LK+ FQ V   
Sbjct: 218 TSGMSFRDHAGSMDLCRAALEFSFNVLKTGGHFVCKFYQGAEDKALERQLKELFQNVHRE 277

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR+ES E + +    +
Sbjct: 278 KPESSRSESKEAYFIGLRRK 297


>gi|270667884|ref|ZP_06222474.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
 gi|270316776|gb|EFA28530.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
          Length = 143

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
             +VDLG++PG WSQ      G      RV+A DIL+M PI+GV F + DF D +    +
Sbjct: 1   MTVVDLGAAPGGWSQYVVSQIGGKG---RVIACDILEMAPIVGVDFLQGDFRDENVLNAL 57

Query: 129 RQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
              +G    D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG 
Sbjct: 58  LARVGEDKVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGE 117

Query: 188 TTNDILCLLKKHFQKVIHVKPVASR 212
             ++ L   +  F  V   KP ASR
Sbjct: 118 GFDEYLRETRSLFNVVKVRKPEASR 142


>gi|216264466|ref|ZP_03436458.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 156a]
 gi|221217749|ref|ZP_03589217.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 72a]
 gi|215980939|gb|EEC21746.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 156a]
 gi|221192426|gb|EEE18645.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 72a]
          Length = 192

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 4   LDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+         F K D    D+   I         LV+SD+A  T G+R
Sbjct: 59  KRGILVSVDINDIGLRYDDNFYFIKGDIFSDDTVFKINTF--KPYSLVISDVAPKTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|168031208|ref|XP_001768113.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680551|gb|EDQ66986.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+   + ARSA+KLL+I +KH+I++    ++DLG +PG++ QVA +  G     
Sbjct: 7   DFFYREARRLKYVARSAFKLLEIQKKHRIIRPGASVLDLGCAPGAFLQVACQNLGPPEKG 66

Query: 96  TRVVAIDILDMEPILG-----VKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
             VV +DI  ++         V+    D + +         A G    +++SDM     G
Sbjct: 67  GVVVGVDIKKVKVPADHCDHRVRTIASDVMQMSHAALASFSASGKGYSVLISDMCPSVSG 126

Query: 150 HRKIDHLRTMSLCEAATFFAL-------------EMLNIGGDFLVKTFQGGTTNDILCLL 196
               D   +  L   A   AL              +L  GG  ++K  +G  +   L L 
Sbjct: 127 VGSKDAALSAELGMCALHLALGQSEVDDSIPETGGILLPGGSIVIKLLEGEDSQGFLKLC 186

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAK 223
           K  FQ++  ++P A+R+ S E++ + K
Sbjct: 187 KGRFQQLHWLRPKATRSTSREIYFIGK 213


>gi|225552371|ref|ZP_03773311.1| ribosomal RNA large subunit methyltransferase J [Borrelia sp. SV1]
 gi|225371369|gb|EEH00799.1| ribosomal RNA large subunit methyltransferase J [Borrelia sp. SV1]
          Length = 192

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 4   LDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+         F K D    D+   I         LV+SD+A  T G+R
Sbjct: 59  KRGILVSVDINDIGLRYDDNFYFIKGDIFSDDTVFKINTF--RPYSLVISDVAPKTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|162450262|ref|YP_001612629.1| hypothetical protein sce1990 [Sorangium cellulosum 'So ce 56']
 gi|189040342|sp|A9FQE4|RLME_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|161160844|emb|CAN92149.1| rrmJ [Sorangium cellulosum 'So ce 56']
          Length = 212

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + A+ +G+ ARS +KL +I+ + ++L+  +R++DLG++PGSWS  AA+  G+    
Sbjct: 20  DAFTKAAKAQGYPARSVFKLEEIDRRVRLLRPGQRVLDLGAAPGSWSMYAAQRIGAGG-- 77

Query: 96  TRVVAIDILDMEPILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            +++A+D+  +    G      + D L L + E + Q      D+VLSDMA  T G +  
Sbjct: 78  -KLLAVDLSPITAAFGPQATVVQGDALSL-TNEALAQF--APYDVVLSDMAPATSGSKIA 133

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           D  R+  L   A   A  +L  GG F+ K F           L+   ++V  ++P  +RA
Sbjct: 134 DQARSYELFMRAVAVAEALLAPGGAFVGKIFMSEDFVKARDALRNLCEEVRSIRPEGTRA 193

Query: 214 ESVEMFLLAKGFR 226
            SVE+FL+    +
Sbjct: 194 SSVEIFLVGLKRK 206


>gi|325117088|emb|CBZ52640.1| KLLA0F18414p, related [Neospora caninum Liverpool]
          Length = 393

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 78/196 (39%), Gaps = 39/196 (19%)

Query: 70  RIVDLGSSPGSWSQVAARITGSN------------------------------------- 92
           R VDL ++PGSWSQV  R    N                                     
Sbjct: 117 RAVDLCAAPGSWSQVLRRRLWENYRRKLSRYEKRTSRLASQTACDGTQPSSPSSVAESLS 176

Query: 93  -ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
                 +VA+D+ ++ PI GV   + D     + + I       P DLV+ D A    G 
Sbjct: 177 PPAPPLIVAVDLQELAPIPGVYTLQADITHESTVKAILDFFAQQPADLVICDGAPDVTGM 236

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             ID      L  AA   A ++L  GG F+ KTF+G     +   LK  F  V   KP A
Sbjct: 237 HDIDEFIQAQLLFAALKVACKVLKPGGVFVCKTFRGEQIPLVYLQLKTLFDAVRCCKPAA 296

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S+E FL+ +GFR
Sbjct: 297 SRNSSIEAFLVCRGFR 312



 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
          L++   D Y +RA+ EG+RARSAYKLLQ++++   L  
Sbjct: 4  LSKDRRDIYYRRAKEEGYRARSAYKLLQLDDELHFLSP 41


>gi|261205268|ref|XP_002627371.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis SLH14081]
 gi|239592430|gb|EEQ75011.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis SLH14081]
          Length = 405

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 102/281 (36%), Gaps = 88/281 (31%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTRVVAIDILD---------------------------------------- 105
           +R+     +  R    +                                           
Sbjct: 65  SRVLIKGESFGRRAWEEKRRRERGEEQKLGTVKEGPETADQQQGQKGAQKEEEEEEEEET 124

Query: 106 MEPILGVKFFKFD----------------FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           ++P   VK    D                     +   + +A+  +PD    D +     
Sbjct: 125 LKPRKNVKIVAIDLQPMTPLEGITTLKADITHPSTIPLLLKAL--DPDDYTHDTSSTNNT 182

Query: 150 HRKI--DHLRTMSLCEA-----------------------ATFFALEMLNIGGDFLVKTF 184
             K    H   + L  +                       A   A+ +L  GG F+ K F
Sbjct: 183 TTKTPHHHPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIF 242

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +G   + I   LK  F+KV   KP +SRA S+E F++ +GF
Sbjct: 243 RGRDVDLIYAQLKTVFEKVSVAKPRSSRASSLEAFVVCEGF 283


>gi|239611411|gb|EEQ88398.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis ER-3]
          Length = 405

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 102/281 (36%), Gaps = 88/281 (31%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
           ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5   SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86  ARITGSNANNTRVVAIDILD---------------------------------------- 105
           +R+     +  R    +                                           
Sbjct: 65  SRVLIKGESFGRRAWEEKRRRERGEEQKLGTVKEGPETADQQQGQKGAQKEEEEEEEEET 124

Query: 106 MEPILGVKFFKFD----------------FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           ++P   VK    D                     +   + +A+  +PD    D +     
Sbjct: 125 LKPRKNVKIVAIDLQPMTPLEGITTLKADITHPSTIPLLLKAL--DPDDYTHDTSSTNNT 182

Query: 150 HRKI--DHLRTMSLCEA-----------------------ATFFALEMLNIGGDFLVKTF 184
             K    H   + L  +                       A   A+ +L  GG F+ K F
Sbjct: 183 TTKTPHHHPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIF 242

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +G   + I   LK  F+KV   KP +SRA S+E F++ +GF
Sbjct: 243 RGRDVDLIYAQLKTVFEKVSVAKPRSSRASSLEAFVVCEGF 283


>gi|224534384|ref|ZP_03674962.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           spielmanii A14S]
 gi|224514486|gb|EEF84802.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           spielmanii A14S]
          Length = 192

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 103/196 (52%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           +ND Y Q+A+ EG+ ARS YKL++INEK  +      ++D+G+SPGS+SQ A +      
Sbjct: 4   LNDEYSQKAKREGYLARSVYKLIEINEKFSLFSYG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +VA+DI D+    +    F + D    D+   I     G   LV+SD A  T G+R
Sbjct: 59  KRGVLVAVDINDIALRYVDNFYFIRGDVFSYDTVFKINTL--GPYSLVISDAAPRTSGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            ID   + +L       + E+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LIDTSNSFNLSMRIIDLSFEVLLKKGNLLVKVFQGGDEVQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|312149324|gb|ADQ29395.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi N40]
          Length = 189

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 1   MDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 55

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+         F K D    D+   I         LV+SD+A  T G+R
Sbjct: 56  KRGILVSVDINDIGLRYDDNFYFIKGDIFSDDTVFKINTF--KPYSLVISDVAPKTTGNR 113

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 114 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 173

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 174 RKNSFEIYFLGKSFGK 189


>gi|225449466|ref|XP_002283276.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086215|emb|CBI31656.3| unnamed protein product [Vitis vinifera]
          Length = 233

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 34/225 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQ+ +++++++    ++DLG +PG+W QVA +  G   N 
Sbjct: 8   DFFYREAQRLGYAARSAFKLLQMQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLKNG 67

Query: 96  TRVVAIDILD-----MEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIG 149
             VV ID+       M     VK    D + L   E    +       ++LSDM     G
Sbjct: 68  GVVVGIDLKKVKVPSMHCDSRVKTVCADVMKLPKDEIRAFSPQRKGFSVILSDMCPLVSG 127

Query: 150 HRKIDHLRTMSLCEAATFFALE----------------------------MLNIGGDFLV 181
               D + +  L   A   A+                             +L  GG  ++
Sbjct: 128 ITTKDAVLSAELGMQALHLAVRGPALAPSGDEIQKGEHHDDSTSGPDDDGILQPGGHLVI 187

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  +         + K  F+K   ++P A+R+ S E++L+ +G R
Sbjct: 188 KLLESEDAQGFSRICKPLFRKASWLRPKATRSSSREIYLICQGLR 232


>gi|15594658|ref|NP_212447.1| cell division protein (ftsJ) [Borrelia burgdorferi B31]
 gi|218249912|ref|YP_002374835.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi ZS7]
 gi|223889029|ref|ZP_03623620.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 64b]
 gi|224533189|ref|ZP_03673789.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi WI91-23]
 gi|224533742|ref|ZP_03674330.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi CA-11.2a]
 gi|225549132|ref|ZP_03770107.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 94a]
 gi|225550187|ref|ZP_03771147.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 118a]
 gi|226320614|ref|ZP_03796174.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 29805]
 gi|226321630|ref|ZP_03797156.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi Bol26]
 gi|9910941|sp|O51293|RLME_BORBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|254809547|sp|B7J1P0|RLME_BORBZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|2688216|gb|AAC66697.1| cell division protein (ftsJ) [Borrelia burgdorferi B31]
 gi|218165100|gb|ACK75161.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi ZS7]
 gi|223885845|gb|EEF56944.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 64b]
 gi|224511916|gb|EEF82317.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi WI91-23]
 gi|224513035|gb|EEF83398.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi CA-11.2a]
 gi|225369299|gb|EEG98752.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 118a]
 gi|225370358|gb|EEG99796.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 94a]
 gi|226232819|gb|EEH31572.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi Bol26]
 gi|226234033|gb|EEH32754.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi 29805]
          Length = 192

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 4   LDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 58

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+         F K D    D+   I         LV+SD+A  T G+R
Sbjct: 59  KRGILVSVDINDIGLRYDDNFYFIKGDIFLDDTVFKINTF--KPYSLVISDVAPKTTGNR 116

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 117 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 176

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 177 RKNSFEIYFLGKSFGK 192


>gi|239609240|gb|EEQ86227.1| ribosomal RNA large subunit methyltransferase J [Ajellomyces
           dermatitidis ER-3]
          Length = 309

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 65/260 (25%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W  R   D Y + A ++G ++R+A+KL+QINEKH+I +  + +VDLG +PGSWSQVA  +
Sbjct: 41  WQARQAKDKYSREAAVKGLKSRAAFKLIQINEKHKIFKPGQSVVDLGYAPGSWSQVAVDL 100

Query: 89  TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD------LVLSD 142
           T       RVV +DI+  +P  GV   + +FL      ++++ +               D
Sbjct: 101 TQPKG---RVVGVDIIPAQPPKGVSTIQGNFLSPQIQAYVQEFLRNPNRGRAQSLNHFDD 157

Query: 143 MAYPTIGHRK---------IDHLRTMSLCEAATF-------------------FALEMLN 174
               +              ID  R+ SL  A                       +  M+N
Sbjct: 158 ADPRSQPQADSEVEETEGYIDRERSASLHIAQVDGGNEDIPDIAVADKTVDVVLSDMMMN 217

Query: 175 IGG-DFLV---------------------------KTFQGGTTNDILCLLKKHFQKVIHV 206
             G  F                             K +QG     +   LK+ FQ V   
Sbjct: 218 TSGMSFRDHAGSMDLCRAALEFSFNVLKTGGHFVCKFYQGAEDKALERQLKELFQNVHRE 277

Query: 207 KPVASRAESVEMFLLAKGFR 226
           KP +SR+ES E + +    +
Sbjct: 278 KPESSRSESKEAYFIGLRRK 297


>gi|195941333|ref|ZP_03086715.1| cell division protein (ftsJ) [Borrelia burgdorferi 80a]
 gi|312148291|gb|ADQ30950.1| ribosomal RNA large subunit methyltransferase J [Borrelia
           burgdorferi JD1]
          Length = 189

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           ++D Y ++A+ EG+ ARS YKL++INEK  +  S   ++D+G+SPGS+SQ A +      
Sbjct: 1   MDDEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYK----KL 55

Query: 94  NNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
               +V++DI D+         F K D    D+   I         LV+SD+A  T G+R
Sbjct: 56  KRGILVSVDINDIGLRYDDNFYFIKGDIFLDDTVFKINTF--KPYSLVISDVAPKTTGNR 113

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
            +D   + +L       +LE+L   G+ LVK FQGG    I    +K+F+ V  ++P A 
Sbjct: 114 LVDTSNSFNLSMRIIDLSLEVLLKKGNLLVKVFQGGDEMQIFKKFEKYFKFVKKIRPKAV 173

Query: 212 RAESVEMFLLAKGFRK 227
           R  S E++ L K F K
Sbjct: 174 RKNSFEIYFLGKSFGK 189


>gi|161899253|ref|XP_001712853.1| Sbp1 [Bigelowiella natans]
 gi|75756346|gb|ABA27241.1| Sbp1 [Bigelowiella natans]
          Length = 286

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 34  INDPYVQRAQLEGW------RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
             + + + ++   +      R+RSA+KL+QI +K  +L+   RI+DL   PG W Q+   
Sbjct: 37  SKEKFFRLSKKFKYLYFHSFRSRSAFKLIQIEKKFNLLRFTNRIIDLCCFPGGWLQIIQL 96

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLSDMAYP 146
           +      +  +V +D++ ++P+  V F K        +  + +   G   D +L+D +  
Sbjct: 97  LAK---RSYLIVGVDLVKIKPLQSVIFIKMSIRSPMLYPALNKISKGAYYDCLLNDGSPN 153

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
                 ID      L   +   A+++L  GG  + K F     N  + LL+  F+ VI +
Sbjct: 154 VGTENIIDSEMQNGLAFFSFKIAIKVLRDGGSLVSKFFISKNLNIFIYLLRILFKYVIIL 213

Query: 207 KPVASRAESVEMFLL---AKGFRK 227
           KP ASR  S E+++L     GF+K
Sbjct: 214 KPNASRVHSSEVYILNFNFSGFKK 237


>gi|224112735|ref|XP_002316277.1| predicted protein [Populus trichocarpa]
 gi|222865317|gb|EEF02448.1| predicted protein [Populus trichocarpa]
          Length = 232

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 33/223 (14%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KLLQI +KH+++     ++DLG +PG+W QVA +  G   N 
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKKHKLIAPGSSVLDLGCAPGAWLQVACQSLGPLKNG 67

Query: 96  TRVVAIDILDMEPIL-----GVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             VV ID+  ++         V+    D +    +             +VLSDM     G
Sbjct: 68  GAVVGIDLKKVKVPPLYCDSRVQTVCADVMKLPKNQVRALSPRQKGFSVVLSDMCPLVSG 127

Query: 150 HRKIDHLRTMSLCEAATFFAL---------------------------EMLNIGGDFLVK 182
               D   +  L   A   A+                            +L  GG  ++K
Sbjct: 128 ITTRDAALSAELGMQALGLAVGRAATAHLDEIRTDRLLNDSVCTADDNGILQPGGHLVIK 187

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +     +   + K  F+K   ++P A+R+ S E++L+ +G 
Sbjct: 188 LLESEDNKEFSRICKPLFRKASWLRPKATRSSSREIYLICQGL 230


>gi|213162026|ref|ZP_03347736.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 128

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YVQ+AQ +G R+R+ +KL +I +  ++ +    +VDLG+
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG-N 135
           +PG WSQ      G      R++A D+L M+PI+GV F + DF D    + + + +G   
Sbjct: 61  APGGWSQYVVTQIGGKG---RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSK 117

Query: 136 PDLVLSDMAYP 146
             +V+SDMA  
Sbjct: 118 VQVVMSDMAPN 128


>gi|320169116|gb|EFW46015.1| ribosomal RNA large subunit methyltransferase J [Capsaspora
           owczarzaki ATCC 30864]
          Length = 317

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 105/299 (35%), Gaps = 83/299 (27%)

Query: 9   SRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL--- 65
                T          SS  W  R  +DPYV +A  +G+R RSAYKL Q+++K   L   
Sbjct: 17  GSIAATAAASGSRLGASSSRWTKRQQSDPYVHQALEDGYRCRSAYKLKQLDDKFHFLRTP 76

Query: 66  -----------------------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
                                  +S   ++D G+ PG W+QVA    G +  +  +   +
Sbjct: 77  AGQAAASKRATASTATAAQPVVVRSGLVVIDCGARPGGWTQVAVERVGKDFRDLLLRHSN 136

Query: 103 ILD----MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP------------ 146
                    P+ G +  +    D +    ++        +  S+ A              
Sbjct: 137 ETKQSSGTPPMAGAQQNEAHI-DKEEQAQLKPNATNASSIATSNGAANAPPSPPLSPLVL 195

Query: 147 ----------------------------------------TIGHRKIDHLRTMSLCEAAT 166
                                                     G+  + HL+ ++L EAA 
Sbjct: 196 AVDIEPMERVPGAIVLPQADMTAILGTRLVDVVLSDMAPPASGNAGVTHLQCVNLIEAAL 255

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            FA   L I G F+ K+F G     +   L++HF++V   KP A+R ES E + + +GF
Sbjct: 256 RFATRFLRIDGWFVCKSFHGTEDQLLTTTLRRHFREVHFCKPPATRTESGEFYYVCEGF 314


>gi|149235103|ref|XP_001523430.1| hypothetical protein LELG_05276 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452839|gb|EDK47095.1| hypothetical protein LELG_05276 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 300

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 110/200 (55%), Gaps = 9/200 (4%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-QSNRRIVDLG 75
           V  R     +R  L +  +DP+ +R + + +R+R+A+K+L+IN++ ++  ++ + IVDLG
Sbjct: 23  VLRRFKSKQTRKHLAKVQDDPFNRR-KGDFYRSRAAFKILEINDRCRLFHKNCKNIVDLG 81

Query: 76  SSPGSWSQVAA-RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
            +PG+W+QVA  ++      + +++ IDI +  P  G  + + D L  ++ E I++    
Sbjct: 82  FAPGAWTQVAVEKLHEQKIEDFKILGIDINEAVPYRGCHYIQGDLLKKETHEKIKEFFKS 141

Query: 135 N------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
                   DL++SDM     GH   DHL  M LC AAT  + + L  GG+ ++K + G  
Sbjct: 142 KDGSPEQIDLIMSDMMVNCTGHEHYDHLGNMELCGAATILSFDTLKTGGNLVMKVWHGSE 201

Query: 189 TNDILCLLKKHFQKVIHVKP 208
              +   ++  F++++ +KP
Sbjct: 202 EKLLDLRMRIMFERLVRMKP 221


>gi|153217144|ref|ZP_01950908.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           1587]
 gi|124113837|gb|EAY32657.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           1587]
          Length = 162

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 4/129 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D YV  A+ +G+R+R+ +K+ +I  K ++L++   +VDLG+
Sbjct: 1   MSKQKHSASSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN- 135
           +PG WSQ AA++ G      RV+A D+L ME I GV F + DF +      +   I  + 
Sbjct: 61  APGGWSQFAAKVVGEGG---RVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDM 117

Query: 136 PDLVLSDMA 144
            D+V+SDMA
Sbjct: 118 VDVVMSDMA 126


>gi|218197285|gb|EEC79712.1| hypothetical protein OsI_21019 [Oryza sativa Indica Group]
          Length = 868

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           +   D +   A+ +G+R+R+A+KLLQ++ + + L + R ++DL ++PG W QVA      
Sbjct: 7   KQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPT 147
            A    VV +D++ + PI G      D         +R+ +  N     D+VL D +   
Sbjct: 67  GAF---VVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNV 123

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
            G    +     SL   A   A   L   G F+ K F+    N I+  LK+
Sbjct: 124 GGAWAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQ 174


>gi|320586619|gb|EFW99289.1| cell division protein [Grosmannia clavigera kw1407]
          Length = 341

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 99/270 (36%), Gaps = 65/270 (24%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR------------ 69
              SS  W +R   D Y + A++ G + R+A+KLL+++ K+++ +  +            
Sbjct: 63  AGSSSSRWTSRQEKDIYAREAKVRGLKGRAAFKLLEMDSKYRLFRPGQMVVDLGYAPGSW 122

Query: 70  ------------RIVDLGSSPGSWSQVAARITGS--------------NANNTRVVAI-- 101
                       R++ +   P    +  + I G+                +  R +A   
Sbjct: 123 SQVALERTKPTGRVLGIDLIPAQPPRGVSTIQGNFLAPSVRALVKEYLATSKKRPIARNR 182

Query: 102 ------DILDMEPILGVKFFKFD------FLDLDSWEFIRQAIGGNP------------- 136
                 D    +          D          ++        G +              
Sbjct: 183 ESKSDPDARAPDDFEEATDIVLDRPSYLQIGQEEALTSALPLTGEDVAPVQDSIDSSRTV 242

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
           D+VLSDM   T G    DH  +M LC AA  FA + L  GG F+ K +QGG    +   L
Sbjct: 243 DVVLSDMMMNTSGTPFRDHAGSMDLCAAALEFASDTLRPGGHFVCKFYQGGEDKALETRL 302

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K F KV   KP +SR+ES E F +A   +
Sbjct: 303 LKMFAKVHREKPNSSRSESKESFFVALRRK 332


>gi|1749628|dbj|BAA13871.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 173

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +     ++D+G +PGSWSQVA ++ G+     +V+ IDI  + P  GV     D  D ++
Sbjct: 1   INKEDVVIDVGFAPGSWSQVAKKLVGNKG---KVIGIDIQHIAPPEGVLPIYGDIRDPNT 57

Query: 125 WEFIRQAIG-------------GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
              + +A+                 D V+SDM +   G R  DH  +M LC +A   AL 
Sbjct: 58  LTKLFEALRLLHEPNTNDSIDCRVVDAVISDMLHKATGIRIRDHALSMELCASALHVALT 117

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L   G F+ K + G    D+  LLK HF+ V  +KP AS  ES E + +    +
Sbjct: 118 FLKSNGSFICKFYMGDEDADLQNLLKSHFRFVQVMKPKASLKESREAYFVCLERK 172


>gi|237832339|ref|XP_002365467.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|211963131|gb|EEA98326.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii ME49]
          Length = 394

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 78/195 (40%), Gaps = 39/195 (20%)

Query: 70  RIVDLGSSPGSWSQ------------VAARITGSNANNTR-------------------- 97
           R VDL ++PGSWSQ              AR     +   R                    
Sbjct: 118 RAVDLCAAPGSWSQVLRRRLRDNFRRKLARYEKQVSEQARDSENSPSSTSSSSLSSPSLR 177

Query: 98  ------VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
                 +VA+D+ +M PI GV   + D     + + I       P DLV+ D A    G 
Sbjct: 178 PPAPPLIVAVDLQEMAPIPGVHALQADITHESTVKAILDFFAQQPADLVVCDGAPDVTGM 237

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
             ID      L  AA   A ++L  GG F+ K F+G     +   LK  F +V   KP A
Sbjct: 238 HDIDEFIQAQLLFAALRVACKVLKPGGVFVCKAFRGEQIPLVYVQLKTLFAEVRCCKPAA 297

Query: 211 SRAESVEMFLLAKGF 225
           SR  S+E FL+ KGF
Sbjct: 298 SRNSSIEAFLVCKGF 312



 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
          L++   D Y +RA+ EG+RARSAYKLLQ++++   L  
Sbjct: 4  LSKDRRDIYYRRAKEEGYRARSAYKLLQLDDELHFLSP 41


>gi|90085359|dbj|BAE91420.1| unnamed protein product [Macaca fascicularis]
          Length = 198

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFFK-FDFLDL 122
            R++D G++PG+WSQVA +   +           V+ +D+L + P+ G  F    D  D 
Sbjct: 26  NRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPIGFVLGVDLLHIFPLEGATFLCPADVTDP 85

Query: 123 DSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            + + I + + GG  D++LSDMA    G R +DH R +SLC        ++L   G FL 
Sbjct: 86  RTSQRILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLC 145

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           KT+ G  ++ +   L + FQ V  +KP ASR ES E++ LA  ++
Sbjct: 146 KTWAGSQSHRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQ 190


>gi|325142054|gb|EGC64483.1| FtsJ-like methyltransferase family protein [Neisseria meningitidis
           961-5945]
          Length = 120

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 3/115 (2%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ WL+ H+ND YV  AQ +G+RAR+AYKLL+INEK ++++    + DLGS+PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           SQVAA++TG++     V A+DIL ME I GV F + DF + D        +   P
Sbjct: 64  SQVAAKLTGTSGA---VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRP 115


>gi|225710072|gb|ACO10882.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
          Length = 201

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 7/157 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++A+ EG+RARSAYKLL++++K +IL+ N  +++ G +PG+W+QV 
Sbjct: 49  SSSWIRRQAKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVL 108

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN--PDLVLSD 142
                S      +++ D+LD EP+         DF    + + I   +G +   DLVLSD
Sbjct: 109 TERVSSGT----IISCDLLDYEPVGRAIILPNSDFTSPSTQDTILSHLGKSSGFDLVLSD 164

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           MA    G  +++H + ++L   AT FAL        F
Sbjct: 165 MAPNASGMAELNHGQILNLSYEATKFALRHSKPEAAF 201


>gi|197725282|pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
           Division From Thermoplasma Volcanicum Gss1
          Length = 191

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 10/184 (5%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            R+R+A+KL  + +++++++    ++++GSSPG W+QV       N+   ++++ID+ + 
Sbjct: 5   LRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVL------NSLARKIISIDLQEX 58

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
           E I GV+F + D      ++ I +A+        D V+SD      G    DH  +  + 
Sbjct: 59  EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAXAKVSGIPSRDHAVSYQIG 118

Query: 163 EAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +     A+  L  GG+ L+K FQG  TND + + +K+F      KP ASR  S E+++  
Sbjct: 119 QRVXEIAVRYLRNGGNVLLKQFQGDXTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIXF 178

Query: 223 KGFR 226
            GF+
Sbjct: 179 FGFK 182


>gi|255719518|ref|XP_002556039.1| KLTH0H03630p [Lachancea thermotolerans]
 gi|238942005|emb|CAR30177.1| KLTH0H03630p [Lachancea thermotolerans]
          Length = 310

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 67/274 (24%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVD 73
           +V  R    +   WL+R   D + + A+++G R+R+A+KL+ +++K+ + +    ++++D
Sbjct: 22  RVAVRFNSSAKSRWLDRQKGDSFTREAKVQGLRSRAAFKLMHLDDKYHLFRKGSSQKVLD 81

Query: 74  LG-------------SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF----- 115
           LG             + P         +  +       +  +IL  +    ++ F     
Sbjct: 82  LGYAPGAWSQVALDRTGPNGVILGVDILPCAPPRGVSAIQGNILSKKTHELIRLFFSKHF 141

Query: 116 ---KFDFLDLDS---WEFIRQAIGG--------------------NPDLVLSDM------ 143
              + D L  D+      + Q + G                      D+++SDM      
Sbjct: 142 QLYQEDQLHKDNGYFQHMLEQELEGLIPDGSKTGLQIDRSKVEKTPIDVIVSDMYEPWPQ 201

Query: 144 ---------------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
                             T G    DH  +M LC+AA   A++++  GG F+ K + G  
Sbjct: 202 TTGFWNNITNSAYDRMANTTGVAIKDHYMSMDLCDAALVTAIDLMKPGGSFVCKLYTGKE 261

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
              +   LKK F+ V   KP ASR ES E++ + 
Sbjct: 262 DKLLESRLKKAFENVHRFKPSASRNESKELYFIG 295


>gi|330916680|ref|XP_003297518.1| hypothetical protein PTT_07944 [Pyrenophora teres f. teres 0-1]
 gi|311329755|gb|EFQ94378.1| hypothetical protein PTT_07944 [Pyrenophora teres f. teres 0-1]
          Length = 316

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 107/301 (35%), Gaps = 93/301 (30%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR---------- 69
           R    SS  W +R   D + + A+++G ++R+A+KLL++N+KH++ +  +          
Sbjct: 6   RHSSSSSTRWKSRQGRDFFAKEARVKGLKSRAAFKLLELNDKHKLFKPGQTVVDLGFAPG 65

Query: 70  --------------RIVDLGSSPGSWSQVAARITGSN-----ANNTRVVAIDILDMEPIL 110
                         R++ +   P    +  + + G+          R    D     P  
Sbjct: 66  SWSQVAVNRTLPDGRVIGIDLIPAQPPRGVSTLQGNFLSPVIQEELRAYVRDPEMGRPTK 125

Query: 111 GVKFFKFDFLDLDSWEFIRQ----------------------AIGGN------------- 135
                  D L  +  + I +                      A GG              
Sbjct: 126 QAPTMTGDGLTEEELDEIERGYIDMERHAHLEPEEPEMAEQPAEGGKHGNVSPTRLSLKE 185

Query: 136 --------PDLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAAT 166
                    D+VLSDM+ P                     T G+   DH  +M LC AA 
Sbjct: 186 RDVQNGRVVDIVLSDMSEPWEQTVGLHKKSLSDPYFRMMNTSGNAFRDHAGSMDLCMAAM 245

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            FA + L  GG FL K ++G         +K+ F KV   KP +SRAES E + +  G +
Sbjct: 246 TFAFDTLKTGGHFLCKYYKGSEEKAFETRMKRLFAKVHREKPDSSRAESKEAYFVGLGRK 305

Query: 227 K 227
           +
Sbjct: 306 E 306


>gi|254166970|ref|ZP_04873823.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
 gi|197623826|gb|EDY36388.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
          Length = 155

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%)

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           +DLG++PG WSQVA +I G      RV+A+DI  ++ +  V++ + D    ++ + I++ 
Sbjct: 1   MDLGAAPGGWSQVALKIVGREG---RVIAVDIKPVK-LRDVEYIRGDVYSDETLKRIKER 56

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+VLSDM+    G    DH R++ L E A F A  +L   G F+VK FQG   N 
Sbjct: 57  -AEKVDVVLSDMSPKISGISSWDHARSIDLAERALFIAENVLRERGHFVVKIFQGDMLNG 115

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L   +  F+ V   KP AS  ES E++++ K F+
Sbjct: 116 YLKKCRDRFEMVKVHKPKASNRESPEIYVVCKRFK 150


>gi|225561788|gb|EEH10068.1| AdoMet-dependent rRNA methyltransferase spb1 [Ajellomyces
           capsulatus G186AR]
          Length = 779

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDL 138
           SW QVAA    S    + ++ +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 7   SWCQVAAECMPS---QSLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADT 63

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VL D A         D      L   +   A E L  GG F+ K F+    N +L + K+
Sbjct: 64  VLHDGAPNVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQ 123

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP +SR  S E+F++ +GF+
Sbjct: 124 LFNTVEATKPPSSRNVSAEIFVVCQGFK 151


>gi|325091232|gb|EGC44542.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           capsulatus H88]
          Length = 779

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDL 138
           SW QVAA    S    + ++ +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 7   SWCQVAAECMPS---QSLIIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADT 63

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VL D A         D      L   +   A E L  GG F+ K F+    N +L + K+
Sbjct: 64  VLHDGAPNVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQ 123

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP +SR  S E+F++ +GF+
Sbjct: 124 LFNTVEATKPPSSRNVSAEIFVVCQGFK 151


>gi|254167682|ref|ZP_04874533.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
 gi|197623491|gb|EDY36055.1| ribosomal RNA large subunit methyltransferase J [Aciduliprofundum
           boonei T469]
          Length = 155

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
           +DLG++PG WSQVA +I G      RV+A+DI  ++ +  V++ + D    ++ + I++ 
Sbjct: 1   MDLGAAPGGWSQVALKIVGREG---RVIAVDIKPVK-LRDVEYIRGDVYSDETLKRIKER 56

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                D+VLSDM+    G    DH R++ L E A F A  +L   G F+VK FQG   N 
Sbjct: 57  -AEKVDVVLSDMSPKISGISSWDHARSIDLAERALFIAENVLRERGHFVVKIFQGDMLNA 115

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L   +  F  V   KP AS  ES E++++ K F+
Sbjct: 116 YLKKCRDRFDMVKVHKPKASNRESPEIYVVCKRFK 150


>gi|226294107|gb|EEH49527.1| AdoMet-dependent rRNA methyltransferase spb1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 776

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDL 138
           SW QVAA    S    + +V +D+  ++PI  V  F+ D         IRQ       D 
Sbjct: 7   SWCQVAAECMPS---QSLIVGVDLAPIKPIPKVITFQSDITTDKCRATIRQHFKSWKADT 63

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VL D A         D      L   +   A E L  GG F+ K F+    N +L + K+
Sbjct: 64  VLHDGAPNVGVAWVQDAFSQAELVLQSLKLATEFLAPGGTFVTKVFRSKDYNPLLWVFKQ 123

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP +SR  S E+F++  GF+
Sbjct: 124 LFTSVKATKPPSSRNVSAEIFVVCLGFK 151


>gi|254670625|emb|CBA06622.1| cell division protein [Neisseria meningitidis alpha153]
          Length = 127

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/127 (40%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTM 159
           +DIL ME I GV F + DF + D        +   P DLV+ DMA    G+   D +R+ 
Sbjct: 1   MDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQVRSF 60

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LCE A  FA + L  GG FLVK FQG    + +  +++ F  V   KP ASR  S E++
Sbjct: 61  YLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIY 120

Query: 220 LLAKGFR 226
           LL K  R
Sbjct: 121 LLGKNKR 127


>gi|240275390|gb|EER38904.1| AdoMet-dependent rRNA methyltransferase SPB1 [Ajellomyces
           capsulatus H143]
          Length = 779

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDL 138
           SW QVAA    S +    ++ +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 7   SWCQVAAECMPSQSI---IIGVDLAPIKPIPKVITFQSDITTDKCRATIRQHLKSWKADT 63

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VL D A         D      L   +   A E L  GG F+ K F+    N +L + K+
Sbjct: 64  VLHDGAPNVGVAWVQDAFSQAELVLQSLKLATEFLVPGGTFVTKVFRSKDYNPLLWVFKQ 123

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP +SR  S E+F++ +GF+
Sbjct: 124 LFNTVEATKPPSSRNVSAEIFVVCQGFK 151


>gi|258567254|ref|XP_002584371.1| AdoMet-dependent rRNA methyltransferase spb-1 [Uncinocarpus reesii
           1704]
 gi|237905817|gb|EEP80218.1| AdoMet-dependent rRNA methyltransferase spb-1 [Uncinocarpus reesii
           1704]
          Length = 768

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 4/148 (2%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDL 138
           SW QVAA    ++   + +V +D+  ++PI  V  F+ D         IRQ +     D 
Sbjct: 18  SWCQVAAECMPTD---SLIVGVDLSPIKPIPRVITFQSDITTDKCRATIRQHLKTWKADT 74

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VL D A         D      L   +   A E L  GG F+ K F+    N +L + K+
Sbjct: 75  VLHDGAPNVGTAWVQDAFSQAELVLQSLKLATEFLVPGGSFVTKVFRSKDYNPLLWVFKQ 134

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F  V   KP +SR  S E+F++ +GF+
Sbjct: 135 LFTSVEATKPPSSRNVSAEIFVVCRGFK 162


>gi|171463556|ref|YP_001797669.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193094|gb|ACB44055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 170

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 74  LGSSPGSWSQVAARI----------TGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +GS+PGSWSQ A               S   + +++AIDIL ME I  V F + DF + +
Sbjct: 1   MGSAPGSWSQYARNRLIELGKSNPKIESGKPDGQIIAIDILPMEDIADVSFIQGDFREEE 60

Query: 124 SWEFIRQAI----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
               +   +     G  DLVLSDMA    G    D  R   L E A  FA+  L   G  
Sbjct: 61  GLAALEALLPKGAEGKVDLVLSDMAPNLSGVEVADAARMAFLAEIALDFAVAHLKPEGAL 120

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+K F G   + I+   KK F+ V   KP ASRA   E+FLL +  +
Sbjct: 121 LIKCFNGSGYSQIVESFKKVFKTVASRKPKASRARFSEIFLLGRNLK 167


>gi|156043163|ref|XP_001588138.1| hypothetical protein SS1G_10584 [Sclerotinia sclerotiorum 1980]
 gi|154694972|gb|EDN94710.1| hypothetical protein SS1G_10584 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 281

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 98/251 (39%), Gaps = 53/251 (21%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS---- 82
             W  R   D + + A+++G ++R+A+KLL++  +    +   RI+ +   P        
Sbjct: 17  TRWKTRQGRDSFSRDAKVQGLKSRAAFKLLEVAVER--TKPGGRILGIDIIPAQPPKGVS 74

Query: 83  -----------QVAARITGSNANNTR----VVAIDILDMEPILGVKFFKFDFLDLDS--- 124
                      Q + +   S+ +  R    + A D  D+EP       +    D ++   
Sbjct: 75  TIQGNFLSTGVQESVKQFLSDPDRGRPRKSLFADDAEDIEPEPSYLELERHMDDNNATAG 134

Query: 125 --------WEFIRQAIGGNPDLVLSDMAYP---------------------TIGHRKIDH 155
                        Q  G   D+VLSDM  P                     T G +  DH
Sbjct: 135 DHVGKKRGRAPEEQDEGKIVDVVLSDMCEPWKQTAGFWKRSLSDPYFRMMNTTGIKFSDH 194

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
             +M LC AA  FA + L  GG F+ K +QG     +   LKK F  V   KP +SR+ES
Sbjct: 195 AGSMDLCAAALRFAFDTLKPGGHFVCKFYQGSEDKQLELQLKKLFSAVHREKPESSRSES 254

Query: 216 VEMFLLAKGFR 226
            E F +A   +
Sbjct: 255 KEAFFVALRRK 265


>gi|303286059|ref|XP_003062319.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455836|gb|EEH53138.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 231

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 29/222 (13%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           + D Y + A+  G+ ARSA+KLL+++++  IL+    ++DLG  PG+W+QVA R  G   
Sbjct: 10  LTDFYAKEAKRLGYVARSAFKLLELSDRFGILRKGAHVLDLGCHPGAWTQVACRALGHPD 69

Query: 94  NNTRVVAIDILDMEP------ILGVKFFKFDFLD--LDSWEFIRQAIGG----------- 134
               V+ +D+ + E           +F   D           +R   G            
Sbjct: 70  EGGGVLGVDLRETELGTLRHVDRRARFAVADATTLCEKRLRALRGGDGDGDGDGDGDESI 129

Query: 135 -------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL-EMLNIGGDFLVKTFQ- 185
                     +VLSDMA  T G   +D  R+  L EAA   AL E    GG  +VK  + 
Sbjct: 130 ATRRRTRPFTVVLSDMAPSTTGAADVDAARSYELAEAAVRIALGERALDGGSLVVKLLEG 189

Query: 186 -GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG   D+  +  + F +V   +P A+R +S E+FL+A+G R
Sbjct: 190 PGGGKADLQAVCARAFDRVRWYRPRATRRDSSEVFLVARGRR 231


>gi|218506332|ref|ZP_03504210.1| cell division protein [Rhizobium etli Brasil 5]
          Length = 106

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 2/106 (1%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           +EK+ IL+  +RI+DLG++PGSWSQ+AA +TGS   + RV AID L
Sbjct: 61  DEKYHILRGAKRIIDLGAAPGSWSQIAANVTGSTDEDIRVAAIDFL 106


>gi|294947674|ref|XP_002785437.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239899348|gb|EER17233.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 224

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            N+R+VDLG   G WSQVA + T    +N+ VV +D + M+ +    F + D  +  + +
Sbjct: 35  KNQRVVDLGCYSGGWSQVALKRTRVGESNSMVVGVDKVRMDALQMHTFVQGDITEPSTID 94

Query: 127 FIRQAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            +++A+G      ++LSDMA    G R  DHL    L          +L + G  ++KTF
Sbjct: 95  AVKRALGENKKAHVLLSDMAPNVTGRRADDHLEITELNIKTIDVMESVLGLKGWLVMKTF 154

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            G  T  +   L+  F KV   +P A+R ES E++L+A G+R
Sbjct: 155 YGPETQKLRTFLESRFYKVRACRPHATRPESREVYLIASGYR 196


>gi|145638914|ref|ZP_01794522.1| cell division protein [Haemophilus influenzae PittII]
 gi|145271886|gb|EDK11795.1| cell division protein [Haemophilus influenzae PittII]
          Length = 123

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M+PI+GV F + DF D +    +   +G    D+V+SDMA    G   +D  R M L E 
Sbjct: 1   MDPIVGVDFLQGDFRDENVLNALLARVGEDKVDVVMSDMAPNFSGMPSVDIPRAMYLVEL 60

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A     ++L   G F+VK FQG   ++ L  ++  F  V   KP ASR  S E++++A G
Sbjct: 61  ALDMCKQVLANKGSFVVKVFQGEGFDEYLREIRSLFNVVKVRKPEASRGRSREVYIVATG 120

Query: 225 FR 226
           ++
Sbjct: 121 YK 122


>gi|312222075|emb|CBY02015.1| hypothetical protein [Leptosphaeria maculans]
          Length = 356

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 112/310 (36%), Gaps = 93/310 (30%)

Query: 11  RGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ---- 66
           R  +  V  +    SS  W +R   D + + A+++G ++R+A+KLL++N+KH++ +    
Sbjct: 38  RSRSPAVSAQRASSSSTRWKSRQGKDFFAREARVQGLKSRAAFKLLELNKKHKLFKPGQT 97

Query: 67  --------------------SNRRIVDLGSSPGSWSQVA--------------------- 85
                                N R++ +   P    +                       
Sbjct: 98  VVDLGYAPGSWSQVAVNCTDPNGRVIGIDIIPAQPPRGVSTIQGNFLSAEIQEEVRAYVR 157

Query: 86  -------ARITGSNANNTRVVA---------IDILDMEPILGVKFFKFD--FLDLDSWEF 127
                   R   SN    R+ A         IDI     + G      +    +  + E 
Sbjct: 158 DPELGRPRRTFASNNEQGRIEAEVDEMERGYIDIERQAHLEGADAKTSEQPVDEGRTEEA 217

Query: 128 IRQAI---------GGNPDLVLSDMAYP---------------------TIGHRKIDHLR 157
            +  +         G   D+VLSDM+ P                     T G+   DH  
Sbjct: 218 SKAKMSLKERDTRQGRVVDVVLSDMSEPWDQTTGFYKKSLSDPYFRMMNTSGNGFRDHAG 277

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
           +M LC AA  FA + L  GG FL K +QG     +   LK+ F +V   KP +SR ES E
Sbjct: 278 SMDLCMAALTFAFDTLKTGGHFLCKYYQGAEEKALETKLKRLFAQVCREKPDSSRNESKE 337

Query: 218 MFLLAKGFRK 227
            + +A   ++
Sbjct: 338 AYFVALRRKE 347


>gi|15639669|ref|NP_219119.1| cell division protein (ftsJ) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025907|ref|YP_001933679.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|9910943|sp|O83687|RLME_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226705319|sp|B2S3S1|RLME_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|3322979|gb|AAC65645.1| cell division protein (ftsJ) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018482|gb|ACD71100.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060048|gb|ADD72783.1| ribosomal RNA large subunit methyltransferase J [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 200

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA----ARITGS 91
           D + ++A   G+RARS YKL  +++K+ +L    R++DLG++PGSW+Q      A  T  
Sbjct: 8   DFWAKKAAAAGYRARSVYKLAALDKKYSLLSRASRVLDLGAAPGSWTQYVLGTAAACTAV 67

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            A + + +A DI D      ++  + D    D+   +  A     DL+LSD A  T G+R
Sbjct: 68  CAVDVQPIASDIQDAR----LQRVQGDLCAADTRARV--ACNAPFDLILSDAAPRTTGNR 121

Query: 152 KIDHLRTMSLCEAATFFA-LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            +D   +   C AA   A +  L+  G  + K FQG     IL  L+ HF  V   KP A
Sbjct: 122 TVDTSASA--CLAAGVCAYVNFLSSDGGLVFKVFQGSEHLAILTHLRAHFGAVCSFKPPA 179

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E++++A+ FR
Sbjct: 180 SRPRSCELYVVARFFR 195


>gi|260900673|ref|ZP_05909068.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AQ4037]
 gi|308110887|gb|EFO48427.1| ribosomal RNA large subunit methyltransferase J [Vibrio
           parahaemolyticus AQ4037]
          Length = 122

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 3/116 (2%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WL  H +D Y   A+ +G+R+R+ +K+ +I  K ++L+    +VDLG+
Sbjct: 1   MSKQKHSASSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           +PG WSQ AA+I G   ++ +++A D+L M+PI GV F + DF D    E +   I
Sbjct: 61  APGGWSQYAAKIVG---DSGQIIACDLLPMDPIAGVSFLQGDFRDDAVLEALLDRI 113


>gi|124487850|gb|ABN12008.1| Ftsj homolog 1-like protein [Maconellicoccus hirsutus]
          Length = 206

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAY 145
           R+  + +   ++VA+D+  M P+ GV   + D  +L + + I         +LV+ D A 
Sbjct: 6   RLRKNTSVEPKIVAVDLQPMAPVPGVIQIQGDITELSTVKKILSYFENELIELVVFDGAP 65

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G   +D      L  AA      +L  GG F+ K F+G     +   L   F+ VI 
Sbjct: 66  DVTGIHDLDEFVQGQLLLAAVNITTFLLKPGGSFIGKIFRGSDNALLKSQLLLFFKDVII 125

Query: 206 VKPVASRAESVEMFLLAKGF 225
            KP +SR  S+E F++ +GF
Sbjct: 126 TKPRSSRNSSMESFVVCRGF 145


>gi|1750389|gb|AAB39254.1| FtsJ homolog [Pseudomonas aeruginosa PAO1]
          Length = 106

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 3/107 (2%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              +S+ WL  H +DPYV+ AQ + +R+R++YKLL+I EK +IL+    +VDLG+ PG W
Sbjct: 3   RSKTSQRWLKEHFDDPYVKMAQRDAYRSRASYKLLEIQEKDRILRPGMTVVDLGAGPGGW 62

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           SQV +R+ G   +  R++A DIL+M+ I  V F + DF +   +  I
Sbjct: 63  SQVTSRVIG---DRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARI 106


>gi|119480445|ref|XP_001260251.1| ribosomal RNA large subunit methyltransferase J, putative
           [Neosartorya fischeri NRRL 181]
 gi|119408405|gb|EAW18354.1| ribosomal RNA large subunit methyltransferase J, putative
           [Neosartorya fischeri NRRL 181]
          Length = 252

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W  R I D + + A ++G ++R+A+KLLQI+EK+ I +S + +VDLG +PGS
Sbjct: 25  KRHSSSKRWQARQIKDHFTRAAAVQGLKSRAAFKLLQIDEKYHIFKSGQTVVDLGYAPGS 84

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
           WSQVAA  T  N    RV+ +DI+  +P  GV   + +FL  D   ++R+ +        
Sbjct: 85  WSQVAATRTQPNG---RVLGVDIIPAQPPKGVSTIQGNFLTPDIQAYVREFLRDPCRGRP 141

Query: 141 SDMAYPTIGHRKIDHLRT 158
              +             +
Sbjct: 142 RSPSPWDGDEHNNTTFSS 159


>gi|270705618|ref|ZP_06223086.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
 gi|270315795|gb|EFA27917.1| FtsJ-like methyltransferase [Haemophilus influenzae HK1212]
          Length = 136

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
             +VDLG++PG WSQ      G      RV+A DIL+M PI+GV F + DF D +    +
Sbjct: 1   MTVVDLGAAPGGWSQYVVSQIGGKG---RVIACDILEMAPIVGVDFLQGDFRDENVLNAL 57

Query: 129 RQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
              +G    D+V+SDMA    G   +D  R M L E A     ++L   G F+VK FQG 
Sbjct: 58  LARVGEDKVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCKQVLASKGSFVVKVFQGE 117

Query: 188 TTNDILCLLKKHFQKVIHV 206
             ++ L   +  F  V   
Sbjct: 118 GFDEYLRETRSLFNVVKVR 136


>gi|71896315|ref|NP_001026096.1| putative rRNA methyltransferase 3 [Gallus gallus]
 gi|53130786|emb|CAG31722.1| hypothetical protein RCJMB04_10b6 [Gallus gallus]
          Length = 767

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGH 150
              ++ V+ +D++ ++PI  V   + D       + +R+ +     D+VL+D A      
Sbjct: 1   MPVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGAPNVGAS 60

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D     +L   A   A E L  GG F+ K F+      +L + ++ F KV   KP A
Sbjct: 61  WVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQA 120

Query: 211 SRAESVEMFLLAKGFR 226
           SR ES E+F++ +G++
Sbjct: 121 SRNESAEIFVVCQGYQ 136


>gi|295698487|ref|YP_003603142.1| ribosomal RNA large subunit methyltransferase J [Candidatus Riesia
           pediculicola USDA]
 gi|291157412|gb|ADD79857.1| ribosomal RNA large subunit methyltransferase J [Candidatus Riesia
           pediculicola USDA]
          Length = 161

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 3/158 (1%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
            R++DLGS PG WS  +++I G       +++ DI  M+PI  V FF+ D  D  +   +
Sbjct: 1   MRVIDLGSYPGGWSLYSSKIVG---RLGHIISCDIKPMDPIKNVHFFQGDVFDRSTITRL 57

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
              +     ++LSDM     G   ID  +   L E        ML   G  ++K F G  
Sbjct: 58  SDNLKFPAHVILSDMCPNITGISIIDIPKCFLLTEKVIEICKFMLIPEGSCILKMFYGKN 117

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            ++    ++  F  V   KP +S  +S E++++AK F+
Sbjct: 118 FSNQYQKIRNIFSSVKIRKPHSSIKQSNEIYIIAKRFK 155


>gi|145603067|ref|XP_362057.2| hypothetical protein MGG_04502 [Magnaporthe oryzae 70-15]
 gi|145011391|gb|EDJ96047.1| hypothetical protein MGG_04502 [Magnaporthe oryzae 70-15]
          Length = 341

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 57/261 (21%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR------------- 69
             S+  W  R   D + + A+++G ++R+A+KL++++ ++++ +  +             
Sbjct: 62  SSSNSRWKARQGRDYFAREAKVQGLKSRAAFKLIEMDSRYRLFKKGQLVVDLGYAPGSWS 121

Query: 70  -----------RIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEPILG-- 111
                      R++ +   P       A I G+          +   +D+  ++      
Sbjct: 122 QVAMERTKPGGRVLGIDVIPAQPPPGVATIQGNFLSPVVQGMVKQFVVDVHRLQARDRAR 181

Query: 112 ------------------VKFFKFDFLDLDSW-----EFIRQAIGGNPDLVLSDMAYPTI 148
                                 K  ++D++       E +R AI          +A P  
Sbjct: 182 AGGAGAAGDDAGGGEADDCVEEKQSYIDMERHSVAEEEVVRAAISAEDGNDCEGIASPRA 241

Query: 149 GHRKIDHL---RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
                          LC AA  FA + L  GG F+ K +QG    ++   L+K F KV  
Sbjct: 242 ADASKGTQDKKLVDELCHAALRFASDTLRPGGHFVCKFYQGSADKELETQLRKLFTKVHR 301

Query: 206 VKPVASRAESVEMFLLAKGFR 226
            KP +SR+ES E F +A   +
Sbjct: 302 EKPDSSRSESKEAFFVALRRK 322


>gi|322826644|gb|EFZ31154.1| ribosomal RNA methyltransferase, putative [Trypanosoma cruzi]
          Length = 268

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 92/235 (39%), Gaps = 65/235 (27%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR---IVDLGSSPGSWSQVAA- 86
           ++   D Y ++A+ EG+RARSAYKLLQ+ E+  IL  +     +VDL ++PGSWSQ+ + 
Sbjct: 31  SKDKRDIYYRKAKEEGYRARSAYKLLQLQEEFNILNRDDIQTGVVDLCAAPGSWSQLLSR 90

Query: 87  --------RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----- 133
                   R    ++   R+VA+D+ +M PI GV+  + D     +   I + I      
Sbjct: 91  HLREEVGGRTEKQSSGAPRIVAVDLQEMMPIEGVQLLQGDITSETTAREIIRLINIKEDT 150

Query: 134 ------------------------------------------------GNPDLVLSDMAY 145
                                                              DLV+ D A 
Sbjct: 151 ASVNDAYVDSEEDKSAIQTEKGGRSTARRPSLAPGERNSYSDHTNSCEKKADLVVCDGAP 210

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
              G  ++D      L  AA      +L  GG F+ K F+G  T  ++   +  F
Sbjct: 211 DVTGMHELDEYLQHHLLLAALNITTFVLRCGGTFVTKIFRGPNTPFLVAKSEVFF 265


>gi|323509097|dbj|BAJ77441.1| cgd4_1580 [Cryptosporidium parvum]
          Length = 491

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
              +++++ +D++ ++ I GV  FK D       + I   + G P D+VL D A      
Sbjct: 1   MGVSSKIIGVDLVAIKGIPGVTTFKCDITTERCRKLIFDELNGIPVDVVLHDGAPNVGTS 60

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
              D      L   +   A E+L   G F+ K F+    N +L +L + F  V   KP +
Sbjct: 61  WDKDAYIQNELVLHSAELACEILRPNGIFVTKVFRSTDYNSVLWVLSQLFNTVKATKPQS 120

Query: 211 SRAESVEMFLLAKGFR 226
           SR  S E+FL+  G++
Sbjct: 121 SRNVSAEIFLVCLGYK 136


>gi|71033419|ref|XP_766351.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353308|gb|EAN34068.1| hypothetical protein TP01_0830 [Theileria parva]
          Length = 373

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 45/207 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-------------------------VV 99
           L   + +VDL S+PGSWSQ+ +++   +    +                         +V
Sbjct: 125 LGRIKNVVDLCSAPGSWSQLLSKMVHQDHRTLKNACRKLQNEREVCKNLVEYVNIKPVIV 184

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEF--------------------IRQAIGGNPDLV 139
           AIDI  M PI GV F K D  D +  +                       + +G +  L+
Sbjct: 185 AIDIQQMAPIDGVHFLKGDITDPEILQQVLQLFIENVSRNINEAYGGECNEKLGRSAQLI 244

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
             D A    G  + D      L ++A      +L+  G F+ KTF       I   +   
Sbjct: 245 TCDGAPDISGLHETDSFLQSYLIKSALSVCFSLLDPDGCFICKTFFSSENTPIFTQVSSF 304

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F      KP ASR+ S E F++A G++
Sbjct: 305 FDYCTIFKPSASRSSSFEHFIVAVGYK 331



 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 35 NDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           D Y ++A+ EG+RARSAYKLLQI E   IL  
Sbjct: 9  RDIYYRKAKEEGFRARSAYKLLQIFESFHILYP 41


>gi|297709883|ref|XP_002831647.1| PREDICTED: LOW QUALITY PROTEIN: putative ribosomal RNA
           methyltransferase 1-like [Pongo abelii]
          Length = 186

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++++ Q+ Q   R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               +  VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A     
Sbjct: 65  GQG-SGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDAPT 123

Query: 150 HRKIDHLRTMSLCE 163
              I      +   
Sbjct: 124 QPPISPPYQEACTL 137


>gi|148702025|gb|EDL33972.1| Ftsj homolog 1 (E. coli), isoform CRA_a [Mus musculus]
          Length = 131

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+  GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIG 149
               + +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A     
Sbjct: 65  GQG-SGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDGKC 123


>gi|27545053|gb|AAO18459.1| putative FtsJ cell division protein [Oryza sativa Japonica Group]
          Length = 403

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 34/223 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KL+QI ++H+++     ++DLG +PG+W QVA +  G     
Sbjct: 9   DFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLGPLEKG 68

Query: 96  TRVVAIDILDMEPILG-----VKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             +V +D+  ++         V+    D +  +               ++LSDM     G
Sbjct: 69  GVIVGVDVKKVKVPSAHCDSRVRTVCADVMALMKQQARAMSPQERGFSVILSDMCPVVSG 128

Query: 150 HRKIDHLRTMSLCEAATFFAL----------------------------EMLNIGGDFLV 181
               D   +  L   A   A+                             +L  GG  ++
Sbjct: 129 ITTKDAAISCELGMRALSLAVGKMKAKDSDCIAILEKFQSSTEPDPDEDGILRRGGSLVI 188

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           K  +           K+ F+KV  ++P A+R+ S E+F++ +G
Sbjct: 189 KFLENEDIPGFGKFCKEKFKKVSLLRPKATRSSSREIFMVCEG 231


>gi|115456267|ref|NP_001051734.1| Os03g0822300 [Oryza sativa Japonica Group]
 gi|108711810|gb|ABF99605.1| FtsJ-like methyltransferase family protein, putative, expressed
           [Oryza sativa Japonica Group]
 gi|113550205|dbj|BAF13648.1| Os03g0822300 [Oryza sativa Japonica Group]
 gi|218194004|gb|EEC76431.1| hypothetical protein OsI_14112 [Oryza sativa Indica Group]
 gi|222626068|gb|EEE60200.1| hypothetical protein OsJ_13158 [Oryza sativa Japonica Group]
          Length = 233

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 34/225 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + AQ  G+ ARSA+KL+QI ++H+++     ++DLG +PG+W QVA +  G     
Sbjct: 9   DFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLGPLEKG 68

Query: 96  TRVVAIDILDMEPILG-----VKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
             +V +D+  ++         V+    D +  +               ++LSDM     G
Sbjct: 69  GVIVGVDVKKVKVPSAHCDSRVRTVCADVMALMKQQARAMSPQERGFSVILSDMCPVVSG 128

Query: 150 HRKIDHLRTMSLCEAATFFAL----------------------------EMLNIGGDFLV 181
               D   +  L   A   A+                             +L  GG  ++
Sbjct: 129 ITTKDAAISCELGMRALSLAVGKMKAKDSDCIAILEKFQSSTEPDPDEDGILRRGGSLVI 188

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K  +           K+ F+KV  ++P A+R+ S E+F++ +G R
Sbjct: 189 KFLENEDIPGFGKFCKEKFKKVSLLRPKATRSSSREIFMVCEGLR 233


>gi|149028399|gb|EDL83784.1| rCG22889, isoform CRA_a [Rattus norvegicus]
          Length = 131

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 2/117 (1%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ +GWRARSA+KLLQ++E+ Q+ +  +R VDL ++PGSWSQV ++  G
Sbjct: 5   SKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVG 64

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYP 146
              ++ +VVA+D+  M P+ GV   + D   L +  E I+   G   DLV+ D A  
Sbjct: 65  -GQSSGQVVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPD 120


>gi|225678023|gb|EEH16307.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 779

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 102/274 (37%), Gaps = 82/274 (29%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS---- 77
              SS+ W  R   D Y + A ++G ++R+A+KLLQIN+KH+I +  + +VDLG +    
Sbjct: 499 RHSSSKRWQARQAKDRYSREAIVKGLKSRAAFKLLQINDKHKIFKLGQSVVDLGYAPGSW 558

Query: 78  --------------------PGSWSQVAARITGS---------------NANNTRVVAID 102
                               P    +  + I G+               N N  RV  ++
Sbjct: 559 SQVAVELTQPNGRVVGVDIIPAQPPKGVSTIQGNFLSPQVQAYVQEFLRNPNRGRVQRLN 618

Query: 103 ILDMEPILG--VKFFK-----FDFLDLDSWEFIRQAIGGNP-------------DLVLSD 142
             +        +  ++            S       +GG+              D+VLSD
Sbjct: 619 HFENTDPDSQSITGYQIEESEGYIDRERSASSHITQVGGDAEDVSDTAMGDKTVDVVLSD 678

Query: 143 MAYP---------------------TIGHRKIDHLRTM--SLCEAATFFALEMLNIGGDF 179
           M+ P                     T G    DH  +M   LC AA  F+  +L  GG F
Sbjct: 679 MSAPWDQTTGFWKKSLSDPYHRMMNTSGMSFRDHAGSMKQDLCRAALEFSFNVLKTGGHF 738

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           + K +QG     +   LK+ FQ V   KP +SR+
Sbjct: 739 VCKFYQGAEDKALERQLKELFQTVHREKPESSRS 772


>gi|254583025|ref|XP_002499244.1| ZYRO0E07370p [Zygosaccharomyces rouxii]
 gi|238942818|emb|CAR30989.1| ZYRO0E07370p [Zygosaccharomyces rouxii]
          Length = 311

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ----SNRRIVDLGSS 77
              S   WL+R  ND Y + A+++G R+R+A+KL+++++K  + Q     ++R++DLG +
Sbjct: 24  RFNSQGRWLDRQSNDHYTKEAKVQGLRSRAAFKLMELDDKFHLFQGDKHKHQRVLDLGFA 83

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG+WSQVA R  G N     V+ +DIL  EP  GV   + + L   + E IR     +  
Sbjct: 84  PGAWSQVAQRRIGPNGM---VLGVDILPCEPPKGVHSIQANILSRKTHELIRLYFSRHFQ 140

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLC 162
           L  SD  +   G+ +      + L 
Sbjct: 141 LYKSDHLHEHHGYFQHRLEEQLGLI 165



 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 112 VKFFKFDFLDLDSWEFIRQAIG--GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
           V  F  D +  D +E   Q  G   N           T G    DH +++ L +AA   A
Sbjct: 184 VDRFPIDTIISDMYECWPQITGYWNNLTNAAYYRMANTSGVAIRDHYQSIDLADAALVTA 243

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +++L   G+F+ K + G         L+K FQ+V   KP +SR ES E++ +  G +
Sbjct: 244 IDLLRPRGNFVCKLYTGKEDKLFEKRLRKVFQRVNRFKPASSRGESKELYFIGLGKK 300


>gi|38048043|gb|AAR09924.1| similar to Drosophila melanogaster CG5220 [Drosophila yakuba]
          Length = 191

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG--NPDLVLSDMAYPTI 148
                 +++A+D+  M PI G+   + D     + E I    GG     LV+ D A    
Sbjct: 13  DEKAAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDVT 72

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G  ++D      L  AA   A  +L  GG F+ K F+G  T+ +   ++  F+K    KP
Sbjct: 73  GVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKP 132

Query: 209 VASRAESVEMFLLAKGF 225
            +SR  S+E F++   F
Sbjct: 133 PSSRPSSIEAFVVCSDF 149


>gi|84998454|ref|XP_953948.1| ribosomal RNA methyltransferase (FtsJ ) [Theileria annulata]
 gi|65304946|emb|CAI73271.1| ribosomal RNA methyltransferase (FtsJ homologue), putative
           [Theileria annulata]
          Length = 359

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 82/207 (39%), Gaps = 45/207 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR-------------------------VV 99
           L   + +VDL S+PGSWSQ+ +++   +    +                         +V
Sbjct: 115 LGRIKNVVDLCSAPGSWSQLLSKMVHEDYETLKNACKKLQTQQEVCKNLVEYVNIKPVIV 174

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEF------------IRQAIGG--------NPDLV 139
           AIDI  M PI GV+F K D  D +  +             I QA GG        N  L+
Sbjct: 175 AIDIQQMAPIEGVRFLKGDITDPEILKEVLQLFIENVSRNINQAYGGEYDEKLRRNAQLI 234

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
             D A    G  + D      L ++A      +L+  G F+ KTF       I   +   
Sbjct: 235 TCDGAPDISGLHETDSFLQSYLIKSALSVCFSLLDPDGCFICKTFFSSENTPIFTQVSSF 294

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F      KP ASR+ S E F++A G++
Sbjct: 295 FDYCTIFKPSASRSSSFEHFIVAVGYK 321



 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 35 NDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
           D Y ++A+ EG+RARSAYKLLQI E   IL  
Sbjct: 9  RDIYYRKAKEEGFRARSAYKLLQIFESFHILYP 41


>gi|90415764|ref|ZP_01223698.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2207]
 gi|90333087|gb|EAS48257.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2207]
          Length = 110

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 3/112 (2%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            +  +R W+ +H+ DPYVQ +Q +G+R+R++YKLL+I EK ++++    +VDLG++PG W
Sbjct: 2   AKSKNRSWIKQHVKDPYVQMSQKDGYRSRASYKLLEIIEKDRLIRPGMTVVDLGAAPGGW 61

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           SQVA  + G      RV A+D+L M+ I GV F   DF + +    +   I 
Sbjct: 62  SQVAMDLVGHEG---RVHALDLLPMDGIAGVDFILGDFTEDEILHELLALID 110


>gi|322701264|gb|EFY93014.1| cell division protein ftsj, putative [Metarhizium acridum CQMa 102]
          Length = 257

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 57/239 (23%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
            T K   R    +S  W  R   D + + A+++G ++R+A+KLL+++ K+++ +  + +V
Sbjct: 29  FTPKADVRWSSSNS-RWKQRQGRDVFSREAKVQGLKSRAAFKLLEMDSKYRLFKPGQTVV 87

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DL +                  + RV+ ID++  +P  GV  F+ DFL       +R+ I
Sbjct: 88  DLVAQ------------ERTRPHGRVIGIDLIPAQPPRGVATFQGDFLSPSVQRLVREFI 135

Query: 133 G-------------------------------------GNPDLVLSDMAYPTIGHRKIDH 155
                                                  + D+VLSDM+ P         
Sbjct: 136 ARTGRPVEKVERGDDGETMSYIDRERRASEEREGNGTSASVDVVLSDMSAP-----WNQS 190

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTF-QGGTTNDILCLLKKHFQKVIHVKPVASRA 213
            R MS      +  L M   G  F       G     +   LK+ F KV   KP +SR+
Sbjct: 191 FRYMSNTLTNPYRRL-MNTSGVAFRDHAGSMGSEDKKLEARLKRMFAKVFREKPESSRS 248


>gi|255075125|ref|XP_002501237.1| predicted protein [Micromonas sp. RCC299]
 gi|226516501|gb|ACO62495.1| predicted protein [Micromonas sp. RCC299]
          Length = 238

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 45/236 (19%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           +R   D + + A+  G+ ARSA KL +I ++  +++    ++DLG  PG+W+QVA+    
Sbjct: 3   SRKTADFFAREAKKLGYAARSALKLKEIQDRFGVMRPGDAVLDLGCHPGAWTQVASERGA 62

Query: 91  SN--ANNTRVVAIDILDMEPILGVKFFK-FDFLDLD--SWEFIRQAIGGNPD-------L 138
            +    +      D L              D  DLD  +   +  + G +P         
Sbjct: 63  GSVVGVDLTTTRSDALGPRVDPRRTTLTVADVFDLDPPALRALCGSGGASPASRSRPFAA 122

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE--------------------------- 171
           VLSDMA  T G    D   +  L E A   AL                            
Sbjct: 123 VLSDMAPSTSGDGVKDAALSYELAEQAVRLALGARALAVLDGDDDDDDREGDRDGDGHLE 182

Query: 172 ----MLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
               +L  GG  +VK  +G  G  +D+  + K  F+ V   +P A+R ES E+FL+
Sbjct: 183 HDPGVLRKGGSLVVKLLEGPGGGRDDLQRVCKPQFESVKWFRPRATRRESREVFLV 238


>gi|148236585|ref|NP_001080816.1| FtsJ homolog 1 [Xenopus laevis]
 gi|29124411|gb|AAH49003.1| Ftsj1-prov protein [Xenopus laevis]
          Length = 130

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 4/126 (3%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
           ++   D Y + A+ EGWRARSA+KLLQ++E++++ Q  +R VDL ++PGSWSQV +R   
Sbjct: 5   SKDKRDIYYRLAKEEGWRARSAFKLLQLDEEYRLFQGVQRAVDLCAAPGSWSQVLSRKLR 64

Query: 91  SNANNTR---VVAIDILDMEPILGVKFFKFDFLDLDS-WEFIRQAIGGNPDLVLSDMAYP 146
                +R   +VA+D+  M P+ GV   + D   + +  E I    G   DLV+ D A  
Sbjct: 65  GGDEQSRGVKIVAVDLQAMAPLPGVIQIQGDITKVSTAHEIIGHFEGQPADLVVCDGAPD 124

Query: 147 TIGHRK 152
                 
Sbjct: 125 GNVENS 130


>gi|207345420|gb|EDZ72247.1| YGL136Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 182

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN---RRIV 72
           ++  R    S   WLNR + DPY + A+++  R+R+A+KL+QI++K+++   N   +RI+
Sbjct: 18  RIHVRYNSNSQNRWLNRQLKDPYTKEAKVQNLRSRAAFKLMQIDDKYRLFSKNRTDQRIL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG +PG+WSQVA + +  N+    ++ +DIL  EP  GV   + + L   + + IR   
Sbjct: 78  DLGYAPGAWSQVARQRSSPNSM---ILGVDILPCEPPHGVNSIQANILAKRTHDLIRLFF 134

Query: 133 GGNPDLVLSDMAYPTIGH 150
             +  L   D  +   G+
Sbjct: 135 SKHFQLNRHDDLHKDHGY 152


>gi|134057568|emb|CAK37978.1| unnamed protein product [Aspergillus niger]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 47/192 (24%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS 80
               SS+ W  R + D + + A ++G ++R+A+KLLQI+EK+ I +S + +VDLG +PGS
Sbjct: 25  KRFSSSKRWQARQLKDRFTREAAVQGLKSRAAFKLLQIDEKYHIFESGQTVVDLGYAPGS 84

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD----SWEFIRQAIGGNP 136
           WSQVA         + RV+ +DI+  +P  GV   + +FLD +      EF+R A  G P
Sbjct: 85  WSQVAV---ARTQPHGRVLGVDIIPAQPPKGVSTIQGNFLDPNIQAYVREFVRDANRGRP 141

Query: 137 D---------------------------------------LVLSDMAYPTIGHRKIDHLR 157
                                                   +VLSDM   T G    DH  
Sbjct: 142 HPPSTILDAEYDDTQLKSDANASSDKQTDPKQWDRNYSVDVVLSDMMMNTSGISFKDHAG 201

Query: 158 TMSLCEAATFFA 169
           +M LC +A  F+
Sbjct: 202 SM-LCSSAKKFS 212


>gi|302914138|ref|XP_003051077.1| hypothetical protein NECHADRAFT_41834 [Nectria haematococca mpVI
           77-13-4]
 gi|256732015|gb|EEU45364.1| hypothetical protein NECHADRAFT_41834 [Nectria haematococca mpVI
           77-13-4]
          Length = 309

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 88/251 (35%), Gaps = 60/251 (23%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSS---- 77
             S   W  R   D Y + A+++G ++R+A+KLL+++ K+++ ++  + +VDLG +    
Sbjct: 28  SSSGSRWKQRQGRDAYARNAKVQGLKSRAAFKLLEMDAKYRLFKNNGQTVVDLGYAPGSW 87

Query: 78  --------------------PGSWSQVAARITG-----SNANNTRVVAIDILDMEPILGV 112
                               P    Q  A   G     +     +   +D     P L  
Sbjct: 88  SQVAVDRTRPHGRVIGIDLIPAQPPQGVATFQGDFLSPNVQGMVKNFILDTHKRPPPLQH 147

Query: 113 KFFKFD--------FLDLDSWEFIRQAIGGNPDLVLSDMAY------------------- 145
           +    D               +  R A   +     SD                      
Sbjct: 148 EAETSDSDEVEVSEIDRPSYIDMERHASSESGSPEASDDMSAPWDQTSGFYVNSLSNPYN 207

Query: 146 ---PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
               T G+   DH  +M LC AA  FA + L  GG F+ K +QG    +    LK  F K
Sbjct: 208 RLMNTSGNAFRDHAGSMDLCAAALQFASDTLKSGGHFVCKFYQGPEDKEFEKKLKTLFVK 267

Query: 203 VIHVKPVASRA 213
           V   KP +SR 
Sbjct: 268 VFREKPESSRK 278


>gi|323446286|gb|EGB02505.1| hypothetical protein AURANDRAFT_35192 [Aureococcus anophagefferens]
          Length = 156

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR-----RIVDLGSSPGSWSQVA 85
           +R   D Y + A+   +RAR+A+KLLQ++    IL +       R+ DL ++PG WSQV 
Sbjct: 5   SRDKRDIYYRLAKTSNYRARAAFKLLQLDATLGILSTATTHDRLRVADLCAAPGGWSQVV 64

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD----LVLS 141
           A          RVVA+D+  + PI GV+    D     +   +  A+GG  D    +VL 
Sbjct: 65  AERRPG----ARVVAVDLKPIAPIAGVEMVLGDITAAATAREVVDALGGGADARRGVVLC 120

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D A   IG   +D      L   A   A  +L  GG
Sbjct: 121 DGAPDVIGLNDVDEHLQNELVRKAWSMAEAILARGG 156


>gi|225717424|gb|ACO14558.1| ribosomal RNA methyltransferase CG11447 [Caligus clemensi]
          Length = 171

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 6/123 (4%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W+ R   D YV++AQ EG+RARSAYKLL+INEK +IL+    +++ G +PGSW+QV 
Sbjct: 48  SSSWIRRQSKDIYVKKAQSEGYRARSAYKLLEINEKFKILRPKMTVMECGGAPGSWTQVL 107

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAIGGN-PDLVLSDM 143
            +   S      V++ D+LD +P+       + DF    + + I   +  +  DLVLSDM
Sbjct: 108 TQKVHSGE----VISCDLLDYDPVDHAIILPQSDFTLPQTQDIILGHLKADGFDLVLSDM 163

Query: 144 AYP 146
           A  
Sbjct: 164 APK 166


>gi|298711156|emb|CBJ32381.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 405

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           ++     D  +  GS      R+  +     R+VA+D+  M PI GVK  + D   + + 
Sbjct: 152 RAGVDCADTQTGAGSEG----RVKDTEEEEVRIVAVDLQGMAPIEGVKQLQGDITSVKTA 207

Query: 126 EFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           E I     GG  +LV+ D A    G   ID      L  AA      +L+ GG F+ K F
Sbjct: 208 EAIIDHFRGGLAELVVCDGAPDVTGLHDIDEYLQAQLLLAALNITAHVLSPGGTFVAKIF 267

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           +G  ++ +   L+  F++V   KP +SR+ S+E F++ +
Sbjct: 268 RGRDSSLLYSQLRLLFERVTIAKPRSSRSSSIEAFVVCR 306



 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-AARITG 90
           +   D + ++A+  G+RARSA+KLLQ++E+  + +   + VDL ++PGSWSQV A+++ G
Sbjct: 6   KDKRDMFYRKAKEVGFRARSAFKLLQLDEEFGLFEGVTKAVDLCAAPGSWSQVLASKLLG 65

Query: 91  SNANNTRVVAI 101
              +       
Sbjct: 66  DKRDTPAAAGC 76


>gi|119607628|gb|EAW87222.1| hCG17134, isoform CRA_a [Homo sapiens]
          Length = 162

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFK-FDFLDLDSWEFIRQAI-GGNPDLVLSDMAY 145
           +   ++    V+ +D+L + P+ G  F    D  D  + + I + + G   D++LSDMA 
Sbjct: 14  VCDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAP 73

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              G R +DH R +SLC        ++L  GG FL KT+ G  +  +   L + FQ V  
Sbjct: 74  NATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRI 133

Query: 206 VKPVASRAESVEMFLLAKGF 225
           +KP ASR ES E++ LA  +
Sbjct: 134 IKPEASRKESSEVYFLATQY 153


>gi|328858221|gb|EGG07334.1| hypothetical protein MELLADRAFT_28887 [Melampsora larici-populina
           98AG31]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 45/236 (19%)

Query: 23  QGSSRDWLNRHINDPYVQ-RAQLEG---WRARSAYKLLQINEKHQILQS----NRRIVDL 74
             SS+ +L R   D Y + +    G   + ARSA+KL  +++  ++          ++DL
Sbjct: 2   SSSSKRFLRRAQTDTYGKTKCSNRGEKVYVARSAHKLNSLDQTLKLFSKHYHGTMNVLDL 61

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK--------FFKFDFLDLDSWE 126
           G+SPG W++V             ++A D+L +   + V         F + DFL+ +   
Sbjct: 62  GASPGGWTEV-------------LIACDLLPLSRSIYVDVPSNTKLSFIQGDFLNQEIQY 108

Query: 127 FIRQAIGGN---------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI-- 175
            I +A+  N         P ++LSD+     G    D   ++ LC + +  A  +L    
Sbjct: 109 KIIEALQSNLQPKPNPSIPTIILSDLLGSMSGIPIKDAQNSLDLCLSVSQLAQTVLQETQ 168

Query: 176 -----GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                    ++K  Q G T+++   LK +++ V  +KP+ASR+ES E + +A+  +
Sbjct: 169 IEGHEDDTLVIKHIQSGLTDELRNHLKSNWKSVRWIKPLASRSESREGYFIARQRK 224


>gi|145484697|ref|XP_001428358.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395443|emb|CAK60960.1| unnamed protein product [Paramecium tetraurelia]
          Length = 282

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDM 143
            +      + + R+V++D+ +M P+  V   + D     + + I +       D+++ D 
Sbjct: 85  LSEKNYLPSESCRIVSVDLQEMAPLDHVTQIQGDITKKTTVDEILKKFNYQRADIIVCDG 144

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   ID+     L  AA    L  L   G F+ K F+G     +    K  F +V
Sbjct: 145 APDVTGFHDIDYYIQSQLIVAALNICLMTLRENGIFVAKIFKGSDIKLLYSQFKLFFNQV 204

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
             +KP +SRA SVE F++   +
Sbjct: 205 YFMKPKSSRASSVEYFIICLQY 226


>gi|327348578|gb|EGE77435.1| tRNA (Uridine-2'-O-)-methyltransferase TRM7 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 396

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 23/151 (15%)

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----------------- 135
             N ++VAID+  M P+ G+   K D     +   + +A+  +                 
Sbjct: 134 RKNVKIVAIDLQPMTPLEGITTLKADITHPSTIPLLLKALDPDDYTHDTSSTNNTTTKTP 193

Query: 136 ------PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
                  DLVLSD A    G   +D      L  AA   A+ +L  GG F+ K F+G   
Sbjct: 194 HHHPHPVDLVLSDGAPDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDV 253

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
           + I   LK  F+KV   KP +SRA S+E F+
Sbjct: 254 DLIYAQLKTVFEKVSVAKPRSSRASSLEAFV 284



 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 31 NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVA 85
          ++   D Y + A+ + WRARSA+KL+QI+E+  +       S  R+VDL ++PGSWSQV 
Sbjct: 5  SKDKRDAYYRLAKEQNWRARSAFKLIQIDEQFDLFAHSDPDSVTRVVDLCAAPGSWSQVL 64

Query: 86 ARITGSNANNT 96
          +R+     +  
Sbjct: 65 SRVLIKGESFG 75


>gi|300708035|ref|XP_002996206.1| hypothetical protein NCER_100740 [Nosema ceranae BRL01]
 gi|239605486|gb|EEQ82535.1| hypothetical protein NCER_100740 [Nosema ceranae BRL01]
          Length = 171

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 25  SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
           S    L +   D Y   A+ +G+RARSA+KLLQ+N+K+  L+  + ++DL ++PG W QV
Sbjct: 2   SKNRSLGKQRLDKYYNLAKEKGYRARSAFKLLQLNKKYGFLKDAKILIDLCAAPGGWLQV 61

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----NPDLVL 140
           AA+         +++ ID+  ++ I  V+ F  D    +  + +   +        D++L
Sbjct: 62  AAQ---EMPRPRKIIGIDLDPIKYIGDVETFVCDITSDECRKRLYGMLSDTEFRQADVIL 118

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
            D A       + D      L   +   +
Sbjct: 119 HDGAPNVGTSWENDAFNQNLLVFYSLQLS 147


>gi|189201217|ref|XP_001936945.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187984044|gb|EDU49532.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 306

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN------------PDLVL 140
               R+VAID+  M P+ GV   + D     +   + +A+  +             DLV+
Sbjct: 31  REGVRIVAIDLQPMSPLEGVTTMRADITHPSTIPLMLKALDPDTYDPNATTGSSPVDLVI 90

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           SD A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  F
Sbjct: 91  SDGAPDVTGLHDLDIYVQSQLLWAALNLALCVLKPGGKFVAKIFRGKDVDLLFAQLKIVF 150

Query: 201 QKVIHVKPVASRAESVEMFLLAKGF 225
           ++V   KP +SRA S+E F++ +GF
Sbjct: 151 ERVRVAKPRSSRASSIEAFVVCEGF 175


>gi|322704731|gb|EFY96323.1| cell division protein ftsj, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 288

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 91/251 (36%), Gaps = 72/251 (28%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQ----------------INEKHQILQSNRRIVD 73
             R + D + + A+++G ++R+A+KLL+                ++ KH++ +  + IVD
Sbjct: 45  KQRQVRDAFSRGAKVQGLKSRAAFKLLEVIYTAPPTNISSNALQMDSKHRLFKPGQTIVD 104

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           L +                  + RV+ ID++  +P  GV  F+ DFL       +R+ I 
Sbjct: 105 LVAQ------------ERTRPHGRVIGIDLIPAQPPRGVATFQGDFLSPGVQRLVREFIA 152

Query: 134 -------------------------------------GNPDLVLSDMAYPTIGHRKIDHL 156
                                                 + D+VLSDM+ P          
Sbjct: 153 RTGRPVEKVERGEEGETMSYIDRERRASEEREGNGTSASVDVVLSDMSAP-----WDQTS 207

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTF-QGGTTNDILCLLKKHFQKVIHVKPVASRAES 215
             MS      +  L M   G  F       G         LKK F KV   KP +SR+ES
Sbjct: 208 GYMSNTLTNPYRRL-MNTSGVAFRDHAGSMGSEDKKFEARLKKMFAKVFREKPESSRSES 266

Query: 216 VEMFLLAKGFR 226
            E + +A   R
Sbjct: 267 KEAYFIALKRR 277


>gi|68171915|ref|ZP_00545234.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67998660|gb|EAM85393.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 131

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
           M+ I  V F + D ++ D      +      D++LSDMA    G++++DH   ++LCE +
Sbjct: 1   MDAIPNVIFIQCDIIN-DIELLSDKFHNKKFDVILSDMAPKACGNKQVDHANIINLCEIS 59

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +      G F+ K  QG    +    +K +FQ V + KP ASR +S EM+L+  GF
Sbjct: 60  LDIVVRFTRENGVFITKILQGEYEKEFYQSMKTYFQSVKYFKPKASRKDSSEMYLVGLGF 119

Query: 226 RK 227
           +K
Sbjct: 120 KK 121


>gi|115380659|ref|ZP_01467590.1| ribosomal RNA large subunit methyltransferase J [Stigmatella
           aurantiaca DW4/3-1]
 gi|115362334|gb|EAU61638.1| ribosomal RNA large subunit methyltransferase J [Stigmatella
           aurantiaca DW4/3-1]
          Length = 165

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 5/157 (3%)

Query: 72  VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEFIR 129
           +DLG++PG + Q+ A   G    + RV+ +DI+ + P     V     D L  D    +R
Sbjct: 2   LDLGAAPGGFLQILADTVG---LSGRVIGVDIVAIRPFPQKHVTTAVLDVLADDFDARLR 58

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
               G  D V+SDMA  T G +  D  R++ L   A   A+E    G  F+ K F GG  
Sbjct: 59  ALYEGPLDAVISDMAPKTSGIKATDEARSLRLAGKALEVAVERGRPGSSFVAKLFMGGDF 118

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                 ++  + +V  V+P A+R  S+E++L+    +
Sbjct: 119 EAFRDQVRASYDEVKVVRPEATRGASMEVYLVGLRLK 155


>gi|331232420|ref|XP_003328872.1| cell division protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307862|gb|EFP84453.1| cell division protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 332

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 116/308 (37%), Gaps = 88/308 (28%)

Query: 7   SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQ---RAQ-LEGWRARSAYKLLQINEKH 62
            S RR    ++      G S+ +L R   DPY +   RA+    + ARSA+KL+Q++++ 
Sbjct: 21  GSCRRFSIVRLGG-EQGGQSKQFLRRAETDPYGKTKSRARGEPTYVARSAHKLIQLDQQF 79

Query: 63  QIL--------QSNRRIVDLGSSPGSWSQVAARI-------------------------- 88
           +I         ++  R++DLG++PG WS+V                              
Sbjct: 80  RIFPTPARSSPRTGFRVLDLGAAPGGWSEVVLERLAHLHSHPAISSSPSPSAPSETPPSN 139

Query: 89  -----TGSNANNTRVVAIDILDMEPI------LGVKF--FKFDFLDLDSWEFIRQAI--- 132
                  S  +  R+VA D+L + P         V F   + DF+D      I + +   
Sbjct: 140 HNLRARSSVNHQHRLVACDLLPLHPSIAPKVSKNVDFHAIQGDFMDTQVRAKIVELLFDS 199

Query: 133 --------------------------GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
                                          ++LSDM +   G    D   ++ L     
Sbjct: 200 TAIAHDHDNQGLVPEESRQEKETNDRRRTTTIILSDMLHSMTGIPTRDSQNSLDLSVTVA 259

Query: 167 FFALEML--NIGG-----DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
             A +++  N GG       ++K  Q   T+     L   +  V  VKP+ASR+ES E +
Sbjct: 260 DLARDLIPPNPGGSRASDTLILKHLQSEFTHQFRDRLLAEWSLVKWVKPLASRSESREGY 319

Query: 220 LLAKGFRK 227
            + +G RK
Sbjct: 320 FVTRGRRK 327


>gi|145539966|ref|XP_001455673.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423481|emb|CAK88276.1| unnamed protein product [Paramecium tetraurelia]
          Length = 437

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPILGV 112
           L ++N +  +L+    +++LGS  G W++   +  GSN  + +V AID   L      GV
Sbjct: 14  LTELNARFGLLKKGMSVIELGSGSGHWTETLRKTIGSNREDPKVFAIDEVQLPKRCRDGV 73

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            F + D    ++   +++ +   P DL++S++   +   R ID+   + L   A   AL+
Sbjct: 74  IFIQGDVDKKETIMKLQKQLDLKPVDLIISNLESRSQNDRDIDNFEQIRLNRIALNIALK 133

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            L  GG  L+K  +G         +   F++ I V+P  ++ + ++ + L  GF++
Sbjct: 134 TLKTGGTMLIKAREGLPEEQNFKFINLFFRETIKVRPQTAKLDFLKHYYLGLGFKQ 189


>gi|215401335|ref|YP_002332639.1| hypothetical protein HaMNV_gp103 [Helicoverpa armigera multiple
           nucleopolyhedrovirus]
 gi|198448835|gb|ACH88625.1| hypothetical protein HaMNV_gp103 [Helicoverpa armigera multiple
           nucleopolyhedrovirus]
          Length = 271

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------TGSNANNTRVVAIDI 103
           R  YKL +I+EK  + +     VDL   PG +++    +       G +  N      D 
Sbjct: 39  RCYYKLKEIDEKFNVCRDVDTFVDLCGGPGQFAKYLFTMNPDCVGYGVSLRNDCDYTFDH 98

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                I G  F   D  D +    +        +LV++D A+   G        T+SL  
Sbjct: 99  EHFRKIYGC-FDSGDIFDANVMFELMYFCRKQCNLVVADGAFDVSGRENDQETLTLSLLR 157

Query: 164 AATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +  LE+L  GG+ ++K F      T  +L     +F +    KP  SRA + E +L+
Sbjct: 158 KECYIILEVLRTGGNCVLKIFDTFNRATISLLQSFIANFNEFYFYKPSHSRAANSEKYLV 217

Query: 222 AKG 224
            KG
Sbjct: 218 CKG 220


>gi|258575121|ref|XP_002541742.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Uncinocarpus reesii
           1704]
 gi|237902008|gb|EEP76409.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Uncinocarpus reesii
           1704]
          Length = 245

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 22/142 (15%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGN----------------------PDLVLSDM 143
           M P+ G+   K D     +   + +A+  +                       DLVLSD 
Sbjct: 1   MAPLEGIATLKADITHPSTIPLLLKALDPDLYDETDSENTNTPSPSKPHSHPVDLVLSDG 60

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A    G   +D      L  AA   A+ +L  GG F+ K F+G   + I   LK  F++V
Sbjct: 61  APDVTGLHDLDIYIQSQLLYAALNLAIGVLRPGGKFVAKIFRGRDVDLIYAQLKTVFERV 120

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
              KP +SRA S+E F++ +GF
Sbjct: 121 SVAKPRSSRASSLEAFVVCEGF 142


>gi|22549506|ref|NP_689284.1| hypothetical protein [Mamestra configurata NPV-B]
 gi|22476685|gb|AAM95091.1| hypothetical protein [Mamestra configurata NPV-B]
          Length = 275

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------TGSNANNTRVVAIDI 103
           R  YKL +I+EK  + +     VDL   PG +++    +       G +  N      D 
Sbjct: 39  RCYYKLKEIDEKFNVCRDVDTFVDLCGGPGQFAKYVFMMNPDCVGYGVSLRNDCDYTFDH 98

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                I G  F   D  D +    +        +LV++D A+   G        T+SL  
Sbjct: 99  EHFRKIYGC-FDSGDIFDANVMFELMYFCRKQCNLVVADGAFDVSGRENDQETLTLSLLR 157

Query: 164 AATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +  LE+L  GG+ ++K F      T  +L     +F +    KP  SRA + E +L+
Sbjct: 158 KECYIILEVLRTGGNCVLKIFDTFNRATISLLQSFIANFNEFYFYKPTHSRAANSEKYLV 217

Query: 222 AKG 224
            KG
Sbjct: 218 CKG 220


>gi|296419711|ref|XP_002839439.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635592|emb|CAZ83630.1| unnamed protein product [Tuber melanosporum]
          Length = 227

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M P+ GV   + D     +   + + +G  P DLV+SD A    G   +D      L  A
Sbjct: 1   MTPLPGVTTLQADITHPSTLPLLLRHLGNKPADLVISDGAPDVTGLHDLDEYIQSQLLLA 60

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A   A  +L  GG F+ K F+G     +   L+  F +V   KP +SR  S+E F++ +G
Sbjct: 61  ALNLATCVLKPGGGFVAKIFRGRDVAIVFAQLRCLFDRVTCAKPRSSRGSSIEAFVVCEG 120

Query: 225 F 225
           +
Sbjct: 121 Y 121


>gi|326928915|ref|XP_003210618.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like, partial
           [Meleagris gallopavo]
          Length = 147

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 91  SNANNTRVVAIDILDMEPILGVKFF-KFDFLDLDSWEFIRQAI-GGNPDLVLSDMAYPTI 148
             A    V+ +D+L + P+ G  F  + D  D  +   I+  +     D++LSDMA    
Sbjct: 8   PAAPTGFVIGVDLLRISPLEGAVFLSQVDITDPRTQRAIQNLLPAEKVDVILSDMAPNAT 67

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
           G +++DH + + LC      +  +L   G  L K + G  +  +   LK+ FQ V  +KP
Sbjct: 68  GIKELDHQKLIGLCLGLVNLSESILKPKGTILCKFWDGHESRVLQNKLKEQFQNVRTIKP 127

Query: 209 VASRAESVEMFLLAKGFR 226
            +SR +S E + LA+ ++
Sbjct: 128 QSSRKDSSESYYLARLYK 145


>gi|289615348|emb|CBI57934.1| unnamed protein product [Sordaria macrospora]
          Length = 328

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-------------PDLV 139
               ++V+ID+  + P+ G+   + D     +   + +A+  +              DLV
Sbjct: 73  REQVKIVSIDLQPISPLPGIITLRADITHPATVPLLLKALDPDFDPSTMNQQASHPVDLV 132

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
           +SD A    G   +D      L  AA   AL +L  GG F+ K F+G   + +   LK  
Sbjct: 133 ISDGAPDVTGLHDLDIYVQSQLLFAALNLALCVLKPGGKFVAKIFRGRNVDLLYAQLKVF 192

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFR 226
           F+KV   KP +SRA SVE F++   F+
Sbjct: 193 FEKVYVAKPRSSRASSVEAFIVCINFQ 219


>gi|164659960|ref|XP_001731104.1| hypothetical protein MGL_2103 [Malassezia globosa CBS 7966]
 gi|159105002|gb|EDP43890.1| hypothetical protein MGL_2103 [Malassezia globosa CBS 7966]
          Length = 172

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%)

Query: 28  DWLNRHINDPYVQRAQLEG--WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
            +L+R  +D +V+  + +G  + +RSAYKL+Q++ K+   Q  R +VDLG++PG WSQ  
Sbjct: 28  KYLSRQRHDQFVRDRKADGTGYVSRSAYKLVQLSTKYPFFQPGRVVVDLGAAPGGWSQAV 87

Query: 86  ARITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            +         RV A+D+L ++  +  + F + DF D      +   IG + D+VLSDM 
Sbjct: 88  LQQCPK----ARVYALDLLPLQTSLPNLTFMRGDFRDTQVRTSLSSLIGQDVDVVLSDMM 143

Query: 145 YPTIGHRKIDHLRTMSLCEAAT 166
             T G+   D   ++ LC AA 
Sbjct: 144 ANTSGNSIRDTQASLDLCMAAF 165


>gi|125860210|ref|YP_001036380.1| putative methyltransferase [Spodoptera frugiperda MNPV]
 gi|120969355|gb|ABM45798.1| putative methyltransferase [Spodoptera frugiperda MNPV]
 gi|167833769|gb|ACA02645.1| MET [Spodoptera frugiperda MNPV]
 gi|319997423|gb|ADV91321.1| methyltransferase [Spodoptera frugiperda MNPV]
          Length = 266

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 15/204 (7%)

Query: 35  NDPYVQRAQL--EG---WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           ++ +V+ A+   EG    R R   K+  I+EK+ + ++    +DL   PG +++    + 
Sbjct: 19  DEHHVRLARQFIEGGVRIRNRCYLKIKDIDEKYNVCKNVETFLDLCGGPGQFAKYVFDVN 78

Query: 90  GSNANNTRVVAIDILD-------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
               +   V   +  D          + G  F   D  D +    +     G  DLV++D
Sbjct: 79  NHECSGYGVTLRNHCDYTFDHVLFRKMYGC-FDTGDIFDANVVFELMYFCRGKCDLVVAD 137

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHF 200
            A+   G+       +  L        L  L  GG+ ++K F    ++   +L     HF
Sbjct: 138 GAFDVKGNENNQESLSYPLIAKECMIILGALRTGGNCVLKIFDTFESSTISLLQEFISHF 197

Query: 201 QKVIHVKPVASRAESVEMFLLAKG 224
            +    KP+ASRA + E +L+ KG
Sbjct: 198 DEHYLYKPLASRAANAEKYLVCKG 221


>gi|50554505|ref|XP_504661.1| YALI0E31933p [Yarrowia lipolytica]
 gi|49650530|emb|CAG80265.1| YALI0E31933p [Yarrowia lipolytica]
          Length = 245

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           V+ +     S  W  R + D +V  A+ +G+R+R+AYKL +++   ++ +    +VDLG 
Sbjct: 19  VRGKKHDARS-RWEMRQMKDKHVAMAKADGFRSRAAYKLQELDSMFRLFKPGMTVVDLGF 77

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
           +PG+WSQVAA+         RV+ +DIL   P  GV   + +FL  ++   +++ +  + 
Sbjct: 78  APGAWSQVAAQRVRPGG---RVIGVDILPCIPPPGVSSIQGNFLSKETQNELKRVLAVSA 134

Query: 137 DLVLSDM 143
             V  D 
Sbjct: 135 MGVPKDK 141


>gi|215401486|ref|YP_002332790.1| hypothetical protein SlnV2_gp092 [Spodoptera litura
           nucleopolyhedrovirus II]
 gi|209484027|gb|ACI47460.1| unknown [Spodoptera litura nucleopolyhedrovirus II]
          Length = 294

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 9/185 (4%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------TGSNANNTRVVAI 101
           R R   K+  I+EK Q+ ++    +DL   PG +++    +       G+   N    A 
Sbjct: 44  RNRCYLKMRDIDEKFQLCRNVDVFLDLCGGPGQFAKYIFDVNADCLGYGATLRNDCDYAF 103

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           D  +   + G  F   D  D +    +        DLV++D A+   G        + +L
Sbjct: 104 DHPNFRKMYGC-FDTGDIFDANVLFELMYFCKNKCDLVVADGAFDVRGDENNQETLSFNL 162

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMF 219
                   ++ L  GG+ ++K F     +   +L     HF +    KP  SRA + E +
Sbjct: 163 IRKECSIIVDALRAGGNCVLKIFDTFERSTISLLEDFVSHFTEHTVYKPPHSRAANSEKY 222

Query: 220 LLAKG 224
           L+ KG
Sbjct: 223 LVCKG 227


>gi|58579180|ref|YP_197392.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Welgevonden]
 gi|81351125|sp|Q5FEH6|RLME_EHRRW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58417806|emb|CAI27010.1| Ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 129

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSL 161
           + +M  I  V F   D  +    E +         D+VLSDMA    G++++DH   ++L
Sbjct: 1   MQEMSSIPNVIFILCDIANK--IELLNSTFDKKKFDVVLSDMAPKACGNKQVDHANIINL 58

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           CE +   A++ +   G F+ K  QG    +    +K HF  V + KP ASR +S EM+L+
Sbjct: 59  CEMSLEIAVKFIKPNGIFITKILQGEYEKEFYQSVKYHFNSVKYFKPKASRKDSSEMYLV 118

Query: 222 AKGFRK 227
           + GF++
Sbjct: 119 SLGFKE 124


>gi|156848734|ref|XP_001647248.1| hypothetical protein Kpol_1002p37 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117933|gb|EDO19390.1| hypothetical protein Kpol_1002p37 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 317

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR--RIVDL 74
           ++ R    S   WL R  +DPY Q A+ +  R+R+A+KL++IN + ++   ++   ++DL
Sbjct: 26  IQLRYNSNSKSRWLQRQWSDPYTQEAKDQNLRSRAAFKLIEINNRFKLFDKHKKLNVLDL 85

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           G +PG+WSQV  +   S ++++ ++ +DIL  +P  GV   + + L   + + IR     
Sbjct: 86  GFAPGAWSQVIRK---STSDDSLILGVDILPCDPPTGVSSIQANILSKRTHDLIRLFFNE 142

Query: 135 NPDLVLSDMAYP 146
           +  L   D  + 
Sbjct: 143 SFQLNREDNLHK 154



 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH +++ LC+AA   A++++   G F+ K + G   N     LKK F K 
Sbjct: 224 MANTSGLAVKDHAQSIDLCDAALVTAIDLVKPKGSFVCKLYSGKEENLFEKRLKKVFHKA 283

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP +SR+ES E + +    R+
Sbjct: 284 YRFKPKSSRSESKEFYFIGLNKRE 307


>gi|20069990|ref|NP_613194.1| hypothetical protein McnAVgp111 [Mamestra configurata NPV-A]
 gi|20043384|gb|AAM09219.1| unknown [Mamestra configurata NPV-A]
 gi|33331822|gb|AAQ11130.1| hypothetical protein [Mamestra configurata NPV-A]
          Length = 275

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 9/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI------TGSNANNTRVVAIDI 103
           R  +KL +I+EK  + +     VDL   PG +++            G    N      D 
Sbjct: 39  RCYHKLKEIDEKFNVCRDVDTFVDLCGGPGQFAKYVFSTNPDCVGYGVTLRNDCDYTFDH 98

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                I G  F   D  D +    +        +LV++D A+   G        T+SL  
Sbjct: 99  KHFRKIYGC-FDSGDIFDANVMFELMYFCRKRCNLVVADGAFDVSGRENDQETLTLSLLR 157

Query: 164 AATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +  LE+L  GG+ ++K F      T  +L     +F +    KP  SRA + E +L+
Sbjct: 158 KECYIILEVLRAGGNCVLKIFDTFNRATISLLQSFIVNFDEFYFYKPTHSRAANSEKYLV 217

Query: 222 AKG 224
            KG
Sbjct: 218 CKG 220


>gi|58617234|ref|YP_196433.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Gardel]
 gi|75356966|sp|Q5FH15|RLME_EHRRG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|58416846|emb|CAI27959.1| Ribosomal RNA large subunit methyltransferase J [Ehrlichia
           ruminantium str. Gardel]
          Length = 129

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSL 161
           +  M  I  V F   D    ++ E +         D+VLSDMA    G++++DH   ++L
Sbjct: 1   MQKMSSIPNVIFILCDI--ANNIELLNSTFDKKKFDVVLSDMAPKACGNKQVDHANIINL 58

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           CE +   A++ +   G F+ K  QG    +    +K HF  V + KP ASR +S EM+L+
Sbjct: 59  CEMSLEIAVKFIKPNGIFITKILQGEYEKEFYQSVKYHFNSVKYFKPKASRKDSSEMYLV 118

Query: 222 AKGFRK 227
           + GF++
Sbjct: 119 SLGFKE 124


>gi|115400479|ref|XP_001215828.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Aspergillus terreus
           NIH2624]
 gi|114191494|gb|EAU33194.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Aspergillus terreus
           NIH2624]
          Length = 474

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 17/160 (10%)

Query: 83  QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP------ 136
             A         N ++V+ID+  M P+ G+   K D     +   + +A+  +       
Sbjct: 4   AHAETAELKPRKNVKIVSIDLQPMAPLEGITTLKADITHPSTIPLLLRALDPDAYDSSSA 63

Query: 137 -----------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
                      DLV+SD A    G   +D      L  AA   AL +L  GG F+ K F+
Sbjct: 64  SPSALRPPHPVDLVISDGAPDVTGLHDLDIYIQSQLLYAALNLALGVLRPGGKFVAKIFR 123

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G   + I   L+  F+KV   KP +SRA S+E F++ +GF
Sbjct: 124 GRDVDIIYAQLRTVFEKVSVAKPRSSRASSLESFVVCEGF 163


>gi|198477577|ref|XP_002136545.1| GA23223 [Drosophila pseudoobscura pseudoobscura]
 gi|198142832|gb|EDY71545.1| GA23223 [Drosophila pseudoobscura pseudoobscura]
          Length = 232

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQ-AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M PI GV   + D     + E I +   G    LV+SD A  + G    D      L  +
Sbjct: 1   MAPIDGVHQLRADITKESTAEAIIEYFEGQKAQLVVSDGAPDSTGMHDFDVYMQGELLLS 60

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A   +  +L  GG  + K ++   T+ +   L++ F+ V   KP ASR  S+E F++A+ 
Sbjct: 61  ALSISTFILETGGSLVAKIYRADNTSRLYLQLQRFFKDVCVFKPSASRNSSIEAFVVARQ 120

Query: 225 F 225
           F
Sbjct: 121 F 121


>gi|145477769|ref|XP_001424907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391974|emb|CAK57509.1| unnamed protein product [Paramecium tetraurelia]
          Length = 276

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           M P+  V   + D     + + I +       D+++ D A    G   ID+     L  A
Sbjct: 101 MAPLDHVTQIQGDITKKTTVDEILKKFNYQRADIIVCDGAPDVTGFHDIDYYIQSQLIVA 160

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           A    L  L   G F+ K F+G     +    K  F +V  +KP +SRA SVE F++   
Sbjct: 161 ALNICLMTLRENGIFVAKIFKGSDIKLLYSQFKLFFNQVYFMKPKSSRASSVEYFIICLQ 220

Query: 225 F 225
           +
Sbjct: 221 Y 221


>gi|113195465|ref|YP_717602.1| Se89-like protein [Clanis bilineata nucleopolyhedrosis virus]
 gi|94959006|gb|ABF47406.1| Se89-like protein [Clanis bilineata nucleopolyhedrosis virus]
          Length = 280

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 9/184 (4%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA------ARITGSNANNTRVVAI 101
           R R  +KL +I+++  + Q+    +DL   PG +++         +  G+   N+     
Sbjct: 48  RNRCYHKLREIDQQFNVCQNVNLFLDLCGGPGQFAKYVIDNNPGCKGFGTTLRNSCDYQY 107

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
              D + I G      +  +      I    GG  DLV++D A    G         + L
Sbjct: 108 KHEDFKKIYGKHN-SGNIFEESLRYEINMWCGGLCDLVMADGAVDVSGRENEQEQIMLPL 166

Query: 162 CEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            +      LE +  GG  ++K F      T  +L     HF +    KP +SRA + E +
Sbjct: 167 LKREIEICLENVRPGGACVLKIFDTYQEDTVALLEYFVSHFSEHTVFKPKSSRAANSEKY 226

Query: 220 LLAK 223
           L+ +
Sbjct: 227 LVCQ 230


>gi|242037577|ref|XP_002466183.1| hypothetical protein SORBIDRAFT_01g003090 [Sorghum bicolor]
 gi|241920037|gb|EER93181.1| hypothetical protein SORBIDRAFT_01g003090 [Sorghum bicolor]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 35/226 (15%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D + + +   G+ ARSA+KL+Q+ ++H+++     ++DLG +PG+W QVA +  G     
Sbjct: 8   DFFYRESLRLGYVARSAFKLIQMQKQHKLIAPGAAVLDLGCAPGAWLQVACQNLGPLEKG 67

Query: 96  TRVVA------IDILDMEPILGVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTI 148
             VV       + +        V+  + D +  +               ++LSDM  P  
Sbjct: 68  GVVVGVDVHQKVKVPSAHCDSRVRTVRADVMTMMKQQARAMSPQERGFSVILSDMCPPVS 127

Query: 149 GHRKIDHLRTMSLCEAATFFAL----------------------------EMLNIGGDFL 180
           G    D   +  L   A   A+                             +L  GG+ +
Sbjct: 128 GITTKDGAISCELGMRALSLAVGKIKLKESDYSEILEKYLSSTEPDPDEDGVLRRGGNLV 187

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K  +    +      K  F+KV  ++P A+R  S E++++ +G R
Sbjct: 188 MKFLENEDISGFGKFCKVKFKKVSLLRPKATRPSSREIYMICEGLR 233


>gi|153827666|ref|ZP_01980333.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-2]
 gi|149737860|gb|EDM52765.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
           MZO-2]
          Length = 93

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
            D+V+SDMA    G+  +D  R M L E A     ++L   G F+VK FQG   +D +  
Sbjct: 2   VDVVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKA 61

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 62  VRDLFKVVKIRKPDSSRSRSREVFIVATGYK 92


>gi|209170985|ref|YP_002268132.1| agip102 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436576|gb|ACI28803.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 290

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 10/183 (5%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----- 105
             +K+ +I++K  + ++    +DL   PG +++    +   +     V   +  D     
Sbjct: 47  CYFKIKEIDDKFTVCRNINVFLDLCGGPGQFAKYVFNVNDDDCLGFGVTLRNHCDYNFSH 106

Query: 106 --MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
                + G  F   D  D +    +        DLVL+D A+   G        ++SL  
Sbjct: 107 PNFRKMYGC-FDTGDIFDANVLFELMYFCRHKCDLVLADGAFDVAGRENDQETLSLSLIR 165

Query: 164 AATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                 LE L +GG  +VK F     +T  +L     HF++    KP  SRA + E +L+
Sbjct: 166 KECSVILEALRVGGSCVVKIFDTFNNSTISLLRNFVGHFEQHHLYKPPHSRAANSEKYLV 225

Query: 222 AKG 224
            KG
Sbjct: 226 CKG 228


>gi|22788745|ref|NP_690456.1| putative methyl transferase [Heliothis zea virus 1]
 gi|22671505|gb|AAN04332.1|AF451898_36 putative methyl transferase [Heliothis zea virus 1]
          Length = 943

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE--KHQILQSNRRIVDLGSS 77
           ++C+     W N    D  +   + +    R  +KL ++++    ++       +DL + 
Sbjct: 149 KNCKSKLPTWNN---TDETINMVRSQSCINRCFFKLAEMDQLSNFRLSNDAGLFMDLCAG 205

Query: 78  PGSWSQVAARITGSNAN---NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG- 133
           PG +++       SN       R + + I  +     VK +  D L+    +  R  +G 
Sbjct: 206 PGGFTEYLTYKNWSNFGIVLQHRDLPVQIEKLPNPAAVKVYTVDLLNAHDRDRFRHDMGI 265

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN--D 191
              DLV++D +    G   +       L  A    A + + +GG+F++KTF   T    +
Sbjct: 266 VKVDLVVADGSIDCRGRENLQEPLNYDLIRAQVDVAFDHIKVGGNFVLKTFDAFTNQMLN 325

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +   +  HF++   VKP  SR  + E +++A  ++
Sbjct: 326 LYYEIYSHFEEFTVVKPNTSRPANAERYIVAMNYK 360


>gi|213052989|ref|ZP_03345867.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 88

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 49/88 (55%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           V+SDMA    G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  ++ 
Sbjct: 1   VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 60

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F KV   KP +SRA S E++++A G +
Sbjct: 61  LFTKVKVRKPDSSRARSREVYIVATGRK 88


>gi|71422720|ref|XP_812230.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876988|gb|EAN90379.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 357

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 58/252 (23%)

Query: 28  DWLN--RHINDPYVQRAQLEG--------WRARSAYKLLQINEKHQIL-QSNRRIVDLGS 76
           +W    RHI     + A+ EG        +R RSA+KLL+++  + +     R +VDL +
Sbjct: 52  EWQAHPRHI----YKHARREGKESVQRRMYRCRSAHKLLELDAAYHLFAWPCRTVVDLAA 107

Query: 77  SPGSWSQVAARITGSNANNTR-------VVAIDILDMEPILGVKFFKFDFLD-----LDS 124
           +PG ++QVA +     +  T        V+A D   +EP+ G+   K D  D       +
Sbjct: 108 APGGFAQVALQRMACTSLPTSTEDVRPVVIAFDQRPIEPMEGLFSVKCDVNDHPRVMAYT 167

Query: 125 WEFIRQAIGGN------PDLVLSDMAYPTIGHRKIDH-LRTMSLCEAATFFALEMLNIGG 177
              +R   G N        +VL D      G            +   A   A     +  
Sbjct: 168 ARLLRTLQGENETQRKDVHVVLHDGVSVVKGQSLFSVTYGQNQMALGALRLAGSFFALHT 227

Query: 178 D------------------------FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
                                    F+ K       N +L   + +F  V   KP   + 
Sbjct: 228 HHTSARRLACGDVKHHDDNNRSTRKFITKAMHSSHFNTLLEACQLYFYDVHVHKPSECKP 287

Query: 214 ESVEMFLLAKGF 225
           ES+E +++A+GF
Sbjct: 288 ESLETYIVARGF 299


>gi|9634310|ref|NP_037849.1| ORF89 [Spodoptera exigua MNPV]
 gi|6960548|gb|AAF33618.1|AF169823_89 ORF89 [Spodoptera exigua MNPV]
          Length = 299

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRV 98
           R R  +K+  I++K Q+ ++    +DL   PG +++                 + NN   
Sbjct: 42  RNRCYFKMRDIDDKFQLCRNVNVFLDLCGGPGQFAKYIFDTNADCLGYGVTLRDNNNDCD 101

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
              D  +   + G  F   +  D +    +        DLV++D A+   G+       +
Sbjct: 102 YNFDHPNFRKMYGC-FDTGNIFDANVLFELMYFCRNKCDLVVADGAFDVSGNENDQESLS 160

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESV 216
            +L        ++ L  GG+ ++K F     +   +L     HF +    KP  SRA + 
Sbjct: 161 YNLIRKECSIIVDALRAGGNCVLKIFDTFERSTISLLQDFVSHFNEFAIYKPAHSRAANS 220

Query: 217 EMFLLAKG 224
           E +L+ KG
Sbjct: 221 EKYLVCKG 228


>gi|289614367|emb|CBI58877.1| unnamed protein product [Sordaria macrospora]
          Length = 522

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 15  QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS--NRRIV 72
             ++ R    S+  W  R  +D Y + A+  G ++R+A+KLL+IN+K+++ +    + +V
Sbjct: 50  TTLQTRPSSSSTSRWKTRQFSDRYAREARTAGLKSRAAFKLLEINKKYRLFRPSSGQIVV 109

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           DLG +PGSWSQVA  +T  +    +VV IDI+  +P  GV   + +FL       ++  +
Sbjct: 110 DLGFAPGSWSQVALDLTKPDG---KVVGIDIIPAQPPRGVSAIQGNFLSEGVRGLVKGWL 166



 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 44/84 (52%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH  +M LC AA  FA + L  GG F+ K +QG     +  +L+K F KV
Sbjct: 430 MMNTSGISFKDHAGSMDLCYAALSFANDTLKPGGHFVCKFYQGSEDKKLEDMLRKLFGKV 489

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP +SR+ES E + +A   R+
Sbjct: 490 FRDKPDSSRSESKEAYFVALNRRR 513


>gi|261326415|emb|CBH09375.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 432

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 24/145 (16%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS---NRRIVDLGSSPGSWSQVAAR 87
           ++   D Y ++A+ EG+RARSAYKLLQ++E+  IL+       +VDL ++PGSWSQV + 
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQLHEEFGILRREEIRTGVVDLCAAPGSWSQVLSN 64

Query: 88  -------------------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
                              I    +   R+VA+D+ +M PI GV+  + D     +   I
Sbjct: 65  HLCGSQPGSAAEACEGDEAINSEASQRPRIVAVDLQEMMPIDGVQLLQGDITSEWTAREI 124

Query: 129 RQAIGGNPDLV--LSDMAYPTIGHR 151
            + + G+   V   SD    +    
Sbjct: 125 IRLLNGDSSSVPECSDATALSTAGA 149



 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   DLV+ D A    G  ++D      L  AA      +L  GG F+ K F+G  T  +
Sbjct: 218 GRKADLVVCDGAPDVTGMHELDEYLQHHLLLAALNITTFVLRRGGTFVTKMFRGPNTPFL 277

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +   +  F++V   KP +SR  S+E F++ + +
Sbjct: 278 VAKAEVFFRQVTIAKPKSSRNASMEAFMVCQNY 310


>gi|84043514|ref|XP_951547.1| ribosomal RNA methyltransferase [Trypanosoma brucei TREU927]
 gi|33348376|gb|AAQ15702.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62358698|gb|AAX79154.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei]
          Length = 432

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 24/145 (16%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS---NRRIVDLGSSPGSWSQVAAR 87
           ++   D Y ++A+ EG+RARSAYKLLQ++E+  IL+       +VDL ++PGSWSQV + 
Sbjct: 5   SKDKRDIYYRKAKEEGYRARSAYKLLQLHEEFGILRREEIRTGVVDLCAAPGSWSQVLSN 64

Query: 88  -------------------ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
                              I    +   R+VA+D+ +M PI GV+  + D     +   I
Sbjct: 65  HLCGSQPGSAAEACEGDEAINSEASQRPRIVAVDLQEMMPIDGVQLLQGDITSEWTAREI 124

Query: 129 RQAIGGNPDLV--LSDMAYPTIGHR 151
            + + G+   V   SD    +    
Sbjct: 125 IRLLNGDSSSVPECSDATALSTAGA 149



 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G   DLV+ D A    G  ++D      L  AA      +L  GG F+ K F+G  T  +
Sbjct: 218 GRKADLVVCDGAPDVTGMHELDEYLQHHLLLAALNITTFVLRRGGTFVTKMFRGPNTPFL 277

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +   +  F++V   KP +SR  S+E F++ + +
Sbjct: 278 VAKAEVFFRQVTIAKPKSSRNASMEAFMVCQNY 310


>gi|238502002|ref|XP_002382235.1| ftsj, putative [Aspergillus flavus NRRL3357]
 gi|220692472|gb|EED48819.1| ftsj, putative [Aspergillus flavus NRRL3357]
          Length = 206

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 54/103 (52%)

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E +        D+VLSDM   T G    DH  +M LC AA  F+ E+L  GG F+ K +
Sbjct: 93  MEELCLTGKRTVDVVLSDMMMNTSGMSFRDHAGSMDLCRAALQFSFEVLKAGGHFVCKFY 152

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           QG    D+   LK+ FQKV  +KP +SR ES E + +    ++
Sbjct: 153 QGAEDKDLEKQLKRLFQKVHRLKPESSRNESKEAYFIGLARKQ 195


>gi|261327754|emb|CBH10731.1| rRNA methyltransferase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 284

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 45/225 (20%)

Query: 46  GWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNT-------R 97
            +R RSAYKLL++++K  +    +R +VDL ++PG +S+VA +   +  + T        
Sbjct: 1   MYRCRSAYKLLELDDKFSLFGGCSRTVVDLAAAPGGFSEVALQRMTAAEDVTSRPPVKPL 60

Query: 98  VVAIDILDMEPILGVKFFKFDFLD-----LDSWEFIRQA-----IGGNPDLVLSDMAY-- 145
           V+A D   M+    +   + +  D         EFI++           D+VL D     
Sbjct: 61  VIAFDTRPMKAARDLHVVQCNINDHKRVIASVEEFIQRRGVGDGADRQVDVVLHDGVSVA 120

Query: 146 -PTIGHRKIDHLRTMSLCEAATFFALEML-----------------------NIGG-DFL 180
                         M++       AL +L                          G  F+
Sbjct: 121 KSHSAFSVTYAQNQMAVGALRLACALFLLSSQPAGTRQPPRAEDGLASSSKAEPQGPTFV 180

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            K  +    N +L  +K +F+ V   +P    A S E +++A+GF
Sbjct: 181 TKAMRSAHFNQVLSAMKAYFRHVSVHRPAECNAASSETYVVARGF 225


>gi|72388286|ref|XP_844567.1| rRNA methyltransferase [Trypanosoma brucei TREU927]
 gi|62175370|gb|AAX69513.1| rRNA methyltransferase, putative [Trypanosoma brucei]
 gi|62359681|gb|AAX80113.1| hypothetical protein Tb04.30K5.570 [Trypanosoma brucei]
 gi|70801100|gb|AAZ11008.1| rRNA methyltransferase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 284

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 45/225 (20%)

Query: 46  GWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITGSNANNT-------R 97
            +R RSAYKLL++++K  +     R +VDL ++PG +S+VA +   +  + T        
Sbjct: 1   MYRCRSAYKLLELDDKFSLFGGCCRTVVDLAAAPGGFSEVALQRMTAAEDVTSRPPVKPL 60

Query: 98  VVAIDILDMEPILGVKFFKFDFLD-----LDSWEFIRQA-----IGGNPDLVLSDMAY-- 145
           V+A D   M+    +   + +  D         EFI++           D+VL D     
Sbjct: 61  VIAFDTRPMKAARDLHVVQCNINDHKRVIASVEEFIQRRGVGDGADRQVDVVLHDGVSVA 120

Query: 146 -PTIGHRKIDHLRTMSLCEAATFFALEML-----------------------NIGG-DFL 180
                         M++       AL +L                          G  F+
Sbjct: 121 KSHSAFSVTYAQNQMAVGALRLACALFLLSSQPAGTRQPPRAEDGLASSSKAEPQGPTFV 180

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            K  +    N +L  +K +F+ V   +P    A S E +++A+GF
Sbjct: 181 TKAMRSAHFNQVLSAMKAYFRHVSVHRPAECNAASSETYVVARGF 225


>gi|18138392|ref|NP_542688.1| ORF65 [Helicoverpa zea SNPV]
 gi|18028774|gb|AAL56210.1|AF334030_135 ORF65 [Helicoverpa zea SNPV]
          Length = 274

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 8/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-- 107
           R  +K+ +I+E+  + ++ R  VDL   PG ++   +  +  N+    V   + LD    
Sbjct: 46  RCWHKMKEIDERFNLCRNVRLYVDLCGGPGQFANYISNNSTLNSQGYGVTLRNHLDYNVF 105

Query: 108 -PILGVKFF---KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
            P     +      D  + D    +    G   DLV++D      G      L  + L  
Sbjct: 106 VPNFCAVYGDANTGDIFEEDIQNKLNMLCGHRCDLVVADGGIDVYGKENDQELIMLPLIA 165

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                 L+ L +GG+ ++K F     N    L     +F +    KPV+SR  + E +L+
Sbjct: 166 KQCEIILDCLRVGGNSVLKIFDTFARNTFVVLESFISNFSEFYVFKPVSSRPANAERYLV 225

Query: 222 AKG 224
              
Sbjct: 226 CLN 228


>gi|209401119|ref|YP_002273988.1| putative methyl transferase [Helicoverpa armigera NPV NNg1]
 gi|209364371|dbj|BAG74630.1| putative methyl transferase [Helicoverpa armigera NPV NNg1]
          Length = 274

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 8/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-- 107
           R  +K+ +I+E+  + ++ R  VDL   PG ++   +  +  N+    V   + LD    
Sbjct: 46  RCWHKMKEIDERFNLCRNVRLYVDLCGGPGQFANYISNNSTLNSQGYGVTLRNHLDYNVF 105

Query: 108 -PILGVKFF---KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
            P     +      D  + D    +    G   DLV++D      G      L  + L  
Sbjct: 106 VPNFCAVYGDANTGDIFEEDIQNKLNMLCGHRCDLVVADGGIDVYGKENDQELIMLPLIA 165

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                 L+ L +GG+ ++K F     N    L     +F +    KPV+SR  + E +L+
Sbjct: 166 KQCEIILDCLRVGGNSVLKIFDTFARNTFVVLESFISNFSEFYVFKPVSSRPANAERYLV 225

Query: 222 AKG 224
              
Sbjct: 226 CLN 228


>gi|90592813|ref|YP_529766.1| ORF-96 [Agrotis segetum nucleopolyhedrovirus]
 gi|71559263|gb|AAZ38262.1| ORF-96 [Agrotis segetum nucleopolyhedrovirus]
          Length = 280

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 9/185 (4%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID----- 102
           R R  +KL  I++K  I +     +DL   PG +++    +          +  D     
Sbjct: 45  RDRCFHKLKNIDDKFGICRDVGVFLDLCGGPGQFAKYIFSVNEDCVGYGVTLRNDCDYSF 104

Query: 103 -ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
              +   + G  F   D  D +    +        DLV++D A+   G        ++SL
Sbjct: 105 SHPNFRKMYGC-FDTGDIFDANVLFEVMYFCRQKCDLVVADGAFDVRGCENDQETLSLSL 163

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMF 219
                   +E L +GG+ ++K F     +   +L     HF K    KP  SRA + E +
Sbjct: 164 LRKECSVIVETLRVGGNCVLKVFDTFNCSTISLLENFVSHFTKHYLYKPSHSRAANSEKY 223

Query: 220 LLAKG 224
           L+ KG
Sbjct: 224 LVCKG 228


>gi|12597548|ref|NP_075132.1| hypothetical protein HanGV4gp063 [Helicoverpa armigera
           nucleopolyhedrovirus G4]
 gi|15426323|ref|NP_203618.1| hypothetical protein [Helicoverpa armigera NPV]
 gi|12483814|gb|AAG53806.1|AF271059_63 unknown [Helicoverpa armigera nucleopolyhedrovirus G4]
 gi|15384399|gb|AAK96310.1|AF303045_52 unknown [Helicoverpa armigera NPV]
          Length = 274

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 8/183 (4%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-- 107
           R  +K+ +++E+  + ++ R  VDL   PG ++   +  +  N+    V   + LD    
Sbjct: 46  RCWHKMKELDERFNLCRNVRLYVDLCGGPGQFANYISNNSTLNSQGYGVTLRNHLDYNVF 105

Query: 108 -PILGVKFF---KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
            P     +      D  + D    +    G   DLV++D      G      L  + L  
Sbjct: 106 VPNFCAVYGDANTGDIFEEDIQNKLNMLCGHRCDLVVADGGIDVYGKENDQELIMLPLIA 165

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLL 221
                 L+ L +GG+ ++K F     N    L     +F +    KPV+SR  + E +L+
Sbjct: 166 KQCEIILDCLRVGGNSVLKIFDTFARNTFVVLESFISNFSEFYVFKPVSSRPANAERYLV 225

Query: 222 AKG 224
              
Sbjct: 226 CLN 228


>gi|82596865|ref|XP_726438.1| cell division protein FtsJ [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481849|gb|EAA18003.1| FtsJ cell division protein [Plasmodium yoelii yoelii]
          Length = 125

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D Y + A+  G+RARSA+KL+QI +K+ I ++   ++DL ++PG W QVA +    N+  
Sbjct: 13  DKYYKLAKSAGYRARSAFKLIQIAKKYNIFKNANILIDLCAAPGGWLQVAYKNMNKNST- 71

Query: 96  TRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPT 147
             ++ +D++ +  I   V   K D    +    I+  I     D++L+D A   
Sbjct: 72  --IIGVDLVPIRKIDNNVITIKSDITSSECIRKIKDIIKYEKADVILNDGAPNV 123


>gi|85080610|ref|XP_956572.1| hypothetical protein NCU03987 [Neurospora crassa OR74A]
 gi|28917641|gb|EAA27336.1| predicted protein [Neurospora crassa OR74A]
          Length = 2042

 Score =  111 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 28   DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSN--RRIVDLGSSPGSWSQVA 85
             W  R  ND Y + A+  G ++R+A+KLL+IN+K+++ + N  + +VDLG +PGSWSQVA
Sbjct: 1636 QWKARQSNDYYARSARTAGLKSRAAFKLLEINKKYRLFRRNSSQIVVDLGFAPGSWSQVA 1695

Query: 86   ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
              +T  +    +VV IDI+  +P  GV   + +FL       ++  +
Sbjct: 1696 LDLTKPDG---KVVGIDIIPAQPPRGVSSIQGNFLSDGVRGLVKGWL 1739



 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 36/70 (51%)

Query: 144  AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
               T G    DH  +M LC AA  FA + L  GG F+ K +QG     +  +LKK F KV
Sbjct: 1965 MMNTSGISFKDHAGSMDLCYAALSFANDTLKPGGHFVCKFYQGSEDKKLENMLKKLFTKV 2024

Query: 204  IHVKPVASRA 213
               KP +SR+
Sbjct: 2025 HRDKPDSSRS 2034


>gi|68059132|ref|XP_671546.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56487824|emb|CAI03817.1| hypothetical protein PB301372.00.0 [Plasmodium berghei]
          Length = 325

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 42/181 (23%)

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----------- 135
           +         ++VA+D+ ++  +  +   + D   + +   I + +  N           
Sbjct: 29  KNNNYQIKEPKLVAVDLQEIGNMNYINIIQGDITKMSTINKILKCMNENEKDIEFSVNSP 88

Query: 136 -------------------------------PDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
                                             V+SD A    G   ID      L  +
Sbjct: 89  KHIYDEDSSIKYNKMKNNILNKEKENNKFVYAHAVVSDGAPDITGMNDIDEFIQSQLILS 148

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +      +L IGG+F+ K F+G  T+ ++  L K F+K+   KP +SR +S+E FL+   
Sbjct: 149 SLKVCCSVLKIGGNFISKIFRGEYTSLLIFHLNKFFEKIYVCKPQSSRNKSLESFLVCLN 208

Query: 225 F 225
           F
Sbjct: 209 F 209


>gi|298712535|emb|CBJ26803.1| putative ribosomal RNA methyltransferase 2 [Ectocarpus siliculosus]
          Length = 575

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
           PG+         V   +  GSS  W+ RH+ DPYV  A   G  +R+A+KL++IN++H +
Sbjct: 74  PGAGKSGAGGTAVGRATKGGSSGLWMRRHLKDPYVSAAIEAGAPSRAAFKLVEINDRHGV 133

Query: 65  LQSNRRIVDLGSSPGSWSQ--------------VAARITGSNANNTRVVAIDILDMEP-I 109
           L +  R                            AA   G       VVA+D+LDME  +
Sbjct: 134 LSAGDRAPASRGGGSRGGGAPPALPPPLPEGRLEAAERKGGRGRGAVVVAVDLLDMEADL 193

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138
            GV+  + DF D +    I   +     L
Sbjct: 194 PGVQAIRGDFRDEEVESRIFGLLSARERL 222



 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +L  GG FL K F G    ++    ++ F++V  VKP ASR+ S EM+LLA GF
Sbjct: 513 TGLLARGGTFLGKFFAGRDEREVKEEAERLFERVKVVKPPASRSGSGEMYLLATGF 568


>gi|116326137|ref|YP_803463.1| putative methyltransferase [Anticarsia gemmatalis
           nucleopolyhedrovirus]
 gi|112180875|gb|ABI13852.1| putative methyltransferase [Anticarsia gemmatalis
           nucleopolyhedrovirus]
          Length = 274

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I+++ ++ Q+    +DL   PG ++        S       +A +     
Sbjct: 41  RPRCWRKLAEIDKQFKVCQNVNTALDLCGGPGEFADYIMSCNASCRLYGVTLATNAPYKR 100

Query: 108 PILGVKFF--------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            +     F          D LD +    +    G   DLVL+D A    G          
Sbjct: 101 RVRNQTNFCAVIGPDATGDVLDKNVLFDLSVKCGNACDLVLADGAVDVTGRENDQERLNA 160

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVE 217
            L    T  AL  L  GG+ ++K F       +  L     HF +   VKP +SR  + E
Sbjct: 161 PLIMRETQLALICLRPGGNCVIKVFDAFDDETLNMLANFVCHFARWRLVKPPSSRPSNSE 220

Query: 218 MFLLAKG 224
            +L+   
Sbjct: 221 RYLVCLN 227


>gi|226287509|gb|EEH43022.1| ribosomal RNA methyltransferase MRM2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 622

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
              SS+ W  R   D Y + A ++G ++R+A+KLLQIN+KH+I +  + +VDL       
Sbjct: 413 RHSSSKRWQARQAKDRYSREAIVKGLKSRAAFKLLQINDKHKIFKLGQSVVDL------- 465

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI--GGNPDLV 139
             VA  +T  N    RVV +DI+  +P  GV   + +FL      ++++ +       + 
Sbjct: 466 --VAVELTQPNG---RVVGVDIIPAQPPKGVSTIQGNFLSPQVQAYVQEFLRNPNRGRVQ 520

Query: 140 LSDMAYPTIGHRKIDHLRTMS 160
             +    T    +      + 
Sbjct: 521 RLNHFENTDPDSQSITGYQIE 541


>gi|297183084|gb|ADI19228.1| 23S rRNA methylase [uncultured delta proteobacterium HF0200_14D13]
          Length = 128

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 8/131 (6%)

Query: 99  VAIDILDME--PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           + +D+  ++      VK  + D  +L     + Q      D++LSDMA  T G R +D  
Sbjct: 1   MGVDLQPVDVGLPKHVKTLQGDVFELT----LEQLPPEPFDMILSDMAPRTSGVRSMDAD 56

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
           R+ +L +     + + L  GG+ LVK FQG     +    ++ F++V   KP +SR+ESV
Sbjct: 57  RSYALNQQVLGLSGKHLKSGGNLLVKAFQGAPFEQLRKDFREVFEEVRICKPRSSRSESV 116

Query: 217 EMFLLAKGFRK 227
           E+FLL  G RK
Sbjct: 117 EVFLL--GLRK 125


>gi|312379916|gb|EFR26060.1| hypothetical protein AND_08114 [Anopheles darlingi]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 4/136 (2%)

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGH 150
                 V+ +D+L +  I        DFL  ++ + +R  +G    D VLSDMA    G 
Sbjct: 92  GKPKGMVIGVDLLQIYLIEPST---LDFLRQETQDKLRATLGDRRLDCVLSDMAPNATGF 148

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
           R +D     +LC +   FAL M +     L+K +  G    +   + +++  V  VKP A
Sbjct: 149 RALDQENVTTLCYSVLRFALLMSSPKASLLMKIWDNGDVPKLEKSINEYYDSVKRVKPRA 208

Query: 211 SRAESVEMFLLAKGFR 226
           SR +S E F+LA+GFR
Sbjct: 209 SRNDSSENFILARGFR 224


>gi|194378570|dbj|BAG63450.1| unnamed protein product [Homo sapiens]
          Length = 145

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 2/84 (2%)

Query: 13  LTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIV 72
           +  + KNR+  G+   WL RH+ DP+V+ A++E +R RSA+KLL++NE+HQIL+   R++
Sbjct: 20  VGSRCKNRT--GAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVL 77

Query: 73  DLGSSPGSWSQVAARITGSNANNT 96
           D G++PG+WSQVA +   +   + 
Sbjct: 78  DCGAAPGAWSQVAVQKVNAAGTDG 101


>gi|320580692|gb|EFW94914.1| Ribosomal RNA methyltransferase MRM2 [Pichia angusta DL-1]
          Length = 315

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)

Query: 21  SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR--RIVDLGSSP 78
              GSS  W+ R   D Y + A+   +++R+A+KLLQI+EK  I    R   I+DLG++P
Sbjct: 19  KKSGSSHRWIQRQRTDLYTRDAKHYDYKSRAAFKLLQIDEKFGIFSQERISNILDLGAAP 78

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+WSQVA       +N   ++ +D+L  +P  G    + + L   + E I++   
Sbjct: 79  GAWSQVALERCRKGSN---ILGVDLLVYQPPNGSSSMQANILSKKTHENIKEHFK 130



 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH  +M LC+AA   ++++L  GG+ + K F G     +   L   F+KV
Sbjct: 220 MANTSGLSFRDHAMSMDLCDAALITSIDLLKKGGNSVFKFFTGKDDKFLEKRLTHVFRKV 279

Query: 204 IHVKPVASRAESVEMFLLAKG 224
           I  KP A R ES E + +   
Sbjct: 280 IRFKPKACRPESKECYFVCLD 300


>gi|302758758|ref|XP_002962802.1| hypothetical protein SELMODRAFT_438129 [Selaginella moellendorffii]
 gi|300169663|gb|EFJ36265.1| hypothetical protein SELMODRAFT_438129 [Selaginella moellendorffii]
          Length = 639

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN----PDLVLSDM 143
           +       + V+ +D++ + P   V+  + D         I + +  N     D+VL D 
Sbjct: 1   MDAGGRVRSVVIGVDLVPIRP---VRALQGDITTPKCASDIGKILDQNGLRMVDVVLHDG 57

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           +    G    + +   SL   +   A + L   G F+ K F+    N +    ++ F KV
Sbjct: 58  SPNVGGAWAKEAMTQSSLVLDSLKLATKFLAPKGTFVTKVFRSQDYNALKYAFEQLFAKV 117

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
                 ASR+ S E++++   +
Sbjct: 118 EV----ASRSTSAEIYVVGLKY 135


>gi|296235394|ref|XP_002762910.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like
           [Callithrix jacchus]
          Length = 243

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%)

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             G   +D      L  AA   A  +L  GG F+ K F+G     +   L+  F  V+  
Sbjct: 12  VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCA 71

Query: 207 KPVASRAESVEMFLLAKGF 225
           KP +SR  S+E F + +G+
Sbjct: 72  KPRSSRNSSIEAFAVCQGY 90


>gi|324525209|gb|ADY48522.1| Ribosomal RNA methyltransferase [Ascaris suum]
          Length = 121

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 106 MEPILGVKFFKF-DFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           M P+ GV      D    ++   I+Q + G   D V+SDMA    G + +DH R ++LCE
Sbjct: 1   MVPLAGVDLITMADITSPETHHRIKQYLSGRSVDAVVSDMAPNPSGDKTVDHERIIALCE 60

Query: 164 AATFFALEM-----LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
               F         L  GG FL K + G     ++  LK +F  V ++KP ASR  S E+
Sbjct: 61  QLLSFCCGNAAVIPLKKGGTFLCKIWDGQRRLQLIESLKGYFHIVHNIKPDASRDHSAEL 120

Query: 219 F 219
           +
Sbjct: 121 Y 121


>gi|15617533|ref|NP_258333.1| hypothetical protein [Spodoptera litura NPV]
 gi|15553269|gb|AAL01747.1|AF325155_59 unknown [Spodoptera litura NPV]
          Length = 313

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 25/200 (12%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R  YKL QIN+K ++    R  +DL   PG + +    +   +     V   + LD +  
Sbjct: 57  RCFYKLKQINDKFKVCDDIRTYLDLCGGPGQFVRYLNAVNDESVLGFGVTLRNHLDYDKS 116

Query: 110 LGVKF------FKFD-----------------FLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
           +  +F         D                  +       I    GG  D V +D A+ 
Sbjct: 117 IVKRFADRFTRIYGDETKSSSGDGDGGNGSGDIMSESVVRQIVSKCGGRCDFVCADGAFD 176

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVI 204
             G        T+ L        L  L++GG+ +VK F      T ++L    K+F++  
Sbjct: 177 VTGDENRQEFLTLPLIRRECELILSCLSVGGNCVVKVFDTFESDTRNVLGDFVKNFEEYH 236

Query: 205 HVKPVASRAESVEMFLLAKG 224
             KP +SR  + E +L+ K 
Sbjct: 237 VFKPESSRVCNSERYLVCKN 256


>gi|96979846|ref|YP_611052.1| met [Antheraea pernyi nucleopolyhedrovirus]
 gi|94983379|gb|ABF50319.1| met [Antheraea pernyi nucleopolyhedrovirus]
          Length = 263

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 10/187 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I+ +  + +     +DL   PG ++                +A +     
Sbjct: 35  RPRCWRKLAEIDRQFGVCRGVNTALDLCGGPGEFAAYTLARNPLCRMFGVTLAANAPYKR 94

Query: 108 PILGVKFFK--------FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            + G   F          D LD +    +  A G   DLVL+D A    G          
Sbjct: 95  AVRGRANFTAVMGPDGTGDVLDKNVLFDLSVACGNACDLVLADGAVDADGREDAQERLNA 154

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVE 217
            L    T  AL  L  GG  ++K F       +  L     HF +   VKP +SR  + E
Sbjct: 155 PLILRETQLALICLRPGGHCVLKVFDAFHDETLRALERFVGHFARWRLVKPPSSRPANSE 214

Query: 218 MFLLAKG 224
            +L+  G
Sbjct: 215 RYLVCLG 221


>gi|29567139|ref|NP_818701.1| hypothetical protein AhnVgp054 [Adoxophyes honmai NPV]
 gi|29467915|dbj|BAC67305.1| hypothetical protein [Adoxophyes honmai NPV]
          Length = 275

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA------ARITGSNANNTRVVAI 101
           R R  +KL +I++K+ + Q  +  +DL   PG +++         R  G   NN      
Sbjct: 36  RDRCYHKLHEIDKKYFVCQHVKTFIDLCGGPGQFAKYIFDSNFECRGYGVTLNNALRYQF 95

Query: 102 DILDMEPILGVKFFKFDFLDLDSW-EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
              +   I G      +  D     E          DL+++D A    G+          
Sbjct: 96  KNRNFTKIYGHDN-SGNIFDTSVQFELQMLCENNTVDLIVADGAVDVSGNENHQETINFL 154

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEM 218
           +        L++L + G+ +VK F         +L     HF+     KP +SRA + E 
Sbjct: 155 IINEECKIILKLLKVNGNCVVKVFDTFNDETVCLLERFVTHFENSYIFKPSSSRAANSER 214

Query: 219 FLLAKG 224
           +L+ K 
Sbjct: 215 YLVCKN 220


>gi|209978826|ref|YP_002300569.1| hypothetical protein [Adoxophyes orana nucleopolyhedrovirus]
 gi|192758808|gb|ACF05343.1| hypothetical protein [Adoxophyes orana nucleopolyhedrovirus]
          Length = 275

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA------ARITGSNANNTRVVAI 101
           R R  +KL +I++K+ + QS    +DL   PG +++         R  G   NN      
Sbjct: 36  RDRCYHKLHEIDKKYFVCQSVNTFIDLCGGPGQFAKYIFDSNFECRGYGVTLNNALNYQF 95

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMS 160
              +   I G      +  D      ++     N  DL+++D A    G+          
Sbjct: 96  KNRNFTRIYGHDN-SGNIFDTSVQFELQMLCENNAVDLIVADGAVDVSGNENHQETINFL 154

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEM 218
           +        L++L + G+ ++K F         +L     HF+     KP +SRA + E 
Sbjct: 155 IISEECKIILKLLKVNGNCVIKVFDTFNDETVCLLENFATHFENSYIFKPSSSRAANSER 214

Query: 219 FLLAKG 224
           +L+ K 
Sbjct: 215 YLVCKN 220


>gi|37651383|ref|NP_932674.1| putative methly transferase [Choristoneura fumiferana DEF MNPV]
 gi|37499292|gb|AAQ91691.1| putative methly transferase [Choristoneura fumiferana DEF MNPV]
          Length = 274

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 10/187 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I+++ ++ Q     +DL   PG ++        S       +A +     
Sbjct: 41  RPRCWRKLAEIDKQFKVCQGVNTALDLCGGPGEFAAYTMSCNASCRVYGVTLAANAPYKR 100

Query: 108 PILGVKFF--------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            +     F          D LD +    +    G   DLVL+D A    G          
Sbjct: 101 TVRNQANFCAVMGPDATGDVLDKNVLFDLSVKCGNACDLVLADGAVDVTGRENDQERLNA 160

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVE 217
            L    T  AL  L  GG+ ++K F        ++L    +HF +   VKP +SR  + E
Sbjct: 161 PLIMRETQLALICLRPGGNCIIKVFDAFDDETINMLANFVRHFARWRLVKPPSSRPSNSE 220

Query: 218 MFLLAKG 224
            +L+   
Sbjct: 221 RYLVCIN 227


>gi|156402431|ref|XP_001639594.1| predicted protein [Nematostella vectensis]
 gi|156226723|gb|EDO47531.1| predicted protein [Nematostella vectensis]
          Length = 529

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 43/95 (45%)

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
           ++      D VL+D A         D      L  +A   A E L  GG F+ K F+   
Sbjct: 22  KELKTWQADCVLNDGAPNVGTAWVQDAFTQAELTLSALKLACENLKEGGWFITKVFRSKD 81

Query: 189 TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              +L + ++ F+ V   KP ASR ES E+F++ +
Sbjct: 82  YQPLLWVFQQLFKSVHSTKPQASRNESAEIFVVCQ 116


>gi|327275748|ref|XP_003222634.1| PREDICTED: putative rRNA methyltransferase 3-like [Anolis
           carolinensis]
          Length = 771

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 49/100 (49%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
              ++      D+VL+D A         D     +L  +A   A + L+ GG F+ K F+
Sbjct: 11  ALRKELKTWKVDVVLNDGAPNVGARWFPDAFSQANLTLSALKLACDFLSKGGWFITKVFR 70

Query: 186 GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                 +L + ++ F+KV   KP ASR ES E+F++ +G+
Sbjct: 71  SRDYQPLLWIFQQLFRKVQATKPQASRNESAEIFVVCQGY 110


>gi|146229746|gb|ABQ12311.1| putative methly transferase [Antheraea pernyi nucleopolyhedrovirus]
          Length = 264

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 10/187 (5%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I+ +  + +     +DL   PG ++                +A +     
Sbjct: 35  RPRCWRKLAEIDRQFGVCRGVNTALDLCGGPGEFAAYTLARNPLCRMFGVTLAANAPYKR 94

Query: 108 PILGVKFFK--------FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            + G   F          D LD +    +  A G   DLVL+D A    G          
Sbjct: 95  AVRGRANFTAVMGPDGTGDVLDKNVLFDLSVACGNACDLVLADGAVDADGREDAQERLNA 154

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVE 217
            L    T  AL  L  GG  ++K F       +  L     HF +   VKP +SR  + E
Sbjct: 155 PLILRETQLALICLRPGGHCVLKVFDAFHDETLRALERFVGHFARWRLVKPPSSRPANSE 214

Query: 218 MFLLAKG 224
            +L+  G
Sbjct: 215 RYLVCLG 221


>gi|291334187|gb|ADD93854.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
 gi|291336828|gb|ADD96362.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C727]
          Length = 121

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
           M+ I GV F K D   L     I   +    DLVLSD+A    G   +D    + + E+ 
Sbjct: 1   MKKIKGVHFIKGDINKLADRSQIYAKMN-KADLVLSDIAPNISGIEDVDQANFVEILESI 59

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                ++L I G  ++K F G + +     LK+ F KV   KP +SR  S E+F +  G+
Sbjct: 60  LSICSDLLKINGVLVMKFFIGSSYDFSRGKLKQSFSKVATYKPDSSRRSSNEVFFVCNGY 119

Query: 226 R 226
           +
Sbjct: 120 K 120


>gi|237643608|ref|YP_002884298.1| Ac69-like protein [Bombyx mandarina nucleopolyhedrovirus]
 gi|229358154|gb|ACQ57249.1| Ac69-like protein [Bombyx mandarina nucleopolyhedrovirus]
          Length = 262

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 14/190 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA-----------ARITGSNANNT 96
           R R   KLL+I++K  + +     +DL   PG ++                +T ++    
Sbjct: 36  RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 95

Query: 97  RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           +       +   I G      D  D +    I    G   DLVL+D +    G       
Sbjct: 96  KPTVCKRKNFTTITGPD-KSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQER 154

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAE 214
               L    T   L  L  GG+ ++K F         +L     HF+K +  KP +SR  
Sbjct: 155 LNFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNRFVNHFEKWVLYKPPSSRPA 214

Query: 215 SVEMFLLAKG 224
           + E +L+   
Sbjct: 215 NSERYLICFN 224


>gi|30387297|ref|NP_848376.1| hypothetical protein CfMNPVgpORF65 [Choristoneura fumiferana MNPV]
 gi|30270031|gb|AAP29847.1| unknown [Choristoneura fumiferana MNPV]
          Length = 266

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 18/191 (9%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I+++  + +     +DL   PG ++          +   RV  + +    
Sbjct: 36  RPRCWRKLAEIDKRFNVCRGVNTALDLCGGPGEFAAYTL----WRSPLCRVFGVTLTRNA 91

Query: 108 PILGVKFF------------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           P     +               D LD +    +    G   +LVL+D A  + G      
Sbjct: 92  PYKRAVYAHSNFTAVLGPDGTGDVLDKNVLFDLSVTCGNACELVLADGAVDSTGREDEQE 151

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRA 213
                L    T  AL  L  GG+ ++K F    G T   L    +HF     +KP +SR 
Sbjct: 152 RLNAPLILRETQLALICLRPGGNCVLKVFDAFYGETLRTLQQFARHFASWRLMKPPSSRP 211

Query: 214 ESVEMFLLAKG 224
            + E +L+  G
Sbjct: 212 SNSERYLVCLG 222


>gi|146094605|ref|XP_001467328.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071693|emb|CAM70384.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 335

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 69/250 (27%)

Query: 46  GWRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARIT------GSNANNTR 97
            +R +SA KLL+IN++++I    R   +VDL ++PG ++QVA  +         +A    
Sbjct: 1   MYRCQSALKLLEINDRYRIFHRLRPSTVVDLAAAPGGFAQVALELMHLPENAPQSALPPM 60

Query: 98  VVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAI----------------------GG 134
           VVA+D   ++P+ G+   + + L      + ++ A+                        
Sbjct: 61  VVAVDQRSIDPMPGLVAVRGNILQHQRILQTVQGALSLMRAPTTSPPRVLSSAHTAPQAR 120

Query: 135 NPDLVLSDMAYPTIGHRKIDH-LRTMSLCEAATFFALEM-------------------LN 174
             D+VL D      G R          +  +    A ++                     
Sbjct: 121 CVDMVLHDGVSVVKGQRAFSVTYAQNHMALSTLLLASKLFQRRGLMPDLLTDAAPHRSSK 180

Query: 175 IGG------------------DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
             G                   F+ K  Q   +  +L   +  F+ V   KPVASR ES+
Sbjct: 181 PEGRISRSTSAPRSSSAVLPVCFVSKVLQCDHSAQVLEATQALFRYVRIFKPVASRPESL 240

Query: 217 EMFLLAKGFR 226
           E +++A  F+
Sbjct: 241 ERYVVATDFQ 250


>gi|9630876|ref|NP_047473.1| AcMNPV orf69 [Bombyx mori NPV]
 gi|3745895|gb|AAC63742.1| AcMNPV orf69 [Bombyx mori NPV]
          Length = 262

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 14/190 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA-----------ARITGSNANNT 96
           R R   KLL+I++K  + +     +DL   PG ++                +T ++    
Sbjct: 36  RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 95

Query: 97  RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           +       +   I G      D  D +    I    G   DLVL+D +    G       
Sbjct: 96  KPTVCKRKNFTTITGPD-KSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQER 154

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAE 214
               L    T   L  L  GG+ ++K F         +L     HF+K +  KP +SR  
Sbjct: 155 LNFDLIMCETQLILICLRPGGNCVLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPA 214

Query: 215 SVEMFLLAKG 224
           + E +L+   
Sbjct: 215 NSERYLICFN 224


>gi|157873068|ref|XP_001685050.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|13751837|emb|CAC37239.1| FtsJ-like methyltransferase [Leishmania major]
 gi|68128121|emb|CAJ08252.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 335

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 69/250 (27%)

Query: 46  GWRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARIT------GSNANNTR 97
            +R +SA KL++IN++++I    R   +VDL ++PG ++QVA  +         +A    
Sbjct: 1   MYRCQSALKLVEINDRYRIFHRFRPSTVVDLAAAPGGFAQVALELMHLPENAPQSALPPM 60

Query: 98  VVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIG----------------------G 134
           VVA+D   ++P+ G+   + + L      + ++ A+                        
Sbjct: 61  VVAVDQRPIDPMPGLVAVRGNILQHQRILQAVQGALSLTRAPTTSPPRVLSSARTAPQTR 120

Query: 135 NPDLVLSDMAYPTIGHRKIDH-LRTMSLCEAATFFALEM-------------------LN 174
             D+VL D      G R          +  +    A ++                     
Sbjct: 121 CVDMVLHDGVSVVKGQRAFSVTYAQNQMALSTLLLASKLFQRHGLMPDLPTDAAPHRSNK 180

Query: 175 IGG------------------DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
             G                   F+ K  Q      +L   +  F  V   KPVASR ES+
Sbjct: 181 PEGRISRSTSVPRSSSAVLPVCFVSKVLQCDHFAQVLAATQALFCHVRPFKPVASRPESL 240

Query: 217 EMFLLAKGFR 226
           E +++A  F+
Sbjct: 241 ERYVVATDFQ 250


>gi|213620974|ref|ZP_03373757.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 79

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%)

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            G   +D  R M L E A     ++L  GG F+VK FQG   ++ L  ++  F KV   K
Sbjct: 1   SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRK 60

Query: 208 PVASRAESVEMFLLAKGFR 226
           P +SRA S E++++A G +
Sbjct: 61  PDSSRARSREVYIVATGRK 79


>gi|322501390|emb|CBZ36469.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 335

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 69/250 (27%)

Query: 46  GWRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARIT------GSNANNTR 97
            +R +SA KLL+IN++++I    R   +VDL ++PG ++QVA  +         +     
Sbjct: 1   MYRCQSALKLLEINDRYRIFHRLRPSTVVDLAAAPGGFAQVALELMHLPENAPQSVLPPM 60

Query: 98  VVAIDILDMEPILGVKFFKFDFL-DLDSWEFIRQAIG----------------------G 134
           VVA+D   ++P+ G+   + + L      + ++ A+                        
Sbjct: 61  VVAVDQRSIDPMPGLVAVRGNILQHQRILQTVQGALSLMRAPTTSPPRVLSSAHTAPQTR 120

Query: 135 NPDLVLSDMAYPTIGHRKIDH-LRTMSLCEAATFFALEM-------------------LN 174
             D+VL D      G R          +  +    A ++                     
Sbjct: 121 CVDMVLHDGVSVVKGQRAFSVTYAQNHMALSTLLLASKLFQRRGLMPDLLTDAAPHRSSK 180

Query: 175 IGG------------------DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
             G                   F+ K  Q   +  +L   +  F+ V   KPVASR ES+
Sbjct: 181 PEGRISRSISAPRSSSAVLPVCFVSKVLQCDHSAQVLEATQALFRYVRIFKPVASRPESL 240

Query: 217 EMFLLAKGFR 226
           E +++A  F+
Sbjct: 241 ERYVVATDFQ 250


>gi|325180302|emb|CCA14705.1| PREDICTED: FtsJ methyltransferase domain containing 2like putative
           [Albugo laibachii Nc14]
          Length = 653

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 30/224 (13%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKH-------QILQSNRRIV---DLGSSPGS 80
            R   +PY + + +  ++ R+A KL +++ +        Q+L     ++   D+ + PG 
Sbjct: 134 ARSRANPYEKISNVHLFQNRAALKLAELDAQFSPKLSDPQLLPEENNVLFFADICAGPGG 193

Query: 81  WSQVAA-----RITGSNANNTRVVAIDILDMEPILGVKFFKFDFL-----DLDSWEFIRQ 130
           +++        R  G       V   ++    P +    F+ D+      D+ + E I  
Sbjct: 194 FTEYLYWQRKWRCKGWGFTLKGVCDFELEKFNPCIAADTFEIDYGVLDDGDIYAQENILS 253

Query: 131 A--------IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
                     G    LV +D  + T G        T  L       AL +L  GG F+ K
Sbjct: 254 FQKRVLASTKGRGVALVTADGGFSTDGDWNRQEFLTKRLVLCECITALCVLRQGGTFVCK 313

Query: 183 TFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            F        +++ ++   F++V   KP+ SR  + E FL+ +G
Sbjct: 314 FFDTFQDFTIELIYIMTLVFEEVSITKPIQSRPANSERFLVCRG 357


>gi|310799165|gb|EFQ34058.1| FtsJ-like methyltransferase [Glomerella graminicola M1.001]
          Length = 328

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 13/123 (10%)

Query: 10  RRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNR 69
           R  L    + R    S+  W  R   D + + A+++G ++R+A+KLL+++ K+++ +  +
Sbjct: 30  RINLAASRQTR-ASSSNSRWKMRQGRDMFAREAKVQGLKSRAAFKLLEMDAKYKLFRKGQ 88

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
            +VDL         VA   T  N    +++ IDI+  +P  GV   + +FL  D  + ++
Sbjct: 89  TVVDL---------VAVERTKPNG---QILGIDIIPAQPPKGVSTIQGNFLSPDVQDMVK 136

Query: 130 QAI 132
           + +
Sbjct: 137 EYL 139



 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 40/83 (48%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH  +M LC  A  FA + L  GG F+ K +QG    +    LK  F KV
Sbjct: 238 MMNTSGMAFRDHAGSMDLCGVALQFANDTLRNGGHFVCKFYQGSEDREFEKKLKTLFAKV 297

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR++S E + +A   +
Sbjct: 298 FREKPESSRSDSKEAYFVALRRK 320


>gi|303390693|ref|XP_003073577.1| ribosomal RNA methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302724|gb|ADM12217.1| ribosomal RNA methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 152

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
           + GV   K D         I +A+ G   DLV+ D A    G  +ID    + L  +A  
Sbjct: 1   MEGVVCIKGDITSDSCLRSIVEALEGVLADLVMCDGAPDITGIHEIDEYLQIELLMSALS 60

Query: 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L +   G  F+ K  QG  T  ++   ++ +  V+ +KP ASR ES+E FL   G +
Sbjct: 61  ASLRISKPGSSFVGKCLQGKYTEWMINHFRRFYNGVVLLKPRASRTESMECFLYCVGMK 119


>gi|62914003|gb|AAH00131.2| FTSJ3 protein [Homo sapiens]
          Length = 734

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%)

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKK 198
           VL+D A         D      L   A   A + L  GG F+ K F+      +L + ++
Sbjct: 1   VLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQ 60

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F++V   KP ASR ES E+F++ +GF
Sbjct: 61  LFRRVQATKPQASRHESAEIFVVCQGF 87


>gi|86355601|ref|YP_473269.1| MET [Hyphantria cunea nucleopolyhedrovirus]
 gi|86198206|dbj|BAE72370.1| MET [Hyphantria cunea nucleopolyhedrovirus]
          Length = 269

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I+++  + +    ++DL   PG ++        ++    RV  + +    
Sbjct: 36  RPRCWRKLAEIDKQFGVCRGVATVLDLCGGPGEFASYIL----AHNPMCRVFGVTLAANA 91

Query: 108 PI-LGVKFF-----------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           P   GV                D  + +    +  A G   DLVL+D A  + G      
Sbjct: 92  PYKRGVCTHSNFTAVLGPDATGDVFNKNVLFDLSVACGNACDLVLADGAVDSQGRENDQE 151

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRA 213
                L    T  AL  L +GG+ ++K F       +  L     HF     VKP +SR 
Sbjct: 152 QLNAPLMLRETQLALICLRLGGNCVLKVFDAFQHETLRVLQQFVCHFASWRLVKPPSSRP 211

Query: 214 ESVEMFLLAKG 224
            + E +L+  G
Sbjct: 212 SNSERYLVCFG 222


>gi|9627812|ref|NP_054099.1| putative methyl transferase [Autographa californica
           nucleopolyhedrovirus]
 gi|114680123|ref|YP_758536.1| methyltransferase [Plutella xylostella multiple
           nucleopolyhedrovirus]
 gi|1175093|sp|P41469|Y069_NPVAC RecName: Full=Uncharacterized 30.4 kDa protein in LEF3-IAP2
           intergenic region
 gi|559138|gb|AAA66699.1| putative methyl transferase [Autographa californica
           nucleopolyhedrovirus]
 gi|91982187|gb|ABE68455.1| methyltransferase [Plutella xylostella multiple
           nucleopolyhedrovirus]
          Length = 262

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 14/190 (7%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R   KL +I++K  + +     +DL   PG ++     +         V   +     
Sbjct: 36  RPRCWRKLSEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSL-NPLCKAYGVTLTNNSVCV 94

Query: 108 PILGV------KFFK-----FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
               V                D  D +    I    G   DLVL+D +    G       
Sbjct: 95  YKPTVRKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQER 154

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAE 214
               L    T   L  L  GG+ ++K F         +L     HF+K +  KP +SR  
Sbjct: 155 LNFDLIMCETQLILICLRPGGNCVLKVFDAFEHETIQMLNKFVNHFEKWVLYKPPSSRPA 214

Query: 215 SVEMFLLAKG 224
           + E +L+   
Sbjct: 215 NSERYLICFN 224


>gi|116201505|ref|XP_001226564.1| hypothetical protein CHGG_08637 [Chaetomium globosum CBS 148.51]
 gi|88177155|gb|EAQ84623.1| hypothetical protein CHGG_08637 [Chaetomium globosum CBS 148.51]
          Length = 957

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 32  RHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS--NRRIVDLGSSPGSWSQVAARIT 89
           R   DPY +   ++G ++R+A+KL++++ K+   +    + +VDLG +PGSWSQVA   T
Sbjct: 684 RQSGDPYARARHVKGLKSRAAFKLIELDAKYSFFRRGQGQVVVDLGYAPGSWSQVAVDYT 743

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
             N     V+ IDI+  +P  GV   + +FL       ++Q +
Sbjct: 744 APNGT---VLGIDIIPAQPPRGVSTIQGNFLSPGVQRMVKQVL 783



 Score = 93.8 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 36/65 (55%)

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            LC AA  FA E L  GG F+ K +QG        LL++ F++V   KP ASR ES E F
Sbjct: 880 DLCHAALTFASETLKPGGSFVCKFYQGAEDKAFENLLRQMFRRVHREKPDASRKESREAF 939

Query: 220 LLAKG 224
            +A+ 
Sbjct: 940 FVARD 944


>gi|145638913|ref|ZP_01794521.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittII]
 gi|145271885|gb|EDK11794.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittII]
          Length = 84

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGS 76
           +  +    SS  WLN H +D +VQ+A  +  R+R+ +K+ +I +  ++ +    +VDLG+
Sbjct: 1   MGKKKRSASSSRWLNEHFSDQFVQKAHKQKLRSRAYFKIDEIQQTDKLFKQGMTVVDLGA 60

Query: 77  SPGSWSQVAARITGSNANNTRVVAIDI 103
           +PG WSQ      G      RV+A DI
Sbjct: 61  APGGWSQYVVSQIGGKG---RVIACDI 84


>gi|154288380|ref|XP_001544985.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408626|gb|EDN04167.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 259

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH  +M LC AA  F+  +L  GG F+ K +QG     +   LK+ FQ V
Sbjct: 157 MMNTSGMSFRDHAGSMDLCRAALEFSFNVLKTGGHFVCKFYQGAEDKALERQLKELFQTV 216

Query: 204 IHVKPVASRAESVEMFLLAKGFRK 227
              KP +SR+ES E + +    ++
Sbjct: 217 HREKPESSRSESKEAYFIGLRRKQ 240



 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 12/70 (17%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
           + L  ++ +VDL         VA  +T  N    RVV +DI+  +P  GV   + +FL L
Sbjct: 5   KYLSPDQSVVDL---------VAVDLTRPNG---RVVGVDIIPAQPPKGVSTIQGNFLSL 52

Query: 123 DSWEFIRQAI 132
               ++R+ +
Sbjct: 53  QIQAYVREFL 62


>gi|15320719|ref|NP_203231.1| hypothetical protein [Epiphyas postvittana NPV]
 gi|2708645|gb|AAB92561.1| ORF69 homolog [Epiphyas postvittana NPV]
 gi|15213187|gb|AAK85626.1| unknown [Epiphyas postvittana NPV]
          Length = 268

 Score =  102 bits (254), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 24/211 (11%)

Query: 34  INDPYVQRAQL---EGW---RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
            +D +++RA+    +G    + R   KL +I++  ++ ++    +DL   PG ++     
Sbjct: 16  FDDAHIKRARARLFDGALERKPRCWRKLAEIDKHFKVCRNVNTALDLCGGPGEFAAYTM- 74

Query: 88  ITGSNANNTRVVAIDILDMEPILGV-----KFF-------KFDFLDLDSWEFIRQAIGGN 135
              +     RV  + ++   P   V      F          D LD +    +  A G  
Sbjct: 75  ---ARNPLCRVFGVTLIANAPYKRVVQNHSNFVNVVGPDGTGDVLDKNVLFDLSVACGNA 131

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDIL 193
            DLVL+D A    G          +L    T  AL  L +GG+ ++K F      T D+L
Sbjct: 132 CDLVLADGAVDAAGRENEQETINRALILRETQLALICLRVGGNCVLKVFDAFHNETLDVL 191

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
               +HF +    KP +SR  + E +L+   
Sbjct: 192 ERFARHFARWRLFKPPSSRPANSERYLVCIN 222


>gi|196018641|ref|XP_002118844.1| hypothetical protein TRIADDRAFT_34847 [Trichoplax adhaerens]
 gi|190578007|gb|EDV18669.1| hypothetical protein TRIADDRAFT_34847 [Trichoplax adhaerens]
          Length = 96

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
               +++LSDMA  T G R ++H+  M+L E+   F+ + L+  G  ++K F+G    + 
Sbjct: 3   NNQCNVILSDMAPNTSGTRSLNHINIMNLAESVFDFSQQFLSKNGHMIIKLFEGNKNKEF 62

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              L+KHF+ V   KP AS  +S E+F++   FR
Sbjct: 63  YNKLRKHFKNVHFFKPEASYKDSSEIFIVGL-FR 95


>gi|322505403|emb|CBZ14784.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 331

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 92/253 (36%), Gaps = 75/253 (29%)

Query: 46  GWRARSAYKLLQINEKHQILQS--NRRIVDLGSSPGSWSQVAARITG------SNANNTR 97
            +R +SA+KLL++N++++I        +VDL ++PG ++Q A  +         ++    
Sbjct: 1   MYRCQSAWKLLELNDRYRIFHQFHPSTVVDLAAAPGGFAQAALELMHIQETARPSSLPPM 60

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG----------------------- 134
           V+A+D   ++P+ G+   + + L     + I QA+ G                       
Sbjct: 61  VIAVDQRPIDPMPGLLAVRGNILQ---HQRILQAVQGVFSHMRAPTASPSRLSSSTQTVP 117

Query: 135 ---NPDLVLSDMAYPTIGHRKIDH-LRTMSLCEAATFFALEMLNIGG------------- 177
              + D+VL D      G R          +  +A   A ++    G             
Sbjct: 118 LARSVDMVLHDGVSVVKGQRAFSVTYAQNQMALSALLLAGKLFRRFGPMPDLPAEAEKHP 177

Query: 178 ------------------------DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
                                    F+ K         +L   +  F+ V   K +ASR+
Sbjct: 178 SNKRDERISHRTSAPRSSPAVLPVCFVSKVLHCHHFGQVLRATRALFRHVKTSKLLASRS 237

Query: 214 ESVEMFLLAKGFR 226
           ES+E +++A  F+
Sbjct: 238 ESLERYVVATDFQ 250


>gi|67900880|ref|XP_680696.1| hypothetical protein AN7427.2 [Aspergillus nidulans FGSC A4]
 gi|40742817|gb|EAA62007.1| hypothetical protein AN7427.2 [Aspergillus nidulans FGSC A4]
          Length = 675

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 20/113 (17%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG 79
           +    SS+ W  R + D Y + A ++G ++R+A+KLLQ                 G +PG
Sbjct: 480 QKRFSSSKRWQARQLKDHYTREAAVQGLKSRAAFKLLQ-----------------GYAPG 522

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           SWSQVA           RV+ +DI+  +P  GV   + +FLD +   ++R  +
Sbjct: 523 SWSQVALTR---TRPAGRVLGVDIIPSQPPKGVSTIQGNFLDPEVQAYVRDFV 572


>gi|119964587|ref|YP_950783.1| Mv-ORF53 peptide [Maruca vitrata MNPV]
 gi|119514430|gb|ABL76005.1| Mv-ORF53 peptide [Maruca vitrata MNPV]
          Length = 262

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG--------SNANNTRVVAI 101
           R   KL +I++K  + +     +DL   PG ++     +             N T V   
Sbjct: 38  RCWRKLSEIDKKFNVCKHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNLTCVYKP 97

Query: 102 DILDMEPILGVKFF--KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            I   +    +       D  D +    I    G   DLVL+D +    G          
Sbjct: 98  TIYKRKNFATITGPDKSGDVFDKNVIFEISVKCGNTCDLVLADGSVDVNGRENEQERLNF 157

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
            L    T   L  L  GG+ ++K F      T  +L     HF+K +  KP +SR  + E
Sbjct: 158 DLIMCETQIILICLRTGGNCVLKVFDAFQRETIQMLNKFINHFEKWVLYKPPSSRPANSE 217

Query: 218 MFLLAKG 224
            +L+   
Sbjct: 218 RYLICFN 224


>gi|302409280|ref|XP_003002474.1| ribosomal RNA methyltransferase MRM2 [Verticillium albo-atrum
           VaMs.102]
 gi|261358507|gb|EEY20935.1| ribosomal RNA methyltransferase MRM2 [Verticillium albo-atrum
           VaMs.102]
          Length = 202

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G    DH+ +M LC AA  FA + L  GG F+ K +QG    ++   L+K F KV
Sbjct: 106 MMNTSGVTFKDHVGSMDLCYAALQFASDTLKPGGHFVCKFYQGAEDKELEKQLRKLFAKV 165

Query: 204 IHVKPVASRAESVEMFLLAKGFR 226
              KP +SR +S E + +    +
Sbjct: 166 FRDKPESSRKDSKEGYFVGLNRK 188


>gi|23577881|ref|NP_703059.1| hypothetical protein [Rachiplusia ou MNPV]
 gi|23476526|gb|AAN28073.1| unknown [Rachiplusia ou MNPV]
          Length = 262

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 12/187 (6%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS--------NANNTRVVAI 101
           R   KL +I++K  + +     +DL   PG ++     +             N+  V   
Sbjct: 38  RCWRKLSEIDKKFHVCRHVNTFLDLCGGPGEFANYTMSLNPFCKAYGVTLTNNSVCVYKP 97

Query: 102 DILDMEPILGVKFF--KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            +   +    V       D  D +    I    G   DLVL+D +    G          
Sbjct: 98  TVRKRKNFTTVTGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERLNF 157

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVE 217
            L    T   L  L  GG+ ++K F         +L     HF+K I  KP +SR  + E
Sbjct: 158 DLIMCETQLILICLRPGGNCVLKVFDAFEHETIQMLNKFVNHFEKWILYKPPSSRPANSE 217

Query: 218 MFLLAKG 224
            +L+   
Sbjct: 218 RYLICFN 224


>gi|322493833|emb|CBZ29122.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 335

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 89/250 (35%), Gaps = 69/250 (27%)

Query: 46  GWRARSAYKLLQINEKHQILQSNR--RIVDLGSSPGSWSQVAARITGSNANNTR------ 97
            +R +SA KL++IN++++I    R   +VDL ++PG ++QVA  +     N  +      
Sbjct: 1   MYRCQSALKLVEINDRYRIFHRFRPSTVVDLAAAPGGFAQVALELMHLPENAPKSALSPM 60

Query: 98  VVAIDILDMEPILGVKFFKFDFLD--------LDSWEFIRQAIGGNPDLVLSDMAYPTI- 148
           VVA+D   ++P+ G+   + + L           +   +R      P ++ S    P   
Sbjct: 61  VVAVDQRPIDPMPGLVVVRGNILQHQRILRTVQSALSLMRAPPTSPPRVLSSAHTAPQTR 120

Query: 149 --------GHRKIDHLRTMSLCEAATFFAL--------------------------EMLN 174
                   G   +   R  S+  A    AL                             N
Sbjct: 121 CVDMVLHDGVSVVKGQRAFSVTYAQNQMALSSLLLGSKLFQRHGLISDLPTDAVPHRSSN 180

Query: 175 IGG------------------DFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
             G                   F+ K  Q      +L   +  F  V   KP ASR ES+
Sbjct: 181 PEGLISRSTSAPRSSSAVLPVCFVSKVLQSDHFAQVLAATQALFCHVQAFKPAASRPESL 240

Query: 217 EMFLLAKGFR 226
           E +++A  F+
Sbjct: 241 ERYVVATHFQ 250


>gi|51476892|emb|CAH18412.1| hypothetical protein [Homo sapiens]
          Length = 92

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 44/83 (53%)

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQK 202
           MA    G R +DH R +SLC        ++L  GG FL KT+ G  +  +   L + FQ 
Sbjct: 1   MAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQN 60

Query: 203 VIHVKPVASRAESVEMFLLAKGF 225
           V  +KP ASR ES E++ LA  +
Sbjct: 61  VRIIKPEASRKESSEVYFLATQY 83


>gi|70933062|ref|XP_737958.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56513783|emb|CAH75136.1| hypothetical protein PC000546.00.0 [Plasmodium chabaudi chabaudi]
          Length = 92

 Score = 96.5 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 15 QKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           K+ N+    SS+ W+ R I D YV +A+ E +R+R+A+KL++++ K+  L+ N+ I+D+
Sbjct: 22 PKIYNKKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDI 80

Query: 75 GSSPGSWSQ 83
          GS PGSW Q
Sbjct: 81 GSYPGSWCQ 89


>gi|149028400|gb|EDL83785.1| rCG22889, isoform CRA_b [Rattus norvegicus]
          Length = 187

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            A   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  S+E F + +
Sbjct: 1   MALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNSSIEAFAVCQ 60

Query: 224 GF 225
           G+
Sbjct: 61  GY 62


>gi|302498226|ref|XP_003011111.1| hypothetical protein ARB_02633 [Arthroderma benhamiae CBS 112371]
 gi|291174659|gb|EFE30471.1| hypothetical protein ARB_02633 [Arthroderma benhamiae CBS 112371]
          Length = 253

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 76/226 (33%), Gaps = 61/226 (26%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGS-----NANNTRVVAIDILDMEP-------- 108
             + +   R+V +   P    +  + I G+          +    D     P        
Sbjct: 12  FNLTKPRGRVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQLPALS 71

Query: 109 ---------ILGVKFFKFDF-LDLDSWEFIRQAIG----------GNPDLVLSDMAYPTI 148
                      GVK       L+  S   I +  G          G+ D++LSDM   T 
Sbjct: 72  EQGKSSPTTEPGVKTDGGYIDLERSSSAHINKGDGAAPLPMIAKVGSVDVILSDMLMNTS 131

Query: 149 GHRKIDHLRTM-------SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
           G +  DHL +M        LC AA  FA  +L  GG F+ K +QG    D    LK+ F 
Sbjct: 132 GTKSRDHLGSMVCVELPEELCNAALDFASNVLKEGGHFVCKYYQGPGEKDFENELKRLFH 191

Query: 202 KVIHVKPVASRA---------------------ESVEMFLLAKGFR 226
           +V   KP +SR+                     ES E + +    R
Sbjct: 192 RVYREKPESSRSVSLLYQLVFLYLPGLANEYAQESKEAYFIGIRRR 237


>gi|70937915|ref|XP_739701.1| ribosomal RNA methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56516893|emb|CAH75037.1| ribosomal RNA methyltransferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 245

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               G   ID      L  ++      +L +GG+F+ K F+G  T  ++  L K F+K+ 
Sbjct: 1   PDITGMNDIDEFIQSQLILSSLKVCCSVLKVGGNFISKIFRGEYTGLLIFHLNKFFEKIY 60

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP +SR +S+E FL+   F
Sbjct: 61  VCKPQSSRNKSLESFLVCLNF 81


>gi|198425300|ref|XP_002121619.1| PREDICTED: similar to FtsJ methyltransferase domain containing 2
           [Ciona intestinalis]
          Length = 797

 Score = 95.4 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 31/208 (14%)

Query: 50  RSAYKLLQINE--KHQILQS---NRR----IVDLGSSPGSWS-------QVAARITG--- 90
           R+A K+  ++        Q             D+ + PG +S       +  A+  G   
Sbjct: 201 RAAMKMANMDSILDFMFTQPKCLGNNEILYFADVCAGPGGFSEYILWKKKWRAKGFGFTL 260

Query: 91  ---SNANNTRVVAIDILDMEPILGVKFF--KFDFLDLDSWEFIRQAI-----GGNPDLVL 140
              ++       A +    EP  GV       D ++  + E  +  +           V+
Sbjct: 261 KGPNDFKLGDFFAANSEFFEPHYGVNGIDGNGDIMNTSNLEEFQDFVLTNTNEKGVHFVM 320

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKK 198
           +D  +   G   I  + T  L       AL +L +GG+F++KTF      +N ++ LL+ 
Sbjct: 321 ADGGFSVEGQENIQEILTKQLLMCQIVCALSILRVGGNFVLKTFDLFTPFSNGLIYLLRI 380

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ V   KPV SR  + E + + +G+R
Sbjct: 381 AFENVAIYKPVTSRPANSERYAVCQGYR 408


>gi|221041826|dbj|BAH12590.1| unnamed protein product [Homo sapiens]
          Length = 192

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            A   A  +L  GG F+ K F+G     +   L+  F  V+  KP +SR  S+E F + +
Sbjct: 1   MALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQ 60

Query: 224 GF 225
           G+
Sbjct: 61  GY 62


>gi|291236302|ref|XP_002738079.1| PREDICTED: FtsJ methyltransferase domain containing 2-like
           [Saccoglossus kowalevskii]
          Length = 829

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 37/214 (17%)

Query: 50  RSAYKLLQINEKHQI------------LQSNRRIV---DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  ++                 L     ++   D+ + PG +S+     +   + 
Sbjct: 228 RAAMKMANMDYVFDFMFTNPKTLDGQPLVKGNELLYFADICAGPGGFSEYVLWRKNWHAK 287

Query: 93  ANNTRVVAIDILD-----------MEPILGVKFFKFD---FLDLDSWEFIRQAI----GG 134
                +   +               EP  GV     D   +   +  EF R  +    G 
Sbjct: 288 GFGFTLKGANDFKLEDFFSTSPELFEPYYGVDGIDGDGNIYRSDNLKEFQRFVLQNTDGK 347

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDI 192
               V++D  +   G   I  + +  L       AL ++  GG+F+ KTF      +  +
Sbjct: 348 GVHFVMADGGFSVAGQENIQEILSKQLLLCQFLCALSIIREGGNFVCKTFDLFTPFSVGL 407

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + LL + FQ+V   KPV SR  + E +++ +G R
Sbjct: 408 IYLLYRAFQRVTLFKPVTSRPANSERYVVCQGLR 441


>gi|24639619|ref|NP_572148.2| CG6379 [Drosophila melanogaster]
 gi|74872724|sp|Q9W4N2|MTR1_DROME RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|7290461|gb|AAF45915.1| CG6379 [Drosophila melanogaster]
          Length = 788

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 34/211 (16%)

Query: 50  RSAYKLLQINEKHQIL------QSNRRIV---------DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+     +       + + +V         D+ + PG +S+     +   + 
Sbjct: 175 RAAVKMANIDSMCNFMFTNPRDPAGQTLVAPDELLYFTDMCAGPGGFSEYVLYRKSWEAK 234

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD----------FLDLDSW----EFIRQAIGGNPDL 138
                +   +   +E         FD            D  +     E+IR         
Sbjct: 235 GFGFTLRGANDFKLEKFFAASPESFDTFYGVKEDGNIFDESNQDSLNEYIRMHTPQGVHF 294

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G + I  + +  L       AL++L   G F+ K F      +  ++ L+
Sbjct: 295 AMADGGFSVEGQKNIQEILSKQLYLCQFLTALKILRPNGSFVCKVFDLFTPFSVGLVYLM 354

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K FQ++  +KP +SR  + E +L+ K +++
Sbjct: 355 YKCFQQIAIIKPNSSRPANSERYLVCK-YKR 384


>gi|17946316|gb|AAL49198.1| RE63452p [Drosophila melanogaster]
          Length = 788

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 34/211 (16%)

Query: 50  RSAYKLLQINEKHQIL------QSNRRIV---------DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+     +       + + +V         D+ + PG +S+     +   + 
Sbjct: 175 RAAVKMANIDSMCNFMFTNPRDPAGQTLVAPDELLYFTDMCAGPGGFSEYVLYRKSWEAK 234

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD----------FLDLDSW----EFIRQAIGGNPDL 138
                +   +   +E         FD            D  +     E+IR         
Sbjct: 235 GLGFTLRGANDFKLEKFFAASPESFDTFYGVKEDGNIFDESNQDSLNEYIRMHTPQGVHF 294

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G + I  + +  L       AL++L   G F+ K F      +  ++ L+
Sbjct: 295 AMADGGFSVEGQKNIQEILSKQLYLCQFLTALKILRPNGSFVCKVFDLFTPFSVGLVYLM 354

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K FQ++  +KP +SR  + E +L+ K +++
Sbjct: 355 YKCFQQIAIIKPNSSRPANSERYLVCK-YKR 384


>gi|257206228|emb|CAX82765.1| putative calcium channel, voltage-dependent, L type, alpha 1D
           subunit [Schistosoma japonicum]
          Length = 87

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVA 85
           +R   D Y + A+ EGWRARSAYKLLQI++++ IL         R+VDL ++PGSWSQV 
Sbjct: 5   SRDKRDIYYRLAKEEGWRARSAYKLLQIDDEYGILSSTENIPLERVVDLCAAPGSWSQVL 64

Query: 86  A-RITGSNANNTRVVAIDILDM 106
           + R+  S + + R   + I  +
Sbjct: 65  SKRLWESKSPDDRKSVLPIFRI 86


>gi|195995913|ref|XP_002107825.1| hypothetical protein TRIADDRAFT_51728 [Trichoplax adhaerens]
 gi|190588601|gb|EDV28623.1| hypothetical protein TRIADDRAFT_51728 [Trichoplax adhaerens]
          Length = 889

 Score = 93.0 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 39/216 (18%)

Query: 50  RSAYKLLQINE--KHQILQSNRR-------------IVDLGSSPGSWSQVA--ARITGSN 92
           R+A K+  ++   K+                       D+ + PG +++     R   + 
Sbjct: 198 RAAMKMANLDYVYKYIFTNPRDDKGNEKIRSLDILYFADICAGPGGFTEYVLWKRRWHAK 257

Query: 93  A--------------NNTRVVAIDILDMEPILGVKFFKFDFLDLDS------WEFIRQAI 132
                            T  +A      EP  GV     D     +       EF+R + 
Sbjct: 258 GFGITLKDPKNASDFKLTDFLAGTPETFEPYYGVNGVNGDGDVTRTENLRAFAEFVRSSS 317

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTN 190
            G     ++D  +   G   I  + +  L       A+ +L  GG+F+ K F      + 
Sbjct: 318 EGGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLCAISVLREGGNFVCKLFDIFTPFSV 377

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L L  + F+++  VKP+ SR  + E +++ +G+R
Sbjct: 378 GLLYLFYRIFRRISLVKPLTSRPANSERYIVCEGYR 413


>gi|82595412|ref|XP_725839.1| cell division protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480991|gb|EAA17404.1| putative cell division protein [Plasmodium yoelii yoelii]
          Length = 443

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPV 209
              ID      L  ++      +L IGG+F+ K F+G  T  ++  L K F+K+   KP 
Sbjct: 1   MNDIDEFIQSQLILSSLKVCCSVLKIGGNFISKIFRGEYTGLLIFYLNKFFEKIYVCKPQ 60

Query: 210 ASRAESVEMFLLAKGF 225
           +SR +S+E FL+   F
Sbjct: 61  SSRNKSLESFLVCLNF 76


>gi|194887980|ref|XP_001976842.1| GG18562 [Drosophila erecta]
 gi|190648491|gb|EDV45769.1| GG18562 [Drosophila erecta]
          Length = 788

 Score = 91.9 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 34/211 (16%)

Query: 50  RSAYKLLQINEKHQIL------QSNRRIV---------DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+     +       + + +V         D+ + PG +S+     +   + 
Sbjct: 175 RAAVKMANIDSMCDFMFTNPRDPAGQSLVAPDELLYFTDMCAGPGGFSEYVLFRKSWEAK 234

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD----------FLDLDSW----EFIRQAIGGNPDL 138
                +   +   +E         FD            D  +     E+IR         
Sbjct: 235 GFGFTLRGANDFKLEKFFAASPESFDTFYGVKEDGNIFDESNQDSLNEYIRMHTPQGVHF 294

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G   I  + +  L       AL++L   G F+ K F      +  ++ L+
Sbjct: 295 AMADGGFSVEGQENIQEILSKQLYLCQFLTALKILRPNGSFVCKVFDLFTPFSVGLVYLM 354

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K FQ++  +KP +SR  + E +L+ K +++
Sbjct: 355 YKCFQQIAIIKPNSSRPANSERYLVCK-YKR 384


>gi|123397252|ref|XP_001301053.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
 gi|121882182|gb|EAX88123.1| FtsJ-like methyltransferase family protein [Trichomonas vaginalis
           G3]
          Length = 690

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 34/212 (16%)

Query: 50  RSAYKLLQINEKHQI---------------LQSNRRIVDLGSSPGSWSQVAA-RITGSNA 93
           R+A K+  ++                    L+      D+ + PG ++     R+ G   
Sbjct: 265 RAAMKMANLDAIFNFTNSPEFPNLAPNCGKLEDYFYFADICAGPGGFTDYLYWRLDGRAK 324

Query: 94  NNTRVVAIDILDMEPILGVKFF-----------KFDFLDLDSWEFIRQAIGGN-----PD 137
                +A D    +P + +                +  + D+ E +   I          
Sbjct: 325 GFGMTLAGDHDWAQPEMFLSTIPNFTKVYGPEGNGNIFNPDNIEDLYNTIKTETNNKMVQ 384

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCL 195
           LV +D      G           L       AL +L  GG FL KTF      + ++L L
Sbjct: 385 LVTADGGTAVDGEENAQEQLHKRLVLCQFLTALRVLRKGGSFLCKTFDVYTDFSVELLYL 444

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L + F +   +KP  SR  + E +++  G R+
Sbjct: 445 LAQCFNRFCIIKPYTSRPANSERYVVGLGLRE 476


>gi|307184308|gb|EFN70766.1| Uncharacterized protein KIAA0082-like protein [Camponotus
           floridanus]
          Length = 775

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 28/205 (13%)

Query: 50  RSAYKLLQINEKHQI-------LQSNR--RIVDLGSSPGSWSQVA-------ARITGSNA 93
           R+A K+  IN+           L  +      D+ + PG +S+         A+  G   
Sbjct: 179 RAAVKMANINKACNFMFTDPKDLHPDDLLYFADVCAGPGGFSEYILSRKKWHAKGFGFTL 238

Query: 94  NNTRVVAIDILDMEPILGVKFFKF-----DFLDLDSWEFIRQAI-----GGNPDLVLSDM 143
            N     +D     P      F       D  D  + E  R  I     G     ++SD 
Sbjct: 239 KNENDFTLDEFFAGPCETFHPFYGSKENGDVFDPQNQEEFRSLIMKHTYGKGVHFMMSDG 298

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQ 201
            +   G   I  + +  L       AL ++  GG F+ K F      +  ++ L+ + F+
Sbjct: 299 GFSVEGQENIQEILSKQLYLCQCLVALMIVRPGGHFVTKLFDLFTPFSIGLVYLMYRCFE 358

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            +   KP +SR  + E +L+ K  +
Sbjct: 359 NICIFKPNSSRPANSERYLICKRKK 383


>gi|22326560|ref|NP_568086.2| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
 gi|332002930|gb|AED90313.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
          [Arabidopsis thaliana]
          Length = 61

 Score = 91.5 bits (226), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 31 NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
          +R   D Y ++A+ EGWRARSA+KLLQI+E+  I +  +R+VDL ++PGSWSQ
Sbjct: 5  SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57


>gi|290996676|ref|XP_002680908.1| predicted protein [Naegleria gruberi]
 gi|284094530|gb|EFC48164.1| predicted protein [Naegleria gruberi]
          Length = 575

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 39/231 (16%)

Query: 31  NRHINDPYVQRAQLEGWRARSAYKLLQIN------------EKHQILQSNRRIVDLGSSP 78
            R+ ++PY +  +   ++ R+A KL  I+            E++ IL       D+ + P
Sbjct: 221 ARYRSNPYERIGRSI-FQNRAAIKLANIDRISDLTTLVRLPEENGIL----YFADICAGP 275

Query: 79  GSWSQVAARITGSNANNT-------RVVAIDILDMEPILGVKFF--------KFDFLDLD 123
           G +++       ++           +     +    P      F          D    +
Sbjct: 276 GGFTEYLYYRFKTDKAKGWGFTLKNKKDDWKLNRFNPESPHDNFEVNYGEDGTGDITKNE 335

Query: 124 SWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           +   + +AI     G    LV +D  +   G        T  L        L +   GG 
Sbjct: 336 NIRALSKAIDQGTNGRGVALVTADGGFSVHGVENSQEYLTHQLVLCQILTGLMITRRGGS 395

Query: 179 FLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F+ K F   T  +  ++ +L ++++KV+ VKP++SR  + E +++ KG RK
Sbjct: 396 FVCKLFDLNTWFSASLMYILYQNYEKVMIVKPLSSRPANSERYVICKGLRK 446


>gi|2695746|emb|CAA11034.1| Pmt2 [Schizosaccharomyces pombe]
          Length = 663

 Score = 91.1 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            +   A E L  GG F+ K F+    N++L + K+ F KV   KP +SR  S E+F++ +
Sbjct: 1   MSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCR 60

Query: 224 GFR 226
           G++
Sbjct: 61  GYK 63


>gi|195340901|ref|XP_002037051.1| GM12706 [Drosophila sechellia]
 gi|194131167|gb|EDW53210.1| GM12706 [Drosophila sechellia]
          Length = 788

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 78/211 (36%), Gaps = 34/211 (16%)

Query: 50  RSAYKLLQINEKHQIL------QSNRRIV---------DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+     +         + +V         D+ + PG +S+     +   + 
Sbjct: 175 RAAVKMANIDSMCDFMFTDPRDPDGQTLVGRDELLYFTDMCAGPGGFSEYVLYRKSWEAK 234

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD----------FLDLDSW----EFIRQAIGGNPDL 138
                +   +   +E         FD            D  +     E+IR         
Sbjct: 235 GFGFTLRGANDFKLEKFFAASPESFDTFYGVKDDGNIFDESNQDSLNEYIRMHTPQGVHF 294

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G + I  + +  L       AL++L   G F+ K F      +  ++ L+
Sbjct: 295 AMADGGFSVEGQKNIQEILSKQLYLCQFLTALKILRPNGSFICKLFDLFTPFSVGLVYLM 354

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            + FQ++  +KP +SR  + E +L+ K +++
Sbjct: 355 YQCFQQIAIIKPNSSRPANSERYLVCK-YKR 384


>gi|307192784|gb|EFN75874.1| Uncharacterized protein KIAA0082-like protein [Harpegnathos
           saltator]
          Length = 855

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 84/239 (35%), Gaps = 37/239 (15%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRR----- 70
           KV+ R  +  S             +  +  G+  R+A K+  IN+    + ++       
Sbjct: 229 KVEMRKARTRSNA----------YETIRTAGFLNRAAVKMANINKACNFMFTDGVDMKDE 278

Query: 71  ---IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-------PILGVKFFKF--- 117
                D+ + PG +S+        +A        +  D +       P      F     
Sbjct: 279 LLYFADVCAGPGGFSEYILSRKKWHAKGFGFTLKNENDFKLDEFFAGPCETFHPFYGSKD 338

Query: 118 --DFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
             D  D  +    R  I     G     ++SD  +   G   I  + +  L       AL
Sbjct: 339 NGDVYDPKNQIEFRDLIMKHTYGKGVHFMMSDGGFSVEGKENIQEILSKRLYLCQCLIAL 398

Query: 171 EMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            ++  GG F+ K F      +  ++ L+ + F  V   KP +SR  + E +L+ KG ++
Sbjct: 399 MIVRTGGHFVTKLFDLFTPFSVGLVYLMYRCFDSVCIFKPNSSRPANSERYLICKGKKE 457


>gi|195163974|ref|XP_002022824.1| GL14540 [Drosophila persimilis]
 gi|194104847|gb|EDW26890.1| GL14540 [Drosophila persimilis]
          Length = 589

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGVKFFKFD----------FL 120
           D+ + PG +S+     ++  +      +   +   +E         FD            
Sbjct: 213 DMCAGPGGFSEYVLFRKLWEAKGFGFTLRGANDFKLEKFFAASPESFDTYYGIKDDGNIF 272

Query: 121 DLDSW----EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           D  +     E+IR+         ++D  +   G   I  + +  L       AL++L   
Sbjct: 273 DDQNQDSLNEYIRRHTPDGVHFAMADGGFSVEGEENIQEILSKQLYLCQFLTALKILRKN 332

Query: 177 GDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G+F+ K F      +  ++ L+ K F ++  +KP +SR  + E +L+ K +++
Sbjct: 333 GNFVCKVFDLFTPFSVGLIYLMYKCFHQIAIIKPNSSRPANSERYLVCK-YKQ 384


>gi|326490970|dbj|BAJ98120.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 85

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT--------RV 98
           +RARSAYKLLQI++   I Q  +R+VDL  +PGSWSQV  +  G              R+
Sbjct: 2   YRARSAYKLLQIDDIFHIFQDVQRVVDLCGAPGSWSQVCRKKLGEKGLFASREEGQGERI 61

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           V++D+ +  PI  V     D  
Sbjct: 62  VSVDLQETAPIDNVHHIVGDIT 83


>gi|195048585|ref|XP_001992557.1| GH24820 [Drosophila grimshawi]
 gi|193893398|gb|EDV92264.1| GH24820 [Drosophila grimshawi]
          Length = 793

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 33/208 (15%)

Query: 50  RSAYKLLQINE--KHQILQSNR-------------RIVDLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+   ++   +                   D+ + PG +S+     +   + 
Sbjct: 177 RAAVKMANIDSICEYMFTEPRDPQGNTLLGHNELLYFADICAGPGGFSEYVLYRKSWEAK 236

Query: 93  ANNTRVVAIDILDMEPILGV-----KFFKFD-----FLDLDSWE----FIRQAIGGNPDL 138
                +   +   +E            F  D       D  + +    +IR+        
Sbjct: 237 GFGFTLRGANDFKLERFFAASPESFDAFYGDKDDGNIFDPSNQDSLNNYIRKHTPHGVHF 296

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G   I  + +  L       AL++L + G F+ K F      +  ++ L+
Sbjct: 297 AMADGGFSVEGQENIQEILSKQLYLCQFVTALKILRVNGSFVCKLFDLFTPFSVGLVYLM 356

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKG 224
            K F ++  +KP +SR  + E +++ K 
Sbjct: 357 YKCFNQIAIIKPNSSRPANSERYIVCKN 384


>gi|291336704|gb|ADD96245.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C1388]
          Length = 111

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 48/71 (67%)

Query: 22  CQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSW 81
            + S ++W+N+H  D YV+ +Q   +R+R+ +KL +I EK+ I +S++ I+DLGS+PGSW
Sbjct: 37  KKESIKNWVNKHSKDRYVKLSQTGNYRSRAFHKLHEIQEKYSIFKSSQNILDLGSAPGSW 96

Query: 82  SQVAARITGSN 92
           S+  +R     
Sbjct: 97  SEYVSRNFKEK 107


>gi|195477219|ref|XP_002100135.1| GE16874 [Drosophila yakuba]
 gi|194187659|gb|EDX01243.1| GE16874 [Drosophila yakuba]
          Length = 788

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 77/211 (36%), Gaps = 34/211 (16%)

Query: 50  RSAYKLLQINEKHQIL------QSNRRIV---------DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+     +       +   +V         D+ + PG +S+     +   + 
Sbjct: 175 RAAVKMANIDSMCDFMFTNPRDPAGESLVAPDELLYFTDMCAGPGGFSEYVLFRKSWEAK 234

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD----------FLDLDSWEFIRQAIGGN----PDL 138
                +   +   +E         FD            D  + + + + +  +       
Sbjct: 235 GFGFTLRGANDFKLEKFFAASPESFDTFYGVKEDGNIFDESNQDSLNEYVRMHTPQGVHF 294

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G   I  + +  L       AL++L   G F+ K F      +  ++ L+
Sbjct: 295 AMADGGFSVEGQENIQEILSKQLYLCQFLTALKILRPNGSFVCKVFDLFTPFSVGLVYLM 354

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            K F ++  +KP +SR  + E +L+ K +++
Sbjct: 355 YKCFHQIAIIKPNSSRPANSERYLVCK-YKR 384


>gi|194764414|ref|XP_001964325.1| GF21495 [Drosophila ananassae]
 gi|190619250|gb|EDV34774.1| GF21495 [Drosophila ananassae]
          Length = 789

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 21/174 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNA-----------NNTRVVAIDILDMEPILGVKFFKFDF 119
           D+ + PG +S+     +   +                +  A      +   GVK    + 
Sbjct: 213 DMCAGPGGFSEYVLHRKSWEAKGFGFTLRGANDFKLDKFFAASPEPFDAYYGVK-EDGNI 271

Query: 120 LDLDSWE----FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
            D  + +    +IR+         ++D  +   G   I  + +  L       AL++L  
Sbjct: 272 FDEANQDSLNDYIRRHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLTALKILRE 331

Query: 176 GGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            G F+ K F      +  ++ L+ K F ++  +KP +SR  + E +L+ K +++
Sbjct: 332 NGSFVCKVFDLFTPFSVGLVYLMYKCFHQISIIKPNSSRPANSERYLVCK-YKR 384


>gi|83286571|ref|XP_730220.1| cell division protein FtsJ [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489880|gb|EAA21785.1| FtsJ cell division protein, putative [Plasmodium yoelii yoelii]
          Length = 874

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
           A         D      L  ++   A + L  GG F+ K F+      ++ +L+K F +V
Sbjct: 3   APNVGTTYSYDSFNQNILVLSSIKLAYKFLTKGGIFITKVFRNEEYVSLIWVLEKLFGEV 62

Query: 204 IHVKPVASRAESVEMFLLAKGF 225
            H+KP +SR  S E++L+   F
Sbjct: 63  KHIKPRSSREISSEIYLIGLNF 84


>gi|125982897|ref|XP_001355214.1| GA19551 [Drosophila pseudoobscura pseudoobscura]
 gi|54643527|gb|EAL32271.1| GA19551 [Drosophila pseudoobscura pseudoobscura]
          Length = 785

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGVKFFKFD----------FL 120
           D+ + PG +S+     ++  +      +   +   +E         FD            
Sbjct: 213 DMCAGPGGFSEYVLFRKLWEAKGFGFTLRGANDFKLEKFFAASPESFDTYYGIKDDGNIF 272

Query: 121 DLDSW----EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           D  +     E+IR+         ++D  +   G   I  + +  L       AL++L   
Sbjct: 273 DDQNQDSLNEYIRRHTPDGVHFAMADGGFSVEGEENIQEILSKQLYLCQFLTALKILRKN 332

Query: 177 GDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           G+F+ K F      +  ++ L+ K F ++  +KP +SR  + E +L+ K +++
Sbjct: 333 GNFVCKVFDLFTPFSVGLIYLMYKCFHQIAIIKPNSSRPANSERYLVCK-YKQ 384


>gi|332031624|gb|EGI71096.1| S-adenosyl-L-methionine-dependent methyltransferase ftsjd2
           [Acromyrmex echinatior]
          Length = 764

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 28/206 (13%)

Query: 50  RSAYKLLQINEKHQI-LQSNRRI--------VDLGSSPGSWSQVA-------ARITGSNA 93
           R+A K+  I+        + + +         D+ + PG +S+         A+  G   
Sbjct: 143 RAAVKMANIDRACDFMFTNPKNVDPNELLYFADVCAGPGGFSEYILSKKKWHAKGFGFTL 202

Query: 94  NNTRVVAIDILDMEPILGVKFFKF-----DFLDLDSWEFIRQAI-----GGNPDLVLSDM 143
            N    ++D     P      F       D  D  +    R  +     G     ++SD 
Sbjct: 203 KNENDFSLDDFFAGPCETFHPFYGSKGNGDVFDTQNQREFRSIVMGHTDGKGVHFMMSDG 262

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQ 201
            +   G   I  + +  L       AL ++  GG F+ K F      +  ++ L+   F+
Sbjct: 263 GFSVEGQENIQEILSKQLYLCQCLVALMIVRPGGHFVTKLFDLFTSFSVGLVYLMYHCFE 322

Query: 202 KVIHVKPVASRAESVEMFLLAKGFRK 227
            +   KP  SR  + E +L+ K  +K
Sbjct: 323 SISIFKPNTSRPANSERYLICKRKKK 348


>gi|153217142|ref|ZP_01950906.1| cell division protein FtsJ [Vibrio cholerae 1587]
 gi|124113835|gb|EAY32655.1| cell division protein FtsJ [Vibrio cholerae 1587]
          Length = 60

 Score = 88.4 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              ++L   G F+VK FQG   +D +  ++  F+ V   KP +SR+ S E+F++A G++
Sbjct: 1   MCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKVVKIRKPDSSRSRSREVFIVATGYK 59


>gi|195425949|ref|XP_002061219.1| GK10359 [Drosophila willistoni]
 gi|194157304|gb|EDW72205.1| GK10359 [Drosophila willistoni]
          Length = 789

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 73  DLGSSPGSWSQVA--ARITGSNA-----------NNTRVVAIDILDMEPILGVK----FF 115
           D+ + PG +S+     +   +                +  A      +P  GV      F
Sbjct: 213 DMCAGPGGFSEYVLFRKSWEAKGFGFTLRGANDFKLEKFFAASPESFDPFYGVHDDGNIF 272

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             D       E+IR+         ++D  +   G   I  + +  L       AL++L  
Sbjct: 273 NQD-NQDSLNEYIRKHTPQGVHFAMADGGFSVEGQENIQEILSKQLYLCQFLTALKILRE 331

Query: 176 GGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            G+F+ K F      +  ++ L+ K F ++  +KP +SR  + E +L+ K  R
Sbjct: 332 NGNFVCKVFDLFTPFSVGLVYLMYKSFYQIAIIKPNSSRPANSERYLVCKNKR 384


>gi|290992761|ref|XP_002679002.1| predicted protein [Naegleria gruberi]
 gi|284092617|gb|EFC46258.1| predicted protein [Naegleria gruberi]
          Length = 570

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 43/213 (20%)

Query: 50  RSAYKLLQIN---------------EKHQILQSNRRIVDLGSSPGSWSQVAARITG---- 90
           R+A KL  I+               E++ +L       D+ + PG +++           
Sbjct: 168 RAAVKLANIDLVTDLTSETSLPRLVEENGVL----YFADICAGPGGFTEYLYYRYKTSKA 223

Query: 91  --------SNANNTRVVAIDIL----DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD- 137
                   ++ ++ ++   +      + E   GV     D    ++   +  A+    + 
Sbjct: 224 KGWGFTLKNDKDDWKLEKFNNESPCSNFELNYGVDG-TGDITKNENMLCLDDAVNRGTNN 282

Query: 138 ----LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TND 191
               LV +D  +   G        T  L       AL  L  GG F+ K F   T  +  
Sbjct: 283 RGLALVTADGGFCVDGVENSQEYLTQQLVLCQFLTALLTLRKGGCFVCKLFDLNTWFSAS 342

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++ ++ ++F+KV   KP +SR  + E +++ KG
Sbjct: 343 LIYVMYQYFEKVTIFKPFSSRPANSERYIVCKG 375


>gi|67993605|ref|NP_001018225.1| SAM-dependent methyltransferase [Schizosaccharomyces pombe 972h-]
 gi|74622209|sp|Q8TFH4|YIKA_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase PB17E12.10c;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|19571753|emb|CAD27503.1| SAM-dependent methyltransferase [Schizosaccharomyces pombe]
          Length = 301

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 74/215 (34%), Gaps = 64/215 (29%)

Query: 51  SAYKLLQ-INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           +  K ++ IN++HQ+ +  + +VDLG +PG WS +AAR  G      RV+A DI+     
Sbjct: 58  ANEKFIEKINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVG---LFGRVIACDIIPCRLP 114

Query: 110 LGVKFFKFDFLDLDSWEFIRQA-------------------------------------- 131
                 + + L ++    I +A                                      
Sbjct: 115 ENSSMIQGNILSMEIQLEIAKAAIRSRNSFFRNQQDHNSASIPYLQSVFEEERDTKEKAK 174

Query: 132 -IGGNPDLVLSDMAYP---------------------TIGHRKIDHLRTMSLCEAATFFA 169
               + D+++SD+  P                            D L ++ L +AA  FA
Sbjct: 175 IEDLSADVIMSDLGPPFPMVQGFEFWISKLPYLAMQTNEHLAVKDELDSLYLAQAALLFA 234

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
           ++ L   G FL K  +          L   F+ V 
Sbjct: 235 IKALKPDGIFLCKVLESSHLRSFAEDLSMCFKCVK 269


>gi|221114237|ref|XP_002154859.1| PREDICTED: similar to FtsJ methyltransferase domain containing 2
           [Hydra magnipapillata]
          Length = 775

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 75/214 (35%), Gaps = 36/214 (16%)

Query: 50  RSAYKLLQINEKH------QILQSNRRIVDL------GSSPGSWSQVAA----------- 86
           R+A K+ +I+          I +     +DL       + PG +S+              
Sbjct: 179 RAAMKMAEIDASFDYMFTNHIERDLNNPLDLLYFADICAGPGGFSEYVFWRSKWRAKGFG 238

Query: 87  ----RITGSNANNTRVVAIDILDMEPILGVKFFKFD--FLDLDSWEFIRQAI-----GGN 135
                   ++ N    +A      +   G   +  D      ++    R+ +        
Sbjct: 239 MTIKAEWANDFNLADYIAGTPESFDCFYGEGGYNGDGDIFKKENLIAFRKYVLENSDNKG 298

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDIL 193
              V++D  +   G   I  + +  L       AL +L  GG F+ K F      +  ++
Sbjct: 299 LHFVMADGGFSVEGQENIQEILSKQLYLCQFLCALSVLRKGGHFICKVFDLFTPFSIGLV 358

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            L+ + F ++   KPV SR  + E +L+ K  R+
Sbjct: 359 YLMYRAFDQICIFKPVTSRPANSERYLICKDLRE 392


>gi|189211395|ref|XP_001942028.1| cell division protein ftsj [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978121|gb|EDU44747.1| cell division protein ftsj [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 79

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           M LC AA  FA + L  GG F+ K ++G         +K+ F KV   KP +SRAES E 
Sbjct: 1   MDLCMAAMTFAFDTLKTGGHFVCKYYKGSEEKAFETRMKRLFAKVHREKPDSSRAESKEA 60

Query: 219 FLLAKGFRK 227
           + +    ++
Sbjct: 61  YFVGLRRKE 69


>gi|70933466|ref|XP_738102.1| ribosomal RNA methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56514043|emb|CAH74365.1| ribosomal RNA methyltransferase, putative [Plasmodium chabaudi
           chabaudi]
          Length = 97

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
           DHL +  L  + T F  + +NIGG ++VK + G  T+++   LK  FQ V   KP ASR+
Sbjct: 3   DHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTDNLKTYLKTIFQYVNTAKPKASRS 62

Query: 214 ESVEMFLLAKGF 225
           ES E++L+ + F
Sbjct: 63  ESREIYLVCRNF 74


>gi|71747946|ref|XP_823028.1| methyltransferase [Trypanosoma brucei TREU927]
 gi|122078440|sp|Q38AH0|MTR1_TRYBB RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           Short=TbMTr1
 gi|70832696|gb|EAN78200.1| methyltransferase, putative [Trypanosoma brucei]
          Length = 370

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 29/207 (14%)

Query: 47  WRARSAYKLLQINEKHQI---LQSNRR-------IVDLGSSPGSWSQVAARITGSNANNT 96
           +R R+ +KL +  E   +   L+            VD+   PG++SQ    +   +    
Sbjct: 88  FRNRAGHKLHETMEAVGLWEYLKGGATRAKGTFTFVDVCGGPGAFSQALFAMGKEHKLRL 147

Query: 97  RVVAIDILDME--------------PILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLS 141
           R   + + +++              P  G+     D   L++ E +       N  LV++
Sbjct: 148 RGFGLTLRNVKGLDWYTDLPSRSFFPCYGIDG-TGDVFKLENIESLCSLTCKENVRLVVA 206

Query: 142 DMAYPT-IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKK 198
           D  +             +  +       A+++L  GG F++K F      T  IL L   
Sbjct: 207 DGGFDVPTEVVNFQETISCRIVYGQWLSAVKLLRPGGCFVLKLFDCFSPFTRAILFLTTH 266

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ V  VKP  SR  + E +L+  GF
Sbjct: 267 LYESVQVVKPRHSRVVNSERYLVCIGF 293


>gi|195133504|ref|XP_002011179.1| GI16152 [Drosophila mojavensis]
 gi|193907154|gb|EDW06021.1| GI16152 [Drosophila mojavensis]
          Length = 1022

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 34/210 (16%)

Query: 50  RSAYKLLQINE--KHQILQSNRR-------------IVDLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+   ++       +               D+ + PG +S+     +   + 
Sbjct: 380 RAAVKMANIDSLCQYMFTDPRDKNGQSLIGPNELLYFADMCAGPGGFSEYVLYRKSWEAR 439

Query: 93  ANNTRVVAIDILDMEPILGV------KFFK----FDFLDLDSW----EFIRQAIGGNPDL 138
                +   +   +E            F+      D  +  +     ++IR+        
Sbjct: 440 GFGFTLRGSNDFKLEKFFAASPESFDTFYGVKDDGDIFNTSNQNSLNDYIRKHTPQGVHF 499

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G   I  + +  L       AL++L +GG F+ K F      +  ++ L+
Sbjct: 500 AMADGGFSVEGQENIQEILSKQLYLCQFNTALKILRVGGSFVCKLFDLFTPFSVSLVYLM 559

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ++  +KP +SR  + E +++ K ++
Sbjct: 560 YKCFQQIAILKPNSSRPANSERYIICK-YK 588


>gi|70929691|ref|XP_736867.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511773|emb|CAH84861.1| hypothetical protein PC301269.00.0 [Plasmodium chabaudi chabaudi]
          Length = 231

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  ++      +L +GG+F+ K F+G  T  ++  L K F+K+   KP +SR +S+E F
Sbjct: 1   QLILSSLKVCCSVLKVGGNFISKIFRGEYTGLLIFHLNKFFEKIYVCKPQSSRNKSLESF 60

Query: 220 LLAKGF 225
           L+   F
Sbjct: 61  LVCLNF 66


>gi|195397365|ref|XP_002057299.1| GJ16429 [Drosophila virilis]
 gi|194147066|gb|EDW62785.1| GJ16429 [Drosophila virilis]
          Length = 794

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 34/210 (16%)

Query: 50  RSAYKLLQINE--KHQILQSNRR-------------IVDLGSSPGSWSQVA--ARITGSN 92
           R+A K+  I+    +   Q                   D+ + PG +S+     +   + 
Sbjct: 177 RAAVKMANIDSMCDYMFTQPRDSHGNSLIGTNELLYFADMCAGPGGFSEYVLYRKSWKAK 236

Query: 93  ANNTRVVAIDILDMEPILGVKFFKFD----------FLDLDSWE----FIRQAIGGNPDL 138
                +   +   ++         FD            D  + +    +IR+        
Sbjct: 237 GFGFTLRGTNDFKLDKFFAASPESFDAYYGIKEDGNIFDQSNQDSLNDYIRKHTPQGVHF 296

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
            ++D  +   G   I  + +  L       AL++L I G F+ K F      +  ++ L+
Sbjct: 297 AMADGGFSVEGQENIQEILSKQLYLCQFVTALKILRINGSFVCKLFDLFTPFSVSLVYLM 356

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            K FQ++  +KP +SR  + E +++ K ++
Sbjct: 357 YKCFQQIAIIKPNSSRPANSERYIVCK-YK 385


>gi|213019910|ref|ZP_03335699.1| ribosomal RNA large subunit methyltransferase J, putative
          [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|212994501|gb|EEB55160.1| ribosomal RNA large subunit methyltransferase J, putative
          [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 61

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 44/54 (81%)

Query: 34 INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
          +ND YVQ+   +G+R+RSAYKL++I++K ++LQ  ++I+DLG+ PG WSQVA +
Sbjct: 1  MNDQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVAPQ 54


>gi|260830142|ref|XP_002610020.1| hypothetical protein BRAFLDRAFT_237949 [Branchiostoma floridae]
 gi|229295383|gb|EEN66030.1| hypothetical protein BRAFLDRAFT_237949 [Branchiostoma floridae]
          Length = 584

 Score = 84.6 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV--KFFKFDFL-------- 120
           D+ + PG +S+     +   +      +   +   +E       + F+  +         
Sbjct: 201 DICAGPGGFSEYVLWRKKWHAKGFGLTIRGPNDFKLEEFFAASSEMFEPHYGEGGIDGDG 260

Query: 121 ------DLDSWEF--IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
                 +L +++   +    G     V++D  +   G   +  + +  L       AL +
Sbjct: 261 DIMKPANLTTFKKFVLDSTEGKGVHFVMADGGFSVEGQENLQEVLSKQLVLCEFLCALSI 320

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L IGG F+ KTF      +  ++ LL   F +V   KP+ SR  + E +++ KG +
Sbjct: 321 LRIGGCFVCKTFDLFTPFSVGLVYLLYHCFHQVCIFKPITSRPANSERYVVCKGLK 376


>gi|261332886|emb|CBH15881.1| methyltransferase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 370

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 29/207 (14%)

Query: 47  WRARSAYKLLQINEKHQI---LQSNRR-------IVDLGSSPGSWSQVAARITGSNANNT 96
           +R R+ +KL +  E   +   L+            VD+   PG++SQ    +   +    
Sbjct: 88  FRNRAGHKLHETMEAVGLWEYLKGGATRAKGTFTFVDVCGGPGAFSQALFAMGKEHKLRL 147

Query: 97  RVVAIDILDME--------------PILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLS 141
           R   + + +++              P  G+     +   L++ E +       N  LV++
Sbjct: 148 RGFGLTLRNVKGLDWYTDLPSRSFFPCYGIDG-TGNVFKLENIESLCSLTCKENVRLVVA 206

Query: 142 DMAYPT-IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKK 198
           D  +             +  +       A+++L  GG F++K F      T  IL L   
Sbjct: 207 DGGFDVPTEVVNFQETISCRIVYGQWLSAVKLLRPGGCFVLKLFDCFSPFTRAILFLTTH 266

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ V  VKP  SR  + E +L+  GF
Sbjct: 267 LYESVQVVKPRHSRVVNSERYLVCIGF 293


>gi|322800047|gb|EFZ21153.1| hypothetical protein SINV_03614 [Solenopsis invicta]
          Length = 830

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 50  RSAYKLLQINEKHQIL---QSNRRI------VDLGSSPGSWSQVA-------ARITGSNA 93
           R+A K+  I+     +     N          D+ + PG +S+         A+  G   
Sbjct: 224 RAAVKMANIDRACDFMFTDPKNMDANELLFFADVCAGPGGFSEYVLSRKKWHAKGFGFTL 283

Query: 94  NNTRVVAIDILDMEPILGVKFFKF-----DFLDLDSWEFIRQAIGGN-----PDLVLSDM 143
            ++    +D     P      F       D  +  + E  +  I  +        ++SD 
Sbjct: 284 KSSNDFTLDEFFAGPCETFHPFYGPKGDGDVYNPQNQEAFQALIKKHTDNKGVHFMMSDG 343

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQ 201
            +   G   I  + +  L       AL ++   G F+ K F      +  ++ L+ K F 
Sbjct: 344 GFSVEGQENIQEILSKQLYLCQCLVALMIVRPDGHFVTKLFDLFTPFSVGLIYLMYKCFD 403

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
            +   KP +SR  + E +L+ K  R
Sbjct: 404 SISIFKPNSSRPANSERYLICKRKR 428


>gi|322510557|gb|ADX05871.1| putative FtsJ methyltransferase [Organic Lake phycodnavirus 1]
          Length = 377

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 20/198 (10%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAA--RITGSNANNTRVVAIDILD 105
           +RS +K+++I   +     +      L   PG + +  +  R    +      +  +  D
Sbjct: 82  SRSYFKMVEILHHYSFHFPNEMVSFHLAEGPGGFIEALSNYRKNEKDIYFGMTLMDNKED 141

Query: 106 MEPILGVKFF---------------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
           +        +                 +     + ++I      + D V  D        
Sbjct: 142 VPKWKNNDIYLNLHKNIILEYGQDKTGNLYSKKNLQYIYSNYKHSVDFVTGDGGIDYSND 201

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKP 208
                  +++L  A   +A+ +   GG F++K F      + ++L LL   ++ +  +KP
Sbjct: 202 FNKQEESSLNLIFAQILYAMCIQKKGGSFVLKLFDTFTSLSVELLFLLNYLYEDIYIIKP 261

Query: 209 VASRAESVEMFLLAKGFR 226
           + SR  + E +++   FR
Sbjct: 262 LTSRPANSEKYIVCIHFR 279


>gi|322511153|gb|ADX06466.1| hypothetical protein 162276034 [Organic Lake phycodnavirus 2]
          Length = 376

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 22/199 (11%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA-----ID 102
           +RS +K+++I   +        R   L   PG + +  +    +  +    +       D
Sbjct: 82  SRSYFKMIEILNHYSFSFPDTMRSFHLAEGPGGFIEALSNYRNNPKDVYYGMTLMEEKND 141

Query: 103 I---------LDMEPILGVKFFKFDFL----DLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
           I         LD+   + ++ +  D         + E++      + D V  D  +    
Sbjct: 142 IPKWKKNEIYLDIHKHISLE-YGGDNTGNLYHKTNLEYVYNKYKHSIDFVTGDGGFDYSI 200

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVK 207
                   +++L  +   FA+ +   GG F++K F      + +++ LL   ++++  +K
Sbjct: 201 DFNKQEEHSLNLIFSQICFAMCVQKKGGSFVLKLFDTFTSLSVEMIYLLNYLYEEIYIIK 260

Query: 208 PVASRAESVEMFLLAKGFR 226
           P+ SR  + E +++   FR
Sbjct: 261 PLTSRPANSEKYIICIRFR 279


>gi|332020260|gb|EGI60695.1| FtsJ methyltransferase domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 703

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 75/206 (36%), Gaps = 31/206 (15%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPG-------------------SWSQVAARITGS 91
           S + L+ +NE +++   N + V L  +PG                   +W          
Sbjct: 128 SNFSLVPLNEIYEVDGKNFKSVHLCEAPGAFVTALNHWLKTNASDVQWNWLATTLNPYCE 187

Query: 92  NANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFIRQAI-----GGNPDLVLSD 142
             +   ++A D      +     G      D ++L + + + +        G   LV +D
Sbjct: 188 GNSYDNMIADDRFIRHTLKHWCFGADN-TGDIMNLKNLDTLMKKSESLDSKGRILLVTAD 246

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKKHF 200
            +   +            L    T   L +L  GG+FL+K F         ++ LL   F
Sbjct: 247 GSIDCMNMPGEQETVVAQLHLCETVACLHLLQKGGNFLLKLFTLFEHQSVCLMYLLSCTF 306

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
           Q+V   KP +S+  + EM+++   F+
Sbjct: 307 QQVNVTKPASSKGGNSEMYVVCMNFK 332


>gi|321463616|gb|EFX74631.1| hypothetical protein DAPPUDRAFT_307206 [Daphnia pulex]
          Length = 742

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 75/210 (35%), Gaps = 36/210 (17%)

Query: 50  RSAYKLLQINEKHQIL------QSNRRIV---------DLGSSPGSWSQVA--ARITGSN 92
           R+A K+  ++     +      +    ++         D+ + PG +S+     +   + 
Sbjct: 138 RAAMKMANMDAVFDFMFTDPRNEDGTPVLGPNELLYFADVCAGPGGFSEYILWRKKWEAK 197

Query: 93  ANNTRVVAIDILD-----------MEPILGVKFF--KFDFLDLDS----WEFIRQAIGGN 135
                + + +               EP  GV       D  + ++      F+    G  
Sbjct: 198 GFGFTLKSSNDFKLEDFHAAPCECFEPHYGVGGVEGNGDVYNPENIREFQRFVMAQTGEG 257

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDIL 193
              +++D  +   G   +  + +  L       AL ++  GG F+ K F      +  ++
Sbjct: 258 VHFMMADGGFSVEGQENLQEILSKRLYLCQFLVALSIVRTGGHFVCKLFDLFTPFSAGLV 317

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            L+ + F+++   KP  SR  + E +++ K
Sbjct: 318 YLMYRSFKQISIHKPNTSRPANSERYIICK 347


>gi|159151710|gb|ABW92363.1| CG6379-PA [Drosophila melanogaster]
 gi|159151712|gb|ABW92364.1| CG6379-PA [Drosophila melanogaster]
 gi|159151714|gb|ABW92365.1| CG6379-PA [Drosophila melanogaster]
 gi|159151716|gb|ABW92366.1| CG6379-PA [Drosophila melanogaster]
 gi|159151718|gb|ABW92367.1| CG6379-PA [Drosophila melanogaster]
 gi|159151720|gb|ABW92368.1| CG6379-PA [Drosophila melanogaster]
 gi|159151722|gb|ABW92369.1| CG6379-PA [Drosophila melanogaster]
 gi|159151724|gb|ABW92370.1| CG6379-PA [Drosophila melanogaster]
 gi|159151726|gb|ABW92371.1| CG6379-PA [Drosophila melanogaster]
 gi|159151728|gb|ABW92372.1| CG6379-PA [Drosophila melanogaster]
 gi|159151730|gb|ABW92373.1| CG6379-PA [Drosophila melanogaster]
 gi|159151732|gb|ABW92374.1| CG6379-PA [Drosophila melanogaster]
          Length = 236

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E+IR          ++D  +   G + I  + +  L       AL++L   G F+ K F 
Sbjct: 4   EYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLTALKILRPNGSFVCKVFD 63

Query: 186 --GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
                +  ++ L+ K FQ++  +KP +SR  + E +L+ K +++
Sbjct: 64  LFTPFSVGLVYLMYKCFQQIAIIKPNSSRPANSERYLVCK-YKR 106


>gi|270003399|gb|EEZ99846.1| hypothetical protein TcasGA2_TC002628 [Tribolium castaneum]
          Length = 747

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----PILGV 112
           IN  H          D+ + PG +++              +      D +         V
Sbjct: 246 INHSHHEDSGPYYFADVCAGPGGFTEYILWRKKWMFKGFGLTLRGDNDFKLTESLCASPV 305

Query: 113 KFFK-----FDF-------LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
            F        D        +   S + + +        +++D  +   G+  I  + + S
Sbjct: 306 TFLPLYGASGDGNACSPENISDFSEKVLFETENKGVHFMMADGGFSVEGNENIQEILSKS 365

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           L       ALE+L   G F+ K F   T  +  +L L+   F+KV  +KP +SR  + E 
Sbjct: 366 LYICQCLIALEILRKHGHFVTKVFDIFTCFSVGLLYLIYHCFEKVCILKPNSSRPANSER 425

Query: 219 FLLAKGFR 226
           +++   ++
Sbjct: 426 YVICCNYK 433


>gi|189235701|ref|XP_967499.2| PREDICTED: similar to CG6379 CG6379-PA [Tribolium castaneum]
          Length = 573

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----PILGV 112
           IN  H          D+ + PG +++              +      D +         V
Sbjct: 263 INHSHHEDSGPYYFADVCAGPGGFTEYILWRKKWMFKGFGLTLRGDNDFKLTESLCASPV 322

Query: 113 KFFK-----FDF-------LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
            F        D        +   S + + +        +++D  +   G+  I  + + S
Sbjct: 323 TFLPLYGASGDGNACSPENISDFSEKVLFETENKGVHFMMADGGFSVEGNENIQEILSKS 382

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEM 218
           L       ALE+L   G F+ K F   T  +  +L L+   F+KV  +KP +SR  + E 
Sbjct: 383 LYICQCLIALEILRKHGHFVTKVFDIFTCFSVGLLYLIYHCFEKVCILKPNSSRPANSER 442

Query: 219 FLLAKGFR 226
           +++   ++
Sbjct: 443 YVICCNYK 450


>gi|70952953|ref|XP_745609.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525987|emb|CAH74337.1| hypothetical protein PC000044.00.0 [Plasmodium chabaudi chabaudi]
          Length = 165

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 22/100 (22%)

Query: 30  LNRHINDPYVQRAQLEGWRARSAYKLLQINEK---HQILQSNR----------------- 69
           L++   D Y ++A+  G+RARS+YKL+QIN+K    ++   +                  
Sbjct: 4   LSKDRRDIYYRKAKENGYRARSSYKLIQINDKFEIFKLFNPSNYNNNDIGVVVNKYNDEF 63

Query: 70  --RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
              IVDL ++PGSWSQV   I   N  N         +M 
Sbjct: 64  CYNIVDLCAAPGSWSQVLKNICLYNYYNMLYFINKNNNMN 103


>gi|50510351|dbj|BAD32161.1| mKIAA0082 protein [Mus musculus]
          Length = 690

 Score = 82.3 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 160 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 219

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 220 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 279

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 280 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 335


>gi|71666780|ref|XP_820346.1| methyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|122045901|sp|Q4E123|MTR1_TRYCR RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|70885686|gb|EAN98495.1| methyltransferase, putative [Trypanosoma cruzi]
          Length = 362

 Score = 82.3 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 29/207 (14%)

Query: 47  WRARSAYKLLQINEKHQILQSNRR----------IVDLGSSPGSWSQVAARITGSNANNT 96
           +  R+ +KL ++ E   + +  +R            D+   PG++SQ    ++       
Sbjct: 88  FGNRAGHKLREVMEATGVWEHLQRETSGQKGAVVFADVCGGPGAFSQALFEMSRQYKLRM 147

Query: 97  RVVAIDILDME--------------PILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLS 141
           R   + + ++               P  G+     D  +L + E +    I     LV++
Sbjct: 148 RGFGMTLRNVRGLDWYSSLPLGKFLPTYGIDG-TGDIFNLANIEALLSLTIRERLKLVVA 206

Query: 142 DMAYPT-IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKK 198
           D  +             +  +       AL++L  GG F++K F      +  +L L   
Sbjct: 207 DGGFNVPFNIANYQETLSGRILFGQWLAALKLLRPGGCFILKLFDTFSPLSRALLYLSTY 266

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            + +V  VKP  SR  + E +L+  GF
Sbjct: 267 LYDRVHVVKPRHSRVVNSERYLVCLGF 293


>gi|45478098|gb|AAS66220.1| LRRG00129 [Rattus norvegicus]
          Length = 1035

 Score = 82.3 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     R   +      +   +   +E                       
Sbjct: 387 DVCAGPGGFSEYVLWRRKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 446

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 447 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 506

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ KG +
Sbjct: 507 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPVTSRPANSERYVVCKGLK 562


>gi|159151708|gb|ABW92362.1| CG6379-PA [Drosophila simulans]
          Length = 236

 Score = 82.3 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E+IR          ++D  +   G + I  + +  L       AL++L   G F+ K F 
Sbjct: 4   EYIRMHTPQGVHFAMADGGFSVEGQKNIQEILSKQLYLCQFLTALKILRPNGSFVCKLFD 63

Query: 186 --GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
                +  ++ L+ + FQ++  +KP +SR  + E +L+ K +++
Sbjct: 64  LFTPFSVGLVYLMYQCFQQIAIIKPNSSRPANSERYLVCK-YKR 106


>gi|62078793|ref|NP_001014053.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Rattus
           norvegicus]
 gi|81883532|sp|Q5U2Z5|MTR1_RAT RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|55249721|gb|AAH85799.1| FtsJ methyltransferase domain containing 2 [Rattus norvegicus]
 gi|149043523|gb|EDL96974.1| similar to RIKEN cDNA 1300018I05, isoform CRA_a [Rattus norvegicus]
 gi|149043524|gb|EDL96975.1| similar to RIKEN cDNA 1300018I05, isoform CRA_a [Rattus norvegicus]
          Length = 837

 Score = 82.3 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     R   +      +   +   +E                       
Sbjct: 274 DVCAGPGGFSEYVLWRRKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 333

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 334 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 393

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ KG +
Sbjct: 394 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPVTSRPANSERYVVCKGLK 449


>gi|308499046|ref|XP_003111709.1| hypothetical protein CRE_02812 [Caenorhabditis remanei]
 gi|308239618|gb|EFO83570.1| hypothetical protein CRE_02812 [Caenorhabditis remanei]
          Length = 663

 Score = 81.9 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D   L     I+  + G+ DLV +D +  T G          SL  A    AL +L   
Sbjct: 198 GDVKKLTEDYLIKNELAGSFDLVTADGSTDTQGQEGQIEEVVASLIRAEVEAALILLRKN 257

Query: 177 GDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  ++K ++     T D++ LL  +F  +   KP ASR  S E +++ +GF
Sbjct: 258 GRLILKVYRFCALDTQDVMMLLADNFGSIRVFKPKASRPGSSEKYVICEGF 308


>gi|291510282|gb|ADE10097.1| NADB Rossmann [Tremella fuciformis]
          Length = 96

 Score = 81.9 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI------GGDFLVKTFQGGTTNDILC-L 195
           M  P  G R  D   ++ L  AAT FA+++L        GG+ ++K F     +      
Sbjct: 1   MMAPMSGVRMRDVQASLDLVGAATGFAMDVLASSADGADGGNLVLKFFAHPDLDAFRRTQ 60

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L+ HF KV   KP  SR ES E + +  G+R
Sbjct: 61  LEPHFHKVHVDKPKESRKESSEAYWVCLGYR 91


>gi|25144487|ref|NP_498461.2| hypothetical protein Y40D12A.1 [Caenorhabditis elegans]
 gi|20198897|gb|AAC26945.2| Hypothetical protein Y40D12A.1a [Caenorhabditis elegans]
          Length = 635

 Score = 81.9 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D         I+Q + G  DLV +D +  T G          SL  A    AL++L   
Sbjct: 196 GDIEKFTEEYLIKQKLAGTFDLVTADGSTNTQGKEGEIESIVSSLISAEVEVALKLLRRN 255

Query: 177 GDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  ++KT++    +T D++ LL  +F  +  +KP+ASR  S E +++  GF
Sbjct: 256 GRLILKTYRFCAKSTRDVMNLLADNFSSIKAIKPMASRPGSSERYIVCDGF 306


>gi|322820997|gb|EFZ27452.1| methyltransferase, putative [Trypanosoma cruzi]
          Length = 362

 Score = 81.5 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 29/207 (14%)

Query: 47  WRARSAYKLLQINEKHQILQSNRR----------IVDLGSSPGSWSQVAARITGSNANNT 96
           +  R+ +KL ++ E   + +  +R            D+   PG++SQ    ++       
Sbjct: 88  FGNRAGHKLREVMEAAGVWEHLQRETRGQKGAVVFADVCGGPGAFSQALFEMSRQYKLRM 147

Query: 97  RVVAIDILDME--------------PILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLS 141
           R   + + ++               P  G+     D  +L + E +    I     LV++
Sbjct: 148 RGFGMTLRNVMGLDWYSSLPLGKFLPTYGIDG-TGDIFNLANIEALLSLTIRERLKLVVA 206

Query: 142 DMAYPT-IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKK 198
           D  +             +  +       AL++L  GG F++K F      +  +L L   
Sbjct: 207 DGGFNVPFNIANYQETLSGRILFGQWLAALKLLRPGGCFILKLFDTFSPLSRVLLYLSTY 266

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            + +V  VKP  SR  + E +L+  GF
Sbjct: 267 LYDRVHVVKPRHSRVVNSERYLVCLGF 293


>gi|26339874|dbj|BAC33600.1| unnamed protein product [Mus musculus]
          Length = 837

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 274 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 333

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 334 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 393

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 394 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|74191719|dbj|BAE32821.1| unnamed protein product [Mus musculus]
          Length = 837

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 274 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 333

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 334 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 393

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 394 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|21311939|ref|NP_083067.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Mus
           musculus]
 gi|81906080|sp|Q9DBC3|MTR1_MOUSE RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|12836695|dbj|BAB23771.1| unnamed protein product [Mus musculus]
 gi|19354353|gb|AAH24691.1| RIKEN cDNA 1300018I05 gene [Mus musculus]
 gi|26334891|dbj|BAC31146.1| unnamed protein product [Mus musculus]
 gi|26335867|dbj|BAC31634.1| unnamed protein product [Mus musculus]
 gi|26348519|dbj|BAC37899.1| unnamed protein product [Mus musculus]
 gi|74139681|dbj|BAE31692.1| unnamed protein product [Mus musculus]
 gi|74185441|dbj|BAE30191.1| unnamed protein product [Mus musculus]
 gi|74219494|dbj|BAE29520.1| unnamed protein product [Mus musculus]
 gi|74220584|dbj|BAE31504.1| unnamed protein product [Mus musculus]
 gi|74225491|dbj|BAE31655.1| unnamed protein product [Mus musculus]
 gi|148690680|gb|EDL22627.1| RIKEN cDNA 1300018I05, isoform CRA_a [Mus musculus]
 gi|148690681|gb|EDL22628.1| RIKEN cDNA 1300018I05, isoform CRA_a [Mus musculus]
          Length = 837

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 274 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 333

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 334 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 393

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 394 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|156543832|ref|XP_001606646.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 855

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 50  RSAYKLLQINEK--HQILQSNR-------RIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           R+A K+  I++       Q +           D+ + PG +S+         A       
Sbjct: 255 RAAVKMANIDKACNFMFTQPDNLQSDDLLYFADVCAGPGGFSEYVLWRKKWRAKGFGFTL 314

Query: 101 IDILDME-------PILGVKFFKF-----DFLDLDSW----EFIRQAIGGN-PDLVLSDM 143
            +  D +       P      +       +  D  +     E I +  G      +++D 
Sbjct: 315 KNENDFKLHDFHAGPCETFHPYYGPKEDGNVYDPKNQVALKELIMKQTGDQGVHFMMADG 374

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQ 201
            +   G   I  + +  L       AL ++  GG F+ K F      +  ++ ++ + F 
Sbjct: 375 GFSVEGQENIQEILSKQLYLCQCLVALMIVRTGGHFVTKLFDLFTPFSGGLVYIMYRCFD 434

Query: 202 KVIHVKPVASRAESVEMFLLAKGFR 226
           +V   KP  SR  + E +L+ KG R
Sbjct: 435 QVSIFKPNTSRPANSERYLICKGKR 459


>gi|307187912|gb|EFN72825.1| NADPH:adrenodoxin oxidoreductase, mitochondrial [Camponotus
           floridanus]
          Length = 1106

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 34/208 (16%)

Query: 51  SAYKLLQINEKHQILQSNRRI--VDLGSSPG-------------------SWSQVAARIT 89
           S + L+ +NE H+  ++ +    V L  +PG                   +W        
Sbjct: 132 SNFFLVPLNEIHRE-ENGKNFTSVHLCEAPGAFVAALNHWLKTNAPNVQWNWLATTLNPY 190

Query: 90  GSNANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFIRQAIG-----GNPDLVL 140
               +  R+VA D      +     G      D +DL + +   +            LV 
Sbjct: 191 CEGNSYDRMVADDRFIRHTLKHWCFGADN-TGDIMDLRNLDIFIERCKLLNEKERILLVT 249

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKK 198
           +D +                L    T   + +L  GG+FL+K F         ++ LL  
Sbjct: 250 ADGSVDCTDVPGEQESAVAQLHLCETVACMHLLEKGGNFLLKLFTLFEHQSVCLMYLLSC 309

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F +V   KP +S+A + EM+++   F+
Sbjct: 310 VFHQVTVTKPASSKAGNSEMYVVCVNFK 337


>gi|158296375|ref|XP_316791.4| AGAP000826-PA [Anopheles gambiae str. PEST]
 gi|157015266|gb|EAA12036.5| AGAP000826-PA [Anopheles gambiae str. PEST]
          Length = 782

 Score = 81.1 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 35/208 (16%)

Query: 50  RSAYKLLQINEKHQIL--QSNRR-------------IVDLGSSPGSWSQVA--ARITGSN 92
           R+A K+  ++     +      R               D+ + PG +S+     +   + 
Sbjct: 154 RAAVKMANMDSMFGFMLTSPVDRHGQPLVRDHDLFYFADVCAGPGGFSEYVLWRKRWYAK 213

Query: 93  ANNTRV-----------VAIDILDMEPILGVKFFKFDFLDLDSW----EFIRQAIGGNPD 137
                +            A      +P  G K    +  D  +     E++         
Sbjct: 214 GFGFTLKGAYDFRLDDFSAGSPETFDPHYGPK-EDGNVFDPANIVGFTEYVMTQTETGVH 272

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCL 195
           L+++D  +   G      + +  L       AL ++   G F++K F      +  ++ L
Sbjct: 273 LMMADGGFSVEGQENEQEILSKQLYLCQLIVALAIVRPDGHFVMKVFDLFTPFSVGLVYL 332

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAK 223
             + F+++   KP +SR  + E +L+ K
Sbjct: 333 AYRCFREISICKPNSSRPANSERYLVCK 360


>gi|74214476|dbj|BAE31091.1| unnamed protein product [Mus musculus]
 gi|74214791|dbj|BAE31230.1| unnamed protein product [Mus musculus]
          Length = 837

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 274 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGVDGDG 333

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        V++D  +   G   +  + +  L       AL +
Sbjct: 334 DITRPENINAFRNFVLDNTDRKGVHFVMADGGFSVEGQENLQEIFSKQLLLCQFLMALSV 393

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 394 VRTGGHFVCKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 449


>gi|309358872|emb|CAP33554.2| hypothetical protein CBG_15196 [Caenorhabditis briggsae AF16]
          Length = 555

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D   L     I + + G  DLV +D +  T G           L  A    AL +L  G
Sbjct: 188 GDVAKLTEDYLIEKGLKGTFDLVTADGSTNTQGKEGQIEEIVGPLIRAEVNAALLLLKPG 247

Query: 177 GDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  ++KT++       D++ LL  +F ++  VKP+ASR  S E +L+  GF
Sbjct: 248 GSLILKTYRFCEKQIQDVMFLLADNFSEIRVVKPMASRPGSSERYLICNGF 298


>gi|268575880|ref|XP_002642920.1| Hypothetical protein CBG15196 [Caenorhabditis briggsae]
          Length = 494

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D   L     I + + G  DLV +D +  T G           L  A    AL +L  G
Sbjct: 188 GDVAKLTEDYLIEKGLKGTFDLVTADGSTNTQGKEGQIEEIVGPLIRAEVNAALLLLKPG 247

Query: 177 GDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G  ++KT++       D++ LL  +F ++  VKP+ASR  S E +L+  GF
Sbjct: 248 GSLILKTYRFCEKQIQDVMFLLADNFSEIRVVKPMASRPGSSERYLICNGF 298


>gi|268533156|ref|XP_002631706.1| Hypothetical protein CBG20906 [Caenorhabditis briggsae]
          Length = 842

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPI------LGVKFF----KFDF 119
           D+ + PG +S+          +      +   D   ++            F+      D 
Sbjct: 267 DVCAGPGGFSEYMLWRKAFYNAKGFGFTLAGKDDFKLQKFTASSAYFFETFYGTKKNGDV 326

Query: 120 LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           +D ++ + + + I     G    L+++D  +   G   I  + +  L       +L ++ 
Sbjct: 327 MDPENIDSLEKFISEGTDGQGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCIVR 386

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG+F  K F      +  ++ L++  +  +   KP  SR  + E ++  KG RK
Sbjct: 387 EGGNFFCKLFDIFTPFSVGLIYLMRVCYDSISLHKPHTSRPANSERYITCKGLRK 441


>gi|328780882|ref|XP_394722.4| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
           1-like [Apis mellifera]
          Length = 744

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 30/206 (14%)

Query: 50  RSAYKLLQINEKHQILQSNRR---------IVDLGSSPGSWSQVA-------------AR 87
           R+A K+  I+     + ++R+           D+ + PG +S+                 
Sbjct: 142 RAAVKMANIDRACNFMFTDRKHLGKNELLYFADVCAGPGGFSEYVLWRTKWHAKGFGFTL 201

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI-----GGNPDLVLSD 142
              ++       A       P  G K    D  D ++    R+ I           ++SD
Sbjct: 202 KNENDFKLADFYAGSPETFHPYYGPKD-NGDVFDSENQRTFRELIMKYTHNKGVHFMMSD 260

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHF 200
             +   G   +  + +  L       AL ++   G F+ K F      +  ++ L+ + F
Sbjct: 261 GGFSVEGKENLQEILSKQLYLCQCLVALMIVREKGHFVTKLFDIFTPFSAGLIYLMYRCF 320

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            ++   KP +SR  + E +L+ K  R
Sbjct: 321 DEICIFKPNSSRPANSERYLICKSKR 346


>gi|308197135|sp|A8XYX2|MTR1A_CAEBR RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1A; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1A; Short=MTr1A
 gi|309356152|emb|CAP37839.2| hypothetical protein CBG_20906 [Caenorhabditis briggsae AF16]
          Length = 874

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPI------LGVKFF----KFDF 119
           D+ + PG +S+          +      +   D   ++            F+      D 
Sbjct: 267 DVCAGPGGFSEYMLWRKAFYNAKGFGFTLAGKDDFKLQKFTASSAYFFETFYGTKKNGDV 326

Query: 120 LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           +D ++ + + + I     G    L+++D  +   G   I  + +  L       +L ++ 
Sbjct: 327 MDPENIDSLEKFISEGTDGQGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCIVR 386

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG+F  K F      +  ++ L++  +  +   KP  SR  + E ++  KG RK
Sbjct: 387 EGGNFFCKLFDIFTPFSVGLIYLMRVCYDSISLHKPHTSRPANSERYITCKGLRK 441


>gi|328722620|ref|XP_001945474.2| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           [Acyrthosiphon pisum]
          Length = 740

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 36/211 (17%)

Query: 51  SAYKLLQINEKHQILQ-----SNRRI-VDLGSSPGS-------------------WSQVA 85
           +  K  ++   ++++      + +   V L  +PG                    W  V+
Sbjct: 136 AWLKFFELLNDYELIPQKSIDNGKLCSVHLCEAPGGFISALNHYIVSQEINIEWDWVGVS 195

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFF----KFDFLDLDSWEFIRQA----IGGNPD 137
                    N  ++  D   M   L   FF      D    + ++ +        G    
Sbjct: 196 LNPYHEGNGNPDLINDDRF-MLYTLNHWFFGKDHTGDIFQKNFYKELYTFVKNRFGEEAH 254

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCL 195
           +V +D +     +        M L    T  AL +L  GG F+VK F     N +  L L
Sbjct: 255 VVTADGSMDCQNNPDEQENVVMRLQIVETMVALMILQKGGSFVVKMFTMFECNTLCRLYL 314

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F  V   KPV S+  + E++++  G++
Sbjct: 315 LSCAFDSVKIKKPVTSKQGNSEVYVVCCGYK 345


>gi|41055983|ref|NP_956427.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Danio
           rerio]
 gi|82177092|sp|Q803R5|MTR1_DANRE RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|27881850|gb|AAH44371.1| FtsJ methyltransferase domain containing 2 [Danio rerio]
          Length = 829

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV--KFFKFDF--------- 119
           D+ + PG +S+     R   +      +   +   +E       + F+  +         
Sbjct: 267 DVCAGPGGFSEYVLWRRRWHAKGFGMTLKGANDFKLEDFYAAPSELFEAYYGEGGIDGDG 326

Query: 120 --LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
                ++    R  +     G     +++D  +   G   +  + +  L       AL +
Sbjct: 327 DITRPENISAFRNFVLDSTEGRGLHFLMADGGFSVEGQENLQEILSKQLLLCQFLTALSV 386

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG FL KTF      +  ++ LL   F++V   KPV SR  + E +++ KG +
Sbjct: 387 VRPGGHFLCKTFDLFTPFSVGLIYLLYLCFERVSLFKPVTSRPANSERYVVCKGLK 442


>gi|71998392|ref|NP_497098.2| hypothetical protein Y53F4B.13 [Caenorhabditis elegans]
 gi|75023773|sp|Q9NAA5|MTR1_CAEEL RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|34556112|emb|CAB70104.2| C. elegans protein Y53F4B.13, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 927

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 20/175 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPILGVKFF----------KFDF 119
           D+ + PG +S+          +      +   D   +        +            D 
Sbjct: 292 DVCAGPGGFSEYMLWRKGFYNAKGFGFTLAGKDDFKLFKFTASSQYFFETFYGTKDNGDV 351

Query: 120 LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           +D  + + +   I     G    L+++D  +   G   I  + +  L       +L ++ 
Sbjct: 352 MDPVNIDSLEAHISRGTSGLGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCIVR 411

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG+F  K F      +  ++ L++  +Q V   KP  SR  + E ++  KG RK
Sbjct: 412 EGGNFFCKLFDIFTPFSVGLIYLMRVCYQSVSLHKPHTSRPANSERYITCKGLRK 466


>gi|241999224|ref|XP_002434255.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215496014|gb|EEC05655.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 627

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 26/215 (12%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGS----------------- 80
           V++        ++  K  ++  + Q+  ++  R   L  +PG+                 
Sbjct: 85  VRKTAKPALLTQAWCKFYELLHEFQLADADPLRSFHLCEAPGAFVTALQHYLLSETGSKD 144

Query: 81  ---WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGN- 135
              W   +         +   VA D L    +    F +    D+ S EF I + + G  
Sbjct: 145 TWTWYANSLNPYYEGNCSKSTVADDRLMFGTLERWYFGQDQTGDVMSPEFKIEEFLEGKE 204

Query: 136 -PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDI 192
              LV +D +               +L  A    A ++L  GG F++K F      +  +
Sbjct: 205 KFHLVTADGSVDCQDDPAEQESTVAALHGAEIAAAFKLLADGGHFVLKMFTFFESFSVSL 264

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L LL   F+KV   KP  S+  + E++++ +GF+K
Sbjct: 265 LYLLNCLFEKVTVKKPACSKPGNSEVYVVCRGFQK 299


>gi|15150423|gb|AAK84935.1| SD02116p [Drosophila melanogaster]
          Length = 700

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNSMHLCEAPGAFIASLNHYLHSKYEKDEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLS 141
                   ++++ D   +  +      K    + LD+ + + + +       G  DLV +
Sbjct: 174 YYEGNAINQMISDDRFIVHTLDNWFFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG+FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYNK 321


>gi|4375869|emb|CAA22952.1| EG:52C10.7 [Drosophila melanogaster]
          Length = 700

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNSMHLCEAPGAFIASLNHYLHSKYEKDEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLS 141
                   ++++ D   +  +      K    + LD+ + + + +       G  DLV +
Sbjct: 174 YYEGNAINQMISDDRFIVHTLDNWFFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG+FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYNK 321


>gi|17137638|ref|NP_477413.1| adrift [Drosophila melanogaster]
 gi|7302710|gb|AAF57788.1| adrift [Drosophila melanogaster]
          Length = 700

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNSMHLCEAPGAFIASLNHYLHSKYEKDEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLS 141
                   ++++ D   +  +      K    + LD+ + + + +       G  DLV +
Sbjct: 174 YYEGNAINQMISDDRFIVHTLDNWFFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG+FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYNK 321


>gi|74828469|sp|Q9UAS6|FTSJ1_DROME RecName: Full=FtsJ methyltransferase domain-containing protein 1
           homolog; AltName: Full=Protein Adrift
 gi|4530433|gb|AAD22030.1| Adrift [Drosophila melanogaster]
          Length = 700

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNSMHLCEAPGAFIASLNHYLHSKYEKDEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLS 141
                   ++++ D   +  +      K    + LD+ + + + +       G  DLV +
Sbjct: 174 YYEGNAINQMISDDRFIVHTLDNWFFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG+FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYNK 321


>gi|307212767|gb|EFN88438.1| Uncharacterized protein FLJ11171 [Harpegnathos saltator]
          Length = 488

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 33/201 (16%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGS-------------------WSQVAARITGSNAN 94
           K+ +INE+  I       V L  +PG+                   W             
Sbjct: 121 KIQEINEE-NICS--FSSVHLCEAPGAFVVALNHWLKLNAPSVKWDWIASTLNPYCEGNP 177

Query: 95  NTRVVAID----ILDMEPILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAYP 146
            ++++  D       M    G      + +DL + + + +       G   L+ +D +  
Sbjct: 178 YSQMIDDDRFIRHTLMHWYFGADN-TGNIMDLQNLDALVERSKTISQGPIMLITADGSID 236

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKKHFQKVI 204
                       + L        + +L  GG+FL+K F         ++ LL   FQKVI
Sbjct: 237 CTDMPDEQENAVVHLHFCEIVTCMHLLEKGGNFLLKVFTLFEHQSVCLMYLLACAFQKVI 296

Query: 205 HVKPVASRAESVEMFLLAKGF 225
             KP  SRA + EM+++   F
Sbjct: 297 ATKPATSRAGNSEMYIVCTNF 317


>gi|322801951|gb|EFZ22498.1| hypothetical protein SINV_09148 [Solenopsis invicta]
          Length = 1056

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 31/206 (15%)

Query: 51  SAYKLLQINEKH-QILQSNRRIVDLGSSPGS-------------------WSQVAARITG 90
           S + L+ +NE    +     R V L  +PG+                   W         
Sbjct: 101 SNFSLVPLNEIFRGVDGKKFRSVHLCEAPGAFVAALNHWLKTNASDVQWDWLATTLNPYC 160

Query: 91  SNANNTRVVAIDILDMEPI----LGVKFFKFDFLD----LDSWEFIRQAIGGNPDLVLSD 142
              +   +VA D      +     G      D L+     D  E  +   GG   LV +D
Sbjct: 161 EGNSYDSMVADDRFIRHTLEHWCFGADN-TGDILNLRNLDDLVEKSKSLDGGRILLVTAD 219

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKKHF 200
            +                L    T   +++L+ GG+FL+K F         ++ LL   F
Sbjct: 220 GSIDCTNVPGEQESTVAQLHLCETVACMQLLHKGGNFLLKLFTLFEHQSVCLMYLLSCIF 279

Query: 201 QKVIHVKPVASRAESVEMFLLAKGFR 226
            +V   KP +S+  + EM+++   F+
Sbjct: 280 HQVSVTKPASSKGGNSEMYVVCMNFK 305


>gi|195487715|ref|XP_002092019.1| GE11900 [Drosophila yakuba]
 gi|194178120|gb|EDW91731.1| GE11900 [Drosophila yakuba]
          Length = 700

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNSLHLCEAPGAFIASLNHYLHSKYHKDEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFI----RQAIGGNPDLVLS 141
                   +++  D      +      K    + LD+ + + +     +   G  DLV +
Sbjct: 174 YYEGNALNQMITDDRFIFHTLDNWLFHKDLTGNLLDVANIDHLVKRCEEEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGSFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYLK 321


>gi|308503120|ref|XP_003113744.1| hypothetical protein CRE_26334 [Caenorhabditis remanei]
 gi|308263703|gb|EFP07656.1| hypothetical protein CRE_26334 [Caenorhabditis remanei]
          Length = 917

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPILGVKFF----------KFDF 119
           D+ + PG +S+          S      +   D   ++       F            D 
Sbjct: 286 DVCAGPGGFSEYMLWRKAFYNSKGFGFTLAGKDDFKLQKFTASSAFFFETFYGTKENGDV 345

Query: 120 LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           +D ++ + +   I     G    L+++D  +   G   I  + +  L       +L ++ 
Sbjct: 346 MDPENIDSLEDFISRGTDGKGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCIVR 405

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG+F  K F      +  ++ L++  +  +   KP  SR  + E ++  KG R+
Sbjct: 406 EGGNFFCKLFDIFTPFSIGLIYLMRVCYDSISLHKPHTSRPANSERYITCKGLRR 460


>gi|316977931|gb|EFV60968.1| putative ribosomal RNA large subunit methyltransferase J
           [Trichinella spiralis]
          Length = 770

 Score = 79.6 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 49/254 (19%)

Query: 19  NRSCQGSSRDWLNRHIN---DPY--VQRAQLEGWRARSAYKLLQINE--KHQILQS---- 67
            RS   + +DW  R      +P+  ++ A  +    R+A KL  ++     Q+       
Sbjct: 183 GRSELHNIKDWRLRSARSRANPFESIKSAIFQN---RAAIKLANLDALVDFQLTDPKDAD 239

Query: 68  NRRIV-------------DLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------- 107
              IV             D+ S PG +++      G NA+   +   +  D         
Sbjct: 240 GNSIVPNVAEYPELFYFADVCSGPGGFTEYVLWKRGWNAHGFGMTLRNDCDFRLDKFTAS 299

Query: 108 -PILGVKFF------------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            P++   F+            K   L+  S   ++        L ++D  +  +G   + 
Sbjct: 300 SPVMFEAFYGEDGIDGDGDITKGSNLESFSNFVLKNTDQKGVHLFMADGGFSVVGEEILQ 359

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASR 212
            + +  +    +   L +L  GG FL K F   T  T D++CLL   F K+   KP +SR
Sbjct: 360 EVLSKRIYLCQSLCGLLVLRKGGTFLCKFFDTFTPFTVDLICLLWHCFDKLTLHKPHSSR 419

Query: 213 AESVEMFLLAKGFR 226
             + E +++  GFR
Sbjct: 420 PGNSEKYVIGIGFR 433


>gi|326915346|ref|XP_003203980.1| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
           1-like [Meleagris gallopavo]
          Length = 831

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     R   +      +   +   +E                       
Sbjct: 271 DVCAGPGGFSEYVLWRRKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 330

Query: 118 DFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +           +++D  +   G   +  + +  L       AL +
Sbjct: 331 DITRPENITAFRNFVLDNTDHKGVHFLMADGGFSVEGQENLQEILSKQLMLCQFLMALSI 390

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ KG +
Sbjct: 391 VRTGGHFVCKTFDLFTPFSVGLVYLLYCCFERVCIFKPVTSRPANSERYVVCKGLK 446


>gi|242015838|ref|XP_002428554.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212513188|gb|EEB15816.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 703

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 22/175 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRV-----------VAIDILDMEPILGVKFFKFDF 119
           D+ + PG +S+     +   +      +            A      +P  GV+    D 
Sbjct: 178 DVCAGPGGFSEYVFFRKKWRAKGFGFTLRNENDFMLNEFCAGPSETFDPHYGVRG-DGDI 236

Query: 120 LDLD-----SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              +         ++   G     +++D   P   +     L    L       AL ++ 
Sbjct: 237 YVPENIVSFRDHVLQHTDGNGVHFMMADGGVPIEENFNDQELICKKLYLCQCLVALMIVR 296

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG F+VK F      +  ++ L+ + FQ V  +KP  SR  + E +L+ K +++
Sbjct: 297 TGGHFVVKLFDLFTPFSVGLVYLMYRSFQSVTIIKPNTSRPANSERYLVCK-YKR 350


>gi|189014944|gb|ACD69681.1| methyl transferase [Mangifera indica]
          Length = 115

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 27/115 (23%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE------------------------- 171
            ++LSDM     G    D   +  L   A   A+                          
Sbjct: 1   SVILSDMCPSVSGITTKDAALSAELGMRALDLAVGCAASPHPVGDQGERHLNDSNSDPDE 60

Query: 172 --MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
             +L  GG  ++K  +     +   + K  F+K   ++P A+R+ S E++L+ + 
Sbjct: 61  NGVLKPGGHLVIKLLESEDVKEFSQICKPLFRKASWLRPKATRSSSREIYLICQD 115


>gi|195584389|ref|XP_002081989.1| GD11317 [Drosophila simulans]
 gi|194193998|gb|EDX07574.1| GD11317 [Drosophila simulans]
          Length = 701

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNSMHLCEAPGAFIASLNHYLHSKYEKNEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLS 141
                    +++ D      +      K    + LD+ + + + +       G  DLV +
Sbjct: 174 YYEGNALNHMISDDRFIFHTLDNWLFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG+FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYNK 321


>gi|311259633|ref|XP_003128198.1| PREDICTED: hypothetical protein LOC100156357 [Sus scrofa]
          Length = 911

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 18  DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 77

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 78  DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 137

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 138 VRTGGHFICKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 193


>gi|255639342|gb|ACU19968.1| unknown [Glycine max]
          Length = 177

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASR 212
           +D      L          +L  GG  +   F+G  T+ + C LK  F  V   KP +SR
Sbjct: 1   MDEFVQSQLILPGLTIVTHVLKEGGKLI---FRGKDTSLLYCQLKLFFPVVTFAKPKSSR 57

Query: 213 AESVEMFLLAKGF 225
             S+E F + + +
Sbjct: 58  NSSIEAFAVCENY 70


>gi|316964771|gb|EFV49726.1| putative ribosomal RNA large subunit methyltransferase J
           [Trichinella spiralis]
          Length = 417

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 49/254 (19%)

Query: 19  NRSCQGSSRDWLNRHIN---DPY--VQRAQLEGWRARSAYKLLQINE--KHQILQS---- 67
            RS   + +DW  R      +P+  ++ A  +    R+A KL  ++     Q+       
Sbjct: 138 GRSELHNIKDWRLRSARSRANPFESIKSAIFQN---RAAIKLANLDALVDFQLTDPKDAD 194

Query: 68  NRRIV-------------DLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------- 107
              IV             D+ S PG +++      G NA+   +   +  D         
Sbjct: 195 GNSIVPNVAEYPELFYFADVCSGPGGFTEYVLWKRGWNAHGFGMTLRNDCDFRLDKFTAS 254

Query: 108 -PILGVKFF------------KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
            P++   F+            K   L+  S   ++        L ++D  +  +G   + 
Sbjct: 255 SPVMFEAFYGEDGIDGDGDITKGSNLESFSNFVLKNTDQKGVHLFMADGGFSVVGEEILQ 314

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASR 212
            + +  +    +   L +L  GG FL K F   T  T D++CLL   F K+   KP +SR
Sbjct: 315 EVLSKRIYLCQSLCGLLVLRKGGTFLCKFFDTFTPFTVDLICLLWHCFDKLTLHKPHSSR 374

Query: 213 AESVEMFLLAKGFR 226
             + E +++  GFR
Sbjct: 375 PGNSEKYVIGIGFR 388


>gi|195335398|ref|XP_002034352.1| GM21824 [Drosophila sechellia]
 gi|194126322|gb|EDW48365.1| GM21824 [Drosophila sechellia]
          Length = 701

 Score = 78.4 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVHSMHLCEAPGAFIASLNHYLHSKYEKNEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQ----AIGGNPDLVLS 141
                   ++++ D      +      K    + LD+ + + + +       G  DLV +
Sbjct: 174 YYEGNALNQMISDDRFIFHTLDNWLFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG+FLVK F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYNK 321


>gi|328715384|ref|XP_003245616.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 1 [Acyrthosiphon pisum]
 gi|328715386|ref|XP_003245617.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 704

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFI-----RQAI 132
           W  +       +  +  +V  D L +  +   +F   +  D       E +      +  
Sbjct: 156 WLAMTLNPYHESNGHPDIVTDDRLMLHTLPNWEFGPDYTGDIFQPGYAEHLYRTVVERFS 215

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           G    LV +D +                L +  T  AL +L   G  ++K F     N I
Sbjct: 216 GKGAWLVTADGSIDCSDDPGEQETVVSRLHDHETMVALSVLRDNGSLVLKAFTMFECNSI 275

Query: 193 --LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + LL   F+ V+  KP  S+  + E++++ KG+R
Sbjct: 276 CRMFLLCCLFRSVVLKKPATSKPGNSEVYVVCKGYR 311


>gi|118088049|ref|XP_419486.2| PREDICTED: similar to KIAA0082 [Gallus gallus]
          Length = 897

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 380 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 439

Query: 118 DFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +           +++D  +   G   +  + +  L       AL +
Sbjct: 440 DITRPENITAFRNFVLDNTDHKGVHFLMADGGFSVEGQENLQEILSKQLMLCQFLMALSI 499

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ KG +
Sbjct: 500 VRTGGHFVCKTFDLFTPFSVGLVYLLYCCFERVCIFKPVTSRPANSERYVVCKGLK 555


>gi|157114675|ref|XP_001652367.1| hypothetical protein AaeL_AAEL006950 [Aedes aegypti]
 gi|108877186|gb|EAT41411.1| conserved hypothetical protein [Aedes aegypti]
          Length = 857

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 35/208 (16%)

Query: 50  RSAYKLLQINEKHQ-------------ILQSNRRI--VDLGSSPGSWS-------QVAAR 87
           R+A K+  ++                 +++ N  +   D+ + PG +S       +  A+
Sbjct: 236 RAAVKMANMDAMFDYMFTNPVDEDGNSLVRDNDLVYFADVCAGPGGFSEYFLWRKKWQAK 295

Query: 88  ITG------SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF----IRQAIGGNPD 137
             G      ++   +  +A      +P  G      D  +  + E     + +       
Sbjct: 296 GFGFTLRGENDFKLSDFIAGTPESFDPYYGPNN-DGDVFNPVNIERFTDYVMKQTELGVH 354

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCL 195
           ++++D  +       I  + +  L       AL ++  GG F+VK F      +  ++ L
Sbjct: 355 VMMADGGFSVENQENIQEILSKRLYLCQILMALNVVRTGGHFVVKLFDLFTPFSVGLIYL 414

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAK 223
           + K F+K+   KP  SR  + E +L+ K
Sbjct: 415 VYKCFKKICICKPNTSRPANSERYLVCK 442


>gi|169600119|ref|XP_001793482.1| hypothetical protein SNOG_02889 [Phaeosphaeria nodorum SN15]
 gi|160705379|gb|EAT89620.2| hypothetical protein SNOG_02889 [Phaeosphaeria nodorum SN15]
          Length = 200

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 33/69 (47%)

Query: 144 AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
              T G+   DH  +M LC AA  F+ + L  GG FL K +QG         LK+ F  V
Sbjct: 107 MMNTSGNAFRDHAGSMDLCMAALTFSYDTLKTGGHFLCKFYQGTEEKAFETKLKRLFASV 166

Query: 204 IHVKPVASR 212
              KP +SR
Sbjct: 167 HREKPDSSR 175


>gi|224047575|ref|XP_002187143.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 828

 Score = 78.0 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV--------------KFFK 116
           D+ + PG +S+     R   +      +   +   +E                       
Sbjct: 268 DVCAGPGGFSEYVLWRRKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 327

Query: 117 FDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
                 +   F    +          +++D  +   G   +  + +  L       AL +
Sbjct: 328 DITRSENITAFQNFVLDNTDHKGVHFLMADGGFSVEGQENLQEILSKQLMLCQFLTALSI 387

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG+F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ KG +
Sbjct: 388 VRTGGNFVCKTFDLFTPFSVGLVYLLYCCFERVCIFKPVTSRPANSERYVVCKGLK 443


>gi|268533158|ref|XP_002631707.1| Hypothetical protein CBG20907 [Caenorhabditis briggsae]
          Length = 816

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPI------LGVKFF----KFDF 119
           D+ + PG +S+          +      +   D   ++            F+      D 
Sbjct: 229 DVCAGPGGFSEYMLWRKAFYNAKGFGFTLAGKDDFKLQKFTASSAYFFETFYGTKKNGDV 288

Query: 120 LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           +D ++ + + + I     G    L+++D A+   G   I  + +  L       +L ++ 
Sbjct: 289 MDPENIDSLEKLISEGTDGQGVHLMMADGAFSVQGQENIQEILSKRLYLCQLLVSLCIVR 348

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG+FL   F      +  ++ L++  +  +   KP  SR  + E F++ KG R
Sbjct: 349 EGGNFLCNLFDIFTPFSVGLIYLMRVCYDSISLHKPHTSRPANSERFVVCKGLR 402


>gi|91092006|ref|XP_970361.1| PREDICTED: similar to adrift CG5032-PA [Tribolium castaneum]
          Length = 540

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNPD 137
           W            +   ++  D L         F   F  +     +   + + I     
Sbjct: 146 WGANTLNPDHEGNSPQEMIPDDRLLRHTYKNWYFGSDFTGNVTKYCNHVDLVEKIHEKVW 205

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCL 195
           LV +D +                L    T  AL +L  GG F++K F     +   +L L
Sbjct: 206 LVTADGSIDCSSDPGNQESHVEFLHYCETLTALALLKPGGSFVLKIFTMFEHSTICLLYL 265

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F KV   KP +S++ + E++++ + F+
Sbjct: 266 LNVCFGKVSLFKPGSSKSGNSEVYVICQHFK 296


>gi|194880879|ref|XP_001974580.1| GG21823 [Drosophila erecta]
 gi|190657767|gb|EDV54980.1| GG21823 [Drosophila erecta]
          Length = 700

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  KL +   ++ ++ +     + L  +PG                      W       
Sbjct: 114 AWCKLFECLHRYPLVTKPAVNTLHLCEAPGAFIASLNHYLHSKYHKDEIKWRWRSTTLNP 173

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSW----EFIRQAIGGNPDLVLS 141
                   ++++ D      +      K    + LD+ +     E       G  DLV +
Sbjct: 174 YYEGNALNQMISDDRFIFHTLDNWLFHKDLTGNLLDVANIDHLVERCEAVFQGQVDLVTA 233

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A    AL +L+ GG FL+K F      +  +L  L   
Sbjct: 234 DGSIDCAAQPDCQEEIVVRLFFAEVLSALRILSGGGSFLLKMFTLFEACSVSLLYTLNCI 293

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   + K
Sbjct: 294 FEEVHIFKPATSKRGNSEVYVICLNYHK 321


>gi|73972755|ref|XP_538896.2| PREDICTED: similar to CG6379-PA isoform 1 [Canis familiaris]
          Length = 1090

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 713 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 772

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 773 DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 832

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 833 VRTGGHFICKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 888


>gi|194383894|dbj|BAG59305.1| unnamed protein product [Homo sapiens]
          Length = 726

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG F+ K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 30  GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRRESAEIFVVCQGF 79


>gi|270000765|gb|EEZ97212.1| hypothetical protein TcasGA2_TC011004 [Tribolium castaneum]
          Length = 608

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNPD 137
           W            +   ++  D L         F   F  +     +   + + I     
Sbjct: 146 WGANTLNPDHEGNSPQEMIPDDRLLRHTYKNWYFGSDFTGNVTKYCNHVDLVEKIHEKVW 205

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCL 195
           LV +D +                L    T  AL +L  GG F++K F     +   +L L
Sbjct: 206 LVTADGSIDCSSDPGNQESHVEFLHYCETLTALALLKPGGSFVLKIFTMFEHSTICLLYL 265

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           L   F KV   KP +S++ + E++++ + F+
Sbjct: 266 LNVCFGKVSLFKPGSSKSGNSEVYVICQHFK 296


>gi|308197136|sp|A8XYX3|MTR1B_CAEBR RecName: Full=Inactive cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1B; AltName:
           Full=Inactive cap1 2'O-ribose methyltransferase 1B;
           Short=MTr1B
 gi|309356153|emb|CAP37840.2| hypothetical protein CBG_20907 [Caenorhabditis briggsae AF16]
          Length = 846

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPI------LGVKFF----KFDF 119
           D+ + PG +S+          +      +   D   ++            F+      D 
Sbjct: 240 DVCAGPGGFSEYMLWRKAFYNAKGFGFTLAGKDDFKLQKFTASSAYFFETFYGTKKNGDV 299

Query: 120 LDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           +D ++ + + + I     G    L+++D A+   G   I  + +  L       +L ++ 
Sbjct: 300 MDPENIDSLEKLISEGTDGQGVHLMMADGAFSVQGQENIQEILSKRLYLCQLLVSLCIVR 359

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG+FL   F      +  ++ L++  +  +   KP  SR  + E F++ KG R
Sbjct: 360 EGGNFLCNLFDIFTPFSVGLIYLMRVCYDSISLHKPHTSRPANSERFVVCKGLR 413


>gi|301779423|ref|XP_002925128.1| PREDICTED: s-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2-like [Ailuropoda melanoleuca]
 gi|308197108|sp|D2HRF1|MTR1_AILME RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|281344017|gb|EFB19601.1| hypothetical protein PANDA_014567 [Ailuropoda melanoleuca]
          Length = 835

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSAGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|74152928|dbj|BAE34476.1| unnamed protein product [Mus musculus]
          Length = 429

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 34/221 (15%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPG------------- 79
           V++A       ++  K  +I     +      QS R   + L  +PG             
Sbjct: 102 VKKAVNAELCTQAWCKFQEILCSFPLIPQEAFQSGRLNSLHLCEAPGAFIASLNHYLKSH 161

Query: 80  ------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF----KFDFLDLDSWEFIR 129
                 SW   +        +N R++  D L M   L   +F      D + L     ++
Sbjct: 162 RFPCEWSWVANSLNPYHEANDNLRMITDDRL-MANTLHCWYFGPDNTGDIMTLKYLTGLQ 220

Query: 130 QAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
             + G     LV +D ++   G+         SL       AL  L  GG F++K F   
Sbjct: 221 DFLSGMSPIHLVTADGSFDCQGNPGEQEALVSSLHYCEAVTALITLGDGGSFVLKMFTLF 280

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 281 EHCSVNLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLRYK 321


>gi|31981920|ref|NP_666327.2| ftsJ methyltransferase domain-containing protein 1 [Mus musculus]
 gi|81875546|sp|Q8BWQ4|FTSJ1_MOUSE RecName: Full=FtsJ methyltransferase domain-containing protein 1
 gi|26341044|dbj|BAC34184.1| unnamed protein product [Mus musculus]
 gi|148679508|gb|EDL11455.1| cDNA sequence BC025546 [Mus musculus]
          Length = 767

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 34/221 (15%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPG------------- 79
           V++A       ++  K  +I     +      QS R   + L  +PG             
Sbjct: 102 VKKAVNAELCTQAWCKFQEILCSFPLIPQEAFQSGRLNSLHLCEAPGAFIASLNHYLKSH 161

Query: 80  ------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF----KFDFLDLDSWEFIR 129
                 SW   +        +N R++  D L M   L   +F      D + L     ++
Sbjct: 162 RFPCEWSWVANSLNPYHEANDNLRMITDDRL-MANTLHCWYFGPDNTGDIMTLKYLTGLQ 220

Query: 130 QAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
             + G     LV +D ++   G+         SL       AL  L  GG F++K F   
Sbjct: 221 DFLSGMSPIHLVTADGSFDCQGNPGEQEALVSSLHYCEAVTALITLGDGGSFVLKMFTLF 280

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 281 EHCSVNLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLRYK 321


>gi|312370994|gb|EFR19278.1| hypothetical protein AND_22770 [Anopheles darlingi]
          Length = 742

 Score = 77.3 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 35/218 (16%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGS----------------- 80
           +V +A  + +   +AY+L  I+ +   L S    V L  +PG+                 
Sbjct: 134 FVTQAFAKLYECVAAYEL--IDTEANHLYS----VHLCEAPGAFVTALNHYIRLNCRPRM 187

Query: 81  ---WSQVAARITGSNANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFIRQAIG 133
              W                ++  D   +  +     GV     D L  ++   I +   
Sbjct: 188 AWDWFACTLNPYYEGNCPGNMIPDDRFILHTLDRWCFGVD-ATGDILVRENRAAIIERSC 246

Query: 134 --GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTT 189
                 LV +D +   +   +    R   L  A T  AL +L IGG F++K F     ++
Sbjct: 247 QWPMVHLVTADGSIDCLDVPEEQEERVSVLHLAETIIALSVLGIGGHFVLKMFTLFEHSS 306

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            ++L LL   F+++   KP  S+  + E++L+AK +R+
Sbjct: 307 VNLLFLLHHCFEELHVFKPCTSKPGNSEVYLIAKRYRR 344


>gi|13365825|dbj|BAB39298.1| hypothetical protein [Macaca fascicularis]
          Length = 750

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 190 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 249

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 250 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 309

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 310 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 365


>gi|19344074|gb|AAH25546.1| FtsJ methyltransferase domain containing 1 [Mus musculus]
          Length = 767

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 34/221 (15%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPG------------- 79
           V++A       ++  K  +I     +      QS R   + L  +PG             
Sbjct: 102 VKKAVNTELCTQAWCKFQEILCSFPLIPQEAFQSGRLNSLHLCEAPGAFIASLNHYLKSH 161

Query: 80  ------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF----KFDFLDLDSWEFIR 129
                 SW   +        +N R++  D L M   L   +F      D + L     ++
Sbjct: 162 RFPCEWSWVANSLNPYHEANDNLRMITDDRL-MANTLHCWYFGPDNTGDIMTLKYLTGLQ 220

Query: 130 QAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
             + G     LV +D ++   G+         SL       AL  L  GG F++K F   
Sbjct: 221 DFLSGMSPIHLVTADGSFDCQGNPGEQEALVSSLHYCEAVTALITLGDGGSFVLKMFTLF 280

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 281 EHCSVNLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLRYK 321


>gi|194755743|ref|XP_001960143.1| GF11674 [Drosophila ananassae]
 gi|190621441|gb|EDV36965.1| GF11674 [Drosophila ananassae]
          Length = 702

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAAR-------------ITGSNANNT 96
           +  K  +   ++ +++      + L  +PG++                      S   N 
Sbjct: 117 AWCKFFECLHRYPLIKSPVINTLHLCEAPGAFIASLNHYLHSTYKEDEIQWRWRSTTLNP 176

Query: 97  RVVAIDILDMEPILGVKFFKFD--------------FLDLDSWEFIRQA-IGGNPDLVLS 141
                 + +M       F   D                +++S      A   G  DL+ +
Sbjct: 177 YYEGNALNEMVTDDRFIFHTLDNWLFHKDLTGNLLNVTNIESMAARCAADFQGKVDLITA 236

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +              + L  A  F AL++L+ GG+F+VK F      +  +L +L   
Sbjct: 237 DGSIDCAAQPDCQEEIVVRLFFAEVFSALKILSPGGNFVVKMFTLFEACSVSLLYMLNCI 296

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F +V   KP  S+  + E++++   + K
Sbjct: 297 FHQVHIFKPATSKRGNSEVYVICLDYLK 324


>gi|58257642|dbj|BAA07893.2| KIAA0082 [Homo sapiens]
          Length = 882

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 322 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 381

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 382 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 441

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 442 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 497


>gi|328717828|ref|XP_001943568.2| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
           1-like [Acyrthosiphon pisum]
          Length = 927

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 19/170 (11%)

Query: 73  DLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-------PILGVKFFKFDFLDLDSW 125
           D+ + PG +S+         A        +  D +            + F     D D +
Sbjct: 380 DICAGPGGFSEYVLWRKSWKAKGVGFTLRNANDFKLNDFYAGSPESFEAFYGHDEDGDVY 439

Query: 126 E----------FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           +           ++   G     V++D  +   G      + +  L       AL +L  
Sbjct: 440 KPKNILSLERYVMKMTEGKGVHFVMADGGFSVDGQESFQEILSKRLYLCQALAALSILQP 499

Query: 176 GGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           GG F+ K F   T     +L LL + F+++   KPV SR  + E +++ K
Sbjct: 500 GGHFMCKLFDIFTEFSAGLLFLLYQSFKQISIYKPVTSRPANSERYVICK 549


>gi|311260344|ref|XP_001924245.2| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
           [Sus scrofa]
          Length = 835

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|158294159|ref|XP_315423.4| AGAP005415-PA [Anopheles gambiae str. PEST]
 gi|157015436|gb|EAA11922.4| AGAP005415-PA [Anopheles gambiae str. PEST]
          Length = 720

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 38/218 (17%)

Query: 47  WRARSAY------KLLQINEKHQILQSNRR---IVDLGSSPGS----------------- 80
           +R R+ +      KL +    ++++   ++    V L  +PG+                 
Sbjct: 104 YRIRAEFVTQAFAKLYECVSAYELIDGQQQELYSVHLCEAPGAFVTGLNHYIRLHCAPRT 163

Query: 81  ---WSQVAARITGSNANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFIRQAIG 133
              W                ++  D   +  +     G      D +  ++ + I +   
Sbjct: 164 KWAWFACTLNPHYEGNCPGNMIPDDRFILHTLGSWCFGADG-TGDIMVRENRDAIIKRSQ 222

Query: 134 GNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTT 189
             P   LV +D +   +   +    R   L  A T  AL +L+ G  F++K F     ++
Sbjct: 223 RFPTVHLVTADGSIDCLNVPEEQEERVAKLHLAETVLALSVLSPGQHFVLKMFTLFEHSS 282

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
             +L LL   F ++   KP  S+  + E++++AK +R+
Sbjct: 283 VSLLFLLNHCFDELHVFKPCTSKPGNSEVYIVAKHYRQ 320


>gi|332848817|ref|XP_003315726.1| PREDICTED: putative rRNA methyltransferase 3 isoform 2 [Pan
           troglodytes]
          Length = 726

 Score = 76.9 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG F+ K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 30  GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGF 79


>gi|297273385|ref|XP_002800609.1| PREDICTED: putative rRNA methyltransferase 3-like [Macaca mulatta]
          Length = 722

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG F+ K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 30  GGCFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGF 79


>gi|195564988|ref|XP_002106089.1| GD16313 [Drosophila simulans]
 gi|194203460|gb|EDX17036.1| GD16313 [Drosophila simulans]
          Length = 503

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDIL 193
               ++D  +   G + I  + +  L       AL++L   G F+ K F      +  ++
Sbjct: 7   VHFAMADGGFSVEGQKNIQEILSKQLYLCQFLTALKILRPNGSFVCKLFDLFTPFSVGLV 66

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            L+ + FQ++  +KP +SR  + E +L+ K +++
Sbjct: 67  YLMYQCFQQIAIIKPNSSRPANSERYLVCK-YKR 99


>gi|332263869|ref|XP_003280973.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 1 [Nomascus leucogenys]
 gi|332263871|ref|XP_003280974.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 2 [Nomascus leucogenys]
 gi|332263873|ref|XP_003280975.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 3 [Nomascus leucogenys]
 gi|332263875|ref|XP_003280976.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 4 [Nomascus leucogenys]
 gi|332263877|ref|XP_003280977.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 5 [Nomascus leucogenys]
 gi|332263879|ref|XP_003280978.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 6 [Nomascus leucogenys]
 gi|332263881|ref|XP_003280979.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 7 [Nomascus leucogenys]
          Length = 770

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 32/209 (15%)

Query: 50  RSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPGSWSQVAARITGSNANNTRV--VAI 101
           ++  K  +I     +      Q+ +   + L  +PG++         S+    R   VA 
Sbjct: 113 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCRWSWVAN 172

Query: 102 DILD-----------MEPILGVKFF---------KFDFLDLDSWEFIRQAIGGNP--DLV 139
            +             M+  L                D + L     ++  I       LV
Sbjct: 173 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLV 232

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLK 197
            +D ++   G+         SL       AL  L  GG F++K F      + +++ LL 
Sbjct: 233 TADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLN 292

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F +V   KP  S+A + E++++   ++
Sbjct: 293 CCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|109070997|ref|XP_001117026.1| PREDICTED: s-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2-like isoform 1 [Macaca mulatta]
 gi|297290745|ref|XP_002803764.1| PREDICTED: s-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2-like [Macaca mulatta]
          Length = 835

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|242014593|ref|XP_002427971.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212512470|gb|EEB15233.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 668

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND-- 191
           G   +V +D +     +          L       AL +L  GG+F+VK F         
Sbjct: 222 GPVLMVTADGSIDCQNNPGEQESIVSCLVYCEIVCALHILAKGGNFVVKMFTMYEEQTIC 281

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           ++ LL   F+ V   KP +S+  + E +++   +
Sbjct: 282 LMYLLVCSFEYVHVFKPASSKEGNSENYVICLNY 315


>gi|332846366|ref|XP_003315241.1| PREDICTED: LOW QUALITY PROTEIN: ftsJ methyltransferase
           domain-containing protein 1-like [Pan troglodytes]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|168277830|dbj|BAG10893.1| FLJ11171 protein [synthetic construct]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|158258565|dbj|BAF85253.1| unnamed protein product [Homo sapiens]
          Length = 835

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|119579650|gb|EAW59246.1| hypothetical protein FLJ11171, isoform CRA_a [Homo sapiens]
 gi|119579651|gb|EAW59247.1| hypothetical protein FLJ11171, isoform CRA_a [Homo sapiens]
 gi|189054682|dbj|BAG37532.1| unnamed protein product [Homo sapiens]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|297284403|ref|XP_001100343.2| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 1 [Macaca mulatta]
 gi|297284405|ref|XP_002802586.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 2 [Macaca mulatta]
 gi|297284407|ref|XP_002802587.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 3 [Macaca mulatta]
 gi|297284409|ref|XP_002802588.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 4 [Macaca mulatta]
 gi|297284411|ref|XP_002802589.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 5 [Macaca mulatta]
 gi|297284413|ref|XP_002802590.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           isoform 6 [Macaca mulatta]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|153791865|ref|NP_060818.4| ftsJ methyltransferase domain-containing protein 1 [Homo sapiens]
 gi|153792086|ref|NP_001093112.1| ftsJ methyltransferase domain-containing protein 1 [Homo sapiens]
 gi|269849596|sp|Q8IYT2|FTSJ1_HUMAN RecName: Full=FtsJ methyltransferase domain-containing protein 1;
           AltName: Full=Protein adrift homolog
 gi|21759769|gb|AAH34468.1| FTSJD1 protein [Homo sapiens]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|23273317|gb|AAH35005.1| FtsJ methyltransferase domain containing 1 [Homo sapiens]
 gi|325463439|gb|ADZ15490.1| FtsJ methyltransferase domain containing 1 [synthetic construct]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|10434996|dbj|BAB14452.1| unnamed protein product [Homo sapiens]
          Length = 586

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 23  TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 82

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 83  GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 137


>gi|24307983|ref|NP_055865.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Homo
           sapiens]
 gi|197102002|ref|NP_001125983.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Pongo
           abelii]
 gi|332823946|ref|XP_527377.3| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
           [Pan troglodytes]
 gi|74750894|sp|Q8N1G2|MTR1_HUMAN RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           Short=hMTr1; AltName: Full=FtsJ methyltransferase
           domain-containing protein 2; AltName:
           Full=Interferon-stimulated gene 95 kDa protein;
           Short=ISG95
 gi|75041693|sp|Q5R981|MTR1_PONAB RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|21619429|gb|AAH31890.1| FtsJ methyltransferase domain containing 2 [Homo sapiens]
 gi|55729904|emb|CAH91679.1| hypothetical protein [Pongo abelii]
 gi|56206050|emb|CAI19603.1| FtsJ methyltransferase domain containing 2 [Homo sapiens]
 gi|119624351|gb|EAX03946.1| KIAA0082 [Homo sapiens]
 gi|168278501|dbj|BAG11130.1| KIAA0082 protein [synthetic construct]
          Length = 835

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|7023671|dbj|BAA92047.1| unnamed protein product [Homo sapiens]
          Length = 770

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|332255681|ref|XP_003276961.1| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
           [Nomascus leucogenys]
          Length = 835

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|147906507|ref|NP_001085512.1| cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Xenopus
           laevis]
 gi|82184587|sp|Q6GQ76|MTR1_XENLA RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|49115039|gb|AAH72871.1| MGC80283 protein [Xenopus laevis]
          Length = 846

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 39/217 (17%)

Query: 50  RSAYKLLQINEKHQ--ILQSNRR---------------IVDLGSSPGSWSQVA--ARITG 90
           R+A K+  I+                              D+ + PG +S+     +   
Sbjct: 235 RAAMKMANIDHVFDYMFTNPKDSQGKPKLKDKESELLYFADVCAGPGGFSEYVLWRKKWH 294

Query: 91  SNANNTRVVAIDILDMEPILGVK-------------FFKFDFLDLDSWEFIRQAI----- 132
           +      +   +   +E                       D    ++    R  I     
Sbjct: 295 AKGFGMTLKGPNDFKLEDFYAAPSELFEPYYGEGGVDGDGDVTRPENITAFRNFILDNTD 354

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTN 190
                 +++D  +   G   I  + +  L        L ++  GG F+ KTF      + 
Sbjct: 355 HKGVHFMMADGGFSVEGQENIQEILSKQLLLCQFLVGLHVIRTGGHFICKTFDLFTPFSV 414

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            ++ LL   F++V   KP+ SR  + E +++ +G ++
Sbjct: 415 GLIYLLYCCFERVCLFKPLTSRPANSERYVVCRGLKE 451


>gi|156548314|ref|XP_001602770.1| PREDICTED: similar to FLJ11171 protein [Nasonia vitripennis]
          Length = 706

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 44/231 (19%)

Query: 40  QRAQLEGWRAR----------SAYKLLQINEKH------QILQSNRRIVDL--GSSPG-- 79
            +A+   WR R          +  K  +I  K        I  +N +++ L    +PG  
Sbjct: 101 NKAKDVEWRVRKEFDPEFVTQAWCKFHEIVSKFSLVPRENIFANNNKLLSLHLCEAPGAF 160

Query: 80  -----------------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
                            +W  +         +N ++++ D   M  +    F K +  +L
Sbjct: 161 ITCLNHWLKTNMPTVHWNWLAMTFNPYYEGNSNAKMISDDRFIMHTLNNWFFGKDNTGNL 220

Query: 123 DSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            + E +   I      G  +L+ +D +   I +         SL  +    A+ +L  GG
Sbjct: 221 MTIENLEALIEKAKAKGKVNLITADGSVNCISNPGEQEGIVTSLHFSEVLAAMHILEAGG 280

Query: 178 DFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + L+K F         ++  L   F+ ++  KPV S+  + E +++   F+
Sbjct: 281 NLLIKIFTVFEHQSICLIYFLSCVFKNIMFYKPVTSKEGNSETYMICLNFK 331


>gi|296231527|ref|XP_002761179.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 1 [Callithrix jacchus]
 gi|296231529|ref|XP_002761180.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1
           isoform 2 [Callithrix jacchus]
          Length = 770

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       L+ +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKYLTGLQNFISSMATIHLITADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK 321


>gi|126723764|ref|NP_001075899.1| FtsJ methyltransferase domain containing 2 [Bos taurus]
 gi|308197109|sp|A2VE39|MTR1_BOVIN RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1;
           AltName: Full=FtsJ methyltransferase domain-containing
           protein 2
 gi|126010617|gb|AAI33560.1| FTSJD2 protein [Bos taurus]
 gi|296474506|gb|DAA16621.1| FtsJ methyltransferase domain containing 2 [Bos taurus]
          Length = 835

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDIL 193
              +++D  +   G   +  + +  L       AL ++  GG F+ KTF      +  ++
Sbjct: 358 VHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSVVRTGGHFICKTFDLFTPFSVGLI 417

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 418 YLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|194223469|ref|XP_001917983.1| PREDICTED: similar to KIAA0082 [Equus caballus]
          Length = 812

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|302841276|ref|XP_002952183.1| hypothetical protein VOLCADRAFT_62343 [Volvox carteri f.
           nagariensis]
 gi|300262448|gb|EFJ46654.1| hypothetical protein VOLCADRAFT_62343 [Volvox carteri f.
           nagariensis]
          Length = 273

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 35/195 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTR-----------VVAIDILDMEP------ 108
           +     V L  +PG++         ++  N R             A D   M        
Sbjct: 58  KPGVVSVHLCEAPGAFIAATNHFVKTHRQNWRWDWMAVSLNPYCEANDKFAMIEDDALIA 117

Query: 109 ------ILGVKFFKFDFLDLDSWEFI---------RQAIGGNPDLVLSDMAYPTIGHRKI 153
                   G      D   + + + I         R    G   +V +D A  T      
Sbjct: 118 ATMPNWCFGADN-TGDIRRISNIQAIWDRGKELCTRMGCPGGVLMVTADGAVDTSMDPNR 176

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVAS 211
             + T SL       AL +L +GG+F+ K F       I  L L+   F KV+  KP  S
Sbjct: 177 QEMITASLHYCEVVAALGLLAVGGNFVWKGFTLYEHPSICSLFLMGCLFDKVLVYKPATS 236

Query: 212 RAESVEMFLLAKGFR 226
           +  + E++++ KGFR
Sbjct: 237 KPANSEVYVVGKGFR 251


>gi|296198064|ref|XP_002746545.1| PREDICTED: S-adenosyl-L-methionine-dependent methyltransferase
           FTSJD2 [Callithrix jacchus]
          Length = 835

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 335 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E +++ KG +
Sbjct: 395 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLK 450


>gi|291390448|ref|XP_002711720.1| PREDICTED: adrift-like [Oryctolagus cuniculus]
          Length = 769

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 32/220 (14%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPGSWSQVAARITGSN 92
           V++A       ++  K  +I     +      Q+ R   V L  +PG++         S+
Sbjct: 104 VRKAVNAELCTQAWCKFHEILCSFPLLPQEAFQNGRLNSVHLCEAPGAFIASLNHYLKSH 163

Query: 93  --ANNTRVVAIDILD-----------MEPILGVKFFK---------FDFLDLDSWEFIRQ 130
                   VA  +             M+  L     +          D + L     ++ 
Sbjct: 164 RFPCEWSWVANTLNPYHEANDNLMMVMDDRLIANTLQWWYFGPDNTGDIMTLKYLTGLQD 223

Query: 131 AIG--GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            +       LV +D ++   G+         SL       AL  L  GG F++K F    
Sbjct: 224 FLSSMDTVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGSGGSFVLKMFTLFE 283

Query: 189 --TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 284 HCSINLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLHYK 323


>gi|66815279|ref|XP_641656.1| D111/G-patch domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|74856229|sp|Q54WR1|MTR1_DICDI RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|60469747|gb|EAL67735.1| D111/G-patch domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 757

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 79/240 (32%), Gaps = 52/240 (21%)

Query: 38  YVQRAQLEGWRA--------RSAYKLLQINEKHQILQSNRRIV----------DLGSSPG 79
           YV R +   + +        R+A K+  I++   +L     +           D+ + PG
Sbjct: 198 YVARKKSNPYESIKGSIFINRAAVKMANIDKLADLLTPIIPVPGKPRDFIYFGDVCAGPG 257

Query: 80  SWSQVAARITGSNANNTRVVAIDILDM--------------------EPILGVKFFKFDF 119
            +++                 +D+ D+                    + I    F K   
Sbjct: 258 GFTEYVYWKKTRGGKIKGEEGLDLDDVVKGFGFTIKGQCDWNVEKFSKQIPIHNFVKEYG 317

Query: 120 LDLD------------SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
           LD              S +      G    L L+D    T G   +  L    L      
Sbjct: 318 LDDTGNILKSENIRDFSSKVFYNTNGFGLQLFLADGGINTDGKESLQELMLQQLILCQIL 377

Query: 168 FALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              E +  GG+F+ K F   T  T  +L L+ +HFQ    VKP  SR  + E +++ K F
Sbjct: 378 TMFETIGRGGNFVCKIFDTFTPFTIGLLYLVYQHFQSFSIVKPFTSRPLNSERYIICKNF 437


>gi|312383048|gb|EFR28279.1| hypothetical protein AND_04009 [Anopheles darlingi]
          Length = 841

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 23/188 (12%)

Query: 58  INEKHQILQSNRRI---VDLGSSPGSWS-------QVAARITG------SNANNTRVVAI 101
           ++   Q+      +    D+ + PG +S          A+  G      ++      +A 
Sbjct: 136 LDRHGQLFVKEDEVFFFADVCAGPGGFSEYILWRKGWRAKGFGFTLRGENDFKLDGFIAG 195

Query: 102 DILDMEPILGVKFFKFDFLDLDSW----EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
                +P  G      +  D  +     E++ +       L+++D          I  + 
Sbjct: 196 TPETFDPYYG-PNDDGNIYDPANIDGFSEYVLRQTNTGVHLMVADGGISVKNEENIQEIL 254

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAES 215
              L       AL+++   G  ++K F      +  ++ LL + F ++   KP +SR  +
Sbjct: 255 LKQLYLCQVIVALDIVRPNGSLVLKVFDQFTPFSVGLVYLLYRCFGQISICKPNSSRPAN 314

Query: 216 VEMFLLAK 223
            E +++ K
Sbjct: 315 SERYIVCK 322


>gi|327262300|ref|XP_003215963.1| PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
           1-like [Anolis carolinensis]
          Length = 857

 Score = 75.3 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGVK-------------FFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 274 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYAAPSELFEPYYGEGGIEGDG 333

Query: 118 DFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    ++ +           +++D  +   G   I  + +  L        L +
Sbjct: 334 DITRPENITAFQKFVLDNTDQKGVHFLMADGGFSVEGQENIQEILSKQLTLCQFLTGLSV 393

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ +G +
Sbjct: 394 IRTGGHFICKTFDLFTPFSVGLVYLLYCCFERVSIFKPVTSRPANSERYVVCRGLK 449


>gi|301604142|ref|XP_002931731.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 729

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 36/210 (17%)

Query: 50  RSAYKLLQINEKHQILQSNR------RIVDLGSSPG-------------------SWSQV 84
           ++  K  +I  K+ +L +N         V L  +PG                   +W   
Sbjct: 95  QAWCKFHEIAWKYPLLPTNAVWNSELNTVHLCEAPGAFIASLNHYLKTQDDCCDWNWVAN 154

Query: 85  AARITGSNANNTRVVAIDILDMEPIL----GVKFFKFDFLDLDSWEFIRQAIGGN--PDL 138
                    +   ++A D      +     G      D + +     ++Q I       L
Sbjct: 155 TLNPYHEANDGLVMIADDRFIANTLPWWYFGPDN-TGDIMTIKYLNGLQQFISNMSAVHL 213

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF---QGGTTNDILCL 195
           V +D ++   G           L        L  L+ GG F++K F   Q  + N ++ L
Sbjct: 214 VTADGSFDCQGDPGEQESLVSPLHYCEVVTCLLTLSKGGSFVLKMFTLFQHSSIN-LMYL 272

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L   F +V  +KP  S+A + E++++   +
Sbjct: 273 LNCCFSEVHIIKPGTSKAGNSEVYVVCLDY 302


>gi|195153363|ref|XP_002017597.1| GL17223 [Drosophila persimilis]
 gi|194113393|gb|EDW35436.1| GL17223 [Drosophila persimilis]
          Length = 704

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
               E  +    G  DL+ +D +              + L  A T  AL +L  GG F+V
Sbjct: 204 ERCAEDFKDNGSGGVDLITADGSIDCAAQPDCQEEIVVRLFFAETICALRILKTGGKFVV 263

Query: 182 KTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K F      +  +L +L   F++V   KP  S+  + E++++   ++K
Sbjct: 264 KMFTLFEACSVSLLYMLNCIFEQVHIYKPATSKRGNSEVYVICLNYQK 311


>gi|125811195|ref|XP_001361785.1| GA18609 [Drosophila pseudoobscura pseudoobscura]
 gi|54636961|gb|EAL26364.1| GA18609 [Drosophila pseudoobscura pseudoobscura]
          Length = 704

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
               E  +    G  DL+ +D +              + L  A T  AL +L  GG F+V
Sbjct: 204 ERCAEDFKDNGSGGVDLITADGSIDCAAQPDCQEEIVVRLFFAETICALRILKTGGKFVV 263

Query: 182 KTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           K F      +  +L +L   F++V   KP  S+  + E++++   ++K
Sbjct: 264 KMFTLFEACSVSLLYMLNCIFEQVHIYKPATSKRGNSEVYVICLNYQK 311


>gi|115656140|ref|XP_001203540.1| PREDICTED: similar to CDNA sequence BC025546, partial
           [Strongylocentrotus purpuratus]
 gi|115681669|ref|XP_785039.2| PREDICTED: similar to CDNA sequence BC025546, partial
           [Strongylocentrotus purpuratus]
          Length = 906

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 116 KFDFLDLDSWE----FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
             D +   +       I+Q + G   LV +D +       +    R   L    +  AL+
Sbjct: 84  TGDVMSAANLAGLERLIQQEMNGTVHLVTADGSVNCQDDPEHQEHRVFPLVFCQSLTALK 143

Query: 172 MLNIGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +L   G FLVK F     N   ++ LL   F++V  +KP  S+A + E++++ K +
Sbjct: 144 LLAPEGAFLVKMFTMYNANTACLMNLLNIAFKEVTVLKPACSKAGNSEVYVMCKSY 199


>gi|195121712|ref|XP_002005364.1| GI19115 [Drosophila mojavensis]
 gi|193910432|gb|EDW09299.1| GI19115 [Drosophila mojavensis]
          Length = 697

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQILQ-SNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  K  +   ++ +++      + L  +PG                      W       
Sbjct: 98  AWCKFFECLHRYPLIKQPELNTLHLCEAPGAFIAALNHYLHSTYTKEEINWHWRSTTLNP 157

Query: 89  TGSNANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQA----IGGNPDLVLS 141
                    ++  D      +    F   F  + L++++ E +R      +     L+ +
Sbjct: 158 YYEGNGLNEMITDDRFIFHTLNNWLFHRDFTGNLLNVENIEHMRDVCAKDLPAGVQLITA 217

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +                L  A    AL +L+  G+F++K F      +  I+ +L   
Sbjct: 218 DGSIDCSAQPDCQEEIVARLLFAEILSALHILSPSGNFVIKMFTLFEACSVSIMFMLNCI 277

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F++V   KP  S+  + E++++   ++K
Sbjct: 278 FERVHIFKPATSKRGNSEVYVICLNYQK 305


>gi|47224577|emb|CAG03561.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 768

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAID--ILDMEPILGVKF----------FKF 117
           D+ + PG +S+      R        T     D  + D        F             
Sbjct: 196 DVCAGPGGFSEYILWRRRWHAKGFGMTLKGPCDFKLEDFYAAPSELFEPYYGEGGVDGDG 255

Query: 118 DFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +           +++D  +   G   I  + +  L       AL  
Sbjct: 256 DITRPENITAFRNFVLENTDKRGLHCLMADGGFSVEGQENIQEVLSKQLLLCQFLTALST 315

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ KTF      +  ++ LL   F+++   KPV SR  + E +++ +G +
Sbjct: 316 VRTGGHFVCKTFDLFTPFSVGLIYLLYLCFERISLFKPVTSRPANSERYVVCRGLK 371


>gi|195436461|ref|XP_002066186.1| GK22226 [Drosophila willistoni]
 gi|194162271|gb|EDW77172.1| GK22226 [Drosophila willistoni]
          Length = 694

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 32/209 (15%)

Query: 51  SAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRV----------- 98
           +  K  ++  ++ ++       V L  +PG++         S      +           
Sbjct: 103 AWCKFFEVLHRYPVVSQPKLNTVHLCEAPGAFIAALNHYLHSKYQKDEIKWNWRSTTLNP 162

Query: 99  --VAIDILDMEPILGVKFFKFD--FLDLD--------------SWEFIRQAIGGNPDLVL 140
                 + +M       F   D      D              +   ++   G   DL+ 
Sbjct: 163 YYEGNALTEMITDDRFIFHTLDHWIFHEDLTGNLINVSNIKGMTDRCMKDFAGQEVDLIT 222

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
           +D +       +        L  A    AL +L  GG F++K F      +  +L LL  
Sbjct: 223 ADGSIDCAQQPESQEEIVQRLFSAEIITALSILKKGGTFVIKMFTLFEACSVSLLYLLNC 282

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            F+ V   KP  S+  + E++++   ++K
Sbjct: 283 VFENVNLYKPATSKRGNSEVYVICLDYQK 311


>gi|213407428|ref|XP_002174485.1| SAM-dependent methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212002532|gb|EEB08192.1| SAM-dependent methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 284

 Score = 74.2 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 75/234 (32%), Gaps = 70/234 (29%)

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
           QI  K+ I + N+ ++DLG +PG W++ AA          RV+ +D++         F +
Sbjct: 49  QIQRKYNIFKPNQLVLDLGCAPGYWNRYAASHVKP---FGRVIGLDVVPCHVDRNSSFLQ 105

Query: 117 FDFLDLDSW-EFIRQAIGG-------------------------------------NPDL 138
             FL      E IR A+                                         D+
Sbjct: 106 GSFLSSGVQHELIRMAVRAQQLRDVKQVGSSKDYATILTELQHSEDMYTKLSYSDVQVDV 165

Query: 139 VLSDMAYP------------TIGHRKIDHLRT---------MSLCEAATFFALEMLNIGG 177
           VLSD+  P               ++ +   +          + L  AA       L   G
Sbjct: 166 VLSDLMAPLPRNAPFEPRFVRNAYKTMLLSKQLAVDSCKDSILLAHAALVLCFRSLKQSG 225

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHVK----PVASRAESVEMFLLAKGFRK 227
            F+ K  +G  T      L   F+ V  V     P A    S  +F +  G R+
Sbjct: 226 IFVCKVLRGDETFAFRDNLLLTFETVHQVSCFRDPQA---RSQTVF-ICFGKRE 275


>gi|157127278|ref|XP_001654901.1| hypothetical protein AaeL_AAEL010786 [Aedes aegypti]
 gi|108872969|gb|EAT37194.1| conserved hypothetical protein [Aedes aegypti]
          Length = 520

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 81/227 (35%), Gaps = 38/227 (16%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ--ILQSN-----RRIVDLGSSPGS 80
            W  R+ ++P+  +A       R+A K+  ++      + Q          VD+   PG 
Sbjct: 88  RW-ARNRSNPFDVKAGQFM--TRAAVKIANVDAIFGWQLCQRGESDDLMYFVDVFGGPGG 144

Query: 81  ----------------WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
                           +          +    R+ A      +P  G    + +  D ++
Sbjct: 145 CSEYVLWRNDGWNAKGFGFSTKGDYEFHPEMFRMGA--PESFDPFYGAND-EGNIFDPEN 201

Query: 125 WEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                + +          L++ D  +    + +    + + LC      A+ ++  GG+ 
Sbjct: 202 VASFVEYVKSQTDRLGAHLIMCDGGFFVKNNCQEIISKQLYLCLVLL--AVAVIRPGGNA 259

Query: 180 LVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++K F      +  ++ +L K + KV  VKP +SR  + E +L+ + 
Sbjct: 260 ILKVFDLYTSFSVGLVYILTKSYGKVSIVKPASSRPANSERYLVCQN 306


>gi|157818599|ref|NP_001099656.1| ftsJ methyltransferase domain-containing protein 1 [Rattus
           norvegicus]
 gi|149038174|gb|EDL92534.1| rCG51680 [Rattus norvegicus]
          Length = 767

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 32/220 (14%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPG------------- 79
           V++A       ++  K  +I     +      QS R   + L  +PG             
Sbjct: 102 VRKAVNAELCTQAWCKFQEILCSFPLIPQEAFQSGRLNSLHLCEAPGAFIASLNHYLKSH 161

Query: 80  ------SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF---KFDFLDLDSWEFIRQ 130
                 SW   +        +N R++  D L    +    F      D + L     ++ 
Sbjct: 162 RFPCEWSWVANSLNPYHEANDNLRMITDDRLIANTLHRWYFGPDNTGDIMTLKYLTGLQD 221

Query: 131 AIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            + G     LV +D ++   G+          L       AL  L  GG F++K F    
Sbjct: 222 FLSGTSPIHLVTADGSFDCQGNPGEQEALVSPLHYCEAVTALTTLGDGGSFVLKMFTLFE 281

Query: 189 --TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 282 HCSVNLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLCYK 321


>gi|195029559|ref|XP_001987639.1| GH22026 [Drosophila grimshawi]
 gi|193903639|gb|EDW02506.1| GH22026 [Drosophila grimshawi]
          Length = 693

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQILQ-SNRRIVDLGSSPG---------------------SWSQVAARI 88
           +  K  +   ++ +++      + L  +PG                      W       
Sbjct: 98  AWCKFFECLHRYPLVKQPQLNTLHLCEAPGAFIAALNHYLHSVYKHDEVKWRWRSTTLNP 157

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGGN----PDLVLS 141
                    ++  D      +      K    + L++D+ E + +    +      L+ +
Sbjct: 158 YYEGNALNEMITDDRFIFHTLDNWLFHKDLTGNLLNVDNIEHMTKRCAEDLLDEVHLITA 217

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +                L  A    AL +L  GG+F++K F      +  ++ LL   
Sbjct: 218 DGSIDCSAQPDCQEELVARLFVAEIISALNILKDGGNFVIKMFTLFEACSVSLIYLLNCI 277

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           F+ V   KP  S+  + E++++   ++K
Sbjct: 278 FRAVHIYKPATSKRGNSEVYVICMDYQK 305


>gi|221123226|ref|XP_002155024.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 604

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 28/193 (14%)

Query: 62  HQILQSNRRI---VDLGSSPG-------------------SWSQVAARITGSNANNTRVV 99
             +   N  +   V L  +PG                   +W             +  ++
Sbjct: 222 FDLFSENLTVANSVHLCEAPGAFISSLNHYLQSKFYNIKFNWIGTTLNPYYEGNIHGEMI 281

Query: 100 AIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
             D   +E +    F   F  + +   + E + +++G + D+V +D +           +
Sbjct: 282 VDDRFLIETLPNWNFGKDFSGNIMCASNMELLIKSVG-SIDIVTADGSIDCSDDPAEQEI 340

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAE 214
               L    T  AL +L+I G+F++K F         +L  L K F+ V   KP  S++ 
Sbjct: 341 VVAPLLLWETVTALNILSIKGNFVLKIFTTFENFTICLLYFLCKCFESVTLSKPGPSKSG 400

Query: 215 SVEMFLLAKGFRK 227
           + E++++ K ++K
Sbjct: 401 NSEVYVVCKNYQK 413


>gi|157877934|ref|XP_001687259.1| ensangp00000010174-like protein; methyltransferase [Leishmania
           major strain Friedlin]
 gi|75030406|sp|Q4Q089|MTR1_LEIMA RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|68130334|emb|CAJ09646.1| putative methyltransferase [Leishmania major strain Friedlin]
          Length = 400

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 39/218 (17%)

Query: 44  LEGWRARSAYKLLQINEK-------HQILQSNRR-------IVDLGSSPGSWSQVAAR-- 87
              +  R+ +KLL+  E         ++L+             D+   PG++SQ   +  
Sbjct: 84  QRNFSNRAGHKLLESMESTGVWMELSKLLRGKSTKRPRDFAFADVCGGPGAFSQALFQAG 143

Query: 88  -------ITGSNANNTRVVAID---ILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGG 134
                  + G       V  +D    L   P     +      D   L + + +      
Sbjct: 144 RKRGWRHLHGYGMTLAGVSGLDWYAHLLKSPQFTCTYGLDGTGDIFKLSNIDCLASITKA 203

Query: 135 NPD-LVLSDMAYPT----IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GG 187
            P  LV++D  +        +++    R M     A   AL++L  GG F++K F     
Sbjct: 204 APMFLVVADGGFNVDFSVTNYQETISSRIMYGQWLA---ALKLLRKGGCFVLKLFDTFSP 260

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +  +L L    +++V   KP  SR  + E +L+   F
Sbjct: 261 LSRAVLYLSCCMYRRVHVAKPRHSRVVNSERYLVCVDF 298


>gi|170042033|ref|XP_001848746.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167865569|gb|EDS28952.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 769

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 33/207 (15%)

Query: 50  RSAYKLLQINEKHQ--ILQSNRRI-------------VDLGSSPGSWS-------QVAAR 87
           R+A K+  ++                            D+ + PG +S       +  A+
Sbjct: 157 RAAVKMANMDSMFDYMFTSPVDGAGNSLVKDSDLLYFADVCAGPGGFSEYFLWRKKWLAK 216

Query: 88  ITGSNANNTRVVAIDILDMEPILGVKFFKF-----DFLDLDS----WEFIRQAIGGNPDL 138
             G          ++            +       D  D ++     +++ +       +
Sbjct: 217 GFGFTLKECNDFKLEDFKAGTPETFDTYYGPKENGDVFDPENIQAFADYVLRQTETGVHV 276

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
           +++D  +   G      + +  L       AL ++   G F+VK F      +  ++ L+
Sbjct: 277 MMADGGFSVEGRENEQEILSKQLYLCQILVALSIVRTEGHFVVKLFDLFTPFSVGLIYLV 336

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAK 223
            K F+K+   KP  SR  + E +L+ K
Sbjct: 337 SKCFKKISICKPNTSRPANSERYLVCK 363


>gi|156394270|ref|XP_001636749.1| predicted protein [Nematostella vectensis]
 gi|156223855|gb|EDO44686.1| predicted protein [Nematostella vectensis]
          Length = 422

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             D + L++   + +A  G   LV +D +       +        L       AL +L  
Sbjct: 212 TGDLMQLENLNHLAEACQGKVHLVTADGSIDCSDEPEEQENAVSQLIFCEAVTALTVLAT 271

Query: 176 GGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           GG ++ K F     +   ++ L+   F++V  +KP  S+  + E+++   G+
Sbjct: 272 GGCYVFKMFTTLEHHMVCLMYLMCCLFEEVHVIKPGTSKGGNSEVYITCCGY 323


>gi|149640714|ref|XP_001506926.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 764

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 32/208 (15%)

Query: 50  RSAYKLLQINEKHQI-----LQSNR-RIVDLGSSPG-------------------SWSQV 84
           ++  K  +I     +      Q+     V L  +PG                   +W   
Sbjct: 113 QAWCKFHEILCSFPLIPQEAFQNGELNSVHLCEAPGAFIASLNHYLKSHHIPCDWNWVAN 172

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGGNP--DLV 139
                    +N  ++  D L  + +    F      D + L     +++ +G      LV
Sbjct: 173 TLNPYHEANDNVTMIMDDRLIADTLPRWYFGPENTGDVMTLKHLSGLQRFVGDMATVHLV 232

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLK 197
            +D ++   G+          L       AL +L  GG  ++K F      + ++L LL 
Sbjct: 233 TADGSFDCQGNPGEQEALVSPLHYCEVVTALMILGSGGSLVLKMFTLFEHCSVNLLYLLN 292

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
             F++V   KP  S+A + E++++   F
Sbjct: 293 CSFEEVHVFKPGTSKAGNSEVYVVCLNF 320


>gi|322491262|emb|CBZ26528.1| ensangp00000010174-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 400

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 33/215 (15%)

Query: 44  LEGWRARSAYKLLQ-IN------EKHQILQ-------SNRRIVDLGSSPGSWSQVAAR-- 87
              +  R+ +KLL+ +       E  ++L+        N    D+   PG++SQ   +  
Sbjct: 84  QRNFSNRAGHKLLESMESTGVWMELSKLLRGKSMKRPRNFSFADVCGGPGAFSQALFQAG 143

Query: 88  -------ITGSNANNTRVVAID---ILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGG 134
                  + G       V  +D    L   P     +      D   L + + +      
Sbjct: 144 RRQGWRHLHGYGMTLAGVSGLDWYAHLLKSPQFTCTYGLDGTGDIFKLCNIDCLASITKA 203

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMS--LCEAATFFALEMLNIGGDFLVKTFQ--GGTTN 190
            P L++       +     ++  T+S  +       AL++L  GG F++K F      + 
Sbjct: 204 APMLLVVADGGFNVDFSVANYQETISSRIMYGQWLTALKLLRKGGCFVLKLFDTFSPLSR 263

Query: 191 DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +L L    +++V   KP  SR  + E +L+   F
Sbjct: 264 AVLYLSCCMYRRVHVAKPRHSRVVNSERYLVCVDF 298


>gi|301771139|ref|XP_002920991.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           [Ailuropoda melanoleuca]
 gi|281351463|gb|EFB27047.1| hypothetical protein PANDA_009815 [Ailuropoda melanoleuca]
          Length = 766

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  +       L+ +D ++   G+         SL       AL  L
Sbjct: 205 TGDIMTLKYLTGLQNFVSNMATIHLITADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 264

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 265 GNGGSFVLKMFTLFEHCSINLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLHYK 319


>gi|320170922|gb|EFW47821.1| FtsJ methyltransferase domain-containing protein 2 [Capsaspora
           owczarzaki ATCC 30864]
          Length = 840

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 73  DLGSSPGSWSQ-VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF---------LDL 122
           D+ + PG +S+ +  R           +  D      +   +  + DF          ++
Sbjct: 359 DICAGPGGFSEYMLWRRPQLCKVFGFTLRGDQDFTPHLFHPECIQADFHACYGADKTGNM 418

Query: 123 DSWEFIRQAI--------GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            S + IR           G      + D  +   G           L        L +L 
Sbjct: 419 LSSDNIRHFAQTVRDGSNGVGAHFCIGDGGFGVGGDENFQEEHLKQLLLCQFLTGLVVLG 478

Query: 175 IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            GG F+ K F      +  ++ ++ + F++   +KP  SR  + E +++ + F+
Sbjct: 479 PGGTFICKVFDLFTPFSAGLVYIMSRLFRRTCLIKPFTSRPANSERYIVCEDFQ 532


>gi|73957412|ref|XP_546838.2| PREDICTED: similar to CG5032-PA [Canis familiaris]
          Length = 766

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  +       L+ +D ++   G+         SL       AL  L
Sbjct: 205 TGDIMTLKYLTGLQNFVSNMATIHLITADGSFDCQGNPGEQEALVSSLHYCEVVTALMTL 264

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 265 GSGGSFVLKMFTLFEHCSINLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLRYK 319


>gi|194208779|ref|XP_001498370.2| PREDICTED: similar to adrift CG5032-PA [Equus caballus]
          Length = 768

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  +       L+ +D ++   G+         SL       AL  L
Sbjct: 205 TGDIMTLQYLTGLQNFVSNMATIHLITADGSFDCQGNPGEQEALVSSLHYCEVVTALMTL 264

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 265 GNGGSFVLKMFTLFEHCSINLMYLLNCSFDQVHVFKPATSKAGNSEVYVVCLHYK 319


>gi|321398824|emb|CBZ09058.1| ensangp00000010174-like protein [Leishmania infantum JPCM5]
 gi|322504045|emb|CBZ39132.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 400

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 39/218 (17%)

Query: 44  LEGWRARSAYKLLQ--------------INEKHQILQSNRRIVDLGSSPGSWSQVA---- 85
              +  R+ +KLL+              +  K +    +    D+   PG++SQ      
Sbjct: 84  QRNFSNRAGHKLLESMESTGVWMELSKLLRGKSKKRPRDFAFADVCGGPGAFSQALFQAG 143

Query: 86  -----ARITGSNANNTRVVAID---ILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGG 134
                 ++ G       V  +D    L   P     +      D   L + E +      
Sbjct: 144 RKQGWRQLHGYGMTLAGVSGLDWYAHLLKSPQFTCTYGLDGTGDIFKLSNIECLVSITKA 203

Query: 135 NPDL-VLSDMAYPT----IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GG 187
            P L V++D  +        +++    R M     A   AL++L  GG F++K F     
Sbjct: 204 APMLLVVADGGFNVDFSVANYQETISSRIMYGQWLA---ALKLLRNGGCFVLKLFDTFSP 260

Query: 188 TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +  +L L    +++V   KP  SR  + E +L+   F
Sbjct: 261 LSRAVLYLSCCMYRRVHIAKPRHSRVVNSERYLVCVDF 298


>gi|157137547|ref|XP_001664002.1| hypothetical protein AaeL_AAEL013813 [Aedes aegypti]
 gi|108869685|gb|EAT33910.1| conserved hypothetical protein [Aedes aegypti]
          Length = 702

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 81/227 (35%), Gaps = 38/227 (16%)

Query: 28  DWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ--ILQSN-----RRIVDLGSSPGS 80
            W  R+ ++P+  +A       R+A K+  ++      + Q          VD+   PG 
Sbjct: 92  RW-ARNRSNPFDVKAGQFM--TRAAVKIANVDAIFGWQLCQRGESDDLMYFVDVFGGPGG 148

Query: 81  ----------------WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
                           +          +    R+ A      +P  G    + +  D ++
Sbjct: 149 CSEYVLWRNDGWNAKGFGFSTKGDYEFHPEMFRMGA--PESFDPFYGAND-EGNIFDPEN 205

Query: 125 WEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                + +          L++ D  +    + +    + + LC      A+ ++  GG+ 
Sbjct: 206 VASFVEYVKSQTDRLGAHLIMCDGGFFVKNNCQEIISKQLYLCLVLL--AVAVIRPGGNA 263

Query: 180 LVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           ++K F      +  ++ +L K + KV  VKP +SR  + E +L+ + 
Sbjct: 264 ILKVFDLYTSFSVGLVYILTKSYGKVSIVKPASSRPANSERYLVCQN 310


>gi|219127821|ref|XP_002184126.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404357|gb|EEC44304.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 466

 Score = 71.9 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 52/227 (22%)

Query: 50  RSAYKLLQINE--KHQILQSNRR----IVDLGSSPGSWSQVAARITGSNA-NNTRVVAI- 101
           RSA KL  I+   +  + +  +      VDL ++PG +S+   +   +NA    R   + 
Sbjct: 141 RSAIKLANIDAVLRFDLSRPGKNGQFSFVDLCAAPGGFSEYLGKRCHANAVPECRGYGMS 200

Query: 102 ---------------------------------------DILDMEPILGVKFFKFDFLDL 122
                                                  DIL  E I  +     D  D+
Sbjct: 201 LLSTNEYGEATKWKMDDSTSTENGTYAQYRVCEGSDGTGDILKWENIEALHNMVRD--DI 258

Query: 123 DSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +   +  ++  G  DLV++D  +            +  L        L +L  GG  +V
Sbjct: 259 SAVARVESSVEWGKVDLVVADGGFDAQRDSDHQEAISQKLVVCEIAAGLLLLKKGGKLMV 318

Query: 182 K--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K   FQ      ++  L   F+++I +KP++SR  S E +++ +GF+
Sbjct: 319 KMFGFQTEIIRSVMEDLAFTFEEIIALKPISSRPASAERYVVFRGFK 365


>gi|21360808|gb|AAM49718.1|AF458590_1 hypothetical protein [Homo sapiens]
          Length = 340

 Score = 71.5 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNIISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E+++++  ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVSLHYK 321


>gi|167518245|ref|XP_001743463.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778562|gb|EDQ92177.1| predicted protein [Monosiga brevicollis MX1]
          Length = 951

 Score = 71.5 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 32/208 (15%)

Query: 51  SAYKLLQINEKHQILQSNRRI----VDLGSSPGSWSQVAAR----------ITGSNANNT 96
           +  K+ +I  ++++LQ ++ +    V +  +PG++                         
Sbjct: 254 AWCKMYEILARYKLLQQHQEMPFATVHVCEAPGAFVAALNHYLRQLYHRELKWNWTGLTL 313

Query: 97  RVVAIDILDMEPILGVKFF-------------KFDFLDLDSWEFIRQAI---GGNPDLVL 140
                D   ++ +                     + +   + + +R  +       +LV 
Sbjct: 314 NPYYEDNNPIDMVDSDTLILLTESHWHFGHDNTGNMMHAPNLKGLRDRVLQQEMRVELVT 373

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKK 198
            D A+ T  +     + T  L       AL  L  GG  ++K F      +  ++ LL  
Sbjct: 374 GDGAFDTSANPAEQEMLTAQLHYCEAVAALACLAPGGTLVLKMFTFFERCSAALVYLLGG 433

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F+ +   KP  S+A + E +++A+ FR
Sbjct: 434 LFETMDICKPATSKAANSETYIVAQRFR 461



 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 19/185 (10%)

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA----------NNTRVVAIDILD 105
           LQ++ + +   S+ R  D    P     +A R+                   V  +    
Sbjct: 644 LQLDAEDR--PSSERPAD---PPSRPLSIAERMMQKMGYKPGQGLGRDGTGIVQPVQAAP 698

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS--DMAYPTIGHRKIDHLRTMSLCE 163
            E   G++  +  F   D   + + A      LV    D        R    +   +   
Sbjct: 699 REERTGLEAARTAFAQRDVKAWQQHAGEAGIVLVSPAFDWGAFAGSGRGRAEIDMSTEAL 758

Query: 164 AATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           +     L +L  GG  LV+  +  T  T  +L LL   F     VKP+ S   + E F++
Sbjct: 759 SQVAAGLHLLRPGGTLLVRLAETFTRLTASLLHLLCSTFATCRLVKPLTSAPFASECFVV 818

Query: 222 AKGFR 226
            + +R
Sbjct: 819 CRDYR 823


>gi|119910252|ref|XP_001250105.1| PREDICTED: adrift-like [Bos taurus]
 gi|297485425|ref|XP_002694893.1| PREDICTED: adrift-like [Bos taurus]
 gi|296478127|gb|DAA20242.1| adrift-like [Bos taurus]
          Length = 764

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIG--GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I   G   L+ +D ++   G+          L       AL  L
Sbjct: 205 TGDIMTLKYLTGLQNFINSMGTIHLITADGSFDCQGNPGEQEALVSCLHYCEAVTALMTL 264

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL   F +V   KP  S+A + E++++   ++
Sbjct: 265 GNGGSFVLKMFTLFEHCSINLMYLLNCSFDQVHIFKPATSKAGNSEVYVVCLYYK 319


>gi|157114165|ref|XP_001652191.1| hypothetical protein AaeL_AAEL006747 [Aedes aegypti]
 gi|108877425|gb|EAT41650.1| conserved hypothetical protein [Aedes aegypti]
          Length = 703

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKF---FKFDFLDLDSWEFIRQAIGGNP 136
            W                ++A D   +  +    F   +  D +  ++   I +     P
Sbjct: 180 RWFANTLNPYYEGNCLGNMIADDRFILHTMDSWCFGADYTGDIMRKENLGEIVRRSKDFP 239

Query: 137 --DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDI 192
             +LV +D +   +   +        L  A    AL++L   G F++K F     ++ D+
Sbjct: 240 MINLVTADGSIDCLDVPEAQEEHVSKLHLAEAVTALKILTTDGCFILKMFTFFEHSSVDL 299

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           L LL   F+++   KP  S+  + E++++AK FRK
Sbjct: 300 LYLLYVCFRELHVFKPATSKPGNSEVYVIAKYFRK 334


>gi|194332651|ref|NP_001123814.1| FtsJ methyltransferase domain containing 2 [Xenopus (Silurana)
           tropicalis]
 gi|189442295|gb|AAI67621.1| LOC100170565 protein [Xenopus (Silurana) tropicalis]
          Length = 503

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGVK-------------FFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 276 DVCAGPGGFSEYVLWRKKWHTKGFGMTLKGPNDFKLEDFYAAPSELFEPYYGEGGVDGDG 335

Query: 118 DFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  I           +++D  +   G   I  + +  L        L +
Sbjct: 336 DVTRPENITAFRNFILDNTEHKGVHFMMADGGFSVEGQENIQEILSKQLLLCQFLVGLSV 395

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +  GG F+ KTF      +  ++ LL   F+++   KP+ SR  + E +++ +G ++
Sbjct: 396 VRTGGHFICKTFDLFTPFSVGLIYLLYCCFERICLFKPLTSRPANSERYVVCRGLKE 452


>gi|326927123|ref|XP_003209744.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           [Meleagris gallopavo]
          Length = 763

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  +       LV +D ++   G+          L    T  AL +L
Sbjct: 207 TGDVMSLKHLTGLQNFVSNMATIHLVTADGSFDCQGNPGEQEALVSPLHYCETVTALMIL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             GG F++K F      + ++L LL   F++V   KP  S+A + E +++   +
Sbjct: 267 GAGGSFVLKMFTLFEHCSTNLLFLLNCCFEEVHVFKPATSKAGNSEAYVICLRY 320


>gi|50753649|ref|XP_425111.1| PREDICTED: similar to FLJ11171 protein [Gallus gallus]
          Length = 763

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  +       LV +D ++   G+          L    T  AL +L
Sbjct: 207 TGDVMSLKHLTGLQNFVSNMATVHLVTADGSFDCQGNPGEQEALVSPLHYCETVTALMIL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             GG F++K F      + ++L LL   F++V   KP  S+A + E +++   +
Sbjct: 267 GAGGSFVLKMFTLFEHCSTNLLFLLNCCFEEVHVFKPATSKAGNSEAYVICLRY 320


>gi|215765591|dbj|BAG87288.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 136

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 28/118 (23%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE------------------------- 171
            ++LSDM     G    D   +  L   A   A+                          
Sbjct: 19  SVILSDMCPVVSGITTKDAAISCELGMRALSLAVGKMKAKDSDCIAILEKFQSSTEPDPD 78

Query: 172 ---MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +L  GG  ++K  +           K+ F+KV  ++P A+R+ S E+F++ +G R
Sbjct: 79  EDGILRRGGSLVIKFLENEDIPGFGKFCKEKFKKVSLLRPKATRSSSREIFMVCEGLR 136


>gi|327269088|ref|XP_003219327.1| PREDICTED: ftsJ methyltransferase domain-containing protein 1-like
           [Anolis carolinensis]
          Length = 782

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     +++ I       LV SD ++   G+         SL    T  AL  L
Sbjct: 224 TGDVMTLKHLTGLQRFISNMTTVHLVTSDGSFDCQGNPGEQEALVSSLHYCETVTALMTL 283

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            +GG F++K F      + ++L LL   F++V   KP  S+A + E++++  
Sbjct: 284 GLGGSFVLKMFTLFEHCSVNLLFLLNCSFEEVHVFKPATSKAGNSEVYVVCL 335


>gi|170052241|ref|XP_001862132.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167873157|gb|EDS36540.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 556

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDIL 193
            +LV +D +   +   +        L  A    AL+ML  GG F++K F      + D+L
Sbjct: 28  VNLVTADGSIDCLDVPESQEEHVAPLHLAEAVTALKMLTRGGSFILKMFTMFEHTSVDLL 87

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            LL   F ++   KP  S+  + E++++AKG+R+
Sbjct: 88  YLLYVCFDELNVFKPCTSKPGNSEVYVIAKGYRR 121


>gi|294948258|ref|XP_002785673.1| hypothetical protein Pmar_PMAR025421 [Perkinsus marinus ATCC 50983]
 gi|294954903|ref|XP_002788352.1| hypothetical protein Pmar_PMAR026738 [Perkinsus marinus ATCC 50983]
 gi|239899696|gb|EER17469.1| hypothetical protein Pmar_PMAR025421 [Perkinsus marinus ATCC 50983]
 gi|239903664|gb|EER20148.1| hypothetical protein Pmar_PMAR026738 [Perkinsus marinus ATCC 50983]
          Length = 749

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
           A G    +V +D +              + +       A+ +L+ GG F++K +      
Sbjct: 211 ATGEKCHVVTADGSMDVQYDPNKQESLCLPIIFRELLLAIGLLHPGGTFVMKAYSLLDDA 270

Query: 191 DI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +  L L    F  +  VKPVAS+  + E + +  GFR
Sbjct: 271 TVAALSLAAFMFDTIEVVKPVASKEANSETYWVCLGFR 308


>gi|126309943|ref|XP_001379203.1| PREDICTED: similar to KIAA0082 [Monodelphis domestica]
          Length = 1414

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 36/183 (19%)

Query: 73   DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPI--------------------- 109
            D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 854  DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYAASSELFEPYYGDGGIDGDG 913

Query: 110  ----LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
                 G      +F+  ++              +++D  +       +  + +  L    
Sbjct: 914  DVTRPGNITAFRNFILDNTDRK-------GVHFMMADGGFSVEKQENLQEILSKQLLLCQ 966

Query: 166  TFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
                L ++  GG F+ KTF      +  ++ LL   F++V   KPV SR  + E +++ K
Sbjct: 967  FLTGLSVIRTGGHFICKTFDLFTPFSVGLIYLLYTCFERVSLFKPVTSRPANSERYVVCK 1026

Query: 224  GFR 226
              +
Sbjct: 1027 SLK 1029


>gi|73972753|ref|XP_864751.1| PREDICTED: similar to CG6379-PA isoform 3 [Canis familiaris]
          Length = 880

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 22/167 (13%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILD-----------MEPILGVKFFK--F 117
           D+ + PG +S+     +   +      +   +               EP  G    +   
Sbjct: 713 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGRDMKEEDG 772

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 773 DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSV 832

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
           +  GG F+ KTF      +  ++ LL   F++V   KP+ SR  + E
Sbjct: 833 VRTGGHFICKTFDLFTPFSVGLIYLLYCCFERVCLFKPITSRPANSE 879


>gi|198416583|ref|XP_002121479.1| PREDICTED: similar to Uncharacterized protein FLJ11171 [Ciona
           intestinalis]
          Length = 768

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           FK +F+D  S     +       LV +D +                L       AL++L 
Sbjct: 194 FKPEFMDSLSAHCHNEFDDATIGLVTADGSLNCADKPGEQETVVAPLHHVEMLDALQLLC 253

Query: 175 IGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            GG F++K F     +   I+ LL   F++V  +KP  S+A + E++++ + +
Sbjct: 254 SGGTFVMKMFTLFEVHSASIMYLLCCLFEEVSVIKPATSKAGNSEVYVVCRNY 306


>gi|281210651|gb|EFA84817.1| D111/G-patch domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 763

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 42/218 (19%)

Query: 50  RSAYKLLQINEKHQIL--QSNRR---IVDLGSSPGSWSQVA----------------ARI 88
           R+A K+  +++   ++  + N+      D+ + PG +++                   + 
Sbjct: 332 RAAVKMANLDKIATLIEIKPNQDKFYFADVCAGPGGFTEYTLWRMVGKGIPVENKEQRKR 391

Query: 89  TGSNANNTRVVAIDILDMEPILG-----------VKFFKFDFLDLDSWEFIRQAIG---- 133
             +      +       ++               V +   D  D+ + + IR        
Sbjct: 392 CKTKGWGFTLKGECDWKLDKFTDDSGLKIGDNFVVDYGPADDGDIQNEQNIRHFTQMVLK 451

Query: 134 ----GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT- 188
                  +L ++D    T G           L         E+L++GG+F+ K F   T 
Sbjct: 452 GTNQKGVNLFMADGGISTEGEELNQESILGHLILCQFLTMFEILSLGGNFVCKIFDTFTP 511

Query: 189 -TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            T  +L ++ KHF+    VKP  SR  + E +++AK  
Sbjct: 512 FTVGLLYIIFKHFESFTIVKPFTSRPLNSERYVIAKNL 549


>gi|197098086|ref|NP_001125622.1| ftsJ methyltransferase domain-containing protein 1 [Pongo abelii]
 gi|75041951|sp|Q5RAY7|FTSJ1_PONAB RecName: Full=FtsJ methyltransferase domain-containing protein 1
 gi|55728667|emb|CAH91073.1| hypothetical protein [Pongo abelii]
          Length = 769

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+         SL       AL  L
Sbjct: 207 TGDIMTLKFLTGLQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             GG F++K F      + +++ LL     +V   KP  S+A + E++++   ++
Sbjct: 267 GNGGSFVLKMFTMFEHCSINLMYLLNCCLDQVHVFKPATSKAGNSEVYVVCLYYK 321


>gi|149549695|ref|XP_001511215.1| PREDICTED: similar to hCG1812157 [Ornithorhynchus anatinus]
          Length = 853

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 275 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIEGDG 334

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L        L +
Sbjct: 335 DITRPENITAFRNFVLDNTDRKGVHFLMADGGFSVKGQHNLQEILSKQLLLCQFLTGLSL 394

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +  GG F+ K+F      +  +L LL   F++V   KPV SR  + E +++ K  +
Sbjct: 395 VRTGGHFICKSFDLFTPFSVGLLYLLYCCFERVSLFKPVTSRPANSERYVVCKSLK 450


>gi|224003169|ref|XP_002291256.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973032|gb|EED91363.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 599

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--TFQGGTTNDI 192
             +LV++D  +               +  + T  AL +L  GG F++K   F+   T  +
Sbjct: 398 RVNLVVADGGFDAQRDSNDQESIAHCIIVSQTAAALSLLRPGGSFVLKMFGFRENGTRRL 457

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L  L   F+K+  VKP  SR  S E +L+  G+
Sbjct: 458 LRHLYGCFEKMTFVKPTLSRPASAERYLVCWGY 490


>gi|326433933|gb|EGD79503.1| hypothetical protein PTSG_12990 [Salpingoeca sp. ATCC 50818]
          Length = 2112

 Score = 69.2 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFF---KFDFLDLDSWEFI--RQAIGGN 135
           W+ ++        ++  +++ D+  +  +    F      D     + + +  R +  G 
Sbjct: 375 WTGLSLNPYYEYNDHIEMISSDLFILHTLNNWCFGADDTGDITRGQNVQCLWDRVSKHGP 434

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTNDIL 193
            DL  +D A+    +       T  L        L  L+ GG  ++K F     +T  ++
Sbjct: 435 VDLFTADGAFDVSANPGEQEALTSHLHFCEAVAGLGCLSPGGAIVLKLFTACERSTAALI 494

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L+  HF +    KP  S+A + E +L+AKGFR
Sbjct: 495 YLVGCHFDETYICKPATSKAANSETYLVAKGFR 527


>gi|224064131|ref|XP_002187731.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 764

 Score = 68.8 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 32/208 (15%)

Query: 50  RSAYKLLQINEKHQILQSNR------RIVDLGSSPGSWSQVAARITGSN--ANNTRVVAI 101
           ++  K  +I     +L            V L  +PG++         S+    +   VA 
Sbjct: 113 QAWCKFHEILCSFSLLPEEALQDGELNSVHLCEAPGAFIASLNHFLKSHHVPCHWNWVAN 172

Query: 102 DILDMEPILGVKFF--------------------KFDFLDLDSWEFIRQAIGG--NPDLV 139
            +        +                         D + L     ++  +       LV
Sbjct: 173 TLNPYHEANDILMMIMDDRLIANTLPWWYFGPDNTGDVMTLRHLTGLQSFVSSMTTVHLV 232

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLK 197
            +D ++   G+          L    T  AL +L  GG F++K F      + ++L LL 
Sbjct: 233 TADGSFDCQGNPGEQEALVSPLHYCETVTALMILGTGGSFVLKMFTLFEHCSINLLFLLN 292

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
             F++V   KP  S+A + E +++   +
Sbjct: 293 CSFEEVHVFKPATSKAGNSEAYVVCLRY 320


>gi|328874897|gb|EGG23262.1| D111/G-patch domain-containing protein [Dictyostelium fasciculatum]
          Length = 776

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 51/225 (22%)

Query: 50  RSAYKLLQINEKHQILQSNRRI--VDLGSSPGSWSQVA----ARITGSNANNTRVVAIDI 103
           R+A K+  +++  Q+    ++I   D+ + PG +++       +  G+      +     
Sbjct: 309 RAALKMANLDQLAQVSMPGKKIYFADVCAGPGGFTEYLLYRKVKEGGARGFGFTLEGDCD 368

Query: 104 LDMEPI--------------LGVKF----------------FKFDFL---DLDSWE---- 126
             ++                 G  F                F  D+    D D  +    
Sbjct: 369 WKLDNFTDDSHIKFTANPASPGRVFREHSRNYVNPADTNWNFMIDYGADNDGDVLKSKNI 428

Query: 127 ------FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                  +++  G   DL ++D    T G+          L         E L  GG+F+
Sbjct: 429 KHFSNLVLKRTDGKRLDLFMADGGVSTDGNENNQEFLLQHLILCQFLMMFETLGEGGNFV 488

Query: 181 VKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
            K F      T  ++ L+   F     +KP  SR  + E +++AK
Sbjct: 489 CKIFDTFNPFTIGLMYLVYLQFDSFSIIKPYTSRPLNSERYVVAK 533


>gi|195383788|ref|XP_002050607.1| GJ22245 [Drosophila virilis]
 gi|194145404|gb|EDW61800.1| GJ22245 [Drosophila virilis]
          Length = 702

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 51  SAYKLLQINEKHQIL-QSNRRIVDLGSSPGS---------------------WSQVAARI 88
           +  K+ +   +  ++ Q     + L  +PG+                     W       
Sbjct: 98  AWCKIFECLHRFPLVTQPELNSLHLCEAPGAFVAALNHYLHSVYKQDEIKWCWRSTTLNP 157

Query: 89  TGSNANNTRVVAIDILDMEPILG---VKFFKFDFLDLDSWEFIRQAIGGN----PDLVLS 141
                    ++  D      +      K F  + LD+ + E + +    +      L+ +
Sbjct: 158 YYEGNALNEMITDDRFIFHTLDNWLFHKDFTGNLLDVANIEHMTERCANDFPAGVQLITA 217

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKH 199
           D +                L  A    AL +L+  G+F++K F      +  ++ +L   
Sbjct: 218 DGSIDCSAQPDCQEEIVARLLFAEILSALSILSACGNFVIKMFTLFEACSVSVMYMLNCV 277

Query: 200 FQKVIHVKPVASRAESVEMFLLAKGFRK 227
           FQ+V   KP  S+  + E++++   ++K
Sbjct: 278 FQRVHIYKPATSKRGNSEVYVICLNYQK 305


>gi|48843539|ref|YP_025112.1| methyltransferase 1 [Neodiprion sertifer NPV]
 gi|37626224|gb|AAQ96382.1| methyltransferase 1 [Neodiprion sertifer NPV]
          Length = 437

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 19/170 (11%)

Query: 73  DLGSSPGSWSQ---VAARITGSNANNTRVVAID--------------ILDMEPILGVKFF 115
           D+ + PG +S+      +        T     D                   P+     +
Sbjct: 184 DVCAGPGGFSEYMLWRKKWNIKGYGMTLREKNDFQLNRFYDNFSETLHPYYGPLNDGNIY 243

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                       ++   G     +++D  +   G   +  + +  +       AL ++ I
Sbjct: 244 NSQNQKGFCEMIMKDTEGKGVHFMMADGGFSVEGQENMQEMLSKKMYLCQCLIALMIIRI 303

Query: 176 GGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           GG  ++K F      +  ++ L+ + F ++   KP +SR  + E +L+  
Sbjct: 304 GGHCVIKFFDIFTPFSAGLVYLMYRSFNRICIFKPHSSRPANSERYLVCL 353


>gi|330797403|ref|XP_003286750.1| hypothetical protein DICPUDRAFT_150730 [Dictyostelium purpureum]
 gi|325083268|gb|EGC36725.1| hypothetical protein DICPUDRAFT_150730 [Dictyostelium purpureum]
          Length = 737

 Score = 68.0 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 12/178 (6%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KLL+  +      S   +++L      +          N        I I + +   G+ 
Sbjct: 263 KLLEQQD-----NSGNGVLELDDIVKGFGFTIRGKCDWNIERFSK-QIPIHNFKKEYGLD 316

Query: 114 FFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
                    +   F         G    L ++D    T G      +    L        
Sbjct: 317 GTGNILFSANIKNFSNNIFEYTNGIGLHLFMADGGVSTEGKENQQEILLAQLILCQILTM 376

Query: 170 LEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            E L  GG F+ K F      T  ++ L+ +HF+     KP  SR  + E +++AK +
Sbjct: 377 FETLGKGGSFVCKIFDTYTPFTIGLIYLVYQHFETFSICKPYTSRPLNSERYIIAKNY 434


>gi|218185452|gb|EEC67879.1| hypothetical protein OsI_35517 [Oryza sativa Indica Group]
          Length = 152

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 52  AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG 111
           A+KLLQ++ + + L +   ++DL ++PG W QVA       A    V      D+ PI G
Sbjct: 2   AFKLLQLDARFRFLPTALAVLDLCAAPGGWVQVAVNHAPVGAFVVSV------DLVPIRG 55

Query: 112 VKFFKFDFLDLDSWEF 127
                 D         
Sbjct: 56  AHSLTEDITTTKCHAA 71


>gi|126305175|ref|XP_001375930.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 814

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 116 KFDFLDLDSWEFIRQAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D + L     ++  I       LV +D ++   G+          L       AL  L
Sbjct: 207 TGDIMTLKHLTGLQHFISNMSTVHLVTADGSFDCQGNPGEQEALVSPLHYCEVVTALMTL 266

Query: 174 NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             GG F++K F      + +++ LL   F+++   KP  S+A + E++++   +
Sbjct: 267 GNGGSFVLKMFTLFEHCSINLMYLLNCSFEEIHVFKPATSKAGNSEVYVVCLYY 320


>gi|326433791|gb|EGD79361.1| hypothetical protein PTSG_09772 [Salpingoeca sp. ATCC 50818]
          Length = 2151

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 39/214 (18%)

Query: 51  SAYKLLQINEKHQIL--QSNRRIVDL--GSSPGSWS----------QVAARITGSNANNT 96
           +  K+ ++ E  Q+L    + R+  +    +PG +           +   +      +  
Sbjct: 250 AWAKMYELLEHFQLLDVSRDDRVASVHACEAPGGFITATNHFLRTRRHIPKADDPARDQW 309

Query: 97  RVVAIDILDM----EPILGVK---FF-------------KFDFLDLDSWEFI---RQAIG 133
           R +   +       +P   V+   F                D     +   +    +A+ 
Sbjct: 310 RWIGNSLNPYHEQNDPTAMVESDDFISATLPRWYFGADDTGDIRHRANISGLWARARALD 369

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTND 191
               L  +D +           +    L        L  L+ GG  ++K F      T  
Sbjct: 370 APVLLFTADGSVDCQHDPNEQEMIVAQLHYCEAVAGLGCLDQGGAMVLKMFTLFEHPTIA 429

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +L LL+  F +V   KP  SRA + E +++AKGF
Sbjct: 430 LLYLLRSLFDEVWVTKPACSRASNAETYIVAKGF 463


>gi|21740261|emb|CAD39141.1| hypothetical protein [Homo sapiens]
          Length = 691

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           K F+      +L + ++ F++V   KP ASR ES E+F++ +GF
Sbjct: 1   KVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGF 44


>gi|159487565|ref|XP_001701793.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158281012|gb|EDP06768.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 300

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 2/106 (1%)

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +       A      LV +D A  T        L   SL       AL ML  GG  + K
Sbjct: 173 EVRRRCAAAGVPGAMLVTADGAIDTSMVPAAQELVNASLHFTEIVAALGMLAPGGALVWK 232

Query: 183 TFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            F       +  L L+   F+ V   KP  S+  + E++++ +GFR
Sbjct: 233 GFTLFEHTSLCTLHLVGCLFESVSVCKPCTSKPCNSEVYVVGRGFR 278


>gi|256070532|ref|XP_002571596.1| hypothetical protein [Schistosoma mansoni]
 gi|238656741|emb|CAZ27826.1| expressed protein [Schistosoma mansoni]
          Length = 858

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 117 FDFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            D     +       IG +       ++++D  +       +  + +  L       AL 
Sbjct: 483 GDVTKWSNLASFASFIGRSTNNAGVHILMADGGFDVSSQYNLQEVMSKQLYLCQCLCALI 542

Query: 172 MLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMF 219
            L  GG FL K F   T    DI+ ++   F+++  +KPV SR  + E F
Sbjct: 543 NLRPGGHFLTKLFDTFTEFTIDIIYIMGYLFEEIYIIKPVTSRPANSERF 592


>gi|313229008|emb|CBY18160.1| unnamed protein product [Oikopleura dioica]
          Length = 351

 Score = 66.1 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 2/147 (1%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
           W           ++   V+ +D L +E      F   +  ++ ++  +    G    LV 
Sbjct: 162 WYAATLNPHHEESDPGAVIRVDTLILEFPDRWVFGTDNTGNIFNFGSLASLKGKQFHLVT 221

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKK 198
           +D         +     +  L  A        L   G+ L+K F     +T  IL     
Sbjct: 222 ADGGVDCSADPEFQEQNSADLKAAEYKGICYKLKPKGNALLKLFCCCHESTLKILESAAS 281

Query: 199 HFQKVIHVKPVASRAESVEMFLLAKGF 225
            F+KV  VKP +S+A + E++L+  G+
Sbjct: 282 SFRKVELVKPASSKAGNSELYLVMMGY 308


>gi|260787461|ref|XP_002588771.1| hypothetical protein BRAFLDRAFT_125627 [Branchiostoma floridae]
 gi|229273941|gb|EEN44782.1| hypothetical protein BRAFLDRAFT_125627 [Branchiostoma floridae]
          Length = 805

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG--GTTND 191
              ++V +D +     +          L       AL++L  GG  +VK F     ++  
Sbjct: 406 HYCEVVTADGSIDCQKNPGEQESIVSQLHYCEVVSALQLLGEGGALVVKKFTMLEPSSAC 465

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           ++ LL   FQ+V   KPV S++ + E++++  G+
Sbjct: 466 LMYLLNCAFQEVHVFKPVTSKSGNSEVYVVCVGY 499


>gi|47087401|ref|NP_998598.1| ftsJ methyltransferase domain-containing protein 1 [Danio rerio]
 gi|82188695|sp|Q7ZVS8|FTSJ1_DANRE RecName: Full=FtsJ methyltransferase domain-containing protein 1
 gi|28278354|gb|AAH45425.1| Zgc:55686 [Danio rerio]
          Length = 743

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 34/210 (16%)

Query: 50  RSAYKLLQINEKHQILQSNR------RIVDLGSSPG-------------------SWSQV 84
           ++  K  +I    Q+L  +         + L  +PG                   +W   
Sbjct: 117 QAWAKFYEILGTFQLLPDSALKTGELNSIHLCEAPGAFISALNHFLKTSSLHCDWNWIAN 176

Query: 85  AARITGSNANNTRVVAIDILDMEPIL----GVKFFKFDFLDLDSWEFIRQAIGG--NPDL 138
                         +  D L +  +     G      D +       + + +    + DL
Sbjct: 177 TLNPYYEANGRGCTITDDRLIVHTLPWWFFGSDN-TGDIMLQKHLLELPRFVSNMRSVDL 235

Query: 139 VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND--ILCLL 196
           V +D ++   G           L       AL +L  GG F++K F     +   +L LL
Sbjct: 236 VTADGSFDCQGDPGEQERLVAPLQHCEAICALLLLGTGGSFVLKMFTLFEHSSVCLLYLL 295

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              F+ V   KP  S++ + E++++   ++
Sbjct: 296 ACCFRSVNIFKPGTSKSGNSELYIVCLDYQ 325


>gi|86371384|gb|ABC94784.1| non-structural polyprotein [Salmon pancreas disease virus]
          Length = 2569

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +   +      V  + 
Sbjct: 1185 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVKKGKT------VTCVS 1234

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    G      D         +     G  DLV  D A P   H          L 
Sbjct: 1235 EQWDSKPRGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 1287

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1288 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 1347


>gi|51342569|gb|AAU01399.1| non-structural polyprotein [Norwegian salmonid alphavirus]
          Length = 2584

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +   +      V  + 
Sbjct: 1200 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVKKGKT------VTCVS 1249

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    G      D         +     G  DLV  D A P   H          L 
Sbjct: 1250 EQWDSKPRGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 1302

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1303 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 1362


>gi|51342540|gb|AAU01395.1| non-structural polyprotein [Norwegian salmonid alphavirus]
          Length = 2583

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +   +      V  + 
Sbjct: 1199 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVKKGKT------VTCVS 1248

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    G      D         +     G  DLV  D A P   H          L 
Sbjct: 1249 EQWDSKPRGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 1301

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1302 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 1361


>gi|51342581|gb|AAU01401.1| non-structural polyprotein [Norwegian salmonid alphavirus]
          Length = 2581

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +   +      V  + 
Sbjct: 1197 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVKKGKT------VTCVS 1246

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    G      D         +     G  DLV  D A P   H          L 
Sbjct: 1247 EQWDSKPRGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 1299

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1300 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 1359


>gi|51342553|gb|AAU01397.1| non-structural polyprotein [Norwegian salmonid alphavirus]
          Length = 2569

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +   +      V  + 
Sbjct: 1185 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVKKGKT------VTCVS 1234

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    G      D         +     G  DLV  D A P   H          L 
Sbjct: 1235 EQWDSKPRGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 1287

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1288 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 1347


>gi|146277080|ref|YP_001167239.1| hypothetical protein Rsph17025_1033 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555321|gb|ABP69934.1| hypothetical protein Rsph17025_1033 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 57

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           + K   GG  N++  LLKK+F KV +VKP ASRA+S E F++A GFR
Sbjct: 1   MAKVLAGGAENELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFR 47


>gi|324502280|gb|ADY41003.1| Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Ascaris
           suum]
          Length = 979

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 28/177 (15%)

Query: 73  DLGSSPGSWSQVAARITG--------------SNANNTRVVAIDILDMEPILGVKFFKFD 118
           D+ + PG +++      G               +    R  A      EP  G      D
Sbjct: 355 DVCAGPGGFTEYVLWRKGFYNAKGFGFTLAGKDDFKLERFTAASPEYFEPYYGKHG-DGD 413

Query: 119 FLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            +  D+   + + +         DL+++D  +   G   I  + +  L       AL ++
Sbjct: 414 VMKPDNIISLEEVVMKGTNNVGVDLMMADGGFSVEGKENIQEILSKRLYLCQFLVALSVV 473

Query: 174 NI------GGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
                   GG F  K F      +  ++ L+   F+++   KP  SR  + E +++ 
Sbjct: 474 RPASASRVGGVFFCKLFDIFTPFSVGLVYLMYIAFKRISLHKPNTSRPANSERYIIC 530


>gi|37183431|gb|AAQ89602.1| FtsJ [Histophilus somni]
 gi|40804992|gb|AAR91753.1| FtsJ [Histophilus somni]
          Length = 50

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 17 VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
          +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  ++ +
Sbjct: 1  MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDRLFK 50


>gi|154346754|ref|XP_001569314.1| ensangp00000010174-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|308197110|sp|A4HQI9|MTR1_LEIBR RecName: Full=Cap-specific mRNA
           (nucleoside-2'-O-)-methyltransferase 1; AltName:
           Full=Cap1 2'O-ribose methyltransferase 1; Short=MTr1
 gi|134066656|emb|CAM44455.1| putative methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 398

 Score = 64.5 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 71/209 (33%), Gaps = 33/209 (15%)

Query: 50  RSAYKLLQINEKHQI-------------LQSNR-RIVDLGSSPGSWSQVAAR-------- 87
           R+ +KLL+  E   +              +       D+   PG++SQ   +        
Sbjct: 89  RAGHKLLESMESTGVWMELSKLLCGKSRKRPRDFAFADVCGGPGAFSQALFKAGRKQGWR 148

Query: 88  -ITGSNANNTRVVAID---ILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGGNPDLVL 140
            + G       V  +D    L   P     +      D   L + + +       P  ++
Sbjct: 149 HLHGYGMTLAGVSGLDWYNSLLNSPQFTCTYGLDGTGDIFKLSNIDCLVSITKAAPMFLV 208

Query: 141 SDMAYPTIGHRKIDHLRTMS--LCEAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLL 196
                 ++     ++  T+S  +       AL++L  GG  ++K F      +  ++ L 
Sbjct: 209 VADGGFSVDFSVANYQETISSRIMYGQWLAALKLLRKGGCCVLKLFDTFSPLSRAVVYLS 268

Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              + +V   KP  SR  + E +L+   F
Sbjct: 269 CFLYSRVHVAKPRHSRVVNSERYLVCVDF 297


>gi|170586496|ref|XP_001898015.1| FtsJ-like methyltransferase family protein [Brugia malayi]
 gi|158594410|gb|EDP32994.1| FtsJ-like methyltransferase family protein [Brugia malayi]
          Length = 532

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 117 FDFLDLDSWEFIRQAIG--GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            D L   + E+I       G   L+ +D +     +          L +     +L +L 
Sbjct: 159 GDILKW-TNEYINDIAKKVGKFSLITADGSVYCQDNPAEQERIIFPLLQKEIDISLSLLQ 217

Query: 175 IGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             G F+VK +      T  +L  L   F +V  +KP  S+  + E++LL   +
Sbjct: 218 TNGTFIVKMYTAFLNDTVTLLNRLLMCFHEVHVIKPSCSKPGNSEVYLLCASY 270


>gi|294915723|ref|XP_002778337.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239886610|gb|EER10132.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 520

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 34/190 (17%)

Query: 70  RIVDLGSSPGSWSQVAARITG-------SNANNTRVVAI--------------DILDMEP 108
           R VD+   PG++S++   +             + ++ A               D  D + 
Sbjct: 241 RYVDVCGGPGAFSELVKNLGERENVKTIGKGMSLKIEAAQSKEASCIWYQHLLDSEDFDA 300

Query: 109 ILGVKFFKFDFLDLDSWEFI----RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           + G      +     +   +     +  G    LV+ D  +     +  +HL       +
Sbjct: 301 VWGPDG-DGNVYSPSNLAALEGSVMKMDGRGAHLVMGDGGFEVSTDKDGNHLENYQEVYS 359

Query: 165 ATFFALEMLN------IGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESV 216
           A     E+L        GG  + K F   +T    I+ +  + F+K   VKP  SR  + 
Sbjct: 360 ARIILSEVLTMVRSCCKGGFLVCKLFDTFSTITASIIYVTTRLFEKCYIVKPQRSRVVNS 419

Query: 217 EMFLLAKGFR 226
           E +L+  GF+
Sbjct: 420 ERYLVGVGFK 429


>gi|170068524|ref|XP_001868900.1| cell division protein ftsj [Culex quinquefasciatus]
 gi|167864514|gb|EDS27897.1| cell division protein ftsj [Culex quinquefasciatus]
          Length = 241

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                L+K +  G    +   +++++Q+V  +KP ASRA+S E F+LA+GF
Sbjct: 4   PNASLLMKVWDNGEVPALEKNIQRYYQQVKRIKPRASRADSAENFVLARGF 54


>gi|25121763|ref|NP_740636.1| non structural protein P2 [Salmon pancreas disease virus]
          Length = 859

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 19/180 (10%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +        T     +
Sbjct: 642 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVK-----KGKTVTSVSE 692

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
             D +P  G      D         +     G  DLV  D A P   H          L 
Sbjct: 693 QWDTKP-RGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 744

Query: 163 EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
            +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 745 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTARYFRSVSVEKPVSSRITNVEVFF 804


>gi|21321728|ref|NP_647496.1| non-structural polyprotein [Salmon pancreas disease virus]
 gi|81993851|sp|Q8JJX1|POLN_SPDV RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|21262138|emb|CAC87721.1| non-structural polyprotein [Salmon pancreas disease virus]
          Length = 2601

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++PG  +    +        T     +
Sbjct: 1204 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAAPGGVTDYCVK-----KGKTVTSVSE 1254

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
              D +P  G      D         +     G  DLV  D A P   H          L 
Sbjct: 1255 QWDTKP-RGAVVVTADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHAVLF 1306

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1307 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTARYFRSVSVEKPVSSRITNVEVFF 1366


>gi|85000303|ref|XP_954870.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303016|emb|CAI75394.1| hypothetical protein, conserved [Theileria annulata]
          Length = 1007

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLS---DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
           D L  ++++        + ++  S   D ++          L T  L  A    AL +L 
Sbjct: 232 DILLKETYQNWLLGYDNSGNITKSSTADGSFNCQFDPNNQELLTSPLKFAEVVCALGLLR 291

Query: 175 IGGDFLVKTFQGGTTND--ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +GG F++K F         I+ LL   F+++   KP  SR  + E++++   F
Sbjct: 292 VGGCFIIKMFNLFEEPSMSIIALLSLCFKRLEVYKPFLSREANSEVYVICLDF 344



 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKID-HLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           E +   +  N D +  D+         +   L T  +  A    AL  LN  GD +++ F
Sbjct: 757 EILESNLKRNCDFIFCDLYNNVNYRELLYKELNTKYILVAQLIQALNCLNDNGDLVLRIF 816

Query: 185 QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              T  T  ILC L   F +VI  +P +    S E+F++ K ++
Sbjct: 817 SMFTRFTVGILCCLSTVFDQVILYRPESVVNWSQELFVICKNYK 860


>gi|221481727|gb|EEE20103.1| ribosomal RNA methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 246

 Score = 64.2 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 30 LNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS 67
          L++   D Y +RA+ EG+RARSAYKLLQ++++   L  
Sbjct: 4  LSKDRRDIYYRRAKEEGYRARSAYKLLQLDDELHFLSP 41


>gi|70922686|ref|XP_734470.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507240|emb|CAH84195.1| hypothetical protein PC300900.00.0 [Plasmodium chabaudi chabaudi]
          Length = 176

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 22/87 (25%)

Query: 43  QLEGWRARSAYKLLQINEK---HQILQSNR-------------------RIVDLGSSPGS 80
           +  G+RARS+YKL+QIN+K    ++   +                     IVDL ++PGS
Sbjct: 1   KENGYRARSSYKLIQINDKFEIFKLFNPSNYNNNDIGVVVNKYNDEFCYNIVDLCAAPGS 60

Query: 81  WSQVAARITGSNANNTRVVAIDILDME 107
           WSQV   I   N  N         +M 
Sbjct: 61  WSQVLKNICLYNYYNMLYFINKNNNMN 87


>gi|299116333|emb|CBN76137.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 760

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 116 KFDFLDLDSW----EFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
             D  D  +     E IR + G    DLV++D  +               L  A    AL
Sbjct: 419 TGDLTDEANIQGFVEAIRTSTGEKYLDLVVADGGFGAARDALQQERLLSPLVHAEALTAL 478

Query: 171 EMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +L   G F+ K F+    +T  +L LL + F+++  VKP+ASR  S E +L+  GF
Sbjct: 479 LLLREEGSFVCKLFECWTESTAALLYLLHRKFRRIAIVKPIASRPASGERYLVCTGF 535


>gi|167519316|ref|XP_001743998.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777960|gb|EDQ91576.1| predicted protein [Monosiga brevicollis MX1]
          Length = 181

 Score = 62.2 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-----GN 135
           W  +       + N   +V  D    + I    F   D  DL   + +R         G 
Sbjct: 34  WVGMTLNPHYEDNNPVAMVDSDAWICDTIEHWDFGADDSGDLMQADNVRSLWARVAEIGK 93

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDIL 193
            DL   D +             T  L        L  L  GG  ++KTF      TN ++
Sbjct: 94  VDLFTGDGSVDCQHDPNEQENITAMLHYCEAVAGLGCLRRGGAMVLKTFTFFEACTNQLV 153

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLL 221
            LL  HF +V   KP  SRA + E +L+
Sbjct: 154 YLLGVHFDEVWISKPACSRASNAETYLV 181


>gi|313231253|emb|CBY08368.1| unnamed protein product [Oikopleura dioica]
          Length = 220

 Score = 62.2 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                N +    V+ D+     + G +    D  + ++ + I+       DLV+SD    
Sbjct: 84  EKENKNESGGSCVSCDLRPFRHVNGARQVIGDIFEKETLDQIQNE-QREFDLVVSDAHPG 142

Query: 147 TIGHRKIDHLRTMSLCEAAT-FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
                K     +  L +        ++L+ GG FL K         ++ L+K+HFQ V
Sbjct: 143 ASQDPKQTIYSSTQLSQRIIEDVLPQLLSPGGAFLTKALS----QKLVSLMKQHFQHV 196


>gi|195999168|ref|XP_002109452.1| hypothetical protein TRIADDRAFT_53500 [Trichoplax adhaerens]
 gi|190587576|gb|EDV27618.1| hypothetical protein TRIADDRAFT_53500 [Trichoplax adhaerens]
          Length = 794

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK---FDFLDLDSWEFIRQAIGG 134
           P  W  +          +   +  + L  + +    F +    + L   +  F+ +++  
Sbjct: 159 PWQWLAMTLNPYYEGNKDGSTITDNRLISKTLSHWNFGRDNSGNILHRHNMTFLVESLSQ 218

Query: 135 NP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND- 191
            P   LV +D +                +    T  AL +L   G +++K F        
Sbjct: 219 WPSIRLVTADGSIDCSDRPGQQEAIVSPILYCETLTALRILTKDGVYVLKMFTSFQHRSI 278

Query: 192 -ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            ++ LL   FQ+V  +KP  S++ + E++++  G+
Sbjct: 279 CLIYLLLNVFQEVKAIKPSCSKSGNSEVYIICIGY 313


>gi|190349096|gb|EDK41687.2| hypothetical protein PGUG_05786 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 351

 Score = 61.5 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 77/257 (29%), Gaps = 91/257 (35%)

Query: 54  KLLQINEKHQILQSN-RRIVDLGSSPGSWSQVA-ARITGSNA-------NNTRVVAIDIL 104
           KL  ++ + ++   +   ++D+G  PG+WSQ A  R+   +        +   ++  D+L
Sbjct: 88  KLYHLDNQFKLFNPSINTVLDVGFVPGNWSQFAKFRLCQVHGLEESQFSSKCHILGFDML 147

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAI-------------------------------- 132
             +   GV   + D     S   I+                                   
Sbjct: 148 FGQGPFGVSTMQGDIYSNSSHIGIQNHFREQYVQRLQRNKSAEPEAYFAKEQQQVELVSE 207

Query: 133 ----------GGNPDLVLSDMAYPTIGHRKIDHLRT------------------------ 158
                        P L++SD+A P +  R   +                           
Sbjct: 208 LQKLNINSDSDWKPQLMMSDLAAPFLQDRGFFNNTQTRPYMRTGAHANLGRPSKGDLKSY 267

Query: 159 MSLCEAATFFALEMLNIGGDF---LVKTFQGGTT-NDILCLLKKHFQKVIHVKPVASRAE 214
           + L +AA   A   L   G     L K F        +   L + F++V    P AS  E
Sbjct: 268 LDLADAALVLACSTLAKKGSLLLRLAKVFDNDPELALLHQRLGRVFKQVT---PWAS--E 322

Query: 215 SV-------EMFLLAKG 224
           S        E F + +G
Sbjct: 323 SAVRQHNIQERFFVCQG 339


>gi|323509753|dbj|BAJ77769.1| cgd7_2570 [Cryptosporidium parvum]
          Length = 522

 Score = 61.5 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 117 FDFLDLDSWEFI------RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            D   + + ++I              DLV +D +     +       T S+    T  AL
Sbjct: 209 GDITKVCNIDYIWQKTSKNTKNCWLADLVTADGSLDIQYNPNEQEKLTSSIQYCETVCAL 268

Query: 171 EMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L   G F++K F     TT  I+ LL   FQ V  VKP+ S+  S E++++A  F+
Sbjct: 269 GILRKHGSFIIKCFNILHHTTISIIALLCYCFQNVHIVKPIMSKGGSGEIYIVAMNFQ 326


>gi|323509295|dbj|BAJ77540.1| cgd7_2570 [Cryptosporidium parvum]
          Length = 516

 Score = 61.5 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 117 FDFLDLDSWEFI------RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            D   + + ++I              DLV +D +     +       T S+    T  AL
Sbjct: 209 GDITKVCNIDYIWQKTSKNTKNCWLADLVTADGSLDIQYNPNEQEKLTSSIQYCETVCAL 268

Query: 171 EMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L   G F++K F     TT  I+ LL   FQ V  VKP+ S+  S E++++A  F+
Sbjct: 269 GILRKHGSFIIKCFNILHHTTISIIALLCYCFQNVHIVKPIMSKGGSGEIYIVAMNFQ 326


>gi|66362924|ref|XP_628428.1| adrift-like. FTSJ family RNA methylase [Cryptosporidium parvum Iowa
           II]
 gi|46229458|gb|EAK90276.1| adrift-like. FTSJ family RNA methylase [Cryptosporidium parvum Iowa
           II]
          Length = 1188

 Score = 61.5 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 117 FDFLDLDSWEFI------RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            D   + + ++I              DLV +D +     +       T S+    T  AL
Sbjct: 209 GDITKVCNIDYIWQKTSKNTKNCWLADLVTADGSLDIQYNPNEQEKLTSSIQYCETVCAL 268

Query: 171 EMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L   G F++K F     TT  I+ LL   FQ V  VKP+ S+  S E++++A  F+
Sbjct: 269 GILRKHGSFIIKCFNILHHTTISIIALLCYCFQNVHIVKPIMSKGGSGEIYIVAMNFQ 326


>gi|35187153|gb|AAQ84235.1| FtsJ [Histophilus somni]
          Length = 47

 Score = 61.1 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 17 VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ 63
          +  +    SS  WLN H  DP+VQ+A  +  R+R+ +KL +I +  +
Sbjct: 1  MGKKKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQSDR 47


>gi|294878282|ref|XP_002768337.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239870608|gb|EER01055.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score = 61.1 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILC 194
           D+V +D +  +          T  L  +    AL +L  GG  ++K F     ++  I+ 
Sbjct: 389 DIVTADGSVDSQFDANNQERITTRLHFSELVAALGLLRTGGSLVLKMFTLFEPSSKAIIW 448

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L++  F + I  KP  S+  + E++++  GF
Sbjct: 449 LVRAMFDRCIVCKPEMSKPGNSEVYVVGLGF 479


>gi|294876050|ref|XP_002767527.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239869187|gb|EER00245.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 380

 Score = 61.1 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILC 194
           D+V +D +  +          T  L  +    AL +L  GG  ++K F     ++  I+ 
Sbjct: 246 DIVTADGSVDSQFDANNQERITTRLHFSELVAALGLLRTGGSLVLKMFTLFEPSSKAIIW 305

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           L++  F + I  KP  S+  + E++++  GF
Sbjct: 306 LVRAMFDRCIVCKPEMSKPGNSEVYVVGLGF 336


>gi|209879978|ref|XP_002141429.1| ribosomal RNA large subunit methyltransferase J domain-containing
           protein [Cryptosporidium muris RN66]
 gi|209557035|gb|EEA07080.1| ribosomal RNA large subunit methyltransferase J domain-containing
           protein [Cryptosporidium muris RN66]
          Length = 1170

 Score = 61.1 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 117 FDFLDLDSWEFI------RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            D  + D+  +I              DLV +D +  T  +       T  +        L
Sbjct: 209 GDITNCDNIHYIWSKTSKNTKSCWLADLVTADGSIDTQYNPNEQEQLTSCIQYCEVVCGL 268

Query: 171 EMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L   G  +VK F     TT  +L LL   F +V  VKPV S+  + E++++A  F+
Sbjct: 269 GILRKHGSLIVKCFNIFHHTTISLLALLYYCFNQVHIVKPVMSKGGNSEVYIVALNFQ 326


>gi|90103337|gb|ABD85513.1| hypothetical protein [Ictalurus punctatus]
          Length = 161

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 185 QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +G     +   LK  F  V   KP +SR  S+E F++ + +
Sbjct: 1   RGKDVTLLYSQLKIFFSMVTCAKPXSSRNSSIEAFVVCQNY 41


>gi|238492087|ref|XP_002377280.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220695774|gb|EED52116.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 374

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 51/242 (21%)

Query: 16  KVKNRSCQGSSRDWLNRHIND-PYVQRAQLEG---WRARSAYKLLQINEKHQILQSNRRI 71
           + + R+   SS        N+  +    +  G    ++ +A+K   I+ +HQ       I
Sbjct: 77  RAQRRNADQSSEK------NEIHFYNLMKKIGEELHQSSNAFK---IHSRHQ---GGPTI 124

Query: 72  VDLGSSPGSWSQVAARIT---------------GSNANNTRVVAIDILDME-----PILG 111
           +D   +PG + + A ++                G      R   +D+  ++       +G
Sbjct: 125 LDTCMAPGGFLETALKLNPHSRAVAFSLPASCGGHKIRLPRAFQVDVRHLDVTMLAADMG 184

Query: 112 VKFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMS--LCEAATF 167
           V     D    D+  F+ Q +  G   DLV+ D        R     +  +  L      
Sbjct: 185 VNNVPQD--HPDAHNFLPQQLGQGEAFDLVICDGQVLRTHLRAPYREKVEARRLTVTQLA 242

Query: 168 FALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV---ASRAESVEMFLLA 222
             L+ L  GG  +V     +   + +++    + F  V  +KP    A R+     +L+A
Sbjct: 243 LGLQHLRNGGTMVVLLHKLEAWDSANLIWQFTR-FASVKLIKPKTGHAKRSSF---YLVA 298

Query: 223 KG 224
           K 
Sbjct: 299 KD 300


>gi|156082982|ref|XP_001608975.1| ribosomal RNA large subunit methyltransferase J domain containing
           protein [Babesia bovis T2Bo]
 gi|154796225|gb|EDO05407.1| ribosomal RNA large subunit methyltransferase J domain containing
           protein [Babesia bovis]
          Length = 1005

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--L 193
            D+V +D ++            T  L  +    AL ++ +G  F++K F     + +   
Sbjct: 259 VDIVTADGSFCCQADPNNQETLTAPLKLSEVVCALGLMRVGAIFILKMFTLFEESSLSIF 318

Query: 194 CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +LK  F+ V   KP  S++   E++++  GF
Sbjct: 319 TILKMCFKTVEVYKPHLSKSNGSEVYVVCIGF 350


>gi|312083718|ref|XP_003143979.1| hypothetical protein LOAG_08398 [Loa loa]
 gi|307760856|gb|EFO20090.1| hypothetical protein LOAG_08398 [Loa loa]
          Length = 827

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 47/191 (24%)

Query: 56  LQI-NEKHQILQSNRR---------IVDLGSSPGSWSQVA-------ARITGSNANNTRV 98
           ++I NEK ++    +            D+ + PG +++               +    R 
Sbjct: 260 VEIKNEKWRVATPGKNTDRSSPLFYFADICAGPGGFAEYVLWRKGYYNARGKDDFKLKRF 319

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
            A      EP  G      D    D                            +    + 
Sbjct: 320 TAASPSYFEPYYGKHN-DGDVTKPD----------------------NITSFEEEILSKR 356

Query: 159 MSLC-----EAATFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVAS 211
           + LC      +           GG F+ K F      +  ++ L+   F+++   KP  S
Sbjct: 357 LYLCQFLTGLSVLRVKTRNTVTGGKFVCKLFDIFTPFSVGLIYLMYIVFERISIHKPNTS 416

Query: 212 RAESVEMFLLA 222
           R  + E +++ 
Sbjct: 417 RPANSERYIVC 427


>gi|159108568|ref|XP_001704554.1| Methyltransferase, putative [Giardia lamblia ATCC 50803]
 gi|157432620|gb|EDO76880.1| Methyltransferase, putative [Giardia lamblia ATCC 50803]
          Length = 416

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 45/221 (20%)

Query: 50  RSAYKLLQINEKHQILQSNRRI-------------VDLGSSPGSWSQVAARITGSNANNT 96
           R++ KL+Q+++    + S+  I              DL S+PG WS              
Sbjct: 106 RASDKLIQLDDAVPFVGSSPSISTGTQPEGPDLLFADLCSAPGGWSYTILERFPRARGVA 165

Query: 97  RVVAID-----------------ILDMEPILGVKFFKFDFLDLDSWEFIRQA------IG 133
             ++ D                    ++  LGV        + D+   + Q       + 
Sbjct: 166 MSLSADGGKVGLTWDPRLEPFISSRRLKTTLGVDG-TGSVYNPDNVTLLTQLHAVARELH 224

Query: 134 GNPDLVLSDMAYPTIG---HRKIDHLR---TMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           G   L L+D  +   G    R ++HL+      L  +     L +L   G+ +VK F   
Sbjct: 225 GPYALFLADGGFLIEGPGGRRHVEHLQESIVAKLLYSEVVAGLRLLKHSGNMVVKMFGSC 284

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           T  T+ +L LL   F+ +  VKP  SR  + E +++A+G++
Sbjct: 285 TVLTSHLLYLLLVCFRDLHIVKPGRSRIVNEEKYIVARGYK 325


>gi|159107412|ref|XP_001703986.1| Methyltransferase, putative [Giardia lamblia ATCC 50803]
 gi|157432032|gb|EDO76312.1| Methyltransferase, putative [Giardia lamblia ATCC 50803]
          Length = 416

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 45/221 (20%)

Query: 50  RSAYKLLQINEKHQILQSNRRI-------------VDLGSSPGSWSQVAARITGSNANNT 96
           R++ KL+Q+++    + S+  I              DL S+PG WS              
Sbjct: 106 RASDKLIQLDDAVPFVGSSPSISTGTQPEGPDLLFADLCSAPGGWSYTILERFPRARGVA 165

Query: 97  RVVAID-----------------ILDMEPILGVKFFKFDFLDLDSWEFIRQA------IG 133
             ++ D                    ++  LGV        + D+   + Q       + 
Sbjct: 166 MSLSADGGKVGLTWDPRLEPFISSRRLKTTLGVDG-TGSVYNPDNVTLLTQLHAAVRELH 224

Query: 134 GNPDLVLSDMAYPTIG---HRKIDHLR---TMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           G   L L+D  +   G    R ++HL+      L  +     L +L   G+ +VK F   
Sbjct: 225 GPYALFLADGGFLIEGPGGRRHVEHLQESIVAKLLYSEVVAGLRLLKHSGNMVVKMFGSC 284

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           T  T+ +L LL   FQ +  VKP  SR  + E +++A+G++
Sbjct: 285 TVLTSHLLYLLLVCFQDLHTVKPGRSRIVNEEKYIVARGYK 325


>gi|146412101|ref|XP_001482022.1| hypothetical protein PGUG_05786 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 351

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 76/257 (29%), Gaps = 91/257 (35%)

Query: 54  KLLQINEKHQILQS-NRRIVDLGSSPGSWSQVA-ARITGSNA-------NNTRVVAIDIL 104
           KL  ++ + ++       ++D+G  PG+WSQ A  R+   +        +   ++  D+L
Sbjct: 88  KLYHLDNQFKLFNPLINTVLDVGFVPGNWSQFAKFRLCQVHGLEESQFSSKCHILGFDML 147

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAI-------------------------------- 132
             +   GV   + D     S   I+                                   
Sbjct: 148 FGQGPFGVSTMQGDIYSNSSHIGIQNHFREQYVQRLQRNKSAEPEAYFAKEQQQVELVSE 207

Query: 133 ----------GGNPDLVLSDMAYPTIGHRKIDHLRT------------------------ 158
                        P L++SD+A P +  R   +                           
Sbjct: 208 LQKLNINLDSDWKPQLMMSDLAAPFLQDRGFFNNTQTRPYMRTGAHANLGRPSKGDLKSY 267

Query: 159 MSLCEAATFFALEMLNIGGDF---LVKTFQGGTT-NDILCLLKKHFQKVIHVKPVASRAE 214
           + L +AA   A   L   G     L K F        +   L + F++V    P AS  E
Sbjct: 268 LDLADAALVLACSTLAKKGLLLLRLAKVFDNDPELALLHQRLGRVFKQVT---PWAS--E 322

Query: 215 SV-------EMFLLAKG 224
           S        E F + +G
Sbjct: 323 SAVRQHNIQERFFVCQG 339


>gi|170585923|ref|XP_001897731.1| FtsJ-like methyltransferase family protein [Brugia malayi]
 gi|158594833|gb|EDP33411.1| FtsJ-like methyltransferase family protein [Brugia malayi]
          Length = 902

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 51/193 (26%)

Query: 56  LQI-NEKHQILQSNRRI---------VDLGSSPGSWSQVA-------ARITGSNANNTRV 98
           ++I NEK +I    +            D+ + PG +++               +    R 
Sbjct: 321 VEIKNEKCRIATPGKNAGRLSPLFYFADICAGPGGFTEYVLWRKGYYNARGKDDFKLKRF 380

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
            A      EP  G      D    D                              D + +
Sbjct: 381 TAASPSYFEPYYGKHN-DGDITKPD------------------------NITSFEDEILS 415

Query: 159 MSLCEAATFFALEMLN-------IGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPV 209
             L        L +L         GG F+ K F      +  ++ L+   F+++   KP 
Sbjct: 416 KRLYLCQFLTGLSVLRVKNHDTGSGGKFVCKLFDIFTPFSIGLIYLMYIVFERISIHKPN 475

Query: 210 ASRAESVEMFLLA 222
            SR  + E +++ 
Sbjct: 476 TSRPANSERYIVC 488


>gi|19352424|ref|NP_598184.1| Nonstructural polyprotein [Sleeping disease virus]
 gi|81995495|sp|Q8QL53|POLN_SLDV RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|19171521|emb|CAC87660.1| non-structural polyprotein [Sleeping disease virus]
          Length = 2593

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 19/180 (10%)

Query: 43   QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            Q+  ++ R+A K  ++ ++     S   ++DLG++ G  +    +   +      V  + 
Sbjct: 1203 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAARGGVTDYCVKKGKT------VTCVS 1252

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    G      D         +     G  DLV  D A P   H            
Sbjct: 1253 EQWDSKPRGAVVITADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHARRS 1305

Query: 163  EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
             +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 1306 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 1365


>gi|25121754|ref|NP_740654.1| non structural protein P2 [Sleeping disease virus]
          Length = 857

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 19/180 (10%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           Q+  ++ R+A K  ++ ++     S   ++DLG++ G  +    +   +      V  + 
Sbjct: 640 QVHSFKTRAAVKFAELTKR----VSYNSVLDLGAARGGVTDYCVKKGKT------VTCVS 689

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                   G      D         +     G  DLV  D A P   H            
Sbjct: 690 EQWDSKPRGAVVITADINGP-----LNNL--GIFDLVFCDAAGPRRYHHYAQCEDHARRS 742

Query: 163 EAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
            +A    +E    GG F+VK +      T   +    ++F+ V   KPV+SR  +VE+F 
Sbjct: 743 TSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYFKSVSVEKPVSSRITNVEVFF 802


>gi|294655686|ref|XP_457859.2| DEHA2C04026p [Debaryomyces hansenii CBS767]
 gi|199430524|emb|CAG85904.2| DEHA2C04026p [Debaryomyces hansenii]
          Length = 386

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 48  RARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAA-RITGSNA-------NNTRV 98
           R RS  KL   + +  I  +   +++DLG  PG+WS+ A  R+   +            +
Sbjct: 96  RNRS--KLQDADNEFGIFNAGVTKVLDLGFVPGNWSEFARYRLCQVHGIDEDKFHEKCHI 153

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           +  DIL   P LGV   + +     + + I          + + +    +    +D  + 
Sbjct: 154 LGFDILFGTPPLGVSSMQGNIFSKSAHDLISMHFKDIA--LRNAVEAKNMNDEGMDEFQQ 211

Query: 159 MS 160
             
Sbjct: 212 SY 213


>gi|222632590|gb|EEE64722.1| hypothetical protein OsJ_19578 [Oryza sativa Japonica Group]
          Length = 719

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 115 FKFDFLDLDSWEFIRQAIGGN----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
              D         +R+ +  N     D+VL D +    G    +     SL   A   A 
Sbjct: 33  LTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGAWAQEATAQSSLVIDAVRLAT 92

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKK 198
             L   G F+ K F+    N I+  LK+
Sbjct: 93  MFLAPKGAFITKVFRSQDYNAIMYCLKQ 120


>gi|20093782|ref|NP_613629.1| 23S rRNA methylase [Methanopyrus kandleri AV19]
 gi|19886692|gb|AAM01559.1| Predicted 23S rRNA methylase containing THUMP domain [Methanopyrus
           kandleri AV19]
          Length = 357

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 28/153 (18%)

Query: 39  VQRAQL--EGWR--ARSAYKLLQINEKHQ-ILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           V+R +    G R  +R+  KL ++ ++H  I++    ++DLG++PG WS   AR      
Sbjct: 169 VKRVRKWSPGMRPISRAQLKLRELLKRHPYIVREGSDVIDLGAAPGGWSYELARRVEPGT 228

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDF---LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
               V A+D  D+ P    K  K D    L   + E     I G   LV SD+       
Sbjct: 229 ----VYAVDPGDLHP----KVLKLDNVVHLKKRAEELTEDDIEGRIRLVTSDLNRIHTEA 280

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            ++               A E L  GG F+V+T
Sbjct: 281 TEVT-----------LSVADEFLEPGG-FIVQT 301


>gi|170060913|ref|XP_001866012.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167879249|gb|EDS42632.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 719

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 126 EFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           +++    G +   L + D  +    + +    + + L       A+ ++  GG+ ++K F
Sbjct: 219 DYVMAHTGQDGVHLFVCDGGFLLKNNCQEVISKQLYLVLVML--AVTVIRPGGNAIIKVF 276

Query: 185 Q--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
                 +  ++ +L + + +V  +KP  SR  + E +++ +
Sbjct: 277 DLYTPFSVGLIFILTRMYARVSILKPCTSRPANSERYVVCQ 317


>gi|253747795|gb|EET02302.1| Methyltransferase, putative [Giardia intestinalis ATCC 50581]
          Length = 420

 Score = 56.1 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 54/227 (23%)

Query: 50  RSAYKLLQINEKHQIL----------------QSNRRIVDLGSSPGSWSQVAARITGSNA 93
           R++ KL+Q+++    +                  +    DL S+PG WS           
Sbjct: 107 RASDKLIQLDDAVPFVGASPSVSSASAQPDSGSPDLLFADLCSAPGGWSYTLLDRFPG-- 164

Query: 94  NNTRVVAIDILDMEPILGVK-------FF-------------KFDFLDLDSWEFIRQA-- 131
              R VA+ +   +   G+        F                   + D+   + Q   
Sbjct: 165 --ARGVAMSLSPGDGTAGLTWDPRLDRFISSGRLKTTLGVDGTGSVYNPDNVSLLAQLQA 222

Query: 132 ----IGGNPDLVLSDMAYP---TIGHRKIDHLR---TMSLCEAATFFALEMLNIGGDFLV 181
               + G  +L L+D  +    + G R ++HL+      L  +     L +L   G+ ++
Sbjct: 223 AAKELPGPYNLFLADGGFLLEGSGGERHVEHLQESIVAKLLYSEVVAGLRLLGRSGNMVI 282

Query: 182 KTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           K F   T  T+ +L LL   F+++  VKP  SR  + E +L+A+G+R
Sbjct: 283 KMFGSCTVLTSHLLYLLLTCFRELHIVKPGRSRIVNEEKYLVARGYR 329


>gi|309811988|ref|ZP_07705754.1| ribosomal RNA large subunit methyltransferase J [Dermacoccus sp.
           Ellin185]
 gi|308434046|gb|EFP57912.1| ribosomal RNA large subunit methyltransferase J [Dermacoccus sp.
           Ellin185]
          Length = 345

 Score = 56.1 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 24/144 (16%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           + A  +   +R+ +KL ++     ++        VDLG+SPG W+++           ++
Sbjct: 178 RLAARKEQVSRAEFKLEEL---FGLIDVPRGDVAVDLGASPGGWTRILRSR-----GFSQ 229

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           V A+D  D++    V           +        G   DL+++DM  P           
Sbjct: 230 VHAVDPADID--ERVMNLGGVEHHKTTAGEFVAKHGERVDLIVNDMRMPP---------- 277

Query: 158 TMSLCEAATFFALEMLNIGGDFLV 181
              L       A +ML  GG  +V
Sbjct: 278 --QLSAHTMLEASDMLRPGGSAIV 299


>gi|251796645|ref|YP_003011376.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp. JDR-2]
 gi|247544271|gb|ACT01290.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp. JDR-2]
          Length = 339

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 43  QLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           + EG  +R+ +KLL+   +  +     R  VD+G++PG W+ +            RV AI
Sbjct: 174 REEGQISRAKFKLLEAEREFGLDYSMFRSAVDIGAAPGGWTSLLLER------GLRVTAI 227

Query: 102 DILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
           D  DM P + G       +L  ++ E   +   G+ DL++ DM+              M 
Sbjct: 228 DPGDMHPSLAGHPALT--YLKRNASEV--KFKPGSFDLLVCDMS-----------WSPMQ 272

Query: 161 LCEAATFFALEMLNIGGDFL--VKTFQGGTTNDILCLLKKHFQKVIHVK 207
           +C        E L      +  +K         I   +K+ F     +K
Sbjct: 273 MCRLVLDL-EETLAPHASAIITIKLMHKKPLQTI-REVKERFSTAFIIK 319


>gi|258568504|ref|XP_002584996.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237906442|gb|EEP80843.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 209

 Score = 55.3 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           G +PGSWSQVA  +T  N    RV+ IDI+  +P  GV   + +FL      ++R+ +
Sbjct: 6   GFAPGSWSQVAVELTHPNG---RVLGIDIIPAQPPKGVSTIQGNFLSPRVQAYVREFL 60



 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 17/102 (16%)

Query: 119 FLDLDSWEFIRQAIG--GNPDLVLSDMAYPTIG-----HRKIDHLRTMSLCEAATFFALE 171
             +    +      G  G  D+VLSDM+ P         R ++      L  +       
Sbjct: 106 ITEEPCVDDTSPMFGNDGTVDVVLSDMSAPWQPTTGFWKRSLNDPYHRMLNTSGLNVRDH 165

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213
                         G     +   L+  FQKV   KP +SR 
Sbjct: 166 S----------GSMGSEDQLLENRLRSLFQKVYREKPDSSRK 197


>gi|229892011|sp|P0C968|VF424_ASFK5 RecName: Full=Probable methyltransferase EP424R; Short=pEP424R
          Length = 424

 Score = 55.3 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILC 194
            L  +D                + L        L  L+ GG+ ++K +      T  ++C
Sbjct: 223 HLYTADGGINVGHDYNKQEELNLKLHFGQALTGLLSLSKGGNMILKHYTLNHAFTLSLIC 282

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +    F+++   KP +SR  + E +++ K 
Sbjct: 283 VFSHFFEELYITKPTSSRPSNSETYIVGKN 312


>gi|325114479|emb|CBZ50035.1| putative ftsJ-like methyltransferase domain-containing protein
            [Neospora caninum Liverpool]
          Length = 2132

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 121  DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID---HLRTMSLCEAATFFALE----ML 173
              D+ +        +  LV++D  +      K           LC       L     +L
Sbjct: 1081 TPDTQDAETYQGVPHVCLVVADGGFHLAIDEKTGRHIENYQELLCARLLLSELLFALMLL 1140

Query: 174  NIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              GG+F+ K F   T  T  ++ ++ + F+    +KP+ SRA + E +L+    ++
Sbjct: 1141 EEGGNFVCKIFDTFTHFTASLVYIVARLFEDCAIIKPIRSRAANSERYLVGLRLKR 1196


>gi|308158282|gb|EFO61037.1| Methyltransferase, putative [Giardia lamblia P15]
          Length = 434

 Score = 54.9 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 45/220 (20%)

Query: 50  RSAYKLLQINE-------------KHQILQSNRRIVDLGSSPGSWSQVAARITG------ 90
           R++ KL+Q+++             K Q    +    DL S+PG WS              
Sbjct: 124 RASDKLIQLDDVVPFVGSSPSISAKTQPEDPDLLFADLCSAPGGWSYTILERFPGARGVA 183

Query: 91  -SNANNTRVVAIDILD----------MEPILGVKFFKFDFLDLDSWEFIRQA------IG 133
            S ++    + +              ++  LGV        + D+   + Q       + 
Sbjct: 184 MSLSSGGGKIGLTWDPRLEPFISSRRLKTTLGVDG-TGSVYNPDNVSLLAQLHAAARELH 242

Query: 134 GNPDLVLSDMAYPT---IGHRKIDHLR---TMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           G   L L+D  +      G R ++HL+      L  +     L +L   G+ ++K F   
Sbjct: 243 GPYALFLADGGFLIEGPSGKRHVEHLQESIVAKLLYSEVVAGLRLLRHSGNMVIKMFGSC 302

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           T  T+ +L LL   F+ +  VKP  SR  + E +++A+G+
Sbjct: 303 TVLTSHLLYLLLACFRDLHIVKPGRSRIVNEEKYIVARGY 342


>gi|308162665|gb|EFO65049.1| Methyltransferase, putative [Giardia lamblia P15]
          Length = 445

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 45/220 (20%)

Query: 50  RSAYKLLQINEKHQIL-------------QSNRRIVDLGSSPGSWS-----------QVA 85
           R++ KL+Q+++    +               +    DL S+PG WS            VA
Sbjct: 135 RASDKLIQLDDAVPFVGSRPSISAKTQPEDPDLLFADLCSAPGGWSYTILERFPGARGVA 194

Query: 86  ARITGSNANNTRVVAIDILDM------EPILGVKFFKFDFLDLDSWEFIRQA------IG 133
             ++             +         +  LGV        + D+   + Q       + 
Sbjct: 195 MSLSSGGGKVGLTWDPRLEPFISSRRLKTTLGVDG-TGSVYNPDNVSLLAQLHAAARELH 253

Query: 134 GNPDLVLSDMAYPT---IGHRKIDHLR---TMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
           G   L L+D  +      G R ++HL+      L  +     L +L   G+ ++K F   
Sbjct: 254 GPYALFLADGGFLIEGPSGKRHVEHLQESIVAKLLYSEVVAGLRLLRHSGNMVIKMFGSC 313

Query: 188 T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           T  T+ +L LL   F+ +  VKP  SR  + E +++A+G+
Sbjct: 314 TVLTSHLLYLLLACFRDLHIVKPGRSRIVNEEKYIVARGY 353


>gi|315646606|ref|ZP_07899724.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus vortex
           V453]
 gi|315278249|gb|EFU41569.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus vortex
           V453]
          Length = 358

 Score = 54.5 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           V+  + EG  +R+ +KLL+  ++  I   S R+ +D+G++PG W+              +
Sbjct: 189 VRFQREEGQISRAKFKLLEAEKQFGIPFDSFRKALDIGAAPGGWTSFLLER------GLQ 242

Query: 98  VVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM--AYPTIGHRKID 154
           V A+D   M P + G K  +   +  ++ +          DL++ DM  +          
Sbjct: 243 VTAVDPAKMHPSLHGHKNLR--VIHKNAADV--SFKEHEFDLLVCDMSWSPKQTAKMVTG 298

Query: 155 HLRTMS 160
            L ++ 
Sbjct: 299 LLYSLQ 304


>gi|21226172|ref|NP_632094.1| putative ribosomal RNA methyltransferase [Methanosarcina mazei Go1]
 gi|20904401|gb|AAM29766.1| putative ribosomal RNA methyltransferase [Methanosarcina mazei Go1]
          Length = 243

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 24/141 (17%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI--TGSNANNTRVVA 100
           Q +G+     +KL  + E+  +L+   R++DLGSS G +   A+ I         +R   
Sbjct: 69  QPQGY-----FKLKYVQEESGVLKPGDRVLDLGSSAGGFLLFASEIADHVKGIEFSRDFR 123

Query: 101 IDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            ++  +      V+    D   +     +++      D++LSDM                
Sbjct: 124 SELGKIAYERENVEIIFGDVFTIP----LKELSEEPVDVILSDMTLEPED---------- 169

Query: 160 SLCEAATFFALEMLNIGGDFL 180
                A    L +L  GG  L
Sbjct: 170 --SIKALSRMLPLLKEGGRLL 188


>gi|73670608|ref|YP_306623.1| FtsJ-like methyltransferase [Methanosarcina barkeri str. Fusaro]
 gi|72397770|gb|AAZ72043.1| FtsJ-like methyltransferase [Methanosarcina barkeri str. Fusaro]
          Length = 236

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG--SNANNTRVVA 100
           Q +G+     +KL  I E+  IL+    ++DLGSS G +   A+ I G       ++   
Sbjct: 56  QPQGY-----FKLKLIQEESGILKPGDEVLDLGSSAGGFLLFASEIVGHIKGIEFSKDFR 110

Query: 101 IDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            ++  +      V+    D   +     +        D++LSDM                
Sbjct: 111 SELGKIAYEKENVEVIFGDVFTIP----LNLLSDEPVDVILSDMTLEPED---------- 156

Query: 160 SLCEAATFFALEMLNIGGDFL 180
                A    L +L  GG  L
Sbjct: 157 --SIKALSRVLPLLKPGGKLL 175


>gi|242213490|ref|XP_002472573.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728367|gb|EED82263.1| predicted protein [Postia placenta Mad-698-R]
          Length = 474

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 54/183 (29%), Gaps = 31/183 (16%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-------LGVKFFKFDF 119
              R +DLG SPG +S    +     A    V   D  D  P+               D 
Sbjct: 112 KVHRFLDLGCSPGGFSSYVLK-HNWGAQGVGVTLPDEEDRIPVQIDSDLLANYDVRYTDV 170

Query: 120 -------LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
                   + D+   I    G      L       +    I   R   L  A        
Sbjct: 171 VAFVARSTETDTPPAILAHDGSPVRYDLVIAGAFPVLQGAIPWWRRTQLVFAQLILIFAN 230

Query: 173 LNIGGDFLVKTFQGGTTNDILC------LLKKHFQKVIHVKP---VASRAESVEMFLLAK 223
           ++ GG  +V       T   L       +L++ F+ V   K     A R      +L+ +
Sbjct: 231 ISKGGSAIVAI----NTKAFLWTVDVIGMLRQCFETVTAHKTGRLHAVRTS---CYLVCR 283

Query: 224 GFR 226
           GFR
Sbjct: 284 GFR 286


>gi|242221051|ref|XP_002476282.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724485|gb|EED78524.1| predicted protein [Postia placenta Mad-698-R]
          Length = 486

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 54/183 (29%), Gaps = 31/183 (16%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-------LGVKFFKFDF 119
              R +DLG SPG +S    +     A    V   D  D  P+               D 
Sbjct: 112 KVHRFLDLGCSPGGFSSYVLK-HNWGAQGVGVTLPDEEDRIPVQIDSDLLANYDVRYTDV 170

Query: 120 -------LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
                   + D+   I    G      L       +    I   R   L  A        
Sbjct: 171 VAFVARSTETDTPPAILAHDGSPVRYDLVIAGAFPVLQGAIPWWRRTQLVFAQLILIFAN 230

Query: 173 LNIGGDFLVKTFQGGTTNDILC------LLKKHFQKVIHVKP---VASRAESVEMFLLAK 223
           ++ GG  +V       T   L       +L++ F+ V   K     A R      +L+ +
Sbjct: 231 ISKGGSAIVAI----NTKAFLWTVDVIGMLRQCFETVTAHKTGRLHAVRTS---CYLVCR 283

Query: 224 GFR 226
           GFR
Sbjct: 284 GFR 286


>gi|171683097|ref|XP_001906491.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941508|emb|CAP67160.1| unnamed protein product [Podospora anserina S mat+]
          Length = 283

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 37/193 (19%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSN----------ANNTRVVAIDILDMEPIL--- 110
           + +    I+D+ ++PG +   A  +   +          +     V +   + + I    
Sbjct: 19  VTKPG-AILDVCAAPGGFLAAAMALNDPDLRVRACTLPFSQGGYKVLLPHENNDAIDINY 77

Query: 111 -GVKFFKFDFL---------DLDSWEFI--RQAIGGNPDLVLSDMAYPTIGHRKIDHLR- 157
             V     DF            D  +F+  +  I    D+ + D        R     + 
Sbjct: 78  CDVTMLAEDFGVKIEEIPASHPDHNKFMPRQFTIDEQYDIAICDGHVLRTQERASYREKR 137

Query: 158 -TMSLCEAATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV---AS 211
            ++ L  ++   ALE L  GG F+      +      +L  + + F  V   KP    A 
Sbjct: 138 ESIRLQNSSFVLALEHLRPGGTFIALLHKIEMWRIACLLQTMSR-FSDVRVYKPKCGHAK 196

Query: 212 RAESVEMFLLAKG 224
           R+     +++AK 
Sbjct: 197 RSSF---YMIAKD 206


>gi|303398740|emb|CBW46721.1| EP424R [African swine fever virus Georgia 2007/1]
          Length = 418

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILC 194
            L  +D                + L        L  L+ GG+ ++K +      T  ++C
Sbjct: 223 HLYTADGGINVGHDYNKQEELNLKLHFGQALTGLLSLSKGGNMILKHYTLNHAFTLSLIC 282

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +    F+++   KP +SR  + E +++ K 
Sbjct: 283 VFSHFFEELYITKPTSSRPTNSETYIVGKN 312


>gi|229892014|sp|P0C967|VF424_ASFWA RecName: Full=Probable methyltransferase EP424R; Short=pEP424R
          Length = 424

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILC 194
            L  +D                + L        L  L+ GG+ ++K +      T  ++C
Sbjct: 223 HLYTADGGINVGHDYNKQEELNLKLHFGQALTGLLSLSKGGNMILKHYTLNHAFTLSLIC 282

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +    F+++   KP +SR  + E +++ K 
Sbjct: 283 VFSHFFEELYITKPTSSRPTNSETYIVGKN 312


>gi|229892013|sp|P0C969|VF424_ASFP4 RecName: Full=Probable methyltransferase EP424R; Short=pEP424R
          Length = 424

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILC 194
            L  +D                + L        L  L+ GG+ ++K +      T  ++C
Sbjct: 223 HLYTADGGINVGHDYNKQEELNLKLHFGQALTGLLSLSKGGNMILKHYTLNHAFTLSLIC 282

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +    F+++   KP +SR  + E +++ K 
Sbjct: 283 VFSHFFEELYITKPTSSRPTNSETYIVGKN 312


>gi|229892012|sp|P0C970|VF424_ASFM2 RecName: Full=Probable methyltransferase EP424R; Short=pEP424R
          Length = 424

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILC 194
            L  +D                + L        L  L+ GG+ ++K +      T  ++C
Sbjct: 223 HLYTADGGINVGHDYNKQEELNLKLHFGQALTGLLSLSKGGNMILKHYTLNHAFTLSLIC 282

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +    F+++   KP +SR  + E +++ K 
Sbjct: 283 VFSHFFEELYITKPTSSRPTNSETYIVGKN 312


>gi|9628163|ref|NP_042749.1| pEP424R [African swine fever virus]
 gi|82051434|sp|Q65148|VF424_ASFB7 RecName: Full=Probable methyltransferase EP424R; Short=pEP424R
 gi|780425|gb|AAA65285.1| pEP424R [African swine fever virus]
 gi|162849265|emb|CAN10155.1| pEP424R [African swine fever virus Benin 97/1]
 gi|162849438|emb|CAN10403.1| pEP424R [African swine fever virus OURT 88/3]
 gi|291289499|emb|CBH29156.1| BA71V-EP424R [African swine fever virus E75]
 gi|1097445|prf||2113434BF EP424R gene
          Length = 424

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILC 194
            L  +D                + L        L  L+ GG+ ++K +      T  ++C
Sbjct: 224 HLYTADGGINVGHDYNKQEELNLKLHFGQALTGLLSLSKGGNMILKHYTLNHAFTLSLIC 283

Query: 195 LLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           +    F+++   KP +SR  + E +++ K 
Sbjct: 284 VFSHFFEELYITKPTSSRPTNSETYIVGKN 313


>gi|261406224|ref|YP_003242465.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp.
           Y412MC10]
 gi|261282687|gb|ACX64658.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp.
           Y412MC10]
          Length = 358

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           V+  + EG  +R+ +KLL+  ++  I   + R+ VD+G++PG W+              +
Sbjct: 189 VRFQREEGQISRAKFKLLEAEKQFGIPFDTFRKAVDIGAAPGGWTSFLLER------GLQ 242

Query: 98  VVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           V A+D   M P + G K  +   +  ++ +          DL++ DM+
Sbjct: 243 VTAVDPAKMHPSLDGHKNLR--VIHKNAADV--TFREHEFDLLVCDMS 286


>gi|329930851|ref|ZP_08284250.1| ribosomal RNA large subunit methyltransferase J [Paenibacillus sp.
           HGF5]
 gi|328934553|gb|EGG31058.1| ribosomal RNA large subunit methyltransferase J [Paenibacillus sp.
           HGF5]
          Length = 358

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           V+  + EG  +R+ +KLL+  ++  I   + R+ VD+G++PG W+              +
Sbjct: 189 VRFQREEGQISRAKFKLLEAEKQFGIPFDTFRKAVDIGAAPGGWTSFLLER------GLQ 242

Query: 98  VVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           V A+D   M P + G K  +   +  ++ +          DL++ DM+
Sbjct: 243 VTAVDPAKMHPSLDGHKNLR--VIHKNAADV--TFREHEFDLLVCDMS 286


>gi|256599194|gb|ACV04606.1| polyprotein [Cell fusing agent virus]
          Length = 3255

 Score = 53.8 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 47   WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            + +R   KL +I  K++  + + R+VDLG   G WSQ A      ++     +     + 
Sbjct: 2488 YVSRGGLKLNEIISKYE-WRPSGRVVDLGCGRGGWSQRAVMEETVSSALGFTIGG--AEK 2544

Query: 107  EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY--PTIGHRKIDHLRTMSLCEA 164
            E         ++   L +   + +      D ++ D+    P+    K   L+ + L E 
Sbjct: 2545 ENPQRFVTKGYNLATLKTGVDVHRLTPFRCDTIMCDIGESDPSPIKEKTRTLKVLQLLEN 2604

Query: 165  ATFFALEMLNIGGDFLVKTFQGGTTNDILC--LLKKHFQKVIHVKPVASRAESVEMFLL 221
                A    N G  F+ K     +   +     L+  +     V+   SR  S EM+ +
Sbjct: 2605 WL-LA----NPGAHFVCKILSPYSLEVLRKIESLQHLYNG-RLVRLSHSRNSSAEMYYV 2657


>gi|159900817|ref|YP_001547064.1| THUMP domain-containing protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893856|gb|ABX06936.1| THUMP domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 354

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           + A+ +G  +R+ +KLL+      I   +  + +DLG++PG W+++  R          V
Sbjct: 174 RFAREQGQLSRAEFKLLEAQALFNIEWPDHGQALDLGAAPGGWTRILRRAGLP------V 227

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           VAID  D+ P   +++ +     L               ++++DM         +     
Sbjct: 228 VAIDPADLHP--SLRYDQG-VRHLQILAQRFLPTQERFTVIVNDMRIDARDSAWLMVDSA 284

Query: 159 MSLCEAATFFALEMLN 174
            +L       A+  L 
Sbjct: 285 NALTNDGL--AVVTLK 298


>gi|325119988|emb|CBZ55541.1| FtsJ methyltransferase domain-containing protein 2, related
           [Neospora caninum Liverpool]
          Length = 1368

 Score = 53.4 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAE--SV 216
           L  +    A ++L  GG F+   F   T  T  +L L    F++V  VKP  SR    + 
Sbjct: 350 LLLSEFLIAFQLLQQGGTFICTVFDSFTAFTASLLYLCTALFEEVYMVKP--SRNRWTNS 407

Query: 217 EMFLLAKGFRK 227
           E  L+A  FR+
Sbjct: 408 ERQLVALKFRR 418


>gi|20090852|ref|NP_616927.1| FtsJ-like methyltransferase [Methanosarcina acetivorans C2A]
 gi|19915923|gb|AAM05407.1| FtsJ-like methyltransferase [Methanosarcina acetivorans C2A]
          Length = 226

 Score = 53.4 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 24/141 (17%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI--TGSNANNTRVVA 100
           Q +G+     +KL  I E+ ++L+   R++DLGSS G +   A+ I         +R   
Sbjct: 56  QPQGY-----FKLRFIQEESEVLKPGDRVLDLGSSAGGFLLFASEIVSHIKGLEFSRDFR 110

Query: 101 IDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            ++  +      V+    D   +     +++      D++LSDM                
Sbjct: 111 SELGKIAFEKENVEVIFGDVFTIP----LKELSEEPVDVILSDMTLEPED---------- 156

Query: 160 SLCEAATFFALEMLNIGGDFL 180
                A    L +L  GG  L
Sbjct: 157 --SIKALSRVLPLLKEGGKLL 175


>gi|147921289|ref|YP_684897.1| putative ribosomal RNA methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110620293|emb|CAJ35571.1| putative ribosomal RNA methyltransferase [uncultured methanogenic
           archaeon RC-I]
          Length = 216

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 38/189 (20%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           + EG+     +KL  I  +  IL+   R++D+GSS G +   A+ I  ++       + +
Sbjct: 55  RPEGY-----FKLKGIQNQSGILRPGDRVLDIGSSAGGFLMYASGI--ADEIVGIEYSEE 107

Query: 103 ILD-----MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
             +     ME    VK    D  ++D          G  D++L+DM         ++   
Sbjct: 108 FREPLEAVMEEYPNVKVLFGDAFNMDLTPL------GEFDVILNDM--------TVEPAM 153

Query: 158 TMSLCEAATFFALEMLNIGGDF--LVKTFQGGTTNDILCLL-KKHFQKVIHVKPVASRAE 214
           ++ +           L  GG    ++K  +       L LL KK  + V  ++P     E
Sbjct: 154 SIEIMARFLPL----LRGGGRVLQVLKLDKISDVEPFLILLEKKGLEIVKVIRP-----E 204

Query: 215 SVEMFLLAK 223
             E +++A+
Sbjct: 205 KREAYVIAR 213


>gi|27735349|ref|NP_776048.1| putative non-structural protein NS5; RNA-dependent RNA polymerase;
           methyltransferase component of capping enzyme [Cell
           fusing agent virus]
          Length = 888

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R   KL +I  K++  + + R+VDLG   G WSQ A      ++     +     + 
Sbjct: 42  YVSRGGLKLNEIISKYE-WRPSGRVVDLGCGRGGWSQRAVMEETVSSALGFTIGG--AEK 98

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY--PTIGHRKIDHLRTMSLCEA 164
           E         ++   L +   + +      D ++ D+    P+    K   L+ + L E 
Sbjct: 99  ENPQRFVTKGYNLATLKTGVDVHRLTPFRCDTIMCDIGESDPSPIKEKTRTLKVLQLLEN 158

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILC--LLKKHFQKVIHVKPVASRAESVEMFLL 221
                    N G  F+ K     +   +     L+  +     V+   SR  SVEM+ +
Sbjct: 159 WLLV-----NPGAHFVCKILSPYSLEVLRKIESLQHLYNG-RLVRLSHSRNSSVEMYYI 211


>gi|9627243|ref|NP_041725.1| cell fusing agent polyprotein [Cell fusing agent virus]
 gi|464429|sp|P33515|POLG_MCFA RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein C;
            AltName: Full=Capsid protein; AltName: Full=Core protein;
            Contains: RecName: Full=Small envelope protein M;
            AltName: Full=Matrix protein; Contains: RecName:
            Full=Envelope protein E; Contains: RecName:
            Full=Non-structural protein 1; Short=NS1; Contains:
            RecName: Full=Non-structural protein 2A; Short=NS2A;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Non-structural protein 4B; Short=NS4B;
            Contains: RecName: Full=RNA-directed RNA polymerase NS5;
            AltName: Full=NS5
 gi|336191|gb|AAA48509.1| cell fusing agent polyprotein [Flavivirus sp.]
          Length = 3341

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 47   WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            + +R   KL +I  K++  + + R+VDLG   G WSQ A      ++     +     + 
Sbjct: 2495 YVSRGGLKLNEIISKYE-WRPSGRVVDLGCGRGGWSQRAVMEETVSSALGFTIGG--AEK 2551

Query: 107  EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY--PTIGHRKIDHLRTMSLCEA 164
            E         ++   L +   + +      D ++ D+    P+    K   L+ + L E 
Sbjct: 2552 ENPQRFVTKGYNLATLKTGVDVHRLTPFRCDTIMCDIGESDPSPIKEKTRTLKVLQLLEN 2611

Query: 165  ATFFALEMLNIGGDFLVKTFQGGTTNDILC--LLKKHFQKVIHVKPVASRAESVEMFLL 221
                     N G  F+ K     +   +     L+  +     V+   SR  SVEM+ +
Sbjct: 2612 WLLV-----NPGAHFVCKILSPYSLEVLRKIESLQHLYNG-RLVRLSHSRNSSVEMYYI 2664


>gi|294495319|ref|YP_003541812.1| RNA-binding S4 domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666318|gb|ADE36167.1| RNA-binding S4 domain protein [Methanohalophilus mahii DSM 5219]
          Length = 218

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 25/179 (13%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI--TGSNANNTRVVAIDI-LDM 106
           R  +KL  I EK  +++    ++DLGSS G +   A  +         +R    ++    
Sbjct: 58  RGYFKLRNIQEKFDLIKEGDSVLDLGSSAGGFLMFACELGANAVGIEYSRHFRSELGRLA 117

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
                +     D   + + +      G   D++L+DM         ++   ++     A 
Sbjct: 118 YENPNITIILDDVFTMPTSKIP----GSPFDVLLTDM--------TLEPEASIE----AL 161

Query: 167 FFALEMLNIGG-DF-LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              L +L  GG  F ++K  +G   N ++  +K    +V+ V   A R    E +++AK
Sbjct: 162 GKVLPLLKEGGMIFQVIKLGRGRNKNRLVENIKSLGIEVLEVLDSAQR----EFYVVAK 216


>gi|90416124|ref|ZP_01224056.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2207]
 gi|90331849|gb|EAS47063.1| ribosomal RNA large subunit methyltransferase J [marine gamma
           proteobacterium HTCC2207]
          Length = 38

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 190 NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           ++ +  ++  F  V   KP ASR++S E++++AKG +
Sbjct: 1   DEFVRHVRTLFNTVSMRKPDASRSKSREVYMVAKGLK 37


>gi|298241873|ref|ZP_06965680.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ktedonobacter racemifer
           DSM 44963]
 gi|297554927|gb|EFH88791.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ktedonobacter racemifer
           DSM 44963]
          Length = 363

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 71/175 (40%), Gaps = 39/175 (22%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           +R+ +KLL+  E   I L    + +DLG++PG W+++             VVA+D  +++
Sbjct: 190 SRAEFKLLEALEVFHITLPEQGKALDLGAAPGGWTRLLLN------AGLDVVAVDPANLD 243

Query: 108 P----ILGVKFFKFDFLD--LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           P      G++ ++  + +  LD+   ++       DL+++DM        ++    +   
Sbjct: 244 PRLRAYRGLEHYQG-YTERYLDAQAQLKHFT--RFDLIVNDMKMDAREAARLLARASAQ- 299

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTT----------NDILCLLKKHFQKVIHV 206
                      L   G F++  F+              N+ L  ++KHF  V   
Sbjct: 300 -----------LRPEG-FIISVFKLPHATESINPLKTMNEALKTMRKHFNIVRAH 342


>gi|225562093|gb|EEH10373.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 374

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 29/180 (16%)

Query: 71  IVDLGSSPGSWSQVAARITGS-----------NANNTRVVAIDILDMEPILGVKFFKFDF 119
           I+D+  +PG + + A R               N  +  ++  ++   +  L V     D 
Sbjct: 124 ILDMCMAPGGFLETALRKNPGSHALAFSLPVVNGGHKSLLPRELDVDQRFLDVTMLAADM 183

Query: 120 L-------DLDSWEFIRQAIG--GNPDLVLSDMAYPTIGHRKIDHLR--TMSLCEAATFF 168
                     D+  F+ +      + DLV+ D        R     R     L       
Sbjct: 184 GVNEIDNNHPDAEHFLPRQFTSYQHFDLVICDGQVLRTHDRAAYRERREAKRLIVTQLAL 243

Query: 169 ALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPVA--SRAESVEMFLLAKG 224
            L+ L  GG  ++    F+   T +++    K F  V  +KP A  ++  S   +++AK 
Sbjct: 244 GLQQLRPGGTMVILLHKFEAWDTVNLIWTFWK-FSSVRLLKPKAGHTKRSSF--YMVAKD 300


>gi|310831432|ref|YP_003970075.1| putative FtsJ-like methyltransferase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386616|gb|ADO67476.1| putative FtsJ-like methyltransferase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 445

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 72/218 (33%), Gaps = 41/218 (18%)

Query: 49  ARSAYKLLQINEKHQILQSNR-RIVDLGSSPGSWSQVAARIT------------------ 89
           +R+ +K+ +I    ++  +       L   PGS+ Q                        
Sbjct: 101 SRAFFKMWEIMVVFKLADTKDFSYSALAEGPGSFLQAVLHYREKYFELKNNKFHSITINP 160

Query: 90  --GSNANNTRVVAIDILDMEP--ILGVKFFK------------FDFLDLDSWEFIRQAIG 133
             G N + +R       D  P  I   K +K             D  D  S    R+ I 
Sbjct: 161 EDGKNIDVSRNFLGYYEDKYPNLIKPHKTYKSSKASKYKARDTGDLTDFKSISNFRKEIK 220

Query: 134 GNP---DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
                 +LV +D  +               L        L +    GD ++K F+  TT 
Sbjct: 221 KTKTFSNLVTADGGFAW-NDENYQEQEAYPLIIGQMLSGLMIQEKNGDMVIKMFETFTTV 279

Query: 191 --DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              +  LL   + ++   KP  SRA + E +L+ KGF+
Sbjct: 280 SIKLTYLLSTLYNEIYFYKPYFSRASNSERYLILKGFK 317


>gi|325120770|emb|CBZ56325.1| putative ftsJ-like methyltransferase domain-containing protein
           [Neospora caninum Liverpool]
          Length = 1307

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTND 191
           G  DLV +D ++       +    T  L  A     L +LNI G  +VK +      +  
Sbjct: 151 GLADLVTADGSFDVQFAPHLQEELTAPLVFAEVVCMLGLLNIKGTGIVKMYGLLSHQSIS 210

Query: 192 ILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           IL +L   F  V+  KP  SR  + E++ +   F
Sbjct: 211 ILAILSMCFNHVVLAKPSMSRPGNSELYAVCLEF 244


>gi|284032696|ref|YP_003382627.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Kribbella flavida DSM
           17836]
 gi|283811989|gb|ADB33828.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Kribbella flavida DSM
           17836]
          Length = 334

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           + A+ +   +RS +KL +  +  ++ L+   R +DLG+SPG W+++  +          V
Sbjct: 166 RLARSDERVSRSEFKLEEAIQTFRLDLRPGGRALDLGASPGGWTRILRQYEQE------V 219

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
            ++D   ++P L                F R  +  +   V++DM    +   ++     
Sbjct: 220 WSVDPGALDPRLDTDRRIHHVATTAGEFFRRNQVRFDA--VVNDMRMDQVMSARVMLDAV 277

Query: 159 MSLCEAATFFALEMLNIGG 177
             L   A   A+  L  GG
Sbjct: 278 PHLRRGAL--AVVTLKGGG 294


>gi|218677613|ref|ZP_03525510.1| putative ribosomal RNA methyltransferase/cell division FtsJ protein
           [Rhizobium etli CIAT 894]
          Length = 42

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/31 (74%), Positives = 30/31 (96%)

Query: 196 LKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           +K++F++V+HVKP ASRAESVEMFLLAKGF+
Sbjct: 1   MKQNFRQVVHVKPNASRAESVEMFLLAKGFK 31


>gi|237842511|ref|XP_002370553.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
           gondii ME49]
 gi|211968217|gb|EEB03413.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
           gondii ME49]
          Length = 1422

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              +       A  G  DLV +D ++       +    T  L  A     L +LNI G  
Sbjct: 274 TSREPRTRDNPAPFGLADLVTADGSFDVQFAPHLQEELTAPLVFAEVVCMLGLLNIRGTG 333

Query: 180 LVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +VK +      +  IL +L   F  V+  KP  SR  + E++ +   F
Sbjct: 334 IVKMYGLLSHQSISILAILSMCFNHVVLAKPSMSRPGNSELYAVCLEF 381


>gi|221502672|gb|EEE28392.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1422

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              +       A  G  DLV +D ++       +    T  L  A     L +LNI G  
Sbjct: 274 TSREPRTRDNPAPFGLADLVTADGSFDVQFAPHLQEELTAPLVFAEVVCMLGLLNIRGTG 333

Query: 180 LVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +VK +      +  IL +L   F  V+  KP  SR  + E++ +   F
Sbjct: 334 IVKMYGLLSHQSISILAILSMCFNHVVLAKPSMSRPGNSELYAVCLEF 381


>gi|221485120|gb|EEE23410.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1422

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              +       A  G  DLV +D ++       +    T  L  A     L +LNI G  
Sbjct: 274 TSREPRTRDNPAPFGLADLVTADGSFDVQFAPHLQEELTAPLVFAEVVCMLGLLNIRGTG 333

Query: 180 LVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +VK +      +  IL +L   F  V+  KP  SR  + E++ +   F
Sbjct: 334 IVKMYGLLSHQSISILAILSMCFNHVVLAKPSMSRPGNSELYAVCLEF 381


>gi|254688388|ref|YP_003084132.1| putative NS5 protein [Aedes flavivirus]
          Length = 887

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 13/179 (7%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R   KL +I  K+Q       +VDLG   G WSQ         + +   +  +  D 
Sbjct: 41  YVSRGGLKLDEIIRKYQWTPMGH-VVDLGCGRGGWSQRVVMEETVTSVHGFTIGGN--DK 97

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY--PTIGHRKIDHLRTMSLCEA 164
           E         ++   L     + +      D ++ D+    P +   +   L+ + L E 
Sbjct: 98  ENPQRFVTRGYNLTSLKPGVDVYKLEPKRCDTIMCDIGESDPNLTKERTRTLKVLQLLET 157

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMFLL 221
                    N    F+ K     +   +  +  L++ ++    V+   SR  + EM+ +
Sbjct: 158 WLSI-----NPEAQFVCKVLSPYSLEVLRKVESLQQKYKG-KLVRLAHSRNSTAEMYYI 210


>gi|254688377|ref|YP_003029843.1| polyprotein [Aedes flavivirus]
 gi|251823440|dbj|BAH83667.1| polyprotein [Aedes flavivirus]
          Length = 3341

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 13/179 (7%)

Query: 47   WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            + +R   KL +I  K+Q       +VDLG   G WSQ         + +   +  +  D 
Sbjct: 2495 YVSRGGLKLDEIIRKYQWTPMGH-VVDLGCGRGGWSQRVVMEETVTSVHGFTIGGN--DK 2551

Query: 107  EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY--PTIGHRKIDHLRTMSLCEA 164
            E         ++   L     + +      D ++ D+    P +   +   L+ + L E 
Sbjct: 2552 ENPQRFVTRGYNLTSLKPGVDVYKLEPKRCDTIMCDIGESDPNLTKERTRTLKVLQLLET 2611

Query: 165  ATFFALEMLNIGGDFLVKTFQGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMFLL 221
                     N    F+ K     +   +  +  L++ ++    V+   SR  + EM+ +
Sbjct: 2612 WLSI-----NPEAQFVCKVLSPYSLEVLRKVESLQQKYKG-KLVRLAHSRNSTAEMYYI 2664


>gi|254500931|ref|ZP_05113082.1| hemolysin A [Labrenzia alexandrii DFL-11]
 gi|222437002|gb|EEE43681.1| hemolysin A [Labrenzia alexandrii DFL-11]
          Length = 246

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 20/140 (14%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           G+ +R+A KL++      +   ++  +D+G+S G ++QV  +  G+   +   V  D L 
Sbjct: 59  GYVSRAALKLIEGLRTFNVTPVDKICLDIGASTGGFTQVLLQ-NGATRVHAIDVGHDQLH 117

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
            +     +    D L  ++ E  ++ +GG+ P L++SD++             ++ L   
Sbjct: 118 DKLRRDPRVIAQDGL--NARELTQEHLGGDRPKLLVSDVS-----------FISLKL--- 161

Query: 165 ATFFALEMLNIG--GDFLVK 182
           A   AL++   G  G FLVK
Sbjct: 162 ALPPALDLAAPGADGIFLVK 181


>gi|312087447|ref|XP_003145475.1| hypothetical protein LOAG_09900 [Loa loa]
 gi|307759362|gb|EFO18596.1| hypothetical protein LOAG_09900 [Loa loa]
          Length = 584

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
           L +     +L +L  GG F+VK +      T  +L  L   F++V  +KP  S+  + E
Sbjct: 251 LLQKEIDISLSLLQTGGTFIVKMYTSFLNDTITLLSRLLMFFKEVHVIKPSCSKPGNSE 309


>gi|258565517|ref|XP_002583503.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907204|gb|EEP81605.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 367

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 44/212 (20%)

Query: 53  YKLL-----QIN-EKHQILQSNRR----IVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           +K++     Q+  +KH I +        ++D+  +PG +S    +    +      +  +
Sbjct: 76  FKMMRHIGDQLQADKHIIPRPKDARKLEVLDICMAPGGFSATTLKYNKYSRIYGLSLPEE 135

Query: 103 -------ILDMEPILGVKFFKFDFLDLDS-----------------WEFIRQAIGGNPDL 138
                  + +      V+  + D   L +                 +   R   G   DL
Sbjct: 136 EGGHQIFLQNWRNDPRVQILQMDITMLSTEFGSPDLLPPDNALASRFSDCRPFDGLEADL 195

Query: 139 VLSDMAYPTIGHRKIDH-LRTMSLCEAATFFALEMLNIGGDFLV--KTFQGGTTNDILCL 195
           V  D        R I        L  A    AL+ +  GG  +V           ++L +
Sbjct: 196 VFCDGQVLRTHERAIGSKFEATRLMTAQLILALQRIKNGGTIVVLLHRANSPRIVELLYI 255

Query: 196 LKKHFQKVIHVKPVAS---RAESVEMFLLAKG 224
             + F ++   KP +S   R+     +L+AK 
Sbjct: 256 FSQ-FAEIDLFKPTSSHATRSSF---YLIAKN 283


>gi|71027093|ref|XP_763190.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350143|gb|EAN30907.1| hypothetical protein, conserved [Theileria parva]
          Length = 980

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKID-HLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           E +   +  N D +  D          +   L T  +  A    AL  LN  GD +++ F
Sbjct: 730 EILESNLKRNCDFIFCDPYNNVNYRELLYKELNTKYILVAQLIQALNCLNDNGDLVLRIF 789

Query: 185 Q--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                 T  ILC L   F +VI  +P +    S E+F++ K ++
Sbjct: 790 SLFTRFTTGILCCLSTVFDEVILYRPESVVNWSQEVFVICKNYK 833



 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 177 GDFLVKTFQGGTTNDILCLLK---KHFQKVIHVKPVASRAESVEMFLLAKGF 225
           G F  + F       +   LK     F+++   KP  SR  + E++++   F
Sbjct: 265 GSFNCQ-FDPNNQELLTSPLKFADLCFKRLEVYKPFLSREANSEVYVICLDF 315


>gi|315040694|ref|XP_003169724.1| hypothetical protein MGYG_07891 [Arthroderma gypseum CBS 118893]
 gi|311345686|gb|EFR04889.1| hypothetical protein MGYG_07891 [Arthroderma gypseum CBS 118893]
          Length = 366

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 37/203 (18%)

Query: 57  QINEKHQILQSNR-----RIVDLGSSPGSWSQVAARITGSNANNTRVVAID-------IL 104
           Q+     I+   R     +++D+  +PG +S    +    +      +  +       + 
Sbjct: 85  QLQAAKHIIPPPRETKSFKVLDICMAPGGYSATVLKYNKYSRIYGLSLPEEEGGHQILLQ 144

Query: 105 DMEPILGVKFFKFDF----LDLDSWEFI-------------RQAIGGNPDLVLSDMAYPT 147
           +      V+  + D      +L     +             +   G   DL+  D     
Sbjct: 145 NWRKDPRVQILQMDITMLSTELGCPNLLPPDNPAASQFFDCKPFDGLEADLIFCDGQVLR 204

Query: 148 IGHRKIDH-LRTMSLCEAATFFALEMLNIGGDFLVKTFQ-GGTTNDILCLLKKHFQKVIH 205
              R +D       L  A    AL+ +  GG  ++   +     N +L      F ++  
Sbjct: 205 THERAVDSKFEASRLTSAQLIIALQRIKKGGAIVILLHRVNSPQNVVLLHSFSQFAEIDL 264

Query: 206 VKP---VASRAESVEMFLLAKGF 225
            KP    A+R+     +L+AK  
Sbjct: 265 FKPTPSHATRSSF---YLVAKNL 284


>gi|310642360|ref|YP_003947118.1| ribosomal RNA methyltransferase rrmj/ftsj [Paenibacillus polymyxa
           SC2]
 gi|309247310|gb|ADO56877.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus polymyxa
           SC2]
          Length = 282

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           V+  + +G  +R+ +KLL+      I   +  + +D+G++PG W+              +
Sbjct: 111 VRFQKEDGQISRAKFKLLEAEATFGIDFSAFHQGLDIGAAPGGWTSFLLER------GLK 164

Query: 98  VVAIDILDMEP 108
           V A+D   MEP
Sbjct: 165 VTAVDPAKMEP 175


>gi|221482431|gb|EEE20779.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2173

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 135  NPDLVLSDMAYPTIGHRKID---HLRTMSLCEAATFFALE----MLNIGGDFLVKTFQGG 187
            +  LV++D  +      K           LC       L     +L  GG+F+ K F   
Sbjct: 1129 HVCLVVADGGFHLAIDAKTGRHIENYQELLCARLLLSELLFALMLLEEGGNFVCKIFDTF 1188

Query: 188  T--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            T  T  ++ ++ + F+    +KP+ SRA + E +L+    +
Sbjct: 1189 THFTASLVYIVGRLFEDCAILKPIRSRAANSERYLVGLRLK 1229


>gi|328771261|gb|EGF81301.1| hypothetical protein BATDEDRAFT_34868 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 566

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 43/208 (20%)

Query: 51  SAYKLLQINEKHQILQSNRR--------IVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           SA KL  ++ +      +++          D  S  G +++             R   + 
Sbjct: 185 SAVKLASLDAQFNFSNIDQKTQNDYGIEFADFCSEYGGFTEYLLWRKQLMRQPARGWGMT 244

Query: 103 IL--------DMEPILGVKFFKFDF---------LDLDSWEFIRQAI--------GGNPD 137
           +          M    G  F + DF          D+ + E I+           G   D
Sbjct: 245 LRGEKDYMFKKMIVPPGA-FPQLDFEAVYGIDGSGDICNSENIKAFADHVMKATNGRGVD 303

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
           LVL+D    T+         +             +L               + ++L +L 
Sbjct: 304 LVLADGELDTMHDGMHLENHSHQRMLCQILSMFHILKQ---------VTPLSGELLYILH 354

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGF 225
            HF K+  +KP+ASR    E +++ +  
Sbjct: 355 LHFSKIAILKPLASRPADAERYIICENL 382


>gi|169600121|ref|XP_001793483.1| hypothetical protein SNOG_20029 [Phaeosphaeria nodorum SN15]
 gi|160705380|gb|EDP89875.1| hypothetical protein SNOG_20029 [Phaeosphaeria nodorum SN15]
          Length = 83

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 27 RDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
            W +R   D + + A+++G ++R+A+KLL++
Sbjct: 52 TRWKSRQGKDFFAREARVQGLKSRAAFKLLEV 83


>gi|86606840|ref|YP_475603.1| ribosomal RNA large subunit methytransferase J [Synechococcus sp.
           JA-3-3Ab]
 gi|86555382|gb|ABD00340.1| ribosomal RNA large subunit methytransferase J [Synechococcus sp.
           JA-3-3Ab]
          Length = 356

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 26/164 (15%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           +R+ +KLL+  +  ++ LQ   R +DLG++PG WS++  R+ G      +V A+D  +++
Sbjct: 188 SRAEFKLLEAIQVFRVPLQPGGRALDLGAAPGGWSRIL-RLHGQ-----QVTAVDPAELD 241

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
             L             S +       G   L+L+DM        ++D   +  L  A   
Sbjct: 242 ERLRHDA--GICHHRLSAQAYLARCPGQFHLILNDM--------RMDGRASAHLMAA--- 288

Query: 168 FALEMLNIGGDFLV-----KTFQGGTTNDILCLLKKHFQKVIHV 206
           FA   L   G  ++        +       L +L   F  V   
Sbjct: 289 FAPH-LEPQGAAVMTLKLPHQHRLRVLRQTLDILGSAFPVVRAR 331


>gi|55770827|ref|YP_138510.1| Large protein [Simian virus 41]
 gi|548838|sp|P35341|L_SV41 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|433522|emb|CAA45569.1| Large protein [Simian virus 41]
          Length = 2269

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
            I D  P+        D  + D   FI   +G     ++      T    +    R+    
Sbjct: 1881 IEDFIPLWNGNGAVTDLSNKDCVAFIIHKVGAEQASLVHVDLESTANLNQQSLSRSQ--- 1937

Query: 163  EAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
              A   A  +L  GG  + KT        + + C+L   F K+  ++   S   S E++L
Sbjct: 1938 IHALIIATTVLKRGGFLVYKTSWLPFSRLSQLACVLWSFFDKITMIRSSYSDPNSHEIYL 1997

Query: 221  LAK---GFR 226
            + +    F+
Sbjct: 1998 VCRLAADFK 2006


>gi|237841379|ref|XP_002369987.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
            gondii ME49]
 gi|211967651|gb|EEB02847.1| ftsJ-like methyltransferase domain-containing protein [Toxoplasma
            gondii ME49]
          Length = 2173

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 172  MLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L  GG+F+ K F   T  T  ++ ++ + F+    +KP+ SRA + E +L+    +
Sbjct: 1173 LLEEGGNFVCKIFDTFTHFTASLVYIVGRLFEDCAILKPIRSRAANSERYLVGLRLK 1229


>gi|221504479|gb|EEE30152.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2173

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 172  MLNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            +L  GG+F+ K F   T  T  ++ ++ + F+    +KP+ SRA + E +L+    +
Sbjct: 1173 LLEEGGNFVCKIFDTFTHFTASLVYIVGRLFEDCAILKPIRSRAANSERYLVGLRLK 1229


>gi|67906106|dbj|BAE00056.1| large protein [Human parainfluenza virus 2]
          Length = 2263

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
            I D  P+        D    D+  FI   +G     LV  D+      +++      +  
Sbjct: 1877 IKDFVPLWNGNGAVTDLSTKDAVAFIIHKVGAEKASLVHIDLESTANINQQTLSRSQIH- 1935

Query: 162  CEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
               +   A  +L  GG  + KT        + +  LL   F ++  ++   S   S E++
Sbjct: 1936 ---SLIIATTVLKRGGILIYKTSWLPFSRFSQLASLLWCFFDRIHLIRSSYSDPHSHEVY 1992

Query: 220  LLAK---GFR 226
            L+ +    FR
Sbjct: 1993 LVCRLAADFR 2002


>gi|291334186|gb|ADD93853.1| hypothetical protein [uncultured marine bacterium
          MedDCM-OCT-S08-C1340]
          Length = 51

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 27 RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINE 60
          ++W+N+H  D YV+ +Q   +R+R+ +KL +I E
Sbjct: 14 KNWVNKHSKDRYVKLSQTGNYRSRAFHKLHEIQE 47


>gi|328872482|gb|EGG20849.1| hypothetical protein DFA_00714 [Dictyostelium fasciculatum]
          Length = 469

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 45  EGWRARSAYKLLQINEKHQILQS----NRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           +   +RS  KL ++ E+              +DLG+SPG WS  A        +  +   
Sbjct: 294 QNLPSRSYLKLAELAERFPDYSMESPAGGVAIDLGASPGGWSLFALEQGCRVVSIDKAQV 353

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFI 128
            D             + D L+ +  + +
Sbjct: 354 FDKRLDRYKDRSITIQGDALEYEPPKAV 381


>gi|300114178|ref|YP_003760753.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
           C-113]
 gi|299540115|gb|ADJ28432.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
           C-113]
          Length = 354

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 40  QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           +        +R+  KL +         ++ + LQ   R VDLG++PG WS    R     
Sbjct: 177 RLKHPASAPSRATLKLEEAWQVFLTPEQRRKWLQPGMRAVDLGAAPGGWSWQLVRR---- 232

Query: 93  ANNTRVVAIDILDMEP 108
               RV+A+D   + P
Sbjct: 233 --GIRVIAVDNGAIAP 246


>gi|308069316|ref|YP_003870921.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
 gi|305858595|gb|ADM70383.1| Predicted SAM-dependent methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 352

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           V+  + +G  +R+ +KLL+      I   +  + +D+G++PG W+              +
Sbjct: 181 VRFQKEDGQISRAKFKLLEAEATFGIDFGAFHQGLDIGAAPGGWTSFLLER------GLK 234

Query: 98  VVAIDILDMEP 108
           V A+D   MEP
Sbjct: 235 VTAVDPAKMEP 245


>gi|300087265|ref|YP_003757787.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299526998|gb|ADJ25466.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 222

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+   +++D+    GS +Q+ A       +  RV  +D+   M  +              
Sbjct: 53  LKPGDQVLDICCGTGSTTQLIAERL----DQGRVTGVDLSPDMLAVA---------RKKT 99

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           +   +   +     L   D ++  +      H     L  AA   A  +L  GG FL 
Sbjct: 100 AGARVSFEMASVDRLPFDDESFDHVVCSYGLHEIPRELRLAALAEARRVLKPGGRFLT 157


>gi|242213456|ref|XP_002472556.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728350|gb|EED82246.1| predicted protein [Postia placenta Mad-698-R]
          Length = 405

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 27/180 (15%)

Query: 68  NRRIVDLGSSPGSWSQVA----ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            RR +DLG +PG +SQ        + G         A   L ++      F +  + DL 
Sbjct: 113 VRRFLDLGCAPGGFSQWLLQHNRDVYGVGVTLPVEEAGIPLQIDSAFLANF-RVCYDDLI 171

Query: 124 SWEFIRQAIGGNPDLVLSDMAYP----TIGHRKIDHLRT------MSLCEAATFFALEML 173
                    G    + L D  +      I    +   R       M +  + T   +  +
Sbjct: 172 RLATASMESGVPVQIHLPDDHHEPYDLVIAGAYLVLQRQKPWWQRMQMVLSQTLIIISNI 231

Query: 174 NIGGDFLV----KTFQGGTTNDILCLLKKHFQKVIHVKP---VASRAESVEMFLLAKGFR 226
              G  +V    K F      D++ +L++ F+ V   K     A R      +L+ +GFR
Sbjct: 232 AADGTAVVSISTKLFLW--IVDLIGMLRQCFKTVTAHKTGRLHAVRTS---CYLICRGFR 286


>gi|19525727|ref|NP_598406.1| Large protein [Human parainfluenza virus 2]
 gi|133605|sp|P26676|L_PI2HT RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|61991|emb|CAA40788.1| Large protein [Human parainfluenza virus 2]
          Length = 2262

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 103  ILDMEPILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
            I D  P+        D    D+  FI   +G     LV  D+      +++      +  
Sbjct: 1876 IKDFVPLWNGNGAVTDLSTKDAVAFIIHKVGAEKASLVHIDLESTANINQQTLSRSQIH- 1934

Query: 162  CEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
               +   A  +L  GG  + KT        + +  LL   F ++  ++   S   S E++
Sbjct: 1935 ---SLIIATTVLKRGGILIYKTSWLPFSRFSQLAGLLWCFFDRIHLIRSSYSDPHSHEVY 1991

Query: 220  LLAK---GFR 226
            L+ +    FR
Sbjct: 1992 LVCRLAADFR 2001


>gi|310796601|gb|EFQ32062.1| hypothetical protein GLRG_07206 [Glomerella graminicola M1.001]
          Length = 338

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 48/167 (28%), Gaps = 28/167 (16%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAID----ILDMEPILGVKFFKFDFL---- 120
           +RI+D+  +PG +  +A +           + +        + P   V+    D      
Sbjct: 82  KRILDMCMAPGGFLAIALQKNPGAHALGFSLPVSQGGFQRLLSPSKNVEVKFMDITMLVQ 141

Query: 121 ----------DLDSWEFIRQAI---GGNPDLVLSDMAYPTIGHRKIDHLR----TMSLCE 163
                       DS  FIRQ          LVL D              R       L  
Sbjct: 142 DMGATDIPSNHPDSDHFIRQQQLGPQDKFHLVLCDGQVLRQHQEFRAQYRERCEARRLTA 201

Query: 164 AATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKP 208
                 LE L  GG  +V     +   T  +L    K F  V   KP
Sbjct: 202 TQLALGLEHLEPGGTMVVLLHKVEAWDTVLLLWKFSK-FSTVRLFKP 247


>gi|254433345|ref|ZP_05046853.1| hypothetical protein NOC27_276 [Nitrosococcus oceani AFC27]
 gi|207089678|gb|EDZ66949.1| hypothetical protein NOC27_276 [Nitrosococcus oceani AFC27]
          Length = 310

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 40  QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGS 91
           +        +R+  KL +        +++ + LQ   + VDLG++PG W+ Q+  R    
Sbjct: 177 RLKHPANAPSRATLKLEEAWQVFLTPDQRRKWLQPGMKAVDLGAAPGGWTWQMVRR---- 232

Query: 92  NANNTRVVAIDILDMEP 108
                RV A+D   + P
Sbjct: 233 ---GIRVTAVDNGAIAP 246


>gi|321459159|gb|EFX70215.1| hypothetical protein DAPPUDRAFT_217428 [Daphnia pulex]
          Length = 300

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 5/142 (3%)

Query: 81  WSQVAARITGSNANNTRVVAIDILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGGNPD 137
           WS +             ++  D      +    F      + ++  + + + +      +
Sbjct: 145 WSAITLNPYYEGNFRKSMIGDDRFISSTLKHWNFGIDDTGNIMEWCNVKAMLKKPHHQVN 204

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILCL 195
           LV +D +     +          L    T  AL +L+ GG F++K F     T+  +L L
Sbjct: 205 LVTADGSVDCADNPGEQENYLAPLHWCETISALLILSNGGSFILKMFTLFEHTSVSLLYL 264

Query: 196 LKKHFQKVIHVKPVASRAESVE 217
           L   F+++   KP  S+  + E
Sbjct: 265 LMISFEELHVFKPCTSKEGNSE 286


>gi|323454467|gb|EGB10337.1| hypothetical protein AURANDRAFT_62766 [Aureococcus anophagefferens]
          Length = 373

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 35  NDPYVQRAQLEG-WRARSAYKLLQINEKHQI---LQSNRRIVDLGSSPGSWSQVAARITG 90
            D  V  ++ +G   +R+ +KL +  +       L    R+VD+G+SPG WSQ+      
Sbjct: 172 TDDAVIASKRDGHAVSRAYFKLREAADVFGFGARLGDGARVVDVGASPGGWSQLCLERGA 231

Query: 91  S 91
           +
Sbjct: 232 A 232


>gi|89071363|ref|ZP_01158496.1| hypothetical protein OG2516_15874 [Oceanicola granulosus
          HTCC2516]
 gi|89043140|gb|EAR49384.1| hypothetical protein OG2516_15874 [Oceanicola granulosus
          HTCC2516]
          Length = 53

 Score = 48.4 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 6  GSSSRRGLTQKVKN-RSCQGSSRDWLNRHINDPYVQRAQLEG-WRAR 50
          G S  RG+T KVK  R  + SSR WL R +NDPYV+  +     RAR
Sbjct: 4  GRSDSRGMTVKVKKKRGLKLSSRRWLERQLNDPYVRAPRPTATARAR 50


>gi|253576737|ref|ZP_04854064.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843947|gb|EES71968.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 459

 Score = 48.4 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 30/144 (20%)

Query: 43  QLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           + EG  +R+ +KLL+      I  +S    +D+G++PG W+        +      V A+
Sbjct: 294 KEEGQISRAKFKLLEAEATFGIPFESFHEALDIGAAPGGWTSFLLERGLN------VTAV 347

Query: 102 DILDMEP----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           D   + P       + F + +           +      DL++ DM        K+    
Sbjct: 348 DTAKLHPSLLSSPKLTFLQRN-------ANRVKFKENQFDLLVCDM----SWSPKLTAKL 396

Query: 158 TMSLCEAATFFALEMLNIGGDFLV 181
              L  A        L  GG  +V
Sbjct: 397 VTELLYA--------LVPGGTAIV 412


>gi|228906474|ref|YP_932513.2| putative RNA 2'-O-ribose methyltransferase [Azoarcus sp. BH72]
          Length = 353

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 13/75 (17%)

Query: 40  QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           +        +RS  KL +         E+  +L++  R VDLG++PG W+   A+     
Sbjct: 176 RLRMPSNAPSRSTLKLAEAIMTLLSDEERDSLLRAGMRAVDLGAAPGGWTWQLAQR---- 231

Query: 93  ANNTRVVAIDILDME 107
               RV AID   + 
Sbjct: 232 --GIRVTAIDNGPLR 244


>gi|166199434|sp|A1K471|RLMM_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|119669713|emb|CAL93626.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 364

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 13/75 (17%)

Query: 40  QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           +        +RS  KL +         E+  +L++  R VDLG++PG W+   A+     
Sbjct: 187 RLRMPSNAPSRSTLKLAEAIMTLLSDEERDSLLRAGMRAVDLGAAPGGWTWQLAQR---- 242

Query: 93  ANNTRVVAIDILDME 107
               RV AID   + 
Sbjct: 243 --GIRVTAIDNGPLR 255


>gi|302878038|ref|YP_003846602.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
           capsiferriformans ES-2]
 gi|302580827|gb|ADL54838.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
           capsiferriformans ES-2]
          Length = 488

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 28/115 (24%)

Query: 35  NDPY---------VQRAQLEGWRARSAYKLLQ-IN------EKHQILQSNRRIVDLGSSP 78
           +DPY          +++      +RS  KL + I+      E+ ++L+S    VDLG++P
Sbjct: 294 SDPYNSADALMGISRQSMPAEAPSRSTLKLAEAIDVFMDKGEQSRLLRSGMTAVDLGAAP 353

Query: 79  GSWS-QVAARITGSNANNTRVVAIDILDMEPI----LGVKFFKFDFLDLDSWEFI 128
           G W+ Q+  R         RV A+D   M+ +      V+    D       + +
Sbjct: 354 GGWTWQMVKRGM-------RVTAVDNGPMKGVLAKNPAVEHLMQDGFKFTPRKAV 401


>gi|226377836|ref|YP_002790882.1| polyprotein [Kedougou virus]
 gi|54399538|gb|AAV34156.1| polyprotein [Kedougou virus]
          Length = 3408

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 15/177 (8%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL  + E+   +    R+VDLG   G WS  AA     +            + EP
Sbjct: 2564 SRGTAKLAWMAER-GFVDLKGRVVDLGCGRGGWSYYAASQKKVHEVAGFTKGGPGHE-EP 2621

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            I+ V+ + ++ + + S   +        D +L D+   +     ++  RT          
Sbjct: 2622 IM-VQSYGWNIVRMKSGIDVHYLPVQPADTLLCDIGESSSN-PGVEEART----LKVLEL 2675

Query: 169  ALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHF--QKVIHVKPVASRAESVEMFLL 221
                +  G  F VK F        + L  L+++F    V    P+ SR  + EM+ +
Sbjct: 2676 VENWIKPGTSFCVKVFCPYMPKVLEKLESLQRNFGGGLVRC--PL-SRNSTYEMYWV 2729


>gi|260465488|ref|ZP_05812678.1| Methyltransferase type 11 [Mesorhizobium opportunistum WSM2075]
 gi|259029792|gb|EEW31078.1| Methyltransferase type 11 [Mesorhizobium opportunistum WSM2075]
          Length = 294

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   R++D G   G +  + AR  G +     + A+D+   E I  V+        L  
Sbjct: 56  IRPGWRVLDAGCGSGGFLPLIARAVGPSGF---IAALDLAP-ENIARVEALAG---TLSG 108

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
              I   +G    L  SD ++  +    +    T +  E A   A  +L  GG F VK F
Sbjct: 109 PPEIATHVGSILSLPFSDASFDCVWSGNVMQYLTPAEFELAVGEARRVLKPGGIFAVKDF 168

Query: 185 QG 186
             
Sbjct: 169 DS 170


>gi|20177456|ref|NP_619758.1| polyprotein [Modoc virus]
 gi|18958163|emb|CAC82912.1| polyprotein [Modoc virus]
          Length = 3374

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 13/177 (7%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL  I+E+  +      +VDLG   G WS  AA     N    +   +     E 
Sbjct: 2533 SRGTAKLAWIDERGGVELKG-SVVDLGCGRGGWSYYAASQ--PNVREVKAYTLGTSGHEK 2589

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
               V+ F ++ +   S   +R+      D VL D+         ++  RT          
Sbjct: 2590 PRLVETFGWNLITFKSKVDVRKMEPFQADTVLCDIGESN-PTAAVEASRT----LTVLNV 2644

Query: 169  ALEML--NIGGDFLVKTFQGGTTNDILCLLK--KHFQKVIHVKPVASRAESVEMFLL 221
                L  N G  F VK     + + +  L+K  + F   +   P+ SR  + EM+ +
Sbjct: 2645 ISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQRRFGGGLIRVPL-SRNSTHEMYFV 2700


>gi|282163383|ref|YP_003355768.1| hypothetical protein MCP_0713 [Methanocella paludicola SANAE]
 gi|282155697|dbj|BAI60785.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 215

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAI 101
            EG+     +KL  I E   IL+    ++D+GSS G +   A+ I         +R    
Sbjct: 56  PEGY-----FKLKGIQEASGILRPGDVVLDIGSSAGGFLMFASGIASRVVGIEFSREFLE 110

Query: 102 DILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
            + ++E    GVK    D     ++     A+GG  D++L+DM
Sbjct: 111 PLSNVEKEYPGVKVMFGD-----AFRMDLAALGGPYDVILNDM 148


>gi|310799789|gb|EFQ34682.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 328

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 16/115 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L     I+DLG+ PG W    A +   N+    +    I   E      F   D    + 
Sbjct: 83  LTRGAEILDLGTGPGHWPIELADL-NPNSTFLGIDLSPIQPHEVPPNCHFMVDDIEHENG 141

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           W+  R             + +     R    L            A E L  GG F
Sbjct: 142 WDLDRDHFD------FIHLRHTLHSVRNRPELMQ---------RAYEHLKPGGWF 181


>gi|302856385|ref|XP_002959586.1| hypothetical protein VOLCADRAFT_101083 [Volvox carteri f.
           nagariensis]
 gi|300254840|gb|EFJ39349.1| hypothetical protein VOLCADRAFT_101083 [Volvox carteri f.
           nagariensis]
          Length = 136

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F KV+  KP  S+  + E++++ KGFR
Sbjct: 87  CLFDKVLVYKPATSKPANSEVYVVGKGFR 115


>gi|212636360|ref|YP_002312885.1| hypothetical protein swp_3607 [Shewanella piezotolerans WP3]
 gi|212557844|gb|ACJ30298.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 238

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 32/172 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E+   L S  R VDLG+ PG W+    R          V 
Sbjct: 60  APSRSTLKLDEAFIHFIPKDEQETRLSSGMRAVDLGACPGGWTYQLVRR------GMFVA 113

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 114 AVDNGPMDEKLMETGQVKHYQADGFRFEPPRKNITWLVCDMIEKPARVAELVEAWAINGW 173

Query: 152 KIDHLRTMSLCEAA--------TFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             + +  + L   A             ++L   G   +K F     +     
Sbjct: 174 FKEAIFNLKLPMKARYKEVTTILDTMADILKENG---IKDFSMAAKHLYHDR 222


>gi|89888079|ref|YP_512254.1| large protein [Beilong virus]
 gi|73747812|gb|AAZ82812.1| large protein [Beilong virus]
          Length = 2172

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 119  FLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              D++ + ++  ++  +   LV +DM        +   L  +     +   A+ +    G
Sbjct: 1843 VGDMECFSYLMNSVEAHTLALVHNDMESSLEKSPETILLEQVH----SLCIAVNLTKDDG 1898

Query: 178  DFLVKT--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++ K     G  ++ +L LL  +F +V    P  S + S E +L+  G +
Sbjct: 1899 LYITKVAPRSGDMSHILLSLLYHYFSEVTCFIPAYSNSCSPECYLVCSGKK 1949


>gi|25121731|ref|NP_740267.1| non-structural protein 5 [Modoc virus]
          Length = 898

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 13/177 (7%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL  I+E+  +      +VDLG   G WS  AA     N    +   +     E 
Sbjct: 57  SRGTAKLAWIDERGGVELKG-SVVDLGCGRGGWSYYAASQ--PNVREVKAYTLGTSGHEK 113

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
              V+ F ++ +   S   +R+      D VL D+         ++  RT          
Sbjct: 114 PRLVETFGWNLITFKSKVDVRKMEPFQADTVLCDIGESN-PTAAVEASRT----LTVLNV 168

Query: 169 ALEML--NIGGDFLVKTFQGGTTNDILCLLK--KHFQKVIHVKPVASRAESVEMFLL 221
               L  N G  F VK     + + +  L+K  + F   +   P+ SR  + EM+ +
Sbjct: 169 ISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQRRFGGGLIRVPL-SRNSTHEMYFV 224


>gi|319784706|ref|YP_004144182.1| RNA-binding S4 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170594|gb|ADV14132.1| RNA-binding S4 domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 254

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           +G+ +R+A KL+   +   +  + R  +D+G+S G ++QV      ++     V      
Sbjct: 65  QGYVSRAALKLIGGLDHFGLDPAGREALDIGASTGGFTQVLLERGVAHVTAVDVGHGQMH 124

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
            D+     V   +     L++ +     +GG  PD ++SD++
Sbjct: 125 PDIGGDPRVTVIEG----LNARDLAVTDLGGRIPDFIVSDVS 162


>gi|297539963|gb|ACV04605.2| polyprotein [Nakiwogo virus]
          Length = 3373

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 15/219 (6%)

Query: 7    SSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ 66
             S   GL  + K    Q S R ++   +    V       + +R   K+ ++  KH   +
Sbjct: 2488 KSDTGGLGFRWKKSLNQLSERQFMAYKVRG--VNETDKGDYVSRGGLKMNELINKHG-WE 2544

Query: 67   SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
                 VDLG   G WSQ               +  +  +       K +    L      
Sbjct: 2545 PRGTAVDLGCGRGGWSQRLVMDHRVAEVKGFTLGGNNRENPQPFQTKGYNLANLKAGVD- 2603

Query: 127  FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML--NIGGDFLVKTF 184
                A+       +      +     ++  RTM           + L  N G  F  K  
Sbjct: 2604 --VHALKPFSCNTIICDIGESDARPDVERTRTM----KVLNLLEQWLNENPGAAFCCKVL 2657

Query: 185  QGGTTNDILCL--LKKHFQKVIHVKPVASRAESVEMFLL 221
                   +  L  L+  +     V+   SR  + EM+ +
Sbjct: 2658 SPYHLEVLRKLEALQHKYDG-RLVRLSYSRNSTAEMYYI 2695


>gi|325926036|ref|ZP_08187400.1| putative SAM-dependent methyltransferase [Xanthomonas perforans
           91-118]
 gi|325543562|gb|EGD14981.1| putative SAM-dependent methyltransferase [Xanthomonas perforans
           91-118]
          Length = 347

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEERDALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|78046480|ref|YP_362655.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|123585802|sp|Q3BX58|RLMM_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|78034910|emb|CAJ22555.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 347

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEERDALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|42522232|ref|NP_967612.1| methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39574763|emb|CAE78605.1| methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 300

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 34/165 (20%)

Query: 48  RARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            +R+  KL ++   + I  +  +R+VD GS PG W+ V   +         VV+ID   +
Sbjct: 143 PSRAYLKLWELFTVYGIKPKKGQRVVDFGSCPGGWTWVLQTVGCE------VVSIDRAPL 196

Query: 107 EP----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD-MAYPTIGHRKIDHLRTMSL 161
           EP    + GVKF K +  ++   +       G  D   SD + YP      + + +   L
Sbjct: 197 EPHIAALPGVKFMKTNAFNVKPEDI------GAIDWFFSDIICYPEKLLELVQNWQASGL 250

Query: 162 CEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCLLKKHFQKVIH 205
           C               +F+    FQG T  + L       + V  
Sbjct: 251 CS--------------NFVCTIKFQGKTDYETLKKFLAL-ENVRI 280


>gi|325916858|ref|ZP_08179106.1| putative SAM-dependent methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536903|gb|EGD08651.1| putative SAM-dependent methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 347

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+ ++++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLAPEERERLVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|21241659|ref|NP_641241.1| RNA 2'-O-ribose methyltransferase [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|81804699|sp|Q8PNZ9|RLMM_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|21107022|gb|AAM35777.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 347

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEERDALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|118589267|ref|ZP_01546673.1| hemolysin-like protein [Stappia aggregata IAM 12614]
 gi|118437967|gb|EAV44602.1| hemolysin-like protein [Stappia aggregata IAM 12614]
          Length = 246

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           G+ +R+A KL++  ++  +  + R  +D+G+S G ++QV         +   V
Sbjct: 59  GYVSRAALKLIEGLDRFGVDPAGRICLDIGASTGGFTQVLLERGADKVHAIDV 111


>gi|226349463|ref|YP_002776577.1| putative methyltransferase [Rhodococcus opacus B4]
 gi|226245378|dbj|BAH55725.1| putative methyltransferase [Rhodococcus opacus B4]
          Length = 221

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 12/119 (10%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
               ++D+G   G +S+ AAR         RVV ID     P   V     D+    S  
Sbjct: 56  PGDEVLDIGCGTGYFSRRAARAVLPGG---RVVGID-----PSPPVI----DYARRVSPP 103

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
                + G   L L D +   +      H     L   A   A  +L  GG   +  F+
Sbjct: 104 HCTFRLAGAEALPLYDASMDLVISSLAVHHIPPELRATALREAFRVLRPGGRLFIADFR 162


>gi|294625777|ref|ZP_06704396.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599947|gb|EFF44065.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 344

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 177 APSRSALKLDEALLTLLTPEERDALVKPGMRAADLGAAPGGWTWVLTRQH 226


>gi|294664497|ref|ZP_06729845.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605730|gb|EFF49033.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 347

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEERDALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|62421412|gb|AAX82481.1| polyprotein [Alfuy virus]
          Length = 3434

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 43/245 (17%)

Query: 3    KPP---GSSSRRGLTQKVKNRSCQGSSRDW--------LNRHINDPYVQRAQLEGWR--- 48
            KP    GS+  R L ++ K+R  Q S  ++        +     D   ++A+  G     
Sbjct: 2524 KPTFKRGSAGGRTLGEQWKDRLNQLSKEEFFQYRKEAIIEVDRTDA--RKARKAGNVTGG 2581

Query: 49   ---ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA--RITGSNANNTRVVAIDI 103
               +R   KL  + E+ Q L    R+VDLG   G WS  AA  +        T+  A   
Sbjct: 2582 HPVSRGTAKLRWLVER-QFLNPVGRVVDLGCGRGGWSYYAATMKRVQEVRGYTKGGAGHE 2640

Query: 104  LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH-------L 156
              M     ++ + ++ + L S   +        D +L D+          +H       +
Sbjct: 2641 EPML----MQSYGWNIVSLKSGVDVFYRPSEVSDTLLCDIGESASSAEVEEHRTLRILEM 2696

Query: 157  RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
             +  L      F +++L     ++ K        + +  L++ F   +   P+ SR  S 
Sbjct: 2697 VSDWLSRGPREFCIKVLCP---YMPKVI------EKMEQLQRRFGGGLVRVPL-SRNSSH 2746

Query: 217  EMFLL 221
            EM+ +
Sbjct: 2747 EMYWV 2751


>gi|13476217|ref|NP_107787.1| hemolysin-like protein [Mesorhizobium loti MAFF303099]
 gi|14026977|dbj|BAB53573.1| hemolysin-like protein [Mesorhizobium loti MAFF303099]
          Length = 254

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           +G+ +R+A KL+   +   +  + R  +D+G+S G ++QV      S+     V      
Sbjct: 65  QGYVSRAALKLIGGLDHFSLDPAGREALDIGASTGGFTQVLLERGASHVIAIDVGHGQMH 124

Query: 104 LDMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            D+     V   +  +  DL + +      G NPD ++SD++
Sbjct: 125 PDVGKDPRVTVVEGLNARDLTAADL----AGRNPDFIVSDVS 162


>gi|21230290|ref|NP_636207.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769716|ref|YP_244478.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188992932|ref|YP_001904942.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|81304330|sp|Q4UR65|RLMM_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|81796273|sp|Q8PCB8|RLMM_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705378|sp|B0RUG0|RLMM_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|21111838|gb|AAM40131.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575048|gb|AAY50458.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734692|emb|CAP52902.1| Conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 347

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+ Q+++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREQLVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|327401288|ref|YP_004342127.1| RNA-binding S4 domain-containing protein [Archaeoglobus veneficus
           SNP6]
 gi|327316796|gb|AEA47412.1| RNA-binding S4 domain protein [Archaeoglobus veneficus SNP6]
          Length = 218

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 29/178 (16%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           R R  +KL +I+ + +I+  N  ++DLGSS G +   A+          +V  I+    E
Sbjct: 55  RPRGYWKLAEIDARWKIIDKNDIVLDLGSSAGGFLLYASERAK------KVYGIEFSR-E 107

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
               ++  + D       + +R  IG       S +    +    +    + SL   A  
Sbjct: 108 FEEELRKIESD------RKNVRVFIGDAFTFDTSMLEPLDVILDDLTLEPSASL--KALS 159

Query: 168 FALEMLNIGGD--FLVKTFQGGTTNDI----------LCLLKKHFQKVIHVK--PVAS 211
             L +L  GG   F++K  +     +               +K+F  +   K  P AS
Sbjct: 160 RFLPLLKDGGRVLFVMKEGKNPEFEEYGLEVVDVIDSSERREKYFLLIKSCKVPPSAS 217


>gi|124481934|gb|ABN11818.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT          A E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMAEEWLKKGATEFCIKVLCPYMPKIVEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|118573113|sp|Q1X880|POLG_YEFVU RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|63147729|gb|AAY34248.1| polyprotein [Yellow fever virus]
          Length = 3412

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2563 SRGTAKLRWFHER-GYVKLEGRVMDLGCGRGGWCYYAAAQKEVSGVKGYTLGRDGH--EK 2619

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      + +L D+   +      +  RT          
Sbjct: 2620 PMNVQSLGWNIVTFKDKTDIHRLEPAKCETLLCDIG-ESSPSSVTEGERT----LRVLET 2674

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G  +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2675 VEKWLACGVDNFCVKVLAPYMPDVIEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2729


>gi|255311732|pdb|2WA1|A Chain A, Structure Of The Methyltransferase Domain From Modoc
           Virus, A Flavivirus With No Known Vector (Nkv)
 gi|255311733|pdb|2WA1|B Chain B, Structure Of The Methyltransferase Domain From Modoc
           Virus, A Flavivirus With No Known Vector (Nkv)
 gi|255311734|pdb|2WA2|A Chain A, Structure Of The Methyltransferase Domain From Modoc
           Virus, A Flavivirus With No Known Vector (Nkv)
 gi|255311735|pdb|2WA2|B Chain B, Structure Of The Methyltransferase Domain From Modoc
           Virus, A Flavivirus With No Known Vector (Nkv)
          Length = 276

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 13/177 (7%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL  I+E+  +      +VDLG   GSWS  AA     N    +   +     E 
Sbjct: 65  SRGTAKLAWIDERGGVELKG-TVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEK 121

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
              V+ F ++ +   S   + +      D VL D+         ++  RT          
Sbjct: 122 PRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIGESN-PTAAVEASRT----LTVLNV 176

Query: 169 ALEML--NIGGDFLVKTFQGGTTNDILCLLKK--HFQKVIHVKPVASRAESVEMFLL 221
               L  N G  F VK     + + +  L+K    F   +   P+ SR  + EM+ +
Sbjct: 177 ISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARFGGGLIRVPL-SRNSTHEMYFV 232


>gi|311977903|ref|YP_003987023.1| hypothetical protein MIMI_gp0550 [Acanthamoeba polyphaga mimivirus]
 gi|82000090|sp|Q5UQ71|YL511_MIMIV RecName: Full=Uncharacterized protein L511
 gi|55417125|gb|AAV50775.1| unknown [Acanthamoeba polyphaga mimivirus]
 gi|308204444|gb|ADO18245.1| putative FtsJ-like methyltransferase [Acanthamoeba polyphaga
           mimivirus]
          Length = 788

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 63/209 (30%), Gaps = 39/209 (18%)

Query: 51  SAYKLLQINEKH-QILQSNRRIVD--LGSSPGSWSQVAARITGSNANNTRVVAIDILDM- 106
           +  KL +I  +   I+     +    L  +PG++         S        A  +  M 
Sbjct: 490 AWIKLYEILNEFPDIIPKKESVKSFHLCEAPGAFVSATHHYMYSLGCELDWYAQTLNPMY 549

Query: 107 -----EPILGVKFF-------------KFDFLDLDSWEFI--------RQAIGGNPDLVL 140
                +   G+                  D    +  +             + G+  +  
Sbjct: 550 ENKALDDHYGLMSLYPDKWLFGSKNNNTGDITSSEIIKSYASNKQLSNIDFMTGDAGIYC 609

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG---GTTNDILCLLK 197
                  +  ++    +            L  L+ G   + KTF          +L LL 
Sbjct: 610 ---RPNCLNEQETVMAKI---NMGQIVCILACLSKGRSAVFKTFLPLTEPLNISLLNLLS 663

Query: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F+++I  KP AS   + E++++ K ++
Sbjct: 664 SIFEELIFYKPGASNGSNSEIYIVLKSYK 692


>gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
 gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
          Length = 465

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 23/154 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPIL---GVKFFKF 117
           +    +VDL ++PG  +   A +     N  ++ A DI +     M+ IL   GV   K 
Sbjct: 272 KPGMTVVDLAAAPGGKTSHIAELM---RNKGKIYAFDIDEFRIKRMKEILKRMGVNIVKI 328

Query: 118 DFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAATFF 168
              D   + + + + I     L     +  TIG         R+   L    L +     
Sbjct: 329 IRKDGRKAPKILGRGIADRVLLDAPCTSSGTIGKNPELRWRLRENKILEIAELQKDLLKV 388

Query: 169 ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
           A ++L  GG  L      F      +I   L  +
Sbjct: 389 AAQLLKPGGRLLYATCSLFPEENEENIEWFLGTY 422


>gi|212529028|ref|XP_002144671.1| TAM domain methyltransferase, putative [Penicillium marneffei ATCC
           18224]
 gi|210074069|gb|EEA28156.1| TAM domain methyltransferase, putative [Penicillium marneffei ATCC
           18224]
          Length = 325

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 27/130 (20%)

Query: 56  LQINE-KHQI--LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---I 109
            QIN+ K     L+  +RI+D+G+  G W         S+     ++  D+  ++P    
Sbjct: 60  KQINDNKLHFAPLRDPKRILDIGTGSGIWPIE----MASHFPEASIIGTDLSPVQPTEVP 115

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V F   D  +        + +          +   T                     A
Sbjct: 116 PNVHFLVEDATE--------EWLWEPNHFDYIRIGNMTGCLPSTKD---------VLKKA 158

Query: 170 LEMLNIGGDF 179
           + +L  GG F
Sbjct: 159 MRVLKPGGWF 168


>gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 431

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 26/133 (19%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME----PILGVKFFKFDFLD 121
           +    +VDL ++PG  +   A++         ++AID+             +F   D ++
Sbjct: 237 EPGMTVVDLCAAPGGKTTHLAQLMEGRGE---IIAIDMHPKRFGTLKKRVRQFHADDIVE 293

Query: 122 ---LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH--------------LRTMSLCEA 164
              +D+ +   Q   G  DLVL D   P  G   +                 +   L   
Sbjct: 294 TLCMDARDAPDQLGEGIADLVLVD--PPCTGTGSVYSKPEKRWDRETTGEPTKWAQLQWE 351

Query: 165 ATFFALEMLNIGG 177
               A+ +L  GG
Sbjct: 352 LLKVAVRLLKPGG 364


>gi|49475233|ref|YP_033274.1| hemolysin-like protein [Bartonella henselae str. Houston-1]
 gi|49238038|emb|CAF27245.1| Hemolysin-like protein [Bartonella henselae str. Houston-1]
          Length = 249

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL+   +   I+      +D+G+S G ++QV       +     V+A+D+ 
Sbjct: 59  QNYVSRAALKLMGALDAFPIVTDKVTAIDIGASTGGFTQVLLERGAEH-----VIAVDVG 113

Query: 105 DMEPILGVKFFKFDFLDLD---SWEFIRQAIGGN-PDLVLSD-------MAYPTIGHRKI 153
             + +    F       L+     +  ++ +GG   DL++SD       +A P +     
Sbjct: 114 HNQ-LDARLFGNSAITLLEGLNVRDLKQEHLGGREIDLIVSDVSFISLKLALPPVLSLAK 172

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDF 179
              + + L +       E L+ GG  
Sbjct: 173 QGAQAVLLVKPQFEIGREFLSKGGIL 198


>gi|86609471|ref|YP_478233.1| hypothetical protein CYB_2023 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558013|gb|ABD02970.1| hypothetical protein CYB_2023 [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 315

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           +RS +KLL+  +  QI L    + +DLG++PG WS++  R+ G      +V A+D  D++
Sbjct: 154 SRSEFKLLEAIQVFQIPLVPGGQALDLGAAPGGWSRIL-RLYGQ-----QVTAVDPADLD 207

Query: 108 P 108
            
Sbjct: 208 E 208


>gi|296816931|ref|XP_002848802.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238839255|gb|EEQ28917.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 363

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 34/188 (18%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA---------IDILDMEPILGV----- 112
              +++D+  +PG +S  A R    ++     +          +     +P   V     
Sbjct: 95  KGFKVLDICMAPGGYSATALRYNKHSSIYGLSLPEEEGGHEMLLQNWQKDPRFDVRLMDI 154

Query: 113 KFFKFDFLDLDSWEF----------IRQAIGGNPDLVLSDMAYPTIGHRKIDH-LRTMSL 161
                +F   D               R   G   DLV  D        R +        L
Sbjct: 155 TMLSTEFGSPDLLPADNPLASQFSSCRPFDGLEADLVFCDGQVLRTHERAVGSKFEASRL 214

Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH--FQKVIHVKP---VASRAESV 216
             A    AL+ +  GG  +V           + LL     F ++   KP    A+R    
Sbjct: 215 TSAQLILALQRIKKGGT-MVMLLHRVNNPRNVKLLHAFSQFAEIDLFKPTPSHAARNSF- 272

Query: 217 EMFLLAKG 224
             +L+AK 
Sbjct: 273 --YLVAKN 278


>gi|15837350|ref|NP_298038.1| putative RNA 2'-O-ribose methyltransferase [Xylella fastidiosa
           9a5c]
 gi|81547995|sp|Q9PFD0|RLMM_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|9105638|gb|AAF83558.1|AE003916_12 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 351

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +        NE+   L+   R  DLG++PG W+ V  R         RV 
Sbjct: 182 APSRSALKLEEALITLLTSNEREAKLRPGMRATDLGAAPGGWTWVLIRQH------LRVT 235

Query: 100 AIDILDMEP 108
           +ID   + P
Sbjct: 236 SIDNAVLRP 244


>gi|221481830|gb|EEE20200.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1028

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAE 214
           L  +    A ++L  GG F+   F      T  +L L    F++V  VKP  SR  
Sbjct: 88  LLLSEFLIAFQLLQHGGTFICTVFDSFTSFTASLLFLCIALFEEVYIVKP--SRNR 141


>gi|237843343|ref|XP_002370969.1| hypothetical protein TGME49_016610 [Toxoplasma gondii ME49]
 gi|211968633|gb|EEB03829.1| hypothetical protein TGME49_016610 [Toxoplasma gondii ME49]
 gi|221502329|gb|EEE28062.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 1028

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAE 214
           L  +    A ++L  GG F+   F      T  +L L    F++V  VKP  SR  
Sbjct: 88  LLLSEFLIAFQLLQHGGTFICTVFDSFTSFTASLLFLCIALFEEVYIVKP--SRNR 141


>gi|71275159|ref|ZP_00651446.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71898240|ref|ZP_00680414.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|170731150|ref|YP_001776583.1| putative RNA 2'-O-ribose methyltransferase [Xylella fastidiosa M12]
 gi|226705380|sp|B0U5D5|RLMM_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|71163968|gb|EAO13683.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71731979|gb|EAO34036.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|167965943|gb|ACA12953.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 351

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 17/85 (20%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +        NE+   L+   +  DLG++PG W+ V  R         RV 
Sbjct: 182 APSRSALKLEEALITLLTPNEREAKLRPGMQATDLGAAPGGWTWVLIRQH------LRVT 235

Query: 100 AIDILDMEPI----LGVKFFKFDFL 120
           +ID   + P       V+  + D  
Sbjct: 236 SIDNAALRPPLLNHPLVQHVRADGF 260


>gi|192359645|ref|YP_001982842.1| putative RNA 2'-O-ribose methyltransferase [Cellvibrio japonicus
           Ueda107]
 gi|226705352|sp|B3PKB3|RLMM_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|190685810|gb|ACE83488.1| hypothetical protein CJA_2381 [Cellvibrio japonicus Ueda107]
          Length = 350

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 21/107 (19%)

Query: 40  QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGS 91
           +    +   +R+  KL +         +  + L    R VDLG++PG W+ Q+  R    
Sbjct: 173 RLRLPKSAPSRATLKLEEAWHHFIPAADWDRRLAPGMRAVDLGAAPGGWTWQLVQRSIYV 232

Query: 92  NANNTRVVAIDILD-------------MEPILGVKFFKFDFLDLDSW 125
            A +   +  D+LD              EP   V +   D +D  + 
Sbjct: 233 EAIDNGPMDKDLLDSGLVTHVLADGFLFEPKKPVDWLVCDIVDKPAR 279


>gi|212535834|ref|XP_002148073.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210070472|gb|EEA24562.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 323

 Score = 45.7 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 46/167 (27%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSWE 126
           +++D+G   G W+ +   +  S      V+  D+  ++P      VKF+  D  D  +++
Sbjct: 89  KVLDIGCGTGEWAVMVGEMFPS----ATVIGTDLSPIQPTLVPPNVKFYVEDAEDEWTFD 144

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-----FLV 181
                I G       D              R           A   L  GG      F  
Sbjct: 145 KGFDLIHGRMLAGSIDD--------WTKFFRQ----------AFGQLKPGGWIEMNEFEA 186

Query: 182 KTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +   Q G  +D L +L K F K           +S   F   KGF
Sbjct: 187 MFYYRDQNGEQSDQLNMLVKVFNK-----------QSSTAF--GKGF 220


>gi|255727396|ref|XP_002548624.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134548|gb|EER34103.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 382

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 55  LLQINEKHQILQSN-RRIVDLGSSPGSWSQVAARITGS--NANNTRV------VAIDILD 105
           +  ++ +  IL  + RRI+DLG  PG+W            N +  +V      +  D + 
Sbjct: 64  IKHLDRRFNILNGSHRRILDLGYVPGNWITYIRNRMAKIHNIDPDKVNKKCHILGFDFMF 123

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             P  GV   + +     +   I         + L   +
Sbjct: 124 GAPPAGVSAIQGNIFSKSAQSLIIDYFKEAAWMELKHKS 162


>gi|224373114|ref|YP_002607486.1| hemolysin A [Nautilia profundicola AmH]
 gi|223589777|gb|ACM93513.1| hemolysin A [Nautilia profundicola AmH]
          Length = 236

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           Q +G+ +R+AYKL    +KH I   N+ ++D+GSS G ++QVA           +VV++D
Sbjct: 52  QNDGYVSRAAYKLKNYLQKHGINFENKTVLDIGSSTGGFTQVALE-----EGAQKVVSVD 106

Query: 103 I 103
           +
Sbjct: 107 V 107


>gi|145492463|ref|XP_001432229.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399339|emb|CAK64832.1| unnamed protein product [Paramecium tetraurelia]
          Length = 292

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 32/130 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPI 109
           +   L+    ++DLGS  G+   +A    G +    RV+ +D+                I
Sbjct: 93  EFAELKKGDVVLDLGSGAGNDCFIAKAQVGESG---RVIGVDMTPSMIRKAQLNSDKYNI 149

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V+F + D  D+         +    D+V+S+     +  ++                 
Sbjct: 150 RNVEFRQGDITDIPV-------LDNYVDVVISNCVINLVPDKRKVFSEIH---------- 192

Query: 170 LEMLNIGGDF 179
             +L   G F
Sbjct: 193 -RVLKQNGHF 201


>gi|118573111|sp|Q074N0|POLG_YEFVE RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|81249972|gb|ABB69689.1| polyprotein [Yellow fever virus]
          Length = 3412

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2563 SRGTAKLRWFHER-GYVKLEGRVMDLGCGRGGWCYYAAAQKEVSGVKGYTLGRDGH--EK 2619

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      + +L D+   +      +  RT          
Sbjct: 2620 PMNVQSLGWNIVTFKDKTDIHRLEPAKCETLLCDIG-ESSPSSVTEGERT----LRVLET 2674

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G  +F VK          + L LL++ F   I   P+ SR  + EM+ +
Sbjct: 2675 IEKWLACGVDNFCVKVLAPYMPDVIEKLELLQRRFGGTIIRNPL-SRNSTHEMYYV 2729


>gi|81942035|sp|Q6J3P1|POLG_YEFVC RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|47176660|gb|AAT12476.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R+ DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVTDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +      +  RTM         
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPMKCDTLLCDIGESSSS-SVTEGERTM----RVLDT 2673

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G  +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2674 VEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|87120481|ref|ZP_01076375.1| hypothetical protein MED121_22027 [Marinomonas sp. MED121]
 gi|86164124|gb|EAQ65395.1| hypothetical protein MED121_22027 [Marinomonas sp. MED121]
          Length = 350

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 13/83 (15%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQ-------ILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           +        +RS  KL +   +         +L+     VDLG++PG W+          
Sbjct: 173 RLRFPANAPSRSTLKLEEAMHEFVPAKKWPVLLREGMTAVDLGAAPGGWTYQLVER---- 228

Query: 93  ANNTRVVAIDILDMEPILGVKFF 115
               RV AID   M  +L     
Sbjct: 229 --GMRVTAIDNGPMGELLMATGL 249


>gi|319787999|ref|YP_004147474.1| RNA 2'-O-ribose methyltransferase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466511|gb|ADV28243.1| putative RNA 2'-O-ribose methyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 351

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +         E+ + L+      DLG++PG W+ V  R      ++ RV 
Sbjct: 183 APSRSALKLEEAFLALLGPEERERQLKPGMTAADLGAAPGGWTWVLTR------HHLRVT 236

Query: 100 AIDILDME 107
           ++D   + 
Sbjct: 237 SVDNGPLR 244


>gi|70724978|gb|AAZ07885.1| polyprotein precursor [Yellow fever virus]
          Length = 3411

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSITEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|253508839|gb|ACT31739.1| polyprotein [St. Louis encephalitis virus]
          Length = 3429

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2564 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2621

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2622 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2673

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT          A E L  G   F +K          + L  L++ +   
Sbjct: 2674 NPSC-EVEEARTA----RVLDMAEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2728

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2729 LVRVPL-SRNSTHEMYWV 2745


>gi|124481918|gb|ABN11810.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT          A E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMAEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481928|gb|ABN11815.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT          A E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMAEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRAPL-SRNSTHEMYWV 2746


>gi|124481950|gb|ABN11826.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT          A E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMAEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|11499766|ref|NP_071009.1| hypothetical protein AF2184 [Archaeoglobus fulgidus DSM 4304]
 gi|2648341|gb|AAB89068.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 23/146 (15%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILD 105
           R R  +KL +I+E   +   N  ++DLGSS G +   A+           +R     + +
Sbjct: 55  RPRGYWKLKEIDEHFNLFSGNEVVLDLGSSAGGFLLYASEKAKEVYGIEYSREFEEGLRE 114

Query: 106 MEPI-LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           +E     VK F  D    D       ++    DL+L+D+  P                  
Sbjct: 115 IERQRPNVKVFIADAFTFDI------SLLPELDLILNDLTLPFSS------------SFR 156

Query: 165 ATFFALEMLNIGGD--FLVKTFQGGT 188
           A    L +L  GG   F+ K   G +
Sbjct: 157 AMRRFLPLLKKGGIVLFVHKEGDGES 182


>gi|269792512|ref|YP_003317416.1| hemolysin A [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100147|gb|ACZ19134.1| hemolysin A [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 269

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           VQR   E W +R AYKLL+  E  Q+    R  VD+G+S G ++QV  R   S     RV
Sbjct: 51  VQRGTEERWVSRGAYKLLRALEVFQLDPFGRICVDVGASTGGFTQVLLRRGAS-----RV 105

Query: 99  VAIDI 103
            ++D+
Sbjct: 106 YSVDV 110


>gi|325920350|ref|ZP_08182286.1| putative SAM-dependent methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325549170|gb|EGD20088.1| putative SAM-dependent methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 347

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|289663534|ref|ZP_06485115.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289670924|ref|ZP_06491999.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 347

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|122879286|ref|YP_202360.6| putative RNA 2'-O-ribose methyltransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84029360|sp|Q5GWE6|RLMM_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
          Length = 347

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
 gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
          Length = 472

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 31/163 (19%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKF 117
           +    +VDL ++PG  +   A +     N+ R+ A DI  +            G+   + 
Sbjct: 277 KPGMTVVDLAAAPGGKTSHIAELMK---NHGRIYAFDIDRVRIKRMRMILRRMGITIVR- 332

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH------------RKIDHLRTMSLCEAA 165
              + D+ E  R       D VL D A  T               R+      + L    
Sbjct: 333 -IFEKDAREAPRILGEEIADRVLLD-APCTSTGTIAKNPELRWRVREEGLEEIVKLQREM 390

Query: 166 TFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--FQKV 203
              A +++  GG  L            ++I   LK+H  F+ V
Sbjct: 391 LEAAAKLVKPGGRLLYTTCSLLPEENEDNIKWFLKRHSEFKLV 433


>gi|188575397|ref|YP_001912326.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|226705379|sp|B2SPV7|RLMM_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|188519849|gb|ACD57794.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 347

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|84625171|ref|YP_452543.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|123521072|sp|Q2NZK8|RLMM_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|84369111|dbj|BAE70269.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 347

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREALVKPGMRAADLGAAPGGWTWVLTRQH 229


>gi|127513689|ref|YP_001094886.1| putative RNA 2'-O-ribose methyltransferase [Shewanella loihica
           PV-4]
 gi|166199450|sp|A3QGM9|RLMM_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|126638984|gb|ABO24627.1| conserved hypothetical protein [Shewanella loihica PV-4]
          Length = 363

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E+ Q L+S    VDLG+ PG W+ Q+  R     A +   
Sbjct: 183 APSRSTLKLDEAFIHFIPKSEQEQRLRSGMNSVDLGACPGGWTYQLVRRGMFVAAVDNGP 242

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHRKID 154
           +A +++D      V+ ++ D    +  +     +       P  V   M    I     +
Sbjct: 243 MAQNLMDTGQ---VRHYQADGFRFEPPKKNIYWLVCDMVEKPSRVAELMEAWAINGWFKE 299

Query: 155 HLRTMSL--------CEAATFFALEMLNIGG 177
            +  + L                 E+L   G
Sbjct: 300 AIFNLKLPMKSRYKEVSTILATMQEVLRENG 330


>gi|304310839|ref|YP_003810437.1| Predicted SAM-dependent methyltransferase [gamma proteobacterium
           HdN1]
 gi|301796572|emb|CBL44784.1| Predicted SAM-dependent methyltransferase [gamma proteobacterium
           HdN1]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 18/80 (22%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQIL---------QSNRRIVDLGSSPGSWSQVAARI 88
           Y +    +   +RS  KL +      +L         + N+R VDLG++PG W+    + 
Sbjct: 170 YPRLRMPKAAPSRSTLKLEE---AFHVLLGRRSDALPRPNQRAVDLGAAPGGWTWQLIQR 226

Query: 89  TGSNANNTRVVAIDILDMEP 108
                   +V+A+D   + P
Sbjct: 227 ------GVKVIAVDNGPLAP 240


>gi|298705719|emb|CBJ49027.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 411

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +++    +VDLG   G+ ++  A    S     +VV +D+     + G    + D    +
Sbjct: 200 LVEDGGLVVDLGCGSGTSTRYLAEQFPS---AGKVVGVDLSPYMLLTGRFMQQED---EN 253

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           +   +    G      L D +   +    + H  +     +    A  +L  GG 
Sbjct: 254 ADPRVELEYGDAARTGLEDNSASLVSLSLVVHELSTEGRRSILAEAFRILRPGGS 308


>gi|58427938|gb|AAW76975.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 357

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  +++   R  DLG++PG W+ V  R  
Sbjct: 190 APSRSALKLDEALLTLLTPEEREALVKPGMRAADLGAAPGGWTWVLTRQH 239


>gi|150864367|ref|XP_001383147.2| methyltransferase [Scheffersomyces stipitis CBS 6054]
 gi|149385623|gb|ABN65118.2| methyltransferase [Scheffersomyces stipitis CBS 6054]
          Length = 293

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 26/147 (17%)

Query: 60  EKH--QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------ 105
           EK    + +   +++D     G  +             T +V IDI              
Sbjct: 64  EKFPDSVFRPGMKLLDFACGTGLVTMKLPPYLAEKGKTTEIVGIDINPKLLSIFNDKAEK 123

Query: 106 -MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
            +   + +K + +D LD +    +    GG  D ++      TI +  ID  R     E 
Sbjct: 124 HISEEVSIKSYIYDILDPELQPELSAKFGGKFDAIIC-----TISYHHIDSYR-----EV 173

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTND 191
               A E L  GG   +  F       
Sbjct: 174 TKKLA-EFLAPGGWLFIVDFYNEDVEK 199


>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
          Length = 449

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPIL------GVKFFKF 117
           Q    IVDL ++PG  +   A +  +     ++ A DI    M+ +       G+K  K 
Sbjct: 258 QPGEVIVDLAAAPGGKTTHLAELMKNKG---KIYAFDIDKTRMKRLKEFVNRMGIKIVKP 314

Query: 118 DFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAATFF 168
              D   + E + + I     L     +  TIG         R+        L       
Sbjct: 315 IIKDGRKAPEILGEEIADRVLLDAPCTSSGTIGKNPELRWRLRESKIKEMAQLQRELLES 374

Query: 169 ALEMLNIGGDFL---VKTFQGGTTNDILCLL--KKHFQKVIHVKP 208
           A +++  GG  L      F      ++   L   + F+ V    P
Sbjct: 375 AAKLVKPGGLLLYTTCSLFTEENEENVKWFLNNHQEFKLVHLNSP 419


>gi|56206049|emb|CAI19602.1| FtsJ methyltransferase domain containing 2 [Homo sapiens]
          Length = 372

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 22/153 (14%)

Query: 73  DLGSSPGSWSQVA--ARITGSNANNTRVVAIDILDMEPILGV-------------KFFKF 117
           D+ + PG +S+     +   +      +   +   +E                       
Sbjct: 219 DVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDG 278

Query: 118 DFLDLDSWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           D    ++    R  +  N        +++D  +   G   +  + +  L       AL +
Sbjct: 279 DITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSI 338

Query: 173 LNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKV 203
           +  GG F+ KTF      +  ++ LL   F++V
Sbjct: 339 VRTGGHFICKTFDLFTPFSVGLVYLLYCCFERV 371


>gi|145349055|ref|XP_001418956.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579186|gb|ABO97249.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 514

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 43  QLEGWR------ARSAYKLLQINEKHQILQSNR-RIVDLGSSPGSWSQVAARITGSNANN 95
           +L+ +R       R+ +KL +   + ++        VD+G++PG W+QV +         
Sbjct: 324 KLQDYRVEVKPLCRAYFKLHEALLRGRVPIEGDWNCVDIGAAPGGWTQVLSERL----TT 379

Query: 96  TRVVAIDILDMEPILGVKFFKFD-FLDLDSWEFIRQAIG----GNPDLVLSDM-AYPTIG 149
             V AID  ++              L  D+ E +R+ +     G   LV+ D   +P   
Sbjct: 380 GCVWAIDPAEITLNPFPTTMTHLRVLAEDAVETVREGLQSTASGELRLVVCDANMHPEAC 439

Query: 150 HRKIDHLRT-------MSLCEAATFFALE---MLNIGGDFLVKTFQGGTTNDILCLLKKH 199
            R      T         L  +   F       L +    + +    G  +  +  L  +
Sbjct: 440 LRIALDFSTKFSSMKESWLVMSTKNFCKRRENWLKVIDTCIEQCRDAGYDDVFVEHLFSN 499

Query: 200 FQK 202
             +
Sbjct: 500 CSE 502


>gi|188584795|ref|YP_001916340.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349482|gb|ACB83752.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 190

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 54  KLLQINEK--HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG 111
           K  +I+++    ++    R+VD     G  ++  A   G   +   V A DI        
Sbjct: 8   KPTEIDKQLLDGVISQGDRVVDATCGNGHDTEYLANRVG---DQGLVYAFDIQKQALETT 64

Query: 112 VKFFKFDFLDLDSW------EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
            K  + + L           E + + + G    V+ ++ Y     +K+           A
Sbjct: 65  WKRLQQEGLHERVRLLNKGHEKLIEDVEGPVSCVMFNLGYLPGSDKKVVTEPQN--TIRA 122

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
              AL +L  GG   +  + G  T  I   + + +
Sbjct: 123 IEGALSLLKAGGLLTIVLYPGHETGMIESQVVQDY 157


>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           sphaericus C3-41]
 gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           sphaericus C3-41]
          Length = 453

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 34/164 (20%)

Query: 46  GWRAR-SAYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNA-- 93
           G  AR +A+K   + I ++  ++           R++D+ ++PG  +   A I  +    
Sbjct: 225 GQPARTNAFKEGHITIQDESSMIPANVLKPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSI 284

Query: 94  --------------NNTRVVAIDILDMEPILGVK---FFKFDFLDLDSWEFIRQAIGGNP 136
                         +NT  + +DI++  PI G K   F + +  D    +     +G   
Sbjct: 285 LATDLHPHKLDLIDHNTERLGLDIIETAPIDGRKAPEFLQAESYDAILVDAPCSGLGVMR 344

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                D+ Y T     +++L+T+ L       A ++L I G  +
Sbjct: 345 R--KPDIKY-TKREEDLENLQTIQLAL--LDAATKVLKIKGKLV 383


>gi|91772977|ref|YP_565669.1| RNA-binding S4 [Methanococcoides burtonii DSM 6242]
 gi|91711992|gb|ABE51919.1| RNA-binding S4 domain protein [Methanococcoides burtonii DSM 6242]
          Length = 225

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 25/176 (14%)

Query: 53  YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPIL 110
           +KL  I ++  +++    ++DLGSS G +   A+ I         +R    ++  +    
Sbjct: 61  FKLKGIQDETGLIKEGDSVLDLGSSAGGFIVFASEIAADVRGLEFSRDFREELGQIAHER 120

Query: 111 -GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V     D         +        D++LSDM                    AA    
Sbjct: 121 SNVSVMFGDVFTFP----LETMAPEPVDVILSDMTLEPED------------SLAALKRV 164

Query: 170 LEMLNIGGDF--LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
           L +L + G    ++K  +      +L +++    ++ +V  + S  +  E++++A+
Sbjct: 165 LPLLKLDGQLLQVIKMSKRIKREPLLSIMEGLSLEIQNV--LESEKQ--EIYVVAR 216


>gi|53802683|ref|YP_112631.1| putative RNA 2'-O-ribose methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|81683223|sp|Q60CL4|RLMM_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|53756444|gb|AAU90735.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 352

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 44  LEGWRARSAYKLLQ-----INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
                +RS  KL +     ++    +L+     VDLG++PG W+    R         R 
Sbjct: 180 PRSAPSRSTLKLEEAFLVFVDRPETMLRPGMSAVDLGAAPGGWTWQLVRRH------IRT 233

Query: 99  VAIDILDMEP 108
            A+D  +++P
Sbjct: 234 TAVDNGNLDP 243


>gi|328495214|gb|AEB21235.1| polymerase [Hendra virus]
          Length = 2244

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +LDS+E  I +  G N  LV SDM       ++++ +            A+ ++   G
Sbjct: 1916 IGNLDSYEYIINRTAGRNIGLVHSDMES--GIDKQVEEIMIEH--SHLISIAINVMIEDG 1971

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              + K         + +L + + +F  V+   PV S  ES E++L+  
Sbjct: 1972 VLVSKIAFAPGFPISRLLNMYRSYFGLVLVCFPVYSNPESTEVYLICL 2019


>gi|328495204|gb|AEB21226.1| polymerase [Hendra virus]
          Length = 2244

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +LDS+E  I +  G N  LV SDM       ++++ +            A+ ++   G
Sbjct: 1916 IGNLDSYEYIINRTAGRNIGLVHSDMES--GIDKQVEEIMIEH--SHLISIAINVMIEDG 1971

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              + K         + +L + + +F  V+   PV S  ES E++L+  
Sbjct: 1972 VLVSKIAFAPGFPISRLLNMYRSYFGLVLVCFPVYSNPESTEVYLICL 2019


>gi|328495194|gb|AEB21217.1| polymerase [Hendra virus]
          Length = 2244

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +LDS+E  I +  G N  LV SDM       ++++ +            A+ ++   G
Sbjct: 1916 IGNLDSYEYIINRTAGRNIGLVHSDMES--GIDKQVEEIMIEH--SHLISIAINVMIEDG 1971

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              + K         + +L + + +F  V+   PV S  ES E++L+  
Sbjct: 1972 VLVSKIAFAPGFPISRLLNMYRSYFGLVLVCFPVYSNPESTEVYLICL 2019


>gi|328495183|gb|AEB21207.1| polymerase [Hendra virus]
          Length = 2244

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +LDS+E  I +  G N  LV SDM       ++++ +            A+ ++   G
Sbjct: 1916 IGNLDSYEYIINRTAGRNIGLVHSDMES--GIDKQVEEIMIEH--SHLISIAINVMIEDG 1971

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              + K         + +L + + +F  V+   PV S  ES E++L+  
Sbjct: 1972 VLVSKIAFAPGFPISRLLNMYRSYFGLVLVCFPVYSNPESTEVYLICL 2019


>gi|328495174|gb|AEB21199.1| polymerase [Hendra virus]
          Length = 2244

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +LDS+E  I +  G N  LV SDM       ++++ +            A+ ++   G
Sbjct: 1916 IGNLDSYEYIINRTAGRNIGLVHSDMES--GIDKQVEEIMIEH--SHLISIAINVMIEDG 1971

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              + K         + +L + + +F  V+   PV S  ES E++L+  
Sbjct: 1972 VLVSKIAFAPGFPISRLLNMYRSYFGLVLVCFPVYSNPESTEVYLICL 2019


>gi|29468608|ref|NP_047113.2| polymerase [Hendra virus]
 gi|81923709|sp|O89344|L_HENDH RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|29432478|gb|AAC83194.2| polymerase [Hendra virus]
          Length = 2244

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +LDS+E  I +  G N  LV SDM       ++++ +            A+ ++   G
Sbjct: 1916 IGNLDSYEYIINRTAGRNIGLVHSDMES--GIDKQVEEIMIEH--SHLISIAINVMIEDG 1971

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              + K         + +L + + +F  V+   PV S  ES E++L+  
Sbjct: 1972 VLVSKIAFAPGFPISRLLNMYRSYFGLVLVCFPVYSNPESTEVYLICL 2019


>gi|45827242|gb|AAS78199.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R+ DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVTDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +      +  RTM         
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSS-SVTEGERTM----RVLDT 2673

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G  +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2674 VEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|119897567|ref|YP_932780.1| putative O-methyltransferase [Azoarcus sp. BH72]
 gi|119669980|emb|CAL93893.1| putative O-methyltransferase [Azoarcus sp. BH72]
          Length = 299

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDL 122
           ++ +   ++DLG  P +     AR+      + R + +D    M  +      + D  ++
Sbjct: 63  VIPAGGTVLDLGCGPANQLVQVARLNP----DARFIGVDASPAMLALARETLARCDVGNV 118

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              E   QA+   PD    D    T+    +     ++   A       +L  GG
Sbjct: 119 TLREAQMQALADIPD-ASVDAVISTMSLHHLTDFAALAATLAEVK---RVLRPGG 169


>gi|326530198|dbj|BAJ97525.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 508

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 33/177 (18%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-----ILQS--NRRIVDLGSSPG 79
           + +   H  D  V+        +R+A     ++++ +     +L S   + +++LG+  G
Sbjct: 31  KRYWEEHSRDLTVE---AMMLDSRAA----DLDKEERPEILSLLPSYEGKSVLELGAGIG 83

Query: 80  SWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
            ++   A+  G   +      V+  +           F   D    D             
Sbjct: 84  RFTGELAKTAGHVLAMDFIGSVIKKNESINGHYENASFMCADVTSPD------------- 130

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQGGTTND 191
            LV+ D +   I    +    +    E      ++ L +GG   F    F     + 
Sbjct: 131 -LVIEDNSIDLIFSNWLLMYLSDEEVEKLVERMVKWLKVGGHIFFRESCFHQSGDSK 186


>gi|304404455|ref|ZP_07386116.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus
           curdlanolyticus YK9]
 gi|304346262|gb|EFM12095.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paenibacillus
           curdlanolyticus YK9]
          Length = 349

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 43  QLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           + +G  +R+ +KL++      +     R  +D+G++PG W+ +      S      V AI
Sbjct: 185 REDGQISRAKFKLVEAERAFGLDYTQYRDALDIGAAPGGWTSLLLERGVS------VTAI 238

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           D   + P + V+  K  +L  ++ E   +    + DL++ DM++  +   K+    T +L
Sbjct: 239 DPAALHPSI-VRHPKLTYLKRNASEV--KFKPNSFDLLVCDMSWSPMQMVKLVMDLTDTL 295

Query: 162 CEAATFF 168
           C  AT  
Sbjct: 296 CHGATAI 302


>gi|190572873|ref|YP_001970718.1| putative RNA 2'-O-ribose methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|269969534|sp|B2FPH5|RLMM_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|190010795|emb|CAQ44404.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 355

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  + +   R  DLG++PG W+ V  R  
Sbjct: 187 APSRSALKLDEALLTLLMPEEREALAKPGMRAADLGAAPGGWTWVLTRQH 236


>gi|194364456|ref|YP_002027066.1| putative RNA 2'-O-ribose methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|269969533|sp|B4SK51|RLMM_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|194347260|gb|ACF50383.1| conserved hypothetical protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 355

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  + +   R  DLG++PG W+ V  R  
Sbjct: 187 APSRSALKLDEALLTLLTPEEREALAKPGMRAADLGAAPGGWTWVLTRQH 236


>gi|224381558|gb|ACN41908.1| polyprotein [Yellow fever virus 17D/Tiantan]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|219689237|pdb|3EVA|A Chain A, Crystal Structure Of Yellow Fever Virus Methyltransferase
           Complexed With S-Adenosyl-L-Homocysteine
 gi|219689238|pdb|3EVB|A Chain A, Crystal Structure Of Yellow Fever Virus Methyltransferase
           Complexed With S-Adenosyl-L-Homocysteine
 gi|219689239|pdb|3EVC|A Chain A, Crystal Structure Of Gtp Complex Of Yellow Fever Virus
           Methyltransferase And S-Adenosyl-L-Homocysteine
 gi|219689240|pdb|3EVD|A Chain A, Crystal Structure Of Gtp Complex Of Yellow Fever Virus
           Methyltransferase And S-Adenosyl-L-Homocysteine
 gi|219689241|pdb|3EVE|A Chain A, Crystal Structure Of Gpppa Complex Of Yellow Fever Virus
           Methyltransferase And S-Adenosyl-L-Homocysteine
 gi|219689242|pdb|3EVF|A Chain A, Crystal Structure Of Me7-Gpppa Complex Of Yellow Fever
           Virus Methyltransferase And S-Adenosyl-L-Homocysteine
          Length = 277

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 57  SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 113

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 114 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 173

Query: 169 ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 174 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 223


>gi|82021582|sp|Q6DV88|POLG_YEFVA RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|49240355|gb|AAT58050.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|829367|gb|AAC54267.1| polyprotein precursor [Yellow fever virus]
 gi|256274852|gb|ACU68589.1| polyprotein [Yellow fever virus]
 gi|256274854|gb|ACU68590.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|3288904|gb|AAC35906.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|3288906|gb|AAC35907.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|27735297|ref|NP_776009.1| non-structural protein NS5 [Yellow fever virus]
          Length = 905

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 56  SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 112

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 113 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 172

Query: 169 ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 173 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 222


>gi|3288908|gb|AAC35908.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLESVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|829369|gb|AAC54268.1| polyprotein precursor [Yellow fever virus]
 gi|3288890|gb|AAC35899.1| polyprotein [Yellow fever virus]
 gi|3288894|gb|AAC35901.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|3288898|gb|AAC35903.1| polyprotein [Yellow fever virus]
 gi|3288902|gb|AAC35905.1| polyprotein [Yellow fever virus]
 gi|3288912|gb|AAC35910.1| polyprotein [Yellow fever virus]
          Length = 905

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 56  SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 112

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 113 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 172

Query: 169 ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 173 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 222


>gi|3288892|gb|AAC35900.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|81993344|sp|Q89277|POLG_YEFVF RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|1314242|gb|AAA99712.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|694116|gb|AAA99713.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|9627245|ref|NP_041726.1| polyprotein precursor [Yellow fever virus]
 gi|130529|sp|P03314|POLG_YEFV1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|59339|emb|CAA27332.1| polyprotein precursor [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|4456986|emb|CAB37419.1| polyprotein [Yellow fever virus]
 gi|71389017|gb|AAZ31436.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I +      D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 25/160 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PILGVKFFKF 117
           +    +VDL ++PG  +   A +  +     ++ A D+  M           +G+K  K 
Sbjct: 258 KPGETVVDLAAAPGGKTTHLAELMKNKG---KIYAFDVDKMRMKRLKDFVKRMGIKIVKP 314

Query: 118 DFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAATFF 168
              D   + E I + +     L     +  TIG         R+        L       
Sbjct: 315 LVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLES 374

Query: 169 ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--FQKV 203
           A  ++  GG  L      F+     +I   L  H  F+ V
Sbjct: 375 AARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLV 414


>gi|260948558|ref|XP_002618576.1| hypothetical protein CLUG_02035 [Clavispora lusitaniae ATCC 42720]
 gi|238848448|gb|EEQ37912.1| hypothetical protein CLUG_02035 [Clavispora lusitaniae ATCC 42720]
          Length = 305

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 71/255 (27%), Gaps = 89/255 (34%)

Query: 58  INEKHQILQS-NRRIVDLGSSPGSWSQVAAR--------ITGSNANNTRVVAIDILDMEP 108
           ++    + +    ++VDLG +PG W   A               A+   ++ +D+L  +P
Sbjct: 35  LDRHFNLFRPSVHKVVDLGFAPGHWLTYARDELSHVHGVAAERIADKCTLIGLDLLFAQP 94

Query: 109 ILGVKFFKFD-------------------------------------------------- 118
             G    + +                                                  
Sbjct: 95  PAGTICTQGNVFSESAHRAVVELLQDAAMRRLRALSEPESYIQKEAAETELESEVSHLTR 154

Query: 119 -FLDLDSWEFIRQAIGGN---PDLVLSDMAYPTIGHR-----------------KIDHLR 157
            F DL   + + + +G      D+VL+D+  P +                    ++    
Sbjct: 155 AFGDLAVADPLHKLMGPKMYQADVVLADLGAPFLQESGFFNNTHSRPYIRGSRLRVPEKG 214

Query: 158 TMSLCEAATFFALEMLNIGGDFLVKT----FQGGTTNDILCLLKKHFQKVIHV--KPVAS 211
            + + EAA       L   G F+V+             +   L + F  V     KP   
Sbjct: 215 AIDMAEAALLLCCTALGKNGTFVVRLARVDLADPELGLLERRLDRVFANVTRWPSKPPVG 274

Query: 212 RAESVEMFLLAKGFR 226
             +   ++ + +  R
Sbjct: 275 IDD---LYFVCENKR 286


>gi|149236365|ref|XP_001524060.1| hypothetical protein LELG_04873 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452436|gb|EDK46692.1| hypothetical protein LELG_04873 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 389

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 54  KLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTR---------VVAIDI 103
           KL  ++ K++++    ++++D+G SPG W            N  +         ++  D+
Sbjct: 97  KLAYLDAKYRLITPETKKVLDIGFSPGHWMNYVVEQMCELHNVAQDKLYTKDVMILGFDL 156

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           L   P  G    + +     +   +      
Sbjct: 157 LFKNPPAGTSSIQGNIFSKFAQALVVNHFKE 187


>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis M23590]
 gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis M23590]
          Length = 435

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 49  ARSAYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           AR A+K  L+ I +K  +        Q++ +++D  S+PG     A  +    A    V 
Sbjct: 222 AR-AFKEGLISIQDKSSMFVAQLANLQAHDKVLDACSAPGG---KACHMAEILAPTGSVD 277

Query: 100 AIDI-----------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
           A DI           +    +  V  F+ D     + E   + +   P   L  + +   
Sbjct: 278 ATDIHAHKINLIKYNIKKLGLNNVHAFQHDATQPYT-EMYDKILVDAPCSGLGVLRHKPE 336

Query: 149 GHRKIDHLRTMSLCEAATFF---ALEMLNIGGDFL---VKTFQGGTTNDILCLLK--KHF 200
                    T +L +            L  GG  +       Q    N I   LK  K F
Sbjct: 337 IKYTQSKEGTQALVDLQLNILNNVKHHLKPGGTIIYSTCTIEQLENENVIYSFLKENKDF 396

Query: 201 QKVIHVKPV 209
           +    + P 
Sbjct: 397 EFETMIHPQ 405


>gi|220905563|ref|YP_002480875.1| hemolysin A [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869862|gb|ACL50197.1| hemolysin A [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 316

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 29/148 (19%)

Query: 36  DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           D      Q E + +R AYKLL I ++ ++  +    +D G+S G ++    +        
Sbjct: 105 DTAFALLQPEPYVSRGAYKLLTILDQFKLDVTGLVCLDAGASTGGFTDCLLQR-----GA 159

Query: 96  TRVVAID------ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG 149
            RV A+D         +     V   +     ++        I    D+V++D++     
Sbjct: 160 ARVYAVDVGRNQLHEKLRTNARVINLEG----VNLRHAEAGLIPEPVDMVVADVS----- 210

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGG 177
                   +++L   A    +  L  GG
Sbjct: 211 ------FISLTLVLPA---CMTWLRPGG 229


>gi|67538738|ref|XP_663143.1| hypothetical protein AN5539.2 [Aspergillus nidulans FGSC A4]
 gi|40743509|gb|EAA62699.1| hypothetical protein AN5539.2 [Aspergillus nidulans FGSC A4]
 gi|259485005|tpe|CBF81710.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 385

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 54/188 (28%), Gaps = 35/188 (18%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAID------ILDMEPILGVKFFKFDFL---- 120
           ++DL  +PG +   A +I  +    T  +           ++     V     D      
Sbjct: 118 LLDLCMAPGGFLATALKINPTAQALTFTLPKSEGGYEVARELRKHPNVTANFLDITMLAT 177

Query: 121 ------------DLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLR--TMSLCEA 164
                         D  +F+          DL L D        R     +     L   
Sbjct: 178 DMRTPAAEFPPSHPDFAKFLPAHFNEKQRFDLALCDGQVLRTQARAAYREKREATRLTLT 237

Query: 165 ATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV---ASRAESVEMF 219
               +LE L  GG  +V     +      +L   +K F  V   K     A R+     +
Sbjct: 238 QLILSLEHLRPGGTMIVLLHKIEAPNAVQLLYEFEK-FSTVRVYKHAHYHAKRSSF---Y 293

Query: 220 LLAKGFRK 227
           +LA   +K
Sbjct: 294 MLASDVKK 301


>gi|302888689|ref|XP_003043231.1| hypothetical protein NECHADRAFT_97150 [Nectria haematococca mpVI
           77-13-4]
 gi|256724146|gb|EEU37518.1| hypothetical protein NECHADRAFT_97150 [Nectria haematococca mpVI
           77-13-4]
          Length = 337

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 37/148 (25%)

Query: 58  INEKHQILQ----------------SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           ++ ++ IL+                  ++++D+ +  GSW    A   G      R+V  
Sbjct: 72  LDAQYDILKILLDGRAYLSPFTQENPPQKVLDIATGSGSW----AIDMGDEYPEARIVGT 127

Query: 102 DILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           D+  ++       V+F     +D  + E+       + DL+          H ++     
Sbjct: 128 DLSPIQSDLVPPNVEF----IVDDATDEWPNGRDWEDFDLI----------HTRVTMGCW 173

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQG 186
             +       A E L  GG    +   G
Sbjct: 174 SDMGNQVIKPAFEHLRPGGWMECQELMG 201


>gi|150865018|ref|XP_001384066.2| hypothetical protein PICST_83107 [Scheffersomyces stipitis CBS
           6054]
 gi|149386274|gb|ABN66037.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 357

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 54  KLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVA----ARITGSNANNTR----VVAIDIL 104
           KL +I+ +  +     ++++DLG  PG+W   A     +I        +    ++  D+L
Sbjct: 69  KLYKIDSECNVFNDKVKKVIDLGYVPGNWMSYAKFRMCQIHKLEEEEFKDKCHILGFDLL 128

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
              P LGV   + +     + + I        
Sbjct: 129 FSTPPLGVSTIQGNIFSRMAHKNIVNHFKEIA 160


>gi|288931952|ref|YP_003436012.1| RNA-binding S4 domain protein [Ferroglobus placidus DSM 10642]
 gi|288894200|gb|ADC65737.1| RNA-binding S4 domain protein [Ferroglobus placidus DSM 10642]
          Length = 208

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
          + +  G+     YKL ++++K+ I++    ++DLGSS G +   A+  
Sbjct: 53 KGKPRGY-----YKLKELDKKYGIVEEGDIVLDLGSSAGGFLLYASEK 95


>gi|217970064|ref|YP_002355298.1| RNA 2'-O-ribose methyltransferase [Thauera sp. MZ1T]
 gi|217507391|gb|ACK54402.1| putative RNA 2'-O-ribose methyltransferase [Thauera sp. MZ1T]
          Length = 435

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 46  GWRARSAYKL-------LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
              +RS  KL       L+  E+  IL++ +R VDLG++PG W+              RV
Sbjct: 264 NAPSRSTAKLSEAFMMLLEEGERDSILRAGQRAVDLGAAPGGWTWQLVNR------GLRV 317

Query: 99  VAIDILDME 107
            AID   + 
Sbjct: 318 TAIDNGPLR 326


>gi|332709849|ref|ZP_08429806.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
 gi|332351447|gb|EGJ31030.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
          Length = 297

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV----AARITGSNANNTRVVAIDIL 104
           ARS + + +I      ++    ++D G   G  ++     A+++ G + ++ R +AI   
Sbjct: 36  ARSPFGVKEI---LGFVRPGDMVLDAGCGTGQHARYLAEVASKVVGIDTDSAR-IAIAKE 91

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
             + +    F       L           G+ DLVL       +G   +        CE 
Sbjct: 92  HCQDLDNASFEVGSVTKLP-------FEDGSFDLVLLAQVLHHLGGEDVHSASLTEQCEQ 144

Query: 165 ATFFALEMLNIGGDFL 180
           A   A  +L   G  +
Sbjct: 145 AIGEAKRVLKPSGRLV 160


>gi|254523702|ref|ZP_05135757.1| RNA 2-O-ribose methyltransferase, SAM-dependent domain
           [Stenotrophomonas sp. SKA14]
 gi|219721293|gb|EED39818.1| RNA 2-O-ribose methyltransferase, SAM-dependent domain
           [Stenotrophomonas sp. SKA14]
          Length = 359

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  + +   R  DLG++PG W+ V  R  
Sbjct: 191 APSRSALKLDEALLTLLTPEEREALARPGMRAADLGAAPGGWTWVLTRQH 240


>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
 gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
          Length = 451

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 25/160 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKF 117
           Q    +VDL ++PG  +   A +  +     ++ A DI  M            G+K  K 
Sbjct: 260 QPGEIVVDLAAAPGGKTTHMAELMKNKG---KIYAFDIDKMRMKRLKEFVQRMGIKIVKP 316

Query: 118 DFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAATFF 168
              D   + E I + +     L     +  TIG         R+        L       
Sbjct: 317 IIKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREEKIKEMAELQRELLES 376

Query: 169 ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--FQKV 203
           A +++  GG  L      F+     +I   L  H  F+ V
Sbjct: 377 AAKLVKPGGRLLYTTCSIFKEENEENIKWFLANHPEFKLV 416


>gi|291614216|ref|YP_003524373.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
           lithotrophicus ES-1]
 gi|291584328|gb|ADE11986.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
           lithotrophicus ES-1]
          Length = 343

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 47  WRARSAYKLLQ-----INEKHQIL--QSNRRIVDLGSSPGSWSQVAARIT---------- 89
             +RS  KL +     +++K Q L  +     +DLG++PG W+    +            
Sbjct: 172 APSRSYLKLAEAFEVFLDKKEQALWLKPGMTAIDLGAAPGGWTWQLVQRGLKVVAVDNGP 231

Query: 90  ----GSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
                +   + R +  D     P   V +   D ++ 
Sbjct: 232 LKGAAAGHPSIRHLREDGFRFRPQRPVDWLVCDMVEQ 268


>gi|269969640|sp|C4ZJM0|RLMM_THASP RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
          Length = 364

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 46  GWRARSAYKL-------LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
              +RS  KL       L+  E+  IL++ +R VDLG++PG W+              RV
Sbjct: 193 NAPSRSTAKLSEAFMMLLEEGERDSILRAGQRAVDLGAAPGGWTWQLVNR------GLRV 246

Query: 99  VAIDILDME 107
            AID   + 
Sbjct: 247 TAIDNGPLR 255


>gi|260460313|ref|ZP_05808565.1| hemolysin A [Mesorhizobium opportunistum WSM2075]
 gi|259033958|gb|EEW35217.1| hemolysin A [Mesorhizobium opportunistum WSM2075]
          Length = 254

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           +G+ +R+A KLL   +   +  +    +D+G+S G ++QV      S+     V      
Sbjct: 65  QGYVSRAALKLLGGLDHFGLDPAGSEALDVGASTGGFTQVLLERGASHVTAIDVGHGQTH 124

Query: 104 LDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMA 144
            D+     V   +     L++ +  I    G  PD ++SD++
Sbjct: 125 PDVAGDSRVTVVEG----LNARDLTIADLAGRIPDFIVSDVS 162


>gi|71901130|ref|ZP_00683236.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71729094|gb|EAO31219.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 351

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 17/85 (20%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +        NE+   L+   +  DLG++PG W+            + RV 
Sbjct: 182 APSRSALKLEEALITLLTPNEREAKLRPGMQATDLGAAPGGWT------WVLICQHLRVT 235

Query: 100 AIDILDMEPI----LGVKFFKFDFL 120
           +ID   + P       V+  + D  
Sbjct: 236 SIDNAALRPPLLNHPLVQHVRADGF 260


>gi|289551003|ref|YP_003471907.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           lugdunensis HKU09-01]
          Length = 435

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 31/177 (17%)

Query: 49  ARSAYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           AR A+K  L+ I +K  +        Q++ +++D  S+PG     A  +    A    V 
Sbjct: 222 AR-AFKEGLISIQDKSSMFVAQLANLQAHDKVLDACSAPGG---KACHMAEILAPTGSVD 277

Query: 100 AIDI-----------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
           A DI           +    +  V  F+ D     + E   + +   P   L  + +   
Sbjct: 278 ATDIHAHKINLIKYNIKKLGLNNVHAFQHDATQPYT-EMYDKILVDAPCSGLGVLRHKPE 336

Query: 149 GHRKIDHLRTMSLCEAATFF---ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
                    T +L +            L  GG  +       Q    N I   LK++
Sbjct: 337 IKYTQSKEGTQALVDLQLNILNNVRHHLKPGGTIIYSTCTIEQLENENVIYSFLKEN 393


>gi|298675322|ref|YP_003727072.1| RNA-binding S4 domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288310|gb|ADI74276.1| RNA-binding S4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 220

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 44  LEGW-RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG--SNANNTRVVA 100
            EG+ R +  +KL  I EK  ++  N  ++D+GSS G +   A+ I         +R   
Sbjct: 51  EEGFDRPQGYFKLQYIQEKTGLINKNDYVLDIGSSAGGFLLYASEIAAYVRGIEFSRYFE 110

Query: 101 IDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            ++  +    G V F   D   +   +          D++LSD+    +           
Sbjct: 111 SELEKISSEYGNVSFVIDDIFTVTMDKLS----SRKVDVILSDLTLEPMD---------- 156

Query: 160 SLCEAATFFALEMLNIGGDF--LVKTFQGGTTNDILCLLKKH-FQKVIHVKPVASRAESV 216
                     L +L   G    + KT    T N IL  LK      +  ++P     +  
Sbjct: 157 --SVQILERVLPLLKQNGKLLQVTKTKDINTRNIILEKLKDMGLTIIDVLEPE---KQ-- 209

Query: 217 EMFLLAKG 224
           E++++A+ 
Sbjct: 210 EIYIIAQN 217


>gi|114048284|ref|YP_738834.1| putative RNA 2'-O-ribose methyltransferase [Shewanella sp. MR-7]
 gi|123326312|sp|Q0HSX8|RLMM_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|113889726|gb|ABI43777.1| conserved hypothetical protein [Shewanella sp. MR-7]
          Length = 361

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFAQFVPKEEQEERVRSGMNAVDLGACPGGWTYQLVRR------GMMVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M   L     VK F+ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMNEKLMETGQVKHFREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A      E+L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVMAILNTMQEILKENG 330


>gi|146411785|gb|ABI54477.1| polyprotein [Kedougou virus]
          Length = 3408

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 15/177 (8%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL  + E+   +    R+VDLG   G WS  AA     +            + EP
Sbjct: 2564 SRGTAKLAWMAER-GFVDLKGRVVDLGCGRGGWSYYAASQKKVHEVAGFTKGGPGHE-EP 2621

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            I+ V+ + ++ + + S   +        D +L D+   +     ++  RT          
Sbjct: 2622 IM-VQSYGWNIVRMKSGIDVHYLPVQPADTLLCDIGESSSN-PGVEEART----LKVLEL 2675

Query: 169  ALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHF--QKVIHVKPVASRAESVEMFLL 221
                +  G  F VK          + L  L+++F    V    P+ SR  + EM+ +
Sbjct: 2676 VENWIKPGTSFCVKVLCPYMPKVLEKLESLQRNFGGGLVRC--PL-SRNSTHEMYWV 2729


>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis SK119]
 gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis SK119]
 gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           hominis subsp. hominis C80]
          Length = 435

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 33/188 (17%)

Query: 49  ARSAYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           +R A+K  L+ I +K  +L       Q +  I+D  S+PG     A  +    A+   V 
Sbjct: 222 SR-AFKDGLISIQDKSSMLVGYLMDVQKDDTILDACSAPGG---KACHMAELLASTGHVD 277

Query: 100 AIDI-----------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
           A DI           +    +  V  F  D     S E   + +   P   L  + +   
Sbjct: 278 ATDIHKHKIGLIKENIKKLKLKNVSTFDHDATKPYS-ELYDKILVDAPCSGLGVLKHKPE 336

Query: 149 GHRKIDHLRTMSLCEAATFFALEM---LNIGGDFL---VKTFQGGTTNDILCLLK--KHF 200
                       L E        +   L  GG  +       Q    N I   LK  K F
Sbjct: 337 IKYVQSKDSINDLVEIQLSILDNVKHNLKPGGSLIYSTCTIEQMENENVIYTFLKENKDF 396

Query: 201 QKVIHVKP 208
           +  +   P
Sbjct: 397 EFELITHP 404


>gi|113971056|ref|YP_734849.1| putative RNA 2'-O-ribose methyltransferase [Shewanella sp. MR-4]
 gi|122943664|sp|Q0HGM5|RLMM_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|113885740|gb|ABI39792.1| conserved hypothetical protein [Shewanella sp. MR-4]
          Length = 361

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFAQFVPKEEQEERVRSGMNAVDLGACPGGWTYQLVRR------GMMVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M   L     VK F+ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMNEKLMETGQVKHFREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A      E+L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVMAILNTMQEILKENG 330


>gi|73661387|ref|YP_300168.1| hypothetical protein SSP0078 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493902|dbj|BAE17223.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 243

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 29/135 (21%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILDMEP---- 108
           KLL+       +Q+  R++D+G + G  +Q+ A   G       V +  D+L M      
Sbjct: 10  KLLEKAS----IQNGMRVLDVGCATGEVTQIVANKVGDQGEVIGVDMNQDMLHMAEENNQ 65

Query: 109 ILGVKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
              VK+ K D  +           +G    + L                        A  
Sbjct: 66  FENVKYIKGDIYNLPKDIGKFDAIVGRRVLMYLPG-------------------AYEALN 106

Query: 168 FALEMLNIGGDFLVK 182
                L   G F  +
Sbjct: 107 VLKGHLKPNGIFCFQ 121


>gi|296536788|ref|ZP_06898841.1| probable RNA 2'-O-ribose methyltransferase mtfA [Roseomonas
           cervicalis ATCC 49957]
 gi|296262883|gb|EFH09455.1| probable RNA 2'-O-ribose methyltransferase mtfA [Roseomonas
           cervicalis ATCC 49957]
          Length = 307

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 44  LEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            EG  +R+  KL +   +          ++DLG++PG W+   A++         VVA+D
Sbjct: 145 REGPPSRAYLKLWEALTRLGRWPGPGETVLDLGAAPGGWTWALAQLGCQ------VVAVD 198

Query: 103 ILDMEP----ILGVKF 114
              M+P    +  V  
Sbjct: 199 KAQMDPGVAALPNVTI 214


>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
 gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
          Length = 453

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 34/164 (20%)

Query: 46  GWRARS-AYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNA-- 93
           G  AR+ A+K   + I ++  ++           R++D+ ++PG  +   A I  +    
Sbjct: 225 GQPARTHAFKEGHITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSI 284

Query: 94  --------------NNTRVVAIDILDMEPILGVK---FFKFDFLDLDSWEFIRQAIGGNP 136
                         +NT  + +DI++  PI G K   F + +  D    +     +G   
Sbjct: 285 LATDLHPHKLDLIDHNTERLGLDIIETAPIDGRKAPEFLQAESYDAVLVDAPCSGLGVMR 344

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                D+ Y T     +++L+T+ L       A ++L I G  +
Sbjct: 345 R--KPDIKY-TKREEDLENLQTIQLAL--LDAATKVLKIEGKLV 383


>gi|258549712|ref|YP_003199419.1| lambda-2 protein [Mammalian orthoreovirus 3]
 gi|257220491|gb|ACV52065.1| lambda-2 protein [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWMQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCVHATAPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIH--VKPVASRAESVEMFLLAKG 224
           +K      T       K       +  +KP  +   +VE+F +A G
Sbjct: 614 MKINFPTRTVWHYIEQKILPNVTSYMLIKPFVT--NNVEVFFVAFG 657


>gi|238785438|ref|ZP_04629423.1| hypothetical protein yberc0001_16690 [Yersinia bercovieri ATCC
           43970]
 gi|238713643|gb|EEQ05670.1| hypothetical protein yberc0001_16690 [Yersinia bercovieri ATCC
           43970]
          Length = 527

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 30/154 (19%)

Query: 36  DPYVQRAQLEGWR-ARSAYK--------LLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           D Y  RA  + +R ++++ K        L++   K + L      +DLG   G W  +  
Sbjct: 3   DFY--RAFEDKYRGSQASIKERLMVYSPLIE---KIKELHGGLTSLDLGCGRGEWMSLLR 57

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            +           A+       +   +   F   ++D+  F+         ++       
Sbjct: 58  DLGVETFGIDLDDAM-------LEECRIRNFSVRNVDAISFLNSCEAEKYHII------- 103

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                 ++H+    LC      A+  L  GG  +
Sbjct: 104 -TAFHFVEHIAFDDLC-TVIDNAIRALKPGGILI 135


>gi|182682524|ref|YP_001830684.1| putative RNA 2'-O-ribose methyltransferase [Xylella fastidiosa M23]
 gi|182632634|gb|ACB93410.1| conserved hypothetical protein [Xylella fastidiosa M23]
 gi|307578802|gb|ADN62771.1| putative RNA 2'-O-ribose methyltransferase [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 366

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 17/85 (20%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +        NE+   L+      DLG++PG W+            + RV 
Sbjct: 197 APSRSALKLEEALITLLTPNEREAKLRPGMCATDLGAAPGGWT------WVLICQHLRVT 250

Query: 100 AIDILDMEPI----LGVKFFKFDFL 120
           +ID   + P       V+  + D  
Sbjct: 251 SIDNAALRPPLLNHPLVQHVRADGF 275


>gi|28199774|ref|NP_780088.1| putative RNA 2'-O-ribose methyltransferase [Xylella fastidiosa
           Temecula1]
 gi|81438278|sp|Q87AC0|RLMM_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|269969642|sp|B2I9N9|RLMM_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|28057895|gb|AAO29737.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 351

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 17/85 (20%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +        NE+   L+      DLG++PG W+            + RV 
Sbjct: 182 APSRSALKLEEALITLLTPNEREAKLRPGMCATDLGAAPGGWT------WVLICQHLRVT 235

Query: 100 AIDILDMEPI----LGVKFFKFDFL 120
           +ID   + P       V+  + D  
Sbjct: 236 SIDNAALRPPLLNHPLVQHVRADGF 260


>gi|221070090|ref|ZP_03546195.1| S-adenosylmethionine decarboxylase proenzyme [Comamonas
           testosteroni KF-1]
 gi|220715113|gb|EED70481.1| S-adenosylmethionine decarboxylase proenzyme [Comamonas
           testosteroni KF-1]
          Length = 421

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK---- 182
            + +A     DL L D+  P      +    +             +L  GG  ++     
Sbjct: 280 ALMEATDERFDLALMDLTDPDTPASALYAPDS-------LACMKRVLAPGGALVLHLGSP 332

Query: 183 TFQGGTTNDILCLLKKHFQKVIHV 206
            F G    +++  L++ F  V   
Sbjct: 333 VFHGPQVAELVRSLRQQFAVVRCY 356


>gi|160893330|ref|ZP_02074117.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
 gi|156865022|gb|EDO58453.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
          Length = 449

 Score = 43.7 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 19/132 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVK 113
           ++    I+D+ ++PG  +  AA  TG   +   V A DI + +            I  V 
Sbjct: 253 IRPGNVILDVCAAPGGKTMYAAERTGEQGH---VYARDISEEKIDKLEENLGRLEIHNVT 309

Query: 114 FFKFDF--LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE---AATFF 168
              ++    D    E     +   P   L  MA        +       L E        
Sbjct: 310 TKVWNAMETDPKMIEKADVVLADLPCSGLGVMARKNDIKYHVTADSISELAEIQKNILDA 369

Query: 169 ALEMLNIGGDFL 180
               +  GG  +
Sbjct: 370 CASYVKPGGTLI 381


>gi|242821002|ref|XP_002487593.1| hypothetical protein TSTA_000170 [Talaromyces stipitatus ATCC
           10500]
 gi|218712514|gb|EED11939.1| hypothetical protein TSTA_000170 [Talaromyces stipitatus ATCC
           10500]
          Length = 258

 Score = 43.7 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 31/191 (16%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNA----NNTRVVAIDILDMEPILGVKFFKFD 118
            +      I+D+  +PG +  +A            +  R+     + +     V     D
Sbjct: 12  NLYCDGYSILDMCMAPGGFLAIALSCNPEAQALAFSLPRIDGGHRVLLPKRPSVTLKFLD 71

Query: 119 FL--------------DLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMS-- 160
                             D+  F+          DL++ D        R    +RT +  
Sbjct: 72  VTMLAEDMGLSCIPNEHPDAGNFLPSQFDPRQSFDLIICDGQVLRNHGRADYRVRTEASR 131

Query: 161 LCEAATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPVASR---AES 215
           LC      AL  L  GG  +V     +   T  +L    K F  +   K   +R     S
Sbjct: 132 LCLTQLTIALNHLTPGGTMIVLLHKVEALATVQLLHTFDK-FASIQLFK--HTRFHAKRS 188

Query: 216 VEMFLLAKGFR 226
              ++LA   R
Sbjct: 189 S-FYMLATNIR 198


>gi|110085615|gb|ABG49450.1| guanylyltransferase [Mammalian orthoreovirus 2]
          Length = 1288

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWMQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD      GH  +    +  L E+     +     GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDADQVVDGHDDLS--ISSGLVESLLDSCMHATAPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQKVIH--VKPVASRAESVEMFLLAKG 224
           +K              K       +  +KP  +   +VE+F +A G
Sbjct: 614 MKINFPTRAVWHYIEQKILPNVTSYMLIKPFVT--NNVEIFFVAFG 657


>gi|326438073|gb|EGD83643.1| hypothetical protein PTSG_04250 [Salpingoeca sp. ATCC 50818]
          Length = 571

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITG-SNANNTRVVAIDILDM 106
           +R+ +KL ++  +    L  +   +D+G++PG WSQ  A+  G   A +   + +  +  
Sbjct: 360 SRAYFKLNEVLLRRSFTLTRDMTAIDVGAAPGGWSQCMAKQAGLVLAVDPGAIEVPHIPY 419

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAI---GGNPDLVLSDM 143
            P +         + +        AI    G   +   DM
Sbjct: 420 TPGMKRPSEPGTIIHIQKRMQDSHAILEEFGPLHMYTCDM 459


>gi|226941326|ref|YP_002796400.1| RNA 2'-O-ribose methyltransferase XF_0748 [Laribacter hongkongensis
           HLHK9]
 gi|269969531|sp|C1DB52|RLMM_LARHH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226716253|gb|ACO75391.1| Putative RNA 2'-O-ribose methyltransferase XF_0748 [Laribacter
           hongkongensis HLHK9]
          Length = 353

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 47  WRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +  E           L+     VDLG++PG W+    R         +V 
Sbjct: 175 APSRSTLKLAEAFEVFLGEQGQQDKLKPGMTAVDLGAAPGGWTWQLLRR------GIKVY 228

Query: 100 AIDILDME 107
           A+D   M+
Sbjct: 229 AVDNGPMK 236


>gi|88861354|ref|ZP_01135984.1| RNA 2'-O-ribose methyltransferase, SAM-dependent domain
           [Pseudoalteromonas tunicata D2]
 gi|88816620|gb|EAR26445.1| RNA 2'-O-ribose methyltransferase, SAM-dependent domain
           [Pseudoalteromonas tunicata D2]
          Length = 361

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +         EK + L    R VDLG+ PG W+ Q+  R     A +   
Sbjct: 182 APSRSTLKLDEAFIVFVPEAEKEKRLSPGMRAVDLGACPGGWTYQLVRRGMFVQAIDNGP 241

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           +A  ++D      VK +  D       +     +  +  +   D     +    ++  
Sbjct: 242 MAQSLMDTGQ---VKHYTVDGFKFRPEKRNIDWLVCDM-VEKPDKVTQLMIDWAVNDF 295


>gi|289208330|ref|YP_003460396.1| RNA 2'-O-ribose methyltransferase [Thioalkalivibrio sp. K90mix]
 gi|288943961|gb|ADC71660.1| putative RNA 2'-O-ribose methyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 364

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 21/107 (19%)

Query: 40  QRAQLEGWRARSAYKLLQI------NEKHQI-LQSNRRIVDLGSSPGSWSQVAARI---- 88
           +     G  +RSA KL +         +  + L    + VDLG++PG W+    +     
Sbjct: 181 RLRAPSGAPSRSALKLEEAWHTFIPAHEWPVRLAEGMQAVDLGAAPGGWTWELVQRGMYV 240

Query: 89  --TGSNANNTRVVAI--------DILDMEPILGVKFFKFDFLDLDSW 125
               +   + R++A         D    EP   V +   D +D  + 
Sbjct: 241 HAVDNGPMDERLMATTQVEHHREDAFVWEPPNPVAWLVCDIVDKPAR 287


>gi|222618852|gb|EEE54984.1| hypothetical protein OsJ_02599 [Oryza sativa Japonica Group]
          Length = 1434

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 47   WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS 82
              +RSA KL +         E+  + +   R  DLG++PG W+
Sbjct: 1014 APSRSALKLDEALLTLLTPEEREALAKPGMRAADLGAAPGGWT 1056


>gi|284029539|ref|YP_003379470.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283808832|gb|ADB30671.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 251

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 26/141 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+  + +VD+G+  G  +   A+ + +     RV+A+D               D +D   
Sbjct: 31  LRRGQTVVDIGAGTGFLTVELAQRSAA-----RVIAVDPW------------ADAMD--V 71

Query: 125 WEFIRQAIG-GNPDLVLSDMA----YPTIGHRKIDHLRTMSLCEAATFFAL--EMLNIGG 177
                + +G  + +LV+SD A            + +L   +   AAT  A    +L  GG
Sbjct: 72  LRRKVEYLGLRDVELVVSDAARLELPDGSVDVVVSNLGINNFANAATVLAECHRVLRPGG 131

Query: 178 DFLVKTFQGGTTNDILCLLKK 198
             L+ T   G   +   +L++
Sbjct: 132 HLLISTNLVGHMQEFYDVLRE 152


>gi|30316449|gb|AAO24117.1| polyprotein precursor [Kamiti River virus]
          Length = 3357

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 21/202 (10%)

Query: 30   LNRHINDPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
            L++   D Y    V   +   + +R   KL ++  K+   + N R+VDLG   G WSQ  
Sbjct: 2490 LDKDTFDKYKVRGVNETERGDYVSRGGLKLDEVIRKYN-WKPNGRVVDLGCGRGGWSQRV 2548

Query: 86   ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
                  ++     V     ++      K +     +L S   + +      D ++ D+  
Sbjct: 2549 VMEESVSSVYGYTVGGQEKEVPQKFLTKGYNL--TNLKSGVDVYRLPPTRCDTIMCDIGE 2606

Query: 146  --PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC----LLKKH 199
              P     K   L+ + L E          N   +F+ K     +   +        K  
Sbjct: 2607 SDPNPAKEKTRTLKVLELLENWLSV-----NPSAEFVCKILSPYSLEVLRKIETLQQKHK 2661

Query: 200  FQKVIHVKPVASRAESVEMFLL 221
             + V       SR  + EM+ +
Sbjct: 2662 GRLVRLT---YSRNSTAEMYYV 2680


>gi|33620714|ref|NP_891560.1| polyprotein precursor [Kamiti River virus]
 gi|30316442|gb|AAO24118.1| polyprotein precursor [Kamiti River virus]
          Length = 3357

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 21/202 (10%)

Query: 30   LNRHINDPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
            L++   D Y    V   +   + +R   KL ++  K+   + N R+VDLG   G WSQ  
Sbjct: 2490 LDKDTFDKYKVRGVNETERGDYVSRGGLKLDEVIRKYN-WKPNGRVVDLGCGRGGWSQRV 2548

Query: 86   ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
                  ++     V     ++      K +     +L S   + +      D ++ D+  
Sbjct: 2549 VMEESVSSVYGYTVGGQEKEVPQKFLTKGYNL--TNLKSGVDVYRLPPTRCDTIMCDIGE 2606

Query: 146  --PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC----LLKKH 199
              P     K   L+ + L E          N   +F+ K     +   +        K  
Sbjct: 2607 SDPNPAKEKTRTLKVLELLENWLSV-----NPSAEFVCKILSPYSLEVLRKIETLQQKHK 2661

Query: 200  FQKVIHVKPVASRAESVEMFLL 221
             + V       SR  + EM+ +
Sbjct: 2662 GRLVRLT---YSRNSTAEMYYV 2680


>gi|37695589|ref|NP_937780.1| NS5 protein [Kamiti River virus]
          Length = 887

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 21/202 (10%)

Query: 30  LNRHINDPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           L++   D Y    V   +   + +R   KL ++  K+   + N R+VDLG   G WSQ  
Sbjct: 20  LDKDTFDKYKVRGVNETERGDYVSRGGLKLDEVIRKYN-WKPNGRVVDLGCGRGGWSQRV 78

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
                 ++     V     ++      K +     +L S   + +      D ++ D+  
Sbjct: 79  VMEESVSSVYGYTVGGQEKEVPQKFLTKGYNL--TNLKSGVDVYRLPPTRCDTIMCDIGE 136

Query: 146 --PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILC----LLKKH 199
             P     K   L+ + L E          N   +F+ K     +   +        K  
Sbjct: 137 SDPNPAKEKTRTLKVLELLENWLSV-----NPSAEFVCKILSPYSLEVLRKIETLQQKHK 191

Query: 200 FQKVIHVKPVASRAESVEMFLL 221
            + V       SR  + EM+ +
Sbjct: 192 GRLVRLT---YSRNSTAEMYYV 210


>gi|330845195|ref|XP_003294482.1| hypothetical protein DICPUDRAFT_43486 [Dictyostelium purpureum]
 gi|325075054|gb|EGC28997.1| hypothetical protein DICPUDRAFT_43486 [Dictyostelium purpureum]
          Length = 565

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 29/144 (20%)

Query: 34  INDPYVQRAQL-----EGW-------------------RARSAYKLLQINEKHQIL-QSN 68
            ND YV  A+       GW                    +R+  KL++  E        +
Sbjct: 354 SNDIYVSVARTTYKDGRGWSFPLPFNQGVVPIERDQIPPSRAYKKLIESFETLGTTPSPS 413

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL----GVKFFKFDFLDLDS 124
             +V+LG++PG W+ +  R+        ++  ID   ++        +     D      
Sbjct: 414 STVVELGAAPGGWTSILERLYSQENEKLKIYTIDRSKLDSQFKTSTSITHTYGDGTKFTP 473

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTI 148
                       D + +DMA P  
Sbjct: 474 SNIGGLGNNTRVDWLFNDMAIPAS 497


>gi|182413607|ref|YP_001818673.1| hypothetical protein Oter_1789 [Opitutus terrae PB90-1]
 gi|177840821|gb|ACB75073.1| conserved hypothetical protein [Opitutus terrae PB90-1]
          Length = 344

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 22/129 (17%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANN 95
           + A      +RS  K   + E + +L         + DLG++PG WS  AA+        
Sbjct: 174 RMADDPLAPSRSYLK---VEEAYGVLGGEPTRGETVCDLGAAPGGWSYSAAKR------G 224

Query: 96  TRVVAIDILDME----PILGVKFFKFDFLD-----LDSWEFIRQAIGGNPDLVLSDMAYP 146
            RV+A+D   ++        ++  + D         + ++++   +   P  VL D+  P
Sbjct: 225 ARVIAVDNGPLKGGALDHPLIEHRREDAFRFAPVGDEVFDWLFCDLVEEPHHVLQDLVAP 284

Query: 147 TIGHRKIDH 155
            +      H
Sbjct: 285 WLERGWCRH 293


>gi|18977038|ref|NP_578395.1| nol1-nop2-sun family putative nucleolar protein IV [Pyrococcus
           furiosus DSM 3638]
 gi|18892673|gb|AAL80790.1| putative nucleolar protein IV (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 452

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 25/161 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVKFFKF 117
           +    +VDL ++PG  +   A +     N  ++ A DI         D    +G+K  K 
Sbjct: 259 KPGEVVVDLAAAPGGKTTHMAELMK---NRGKIFAFDIDKARMKRLKDFVSRMGIKIVKP 315

Query: 118 DFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAATFF 168
              D   + E + + +     L     +  TIG         R+        L       
Sbjct: 316 IVKDARKAPEILGEEVADRVMLDAPCTSSGTIGKNPELRWRLREQKIEEMAQLQRELLES 375

Query: 169 ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--FQKVI 204
           A +++  GG  L      F     +++   L+ +  F+ V 
Sbjct: 376 AAKLVKPGGRLLYTTCSIFIEEDEDNVSWFLETYKEFRLVK 416


>gi|124481960|gb|ABN11831.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +      + D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAESADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT          A E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMAEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|296116602|ref|ZP_06835212.1| putative RNA 2'-O-ribose methyltransferase MtfA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976814|gb|EFG83582.1| putative RNA 2'-O-ribose methyltransferase MtfA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 328

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 44  LEGWRARSAYKLLQINEKHQ-ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            +G  +R+  KL +   +     ++    +DLG+SPG W+ VAAR          V+AID
Sbjct: 164 RQGPPSRAYLKLWEAFTRLGQWPRAGETCLDLGASPGGWTWVAARCGAD------VIAID 217

Query: 103 ILDMEP----ILGVKF 114
             D++P    + GV  
Sbjct: 218 RADLDPRVAALPGVTT 233


>gi|118573112|sp|Q1X881|POLG_YEFVN RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|63147727|gb|AAY34247.1| polyprotein [Yellow fever virus]
          Length = 3412

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R+ DLG   G W   AA     +      +  D    E 
Sbjct: 2563 SRGTAKLRWFHER-GYVKLEGRVTDLGCGRGGWCYYAAAQKEVSGVKGYTLGRDGH--EK 2619

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       + +      + +L D+   +      +  RT          
Sbjct: 2620 PMNVQSLGWNIVTFKDKTDVHRLEPLKCETLLCDIG-ESSPSSATEGERT----LRVLDT 2674

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G  +F +K          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2675 VEKWLACGVDNFCIKVLAPYMPDVIEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2729


>gi|56461266|ref|YP_156547.1| cyclopropane fatty acyl phospholipid synthase [Idiomarina
           loihiensis L2TR]
 gi|56180276|gb|AAV82998.1| Cyclopropane fatty acyl phospholipid synthase [Idiomarina
           loihiensis L2TR]
          Length = 371

 Score = 43.4 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 40/188 (21%)

Query: 16  KVKNRSCQGSSRDW-LNRH----INDPYVQRAQLEG-WRARSAYKLLQINE--KHQI--- 64
           K +  + Q  S+ W + +H     ND Y         +      K   ++E  +H++   
Sbjct: 87  KSRVFNLQSKSKAWEVGQHHYDMGNDLYQSMLDERMVYTCGYWEKAKDVDEAQRHKLELC 146

Query: 65  -----LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV----VAIDILDMEPILGVKFF 115
                L+   R++D+G   GS+ Q AA   G       +    VA+     + +  V+F 
Sbjct: 147 CKKLGLKPGMRVLDIGCGWGSFMQYAAENYGVECVGVTISKEQVALGKERCKGLP-VEFR 205

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             D+ +LD             D V+S   +  +G +  D              AL     
Sbjct: 206 LQDYRELD----------EQFDRVISLGMFEHVGQKNYDDY---------MDVALRCTKE 246

Query: 176 GGDFLVKT 183
            G FL+ T
Sbjct: 247 DGLFLLHT 254


>gi|68487185|ref|XP_712536.1| hypothetical protein CaO19.10970 [Candida albicans SC5314]
 gi|68487246|ref|XP_712506.1| hypothetical protein CaO19.3466 [Candida albicans SC5314]
 gi|46433898|gb|EAK93324.1| hypothetical protein CaO19.3466 [Candida albicans SC5314]
 gi|46433930|gb|EAK93355.1| hypothetical protein CaO19.10970 [Candida albicans SC5314]
          Length = 379

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 54  KLLQINEKHQILQSNRR-IVDLGSSPGSWSQVAARIT---------GSNANNTRVVAIDI 103
           K+  ++ + +IL  ++  I++LG  P +W                 G       ++  DI
Sbjct: 67  KIKALDRQFKILNKSQTKILELGFIPSNWLIYIRDTMAKLHNISDPGKIHQKCHILGFDI 126

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           L   P +GV   + +     + + I      
Sbjct: 127 LFGSPPIGVSSIQGNIFSKLAHKNIINHFKE 157


>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           fusiformis ZC1]
 gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
           fusiformis ZC1]
          Length = 453

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 34/164 (20%)

Query: 46  GWRARS-AYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNA-- 93
           G  AR+ A+K  ++ I ++  ++           R++D+ ++PG  +   A I  +    
Sbjct: 225 GQPARTKAFKEGMITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHIAEIMQNEGSI 284

Query: 94  --------------NNTRVVAIDILDMEPILGVK---FFKFDFLDLDSWEFIRQAIGGNP 136
                         +NT  + +DI++  PI G K   F +    D    +     +G   
Sbjct: 285 LATDLHPHKLDLIDHNTERLGLDIVETAPIDGRKAPEFLQAASFDAILVDAPCSGLGVMR 344

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                D+ Y T     ++ L+ + L       A ++L   G  +
Sbjct: 345 R--KPDIKY-TKREEDLESLQKIQLAL--LDAATKVLKTDGKLV 383


>gi|145236533|ref|XP_001390914.1| UMTA methyltransferase family protein [Aspergillus niger CBS
           513.88]
 gi|134075370|emb|CAK44993.1| unnamed protein product [Aspergillus niger]
          Length = 323

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDS 124
            +RI+D+G+  G W   A ++     N  ++V  D+  ++P      VKF   D      
Sbjct: 89  GKRILDIGTGTGIW---AIQMGDEYPNVEKIVGNDLSPIQPSWVPPNVKFIVDDV----- 140

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
               ++ +   P   +               +R             E L  GG  
Sbjct: 141 ---EKEWMESEPYDYIHCRYMAGSIRDWPRLIRQ----------CYENLKPGGWL 182


>gi|162148880|ref|YP_001603341.1| RNA 2'-O-ribose methyltransferase mtfA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545370|ref|YP_002277599.1| putative RNA 2'-O-ribose methyltransferase MtfA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787457|emb|CAP57053.1| putative RNA 2'-O-ribose methyltransferase mtfA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533047|gb|ACI52984.1| putative RNA 2'-O-ribose methyltransferase MtfA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 335

 Score = 43.4 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 46  GWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           G  +R+  KL +   +  +      R VDLG+SPG W+  A    G++     VVA+D  
Sbjct: 161 GPPSRAYLKLWEACARLGVWPVPGERCVDLGASPGGWT-WAIAQCGAD-----VVAVDRA 214

Query: 105 DMEP----ILGVK 113
           D++P    + GV 
Sbjct: 215 DLDPAVAAMPGVT 227


>gi|238883138|gb|EEQ46776.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 379

 Score = 43.4 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 54  KLLQINEKHQILQSNRR-IVDLGSSPGSWSQVAARIT---------GSNANNTRVVAIDI 103
           K+  ++ + +IL  ++  I++LG  P +W                 G       ++  DI
Sbjct: 67  KIKALDRQFKILNKSQTKILELGFIPSNWLIYIRDTMAKLHNISDPGKIHQKCHILGFDI 126

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           L   P +GV   + +     + + I      
Sbjct: 127 LFGSPPIGVSSIQGNIFSKLAHKNIINHFKE 157


>gi|24373109|ref|NP_717152.1| putative RNA 2'-O-ribose methyltransferase [Shewanella oneidensis
           MR-1]
 gi|81462497|sp|Q8EGQ9|RLMM_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|24347298|gb|AAN54596.1|AE015599_8 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 361

 Score = 43.4 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFAQFVPKEEQEERVRSGMNAVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M   L     VK F+ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMNEKLMETGQVKHFREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A      ++L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVMAILNTMQDILKENG 330


>gi|302348127|ref|YP_003815765.1| hypothetical protein ASAC_0327 [Acidilobus saccharovorans 345-15]
 gi|302328539|gb|ADL18734.1| hypothetical protein ASAC_0327 [Acidilobus saccharovorans 345-15]
          Length = 187

 Score = 43.4 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           LQ    +VDLGS PG ++   A+I        +V A+DI        ++       +   
Sbjct: 25  LQPGMTVVDLGSGPGRFTIPVAKIVAP----GKVYAVDIDK----ESLRIVAEKASEEGL 76

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS-LCEAATFFALEMLNIGGDFLVKT 183
                        + L D     +    + H      + +A    A+ +L  GG   V  
Sbjct: 77  SNVEVVEADATQGVGLPDNVADVVIMANVLHDFIHEGVSQAVLRTAVRLLKRGGRLAVYE 136

Query: 184 F 184
           F
Sbjct: 137 F 137


>gi|120554699|ref|YP_959050.1| putative RNA 2'-O-ribose methyltransferase [Marinobacter aquaeolei
           VT8]
 gi|166199442|sp|A1U1J4|RLMM_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|120324548|gb|ABM18863.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 358

 Score = 43.4 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI------NEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +        +++   L   R+ VDLG++PG W+    +          V 
Sbjct: 187 APSRSALKLEEAWKVFIPEDRYLDYLGGGRKAVDLGAAPGGWTWQLVQ------QGMMVT 240

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 241 AVDNGPMNP 249


>gi|310823279|ref|YP_003955637.1| hypothetical protein STAUR_6051 [Stigmatella aurantiaca DW4/3-1]
 gi|309396351|gb|ADO73810.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 336

 Score = 43.4 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 47  WRARSAYKLLQ-INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
             +R+A KL + ++            VDLG++PG W+Q         A   RV+A+D   
Sbjct: 176 APSRAAMKLEEALDGLPFEPGRGEVCVDLGAAPGGWTQRLV------ARGARVIAVDPAK 229

Query: 106 MEP----ILGVKFFK 116
           + P       V+  +
Sbjct: 230 LMPELASHPRVRHIQ 244


>gi|115378609|ref|ZP_01465762.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115364396|gb|EAU63478.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 404

 Score = 43.4 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 47  WRARSAYKLLQ-INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
             +R+A KL + ++            VDLG++PG W+Q         A   RV+A+D   
Sbjct: 244 APSRAAMKLEEALDGLPFEPGRGEVCVDLGAAPGGWTQRLV------ARGARVIAVDPAK 297

Query: 106 MEP----ILGVKFFK 116
           + P       V+  +
Sbjct: 298 LMPELASHPRVRHIQ 312


>gi|108758667|ref|YP_633496.1| hypothetical protein MXAN_5346 [Myxococcus xanthus DK 1622]
 gi|108462547|gb|ABF87732.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 340

 Score = 43.4 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 47  WRARSAYKLLQ-INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
             +R+A KL + ++            VDLG++PG W+Q             +VVA+D   
Sbjct: 179 APSRAAMKLEEALDGLAFEPGRGDVCVDLGAAPGGWTQRLVSR------GAKVVAVDPAR 232

Query: 106 MEP 108
           + P
Sbjct: 233 LMP 235


>gi|311898009|dbj|BAJ30417.1| putative trans-aconitate 2-methyltransferase [Kitasatospora setae
           KM-6054]
          Length = 265

 Score = 43.4 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 19/154 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDL 122
           L     ++DLG  PG+ +    R       + R++ +D     +    G         + 
Sbjct: 31  LPPAPTVLDLGCGPGNSTAALRRRWP----DARLIGLDTSPELLAKARGAD------GEP 80

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG--DFL 180
            +    +     +P     D+         +D      L     + A   L  GG   F 
Sbjct: 81  TAAYREQDVAAYDPAPERPDLIASNAALHWMDTPTADHLELLPRWAAA--LRPGGVIAFQ 138

Query: 181 VKTFQGGTTNDILCLLKKHFQ---KVIHVKPVAS 211
           +       ++ +L  L++  +   ++   +P AS
Sbjct: 139 LPGNFAAPSHTLLADLRRTPRWRDRLAAARPDAS 172


>gi|117921332|ref|YP_870524.1| putative RNA 2'-O-ribose methyltransferase [Shewanella sp. ANA-3]
 gi|166199452|sp|A0KZ99|RLMM_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|117613664|gb|ABK49118.1| conserved hypothetical protein [Shewanella sp. ANA-3]
          Length = 361

 Score = 43.0 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+   ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFAQFVPKEEQEVRVRSGMNAVDLGACPGGWTYQLVRR------GMMVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M   L     VK F+ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMNEKLMETGQVKHFREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A      E+L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVMAILNTMQEILKENG 330


>gi|301783221|ref|XP_002927025.1| PREDICTED: putative methyltransferase NSUN6-like [Ailuropoda
           melanoleuca]
          Length = 469

 Score = 43.0 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 28/140 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF 114
           Q   +I+DL ++PG  +   A +     +   V+A+D +  +            +  +K 
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALM---RDQGEVIALDKIPNKVEKIKQNALLLGLNSIKA 289

Query: 115 FKFDFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS- 160
           F FD       + ++ A G  P           D   S M           +  + +   
Sbjct: 290 FCFDGTKALQLDMVKDAEGKPPFLPESFDRVLLDAPCSGMGQRPNMACSWTLKEVTSYQP 349

Query: 161 LCEAATFFALEMLNIGGDFL 180
           L       A+E+L  GG  +
Sbjct: 350 LQRKLFTVAVELLRPGGVLV 369


>gi|163867875|ref|YP_001609079.1| hemolysin-like protein [Bartonella tribocorum CIP 105476]
 gi|161017526|emb|CAK01084.1| hemolysin-like protein [Bartonella tribocorum CIP 105476]
          Length = 247

 Score = 43.0 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 35/155 (22%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL+   +   I+      +D+G+S G ++QV      ++     V+A+D  
Sbjct: 59  QNYVSRAALKLITALDAFPIVTDKVTAIDVGASTGGFTQVLLERGAAH-----VIAVD-- 111

Query: 105 DMEPILGVKFFKFD--------FLDLD---SWEFIRQAIGGN-PDLVLSDMA-------- 144
                  V   +FD           L+     +F ++ +GG   DL++SD++        
Sbjct: 112 -------VGHHQFDKRLLGSCAITLLEGLNVRDFQQEHLGGREIDLIVSDVSFISLKLAL 164

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            P +   K      + L +       + L  GG  
Sbjct: 165 PPVLSLAKKGAQAVL-LVKPQFEVGRKHLGKGGIL 198


>gi|124481930|gb|ABN11816.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 43.0 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMTEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|264680602|ref|YP_003280512.1| Spermine synthase [Comamonas testosteroni CNB-2]
 gi|262211118|gb|ACY35216.1| Spermine synthase [Comamonas testosteroni CNB-2]
          Length = 421

 Score = 43.0 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK---- 182
            + +A     DL L D+  P      +    +             +L  GG  ++     
Sbjct: 280 ALMEATDERFDLALMDLTDPDTPASALYAPDS-------LARMKRVLAPGGALVLHLGSP 332

Query: 183 TFQGGTTNDILCLLKKHFQKVIHV 206
            F G    +++  L++ F  V   
Sbjct: 333 VFHGPQVAELVRSLRQQFAVVRCY 356


>gi|81982186|sp|Q9YRV3|POLG_YEFVT RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|3851162|gb|AAC72235.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R++DLG   G W   AA     +      +  D    E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH--EK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       +        D +L D+   +             L     + 
Sbjct: 2619 PMNVQSLGWNIITFKDKTDVHPLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWL 2678

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            A  +     +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2679 ACGV----DNFCVKVLAPYMRDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|242213492|ref|XP_002472574.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728368|gb|EED82264.1| predicted protein [Postia placenta Mad-698-R]
          Length = 479

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 45/190 (23%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF-FKFD--FLD-- 121
              R +DLG SPG +S    R    +    + V ID+    P    KF  + D  F +  
Sbjct: 175 KVHRFLDLGCSPGGFSSYLLR----HNRGVQGVGIDL----PNEEAKFPLQIDPTFRESY 226

Query: 122 ----LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT------------MSLCEAA 165
                D   F+ +++     LV+ +   P+  +  +                 + L  + 
Sbjct: 227 RMRYDDIMAFVSRSVNAGTPLVIPNHDDPSTHYDLVIAGAFPVLQGPIPWWHRIQLVLSQ 286

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDILC------LLKKHFQKVIHVKP---VASRAESV 216
                  +  GG  ++      TT   L       LL++ F  V   K     A R    
Sbjct: 287 ILIVFANIETGGSAVIAI----TTKAFLWIVDVIGLLRQSFAAVTAHKTGKLHAVRTS-- 340

Query: 217 EMFLLAKGFR 226
             +L+ +GFR
Sbjct: 341 -CYLVCRGFR 349


>gi|242221053|ref|XP_002476283.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724486|gb|EED78525.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1500

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 45/190 (23%)

Query: 67   SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF-FKFD--FLD-- 121
               R +DLG SPG +S    R    +    + V ID+    P    KF  + D  F +  
Sbjct: 1196 KVHRFLDLGCSPGGFSSYLLR----HNRGVQGVGIDL----PNEEAKFPLQIDPTFRESY 1247

Query: 122  ----LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT------------MSLCEAA 165
                 D   F+ +++     LV+ +   P+  +  +                 + L  + 
Sbjct: 1248 RMRYDDIMAFVSRSVNAGTPLVIPNHDDPSTHYDLVIAGAFPVLQGPIPWWHRIQLVLSQ 1307

Query: 166  TFFALEMLNIGGDFLVKTFQGGTTNDILC------LLKKHFQKVIHVKP---VASRAESV 216
                   +  GG  ++      TT   L       LL++ F  V   K     A R    
Sbjct: 1308 ILIVFANIETGGSAVIAI----TTKAFLWIVDVIGLLRQSFAAVTAHKTGKLHAVRTS-- 1361

Query: 217  EMFLLAKGFR 226
              +L+ +GFR
Sbjct: 1362 -CYLVCRGFR 1370


>gi|307720806|ref|YP_003891946.1| hemolysin A [Sulfurimonas autotrophica DSM 16294]
 gi|306978899|gb|ADN08934.1| hemolysin A [Sulfurimonas autotrophica DSM 16294]
          Length = 235

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
             +D  V+  +   + +R+A+KL +   +  +    +  +D+GSS G ++QV        
Sbjct: 43  QQSDE-VRVLEHRSYVSRAAFKLDEFLNETGLHVKGKTALDIGSSTGGFTQVLLERGAGK 101

Query: 93  ANNTRV 98
            +   V
Sbjct: 102 VSCVDV 107


>gi|302674479|ref|XP_003026924.1| hypothetical protein SCHCODRAFT_113881 [Schizophyllum commune H4-8]
 gi|300100609|gb|EFI92021.1| hypothetical protein SCHCODRAFT_113881 [Schizophyllum commune H4-8]
          Length = 344

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 24/177 (13%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
            +DLG  PG +S    +           +      +         +  + DL  +     
Sbjct: 78  FLDLGCCPGGFSSYILKKNPEACGVGVSLPSGHDYLLEEEFRPRHELCWADLLRYPMWES 137

Query: 131 AIGG---------------NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
             G                + DLV+ D            ++    L       AL+ +  
Sbjct: 138 RCGDRMKNFDDLPWGLRCRHFDLVILDGHPLRSQKADTSNVGPRLLVTQLL-IALQTVRR 196

Query: 176 GGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKP---VASRAESVEMFLLAKGFRK 227
           GG  + K        T  IL +L     ++   KP    A+R      +++A+G ++
Sbjct: 197 GGTIIAKLSGVHRPDTQAILWMLDALSDRLTTCKPVSMHATRDTF---YVVAEGMQR 250


>gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
 gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
          Length = 455

 Score = 43.0 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 28/163 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILG------VKF 114
           +    ++DL ++PG  ++    +  +      + A DI       M+ IL       VK 
Sbjct: 264 KPGEVVIDLCAAPGGKTEHMGELMNNTGI---IYAFDIDKTRIKRMQEILNRCGISIVKI 320

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAAT 166
           F  D     + E + + I     +     +  TI   +    R           L     
Sbjct: 321 FNED--ARKATEILGRNIADKVLVDAPCTSSGTIMKNQELRWRITEDEVNKAAKLQYELL 378

Query: 167 FFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKHFQKVIHV 206
             A+E++  GG  L      F+    + I  +L+ H   V  V
Sbjct: 379 ETAIELVKPGGKILYTTCSLFREENEDVIEKVLRNH-SNVKIV 420


>gi|81965460|sp|Q98803|POLG_YEFVI RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|1314775|gb|AAA99812.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 43.0 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R+ DLG   G W   AA     +      +       E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVTDLGCGRGGWCYYAAAQKEVSGVKGFTLGR--EGHEK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       I        D +L D+   +      +  RTM         
Sbjct: 2619 PMNVRSLGWNIITFKDKTDIHHLEPVKCDTLLCDIGESSSS-SVTEGERTM----RVLDT 2673

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G  +F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2674 VEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|225164513|ref|ZP_03726766.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224800878|gb|EEG19221.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 309

 Score = 43.0 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI 64
            G+S  RGL   + +      +R     H N  + + A      +RS  K   I E + +
Sbjct: 85  TGASGARGLFVFLTDFQKAHVAR---TAHFNGQH-RMADDPLAPSRSYLK---IEEAYAV 137

Query: 65  LQS----NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           L      +  +VDLG++PG WS  AA+         RV+AID   ++
Sbjct: 138 LGREPAADETVVDLGAAPGGWSYSAAKR------GARVIAIDNGPLK 178


>gi|299532835|ref|ZP_07046222.1| Spermine synthase [Comamonas testosteroni S44]
 gi|298719059|gb|EFI60029.1| Spermine synthase [Comamonas testosteroni S44]
          Length = 421

 Score = 43.0 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK---- 182
            + +A     DL L D+  P      +           +      +L  GG  ++     
Sbjct: 280 ALMEATDERFDLALMDLTDPDTPASALYA-------LDSLARMKRVLAPGGALVLHLGSP 332

Query: 183 TFQGGTTNDILCLLKKHFQKVIHV 206
            F G    +++  L++ F  V   
Sbjct: 333 VFHGPQVAELVRSLRQQFAVVRCY 356


>gi|166710749|ref|ZP_02241956.1| putative RNA 2'-O-ribose methyltransferase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 347

 Score = 43.0 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RSA KL +         E+  ++    R  DLG++PG W+ V  R  
Sbjct: 180 APSRSALKLDEALLTLLTPEEREALVTPGMRAADLGAAPGGWTWVLTRQH 229


>gi|88607828|ref|YP_505407.1| hypothetical protein APH_0830 [Anaplasma phagocytophilum HZ]
 gi|88598891|gb|ABD44361.1| hypothetical protein APH_0830 [Anaplasma phagocytophilum HZ]
          Length = 58

 Score = 42.6 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
                + K        +    +   F   +   P +SR ++ E++L A  F+
Sbjct: 6   PSSSLVAKLLHREYEQEFKRSIMMCFDIFLRFNPKSSRKDTSEIYLAALKFK 57


>gi|269930192|gb|ACZ53986.1| lambda-2 protein [Mammalian orthoreovirus 2]
          Length = 1289

 Score = 42.6 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWTQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +   + GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K              K        + +KP  +   +VE+F +A G
Sbjct: 614 IKINFPTRAVWYYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|113472823|gb|ABI35899.1| lambda-2 protein [Mammalian orthoreovirus]
          Length = 1289

 Score = 42.6 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWTQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +   + GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K              K        + +KP  +   +VE+F +A G
Sbjct: 614 IKINFPTRAVWYYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|282164849|ref|YP_003357234.1| hypothetical protein MCP_2179 [Methanocella paludicola SANAE]
 gi|282157163|dbj|BAI62251.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 192

 Score = 42.6 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+     VD+G   G ++  AARI G      RV  IDI   E  LGV   K   L L  
Sbjct: 28  LKPGMTFVDIGCGQGYFALPAARIVGPKG---RVYGIDID--EEALGVLGRKAADLGLMI 82

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                +          +D+ +  I     +        E     AL ML  GG  
Sbjct: 83  ETIAGEGENMVACEGCADVVFFGICLHDFEDP------EKVLANALRMLKPGGKL 131


>gi|312032260|dbj|BAJ33426.1| large protein [Mumps virus]
          Length = 2261

 Score = 42.6 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIKILRSSYSDPNNHEVYIIAT 1996


>gi|299472325|emb|CBN77513.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 463

 Score = 42.6 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 22/123 (17%)

Query: 44  LEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            +    R+ YK+ ++  +  +    +   +D+G++PG W+   A      +   RV+++D
Sbjct: 123 EDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLA------SKCRRVLSVD 176

Query: 103 ILDME----PILGVKFFK----------FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
             +++     +  V   +           D L  D+    R++ GG  +    D    T 
Sbjct: 177 PAELDSAVLALPNVVHVQKLIEAAKGTLLDLLAEDAPAHERESRGGEGE-ERDDGGGRTH 235

Query: 149 GHR 151
             R
Sbjct: 236 DGR 238


>gi|319425688|gb|ADV53762.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
           200]
          Length = 361

 Score = 42.6 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGQFVPKEEQEERIRSGMNAVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDEKLMETGQVKHYREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A       +L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVTAILETMQTILKENG 330


>gi|254447252|ref|ZP_05060719.1| RNA 2-O-ribose methyltransferase, SAM-dependent domain [gamma
           proteobacterium HTCC5015]
 gi|198263391|gb|EDY87669.1| RNA 2-O-ribose methyltransferase, SAM-dependent domain [gamma
           proteobacterium HTCC5015]
          Length = 381

 Score = 42.6 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 28/139 (20%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         ++   LQ   + VDLG++PG W+            + RV 
Sbjct: 192 APSRSTLKLEEAWRHFLSPAKRKAYLQPGMKAVDLGAAPGGWT------WQLVNQDIRVA 245

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           AID   M+  L     V+  + D          +       D ++ DM    I    +  
Sbjct: 246 AIDNGPMDEALMDSGLVEHIQEDGF--------KYWPQKKVDWLVCDMVEKPIRVADLMA 297

Query: 156 LRTMSLCEAATFFALEMLN 174
                L +    FA+  L 
Sbjct: 298 H---WLLKRRCEFAIFNLK 313


>gi|239831305|ref|ZP_04679634.1| hemolysin A [Ochrobactrum intermedium LMG 3301]
 gi|239823572|gb|EEQ95140.1| hemolysin A [Ochrobactrum intermedium LMG 3301]
          Length = 253

 Score = 42.6 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD- 105
           + +R+A KL+   +   +    R  +D+G+S G ++QV     G+N      V  D L  
Sbjct: 66  YVSRAALKLIAALDHFGLDVKGRTALDIGASTGGFTQVLLER-GANHVLAIDVGHDQLHE 124

Query: 106 -MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            +     V   +   L+  + EF     G   D V+SD++
Sbjct: 125 TLRADPRVTNKEG--LNARALEF-SDLDGREIDCVVSDVS 161


>gi|120599618|ref|YP_964192.1| putative RNA 2'-O-ribose methyltransferase [Shewanella sp. W3-18-1]
 gi|166199453|sp|A1RLU3|RLMM_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|120559711|gb|ABM25638.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
          Length = 361

 Score = 42.6 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGQFVPKEEQEERIRSGMNAVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDEKLMETGQVKHYREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A       +L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVTAILETMQTILKENG 330


>gi|325959584|ref|YP_004291050.1| type 11 methyltransferase [Methanobacterium sp. AL-21]
 gi|325331016|gb|ADZ10078.1| Methyltransferase type 11 [Methanobacterium sp. AL-21]
          Length = 258

 Score = 42.6 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 66/214 (30%)

Query: 30  LNRHINDPYVQ---------------------RAQLEGWRARSAYKLLQI--NEKHQI-- 64
           +  HI D Y +                     +A+  G+   S   L  I  N  + +  
Sbjct: 12  IKEHIKDRYSKIAIKKSDNDSCTSCSVNSVIEQAKSAGY---SVEDLKSIPENAMYGLGC 68

Query: 65  --------LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK 116
                   L+    ++DLGS  G    +AA   G +    +V+ I               
Sbjct: 69  GNPTALVELKPGDVVLDLGSGGGIDVFLAANKVGESG---KVIGI--------------- 110

Query: 117 FDFLDLDSWEFIRQAIGGNPDLV------LSDMAYPTIGHRKIDHLRTMSLC---EAATF 167
            D  +       + A+ G  + V      + D+   T     I     ++L      A  
Sbjct: 111 -DMTEEMVRNATKNALEGKYENVEFKLGEIEDLPIETDSIDVIISNCVINLTPDKLVAYK 169

Query: 168 FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQ 201
            A  +L  GG  L       T  ++   + + FQ
Sbjct: 170 EAFRVLKPGGKIL--VSDLVTEEELPKNIMQKFQ 201


>gi|219128640|ref|XP_002184516.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403966|gb|EEC43915.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 499

 Score = 42.6 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 20/106 (18%)

Query: 49  ARSAYKLLQI------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           +R+ YKL Q+      +E+ ++       +DLG+SPG W+QV   +    A   +VVA+D
Sbjct: 310 SRAYYKLEQVWHDYLSSERERLCLDQGAGLDLGASPGGWTQVLVHL----AQLPKVVAVD 365

Query: 103 I----LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
                  +  +  V           + E       G   +V+ D +
Sbjct: 366 PAALADRVRKLSHVTHL------ATTLENANLQAHGPYSMVVCDAS 405


>gi|15828642|ref|NP_326002.1| hemolysin A [Mycoplasma pulmonis UAB CTIP]
 gi|14089584|emb|CAC13344.1| HEMOLYSIN A [Mycoplasma pulmonis]
          Length = 238

 Score = 42.6 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R AYKLLQ  E  ++   ++ ++D+GSS G +SQVA  I G+          + LD 
Sbjct: 54  YVSRGAYKLLQAIEDFKLDFKDKIVLDIGSSTGGFSQVAL-INGAKKVYALDSGTNQLDY 112

Query: 107 E 107
           +
Sbjct: 113 K 113


>gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 421

 Score = 42.6 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---------LDMEPILGVKFFK 116
           ++  RI+DL ++PG     A  +        ++ AID+          ++  +    F +
Sbjct: 235 KAGDRILDLCAAPGG---KAFDLAKLMQGRGQLTAIDLPGSRINRLRENLAKLESEDF-Q 290

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG-----------HRKIDHLRTMSLCEAA 165
            + ++ D  E  R+ +    D V+ D      G            R+ D      L    
Sbjct: 291 TEIIEEDVLELNREQLPAPFDCVMLDAPCSNTGVIQRRIDVKWRLRQKDITACAKLQLQL 350

Query: 166 TFFALEMLNIGGDFL 180
              A   +  GG  +
Sbjct: 351 LHSASRFVKNGGRLV 365


>gi|289548511|ref|YP_003473499.1| hemolysin A [Thermocrinis albus DSM 14484]
 gi|289182128|gb|ADC89372.1| hemolysin A [Thermocrinis albus DSM 14484]
          Length = 258

 Score = 42.6 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 25/196 (12%)

Query: 44  LEGWR--ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
            EG R  +R  YKL    E+ Q+       +D+GSS G ++    +         RV A+
Sbjct: 51  KEGLRYVSRGGYKLEYALERFQLDVKGMVALDVGSSTGGFTHCLLQR-----GVERVYAV 105

Query: 102 DI--LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY-------PTIGHRK 152
           D+    M+ +L        + + D+ E   + I    DL+  D+++       P +    
Sbjct: 106 DVGRGQMDYLLRQDPRVILYEETDARELTEEHIPEKVDLITVDVSFISATKVLPHVVRFL 165

Query: 153 IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI-----LCLLKKHFQKVIHVK 207
            +    + L +         L  G   +VK  +      +     L  L  +   +I  K
Sbjct: 166 KEDGFLLLLVKPQFELDPSRLRKG---IVKKEEDKVEAILKVSQTLKDLGFYPLGIIKAK 222

Query: 208 PVASRAESVEMFLLAK 223
           P  +   + E FLLAK
Sbjct: 223 PKGA-KGNEEFFLLAK 237


>gi|317143466|ref|XP_001819496.2| TAM domain methyltransferase [Aspergillus oryzae RIB40]
          Length = 402

 Score = 42.6 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 36/147 (24%)

Query: 55  LLQINEKHQILQSN-------------RRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           L +++ +H +++               +RI+D+G+  G W    A I         ++  
Sbjct: 127 LDRLDMQHHLIKMVNGGRLFFAPLEHPKRILDIGTGSGIWPIEMAPIFPEAE----IIGT 182

Query: 102 DILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           D+  ++P      V F   D  +        + + G     L    + +        L  
Sbjct: 183 DLSPVQPNEVPENVHFLVDDATED-------EWLWGPDHFDLIHTGHMSGSLPSFKEL-- 233

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQ 185
                     AL  L  GG      F 
Sbjct: 234 -------LRKALNHLKPGGYMECHEFD 253


>gi|238487596|ref|XP_002375036.1| TAM domain methyltransferase, putative [Aspergillus flavus
           NRRL3357]
 gi|220699915|gb|EED56254.1| TAM domain methyltransferase, putative [Aspergillus flavus
           NRRL3357]
          Length = 331

 Score = 42.6 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 36/147 (24%)

Query: 55  LLQINEKHQILQSN-------------RRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           L +++ +H +++               +RI+D+G+  G W    A I         ++  
Sbjct: 56  LDRLDMQHHLIKMVNGGRLFFAPLEHPKRILDIGTGSGIWPIEMAPIFPEAE----IIGT 111

Query: 102 DILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           D+  ++P      V F   D  +        + + G     L    + +        L  
Sbjct: 112 DLSPVQPNEVPENVHFLVDDATED-------EWLWGPDHFDLIHTGHMSGSLPSFKEL-- 162

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQ 185
                     AL  L  GG      F 
Sbjct: 163 -------LRKALNHLKPGGYMECHEFD 182


>gi|146292388|ref|YP_001182812.1| putative RNA 2'-O-ribose methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|166199451|sp|A4Y4Y0|RLMM_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|145564078|gb|ABP75013.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
          Length = 361

 Score = 42.6 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGQFVPKEEQEERIRSGMNAVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDEKLMETGQVKHYREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A       +L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVTAILETMQTILKENG 330


>gi|83767355|dbj|BAE57494.1| unnamed protein product [Aspergillus oryzae]
          Length = 321

 Score = 42.6 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 36/147 (24%)

Query: 55  LLQINEKHQILQSN-------------RRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           L +++ +H +++               +RI+D+G+  G W    A I         ++  
Sbjct: 46  LDRLDMQHHLIKMVNGGRLFFAPLEHPKRILDIGTGSGIWPIEMAPIFPEAE----IIGT 101

Query: 102 DILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           D+  ++P      V F   D  +        + + G     L    + +        L  
Sbjct: 102 DLSPVQPNEVPENVHFLVDDATED-------EWLWGPDHFDLIHTGHMSGSLPSFKEL-- 152

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQ 185
                     AL  L  GG      F 
Sbjct: 153 -------LRKALNHLKPGGYMECHEFD 172


>gi|310796602|gb|EFQ32063.1| hypothetical protein GLRG_07207 [Glomerella graminicola M1.001]
          Length = 386

 Score = 42.6 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 32/183 (17%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAI--------------------DILDMEPI 109
           RI+D+G +PG +   A R+          + I                    D+  +   
Sbjct: 123 RILDMGMAPGGFLATAMRLNPRAKALGLSLPIANGGYPSLVPEREDIDLRYLDVTMLAAD 182

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS----LCEAA 165
           LG +    D    D+ +F+ +         L   +   +   ++   R ++    L  + 
Sbjct: 183 LGFEDIPAD--HPDADKFLPRQFEPGRKFDLVICSSSVVREHEVGEYRKITEPRRLTTSQ 240

Query: 166 TFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV--ASRAESVEMFLL 221
               LE L  GG  +V     +  TT   L    K  +K+   KP    ++  S   +++
Sbjct: 241 LALGLERLIPGGTMVVLFHKVEAWTTVVQLYRFSKFCEKLFLFKPTKGHTKRSSF--YMV 298

Query: 222 AKG 224
           A G
Sbjct: 299 ATG 301


>gi|124481956|gb|ABN11829.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.6 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPVDTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMTEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|227821073|ref|YP_002825043.1| hemolysin-like protein [Sinorhizobium fredii NGR234]
 gi|227340072|gb|ACP24290.1| hemolysin-like protein [Sinorhizobium fredii NGR234]
          Length = 251

 Score = 42.6 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           + + +R+A KL+   +      + +  +D+G+S G +++V  +   ++     V      
Sbjct: 63  QDYVSRAALKLVGALDHFGFDPAGQICLDIGASTGGFTEVLLKRGAAHVVAVDVGHGQMH 122

Query: 104 LDMEPILGVKFFKF 117
             +    GV   + 
Sbjct: 123 PRIAEDPGVTNIEG 136


>gi|299470360|emb|CBN78409.1| SAM-dependent methyltransferases [Ectocarpus siliculosus]
          Length = 422

 Score = 42.6 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 12/146 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +    IVD G   G+ +++ A    S     RV+ +D+      +G         +  + 
Sbjct: 221 EKGGVIVDFGCGVGTSTRLLAE---SMPGARRVIGMDLSPYMIAVG----NHHNREKKTG 273

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             +    G   D  L D     +    + H             A  +L  GG   +    
Sbjct: 274 RRVSLVYGDVADTRLPDGGTSLVSCTYLLHEMPDEAVRDVLAEAYRLLKPGGSLAIM--D 331

Query: 186 GGTTNDILCLLKK---HFQKVIHVKP 208
                     L+     F  V   +P
Sbjct: 332 MDPDAPGYKKLRSNPFLFSIVRATEP 357


>gi|259018725|gb|ACV89824.1| S-adenosyl-L-methionine:phosphoethanolamine N-methyltransferase
           [Triticum aestivum]
          Length = 505

 Score = 42.2 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 33/177 (18%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-----ILQS--NRRIVDLGSSPG 79
           + +   H  D  V+        +R+A     ++++ +     +L S   + +++LG+  G
Sbjct: 28  KRYWEEHSRDLTVE---AMMLDSRAA----DLDKEERPEILSLLPSYEGKSVLELGAGIG 80

Query: 80  SWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136
            ++   A+  G   +      V+  +           F   D    D             
Sbjct: 81  RFTGELAKTAGHVLAMDFIESVIKKNESINGHYKNASFMCADVTSPD------------- 127

Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQGGTTND 191
            LV+ D +   I    +    + +  E      ++ L +GG   F    F     + 
Sbjct: 128 -LVIEDNSIDLIFSNWLLMYLSDAEVEKLVERMVKWLKVGGHIFFRESCFHQSGDSK 183


>gi|282855619|ref|ZP_06264933.1| hemolysin A [Pyramidobacter piscolens W5455]
 gi|282586549|gb|EFB91803.1| hemolysin A [Pyramidobacter piscolens W5455]
          Length = 270

 Score = 42.2 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           GW +R A+KLL   E+  +    R  +D+G+S G ++QV  +  G+       V   +LD
Sbjct: 63  GWVSRGAHKLLTAIERFHLKLEGRVCLDVGASTGGFTQVMLK-YGAAKVYAVDVGYGLLD 121

Query: 106 MEPILGVKFFKFDFLDLDSWEFIR-QAIGGNPDLVLSDMA 144
                  +      ++  +  F+  +     P  V SD +
Sbjct: 122 WSLRTDPRVV---VMERRNARFLTGEMFSPRPGFVCSDAS 158


>gi|296164594|ref|ZP_06847161.1| cytotoxin/hemolysin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900013|gb|EFG79452.1| cytotoxin/hemolysin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
             GW +R A+KL+   +   I  + RR +D G+S G +++V      +      V     
Sbjct: 59  ERGWVSRGAHKLIGALDAFGIPVAGRRCLDAGASTGGFTEVLLHRGAAEVVAVDVGYGQL 118

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +      +  +   +AIGG  DL+++D++
Sbjct: 119 AWSLRCDPRVVVVE----RTNVRDLSPEAIGGPVDLIVADLS 156


>gi|322705090|gb|EFY96679.1| UMTA methyltransferase family protein [Metarhizium anisopliae ARSEF
           23]
          Length = 324

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 45/157 (28%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           ++IVDLG+  G W+   A    S     RV+  D+  ++P       +F   D  D    
Sbjct: 87  QKIVDLGTGAGYWALDVAEKFPS----ARVIGTDLSPIQPQWAPPNTEFRVEDLDDE--- 139

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC------EAATFFALEMLNIGGDF 179
                                +  +   D + T +L       +     A E L  GG  
Sbjct: 140 -----------------HRPWSSIYAGADAIHTRALLPTLRNPKLVLRRAFENLKPGGWV 182

Query: 180 LVK-----TF-------QGGTTNDILCLLKKHFQKVI 204
                    F       +G   + +  L+   F +V 
Sbjct: 183 ECHEIISCVFSEDGAVNRGHPLHKMYDLINGSFSQVY 219


>gi|317141135|ref|XP_001817388.2| UMTA methyltransferase family protein [Aspergillus oryzae RIB40]
          Length = 270

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 32/133 (24%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           ++ + I+DLG+  G W+   A    S     +V+  D+  ++P      V+F   DF   
Sbjct: 32  ENPQTILDLGTGTGIWAIDVADQFPS----AKVIGNDLSPIQPSWVPPNVEFVVDDF--- 84

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA----ATFFALEMLNIGGD 178
                              D+      +    H RT+S C          A + L   G 
Sbjct: 85  ------------------EDVWMHDRNYFDYVHARTISGCVQDWGRLMKQAYDHLKPSGY 126

Query: 179 FLVKTFQGGTTND 191
           F    F     +D
Sbjct: 127 FECAEFVIDAFSD 139


>gi|238482447|ref|XP_002372462.1| UMTA methyltransferase family protein [Aspergillus flavus NRRL3357]
 gi|220700512|gb|EED56850.1| UMTA methyltransferase family protein [Aspergillus flavus NRRL3357]
          Length = 375

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 32/133 (24%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           ++ + I+DLG+  G W+   A    S     +V+  D+  ++P      V+F   DF   
Sbjct: 101 ENPQTILDLGTGTGIWAIDVADQFPS----AKVIGNDLSPIQPSWVPPNVEFVVDDF--- 153

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA----ATFFALEMLNIGGD 178
                              D+      +    H RT+S C          A + L   G 
Sbjct: 154 ------------------EDVWMHDRNYFDYVHARTISGCVQDWGRLMKQAYDHLKPSGY 195

Query: 179 FLVKTFQGGTTND 191
           F    F     +D
Sbjct: 196 FECAEFVIDAFSD 208


>gi|29833261|ref|NP_827895.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29610383|dbj|BAC74430.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 265

 Score = 42.2 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 26/126 (20%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLD 121
              R +++G+  GS +   A   G + +   V+A DI       +     V+  + D   
Sbjct: 42  PGMRCLEVGAGAGSVAAWLAERVGPDGS---VLATDIEPRWLGELPAAGNVRVVRHDITQ 98

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D  E       G  DL+ + +    +  R+           AA    +  L  GG  ++
Sbjct: 99  EDLPE-------GRFDLIHARLVLLHLPERQ-----------AALDRMVRALRPGGRLVL 140

Query: 182 KTFQGG 187
             F  G
Sbjct: 141 DEFDCG 146


>gi|124481924|gb|ABN11813.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPRIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|330685297|gb|EGG96958.1| methyltransferase domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 244

 Score = 42.2 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 29/133 (21%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG-- 111
           KLL   ++  I +   RI+D+G + G  +Q+ A   GS      +     L  + +    
Sbjct: 10  KLL---DRANI-KPGMRILDIGCATGEVTQLVAERVGSQGEVIGIDMNQTLLEKAVENNQ 65

Query: 112 ---VKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
              V + + D     ++       IG    + L D                      A  
Sbjct: 66  YNHVSYQQHDIYQLPETLGQFDVIIGRRVLMYLPD-------------------VVQALR 106

Query: 168 FALEMLNIGGDFL 180
              + L   G F 
Sbjct: 107 ILKDFLKPEGIFC 119


>gi|324029030|gb|ADY16667.1| lambda-2 protein [Mammalian orthoreovirus]
          Length = 1289

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWTQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +   + GG F+
Sbjct: 556 RGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K              K        + +KP  +   +VE+F +A G
Sbjct: 614 IKINFPTRAVWYYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|224000615|ref|XP_002289980.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975188|gb|EED93517.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 536

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 16/110 (14%)

Query: 49  ARSAYKLLQINEKHQILQSNRRI--------------VDLGSSPGSWSQVAARITGSNAN 94
           +R+ YKL Q+ +   ILQ                   +D+G+SPG W+QV          
Sbjct: 315 SRAYYKLAQLFDDDDILQGISETNTINPSQLLSHGAGMDVGASPGGWTQVLHNTLHIPTI 374

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            +  + +    +  + GV   + D     + + +         +++ D  
Sbjct: 375 VSIDLGVLAQRVLDLPGVYHLRADMCSAKAKQVMAHH--APYSVIVCDAC 422


>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
 gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
 gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
 gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
 gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
          Length = 455

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 31/183 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILGVKFFKF 117
           +    I+D+ S+PG  S   A+I  +      V++ D        I   +  LG++  K 
Sbjct: 258 KPGETILDVCSAPGGKSTHIAQIMKNRGT---VISRDIHEHKIKLIEQAKERLGLEIIKT 314

Query: 118 DFLDLDSW-----EFIRQAIGGNPD--LVLSDMAYPTI-GHRKIDHLRTMSLCEAATFFA 169
           +  D         E I + +   P     +              D    +SL       A
Sbjct: 315 EVFDAAVLDGKLIEKIDRVLVDAPCTGFGIIRRKPDIKWSKNSEDKAEIVSLQHKILSTA 374

Query: 170 LEMLNIGGDFLVKTFQGGTTND------ILCLLKKHF-QKVIHVKPVASRAESVEMFLLA 222
            + +  GG  +  T       +       +   K  + + +    P A R ES       
Sbjct: 375 SKYVKDGGVLVYSTCTLEPEENEKAVERFIEENKDFYLEDITEFLPDALRKESA-----G 429

Query: 223 KGF 225
           KG+
Sbjct: 430 KGY 432


>gi|114563945|ref|YP_751459.1| putative RNA 2'-O-ribose methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|122299150|sp|Q07ZE4|RLMM_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|114335238|gb|ABI72620.1| conserved hypothetical protein [Shewanella frigidimarina NCIMB 400]
          Length = 362

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 46/171 (26%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+    +S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGAFLTKEEQETRCRSGLNAVDLGACPGGWTYQLVRR------GMMVA 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           A+D   M+P L     VK ++ D    +        +       + DM        ++  
Sbjct: 237 AVDNGPMDPKLMETGQVKHYRADGFRFEPPRKNVYWL-------VCDMVEKPARVAELME 289

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
              +                 G F    F      ++   +K  +++V  +
Sbjct: 290 AWAI----------------NGWFKEAIF------NLKLPMKSRYKEVSVI 318


>gi|294960120|gb|ADF49557.1| L protein [Mumps virus]
          Length = 2261

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|254674413|emb|CBA10125.1| large protein [Mumps virus strain Jeryl Lynn]
          Length = 2261

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|218282381|ref|ZP_03488663.1| hypothetical protein EUBIFOR_01245 [Eubacterium biforme DSM 3989]
 gi|218216667|gb|EEC90205.1| hypothetical protein EUBIFOR_01245 [Eubacterium biforme DSM 3989]
          Length = 243

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 85/211 (40%), Gaps = 39/211 (18%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           H  D +V         +R A+KL    +K+ +  SN+ ++D+G+S G ++ V  R     
Sbjct: 53  HTQDEFV---------SRGAFKLKGCLDKYNVDISNQVVLDIGASTGGFTDVCLRYGAK- 102

Query: 93  ANNTRVVAIDI------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
               +V A+D+       +++    V   +      ++ E +        D +  D+++ 
Sbjct: 103 ----KVYALDVGHLQLAKELDQDCRVVKMEGH----NAREIVPDWFDEPIDFMCMDVSFI 154

Query: 147 T--IGHRKIDHLRTMS----LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           +     + + H+ ++S    L +         LN  G  +          D+   L +++
Sbjct: 155 SCKTILKHVLHVLSISHIAILVKPQFECGPAALNKHGVLINSKLALQIVEDVKAFLFQYY 214

Query: 201 QKVIHVKPVAS----RAESVEMFLL-AKGFR 226
           + V  + P  S    R+ + E +++ AK  R
Sbjct: 215 KSVEAM-P--SILEGRSGNQE-YMVYAKDLR 241


>gi|32172471|gb|AAP74199.1| large protein [Mumps virus]
          Length = 2261

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|19070177|gb|AAL83746.1|AF345290_9 large protein [Mumps virus strain Jeryl Lynn]
 gi|313840454|gb|ADR82178.1| viral polymerase [Mumps virus]
          Length = 2261

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|7861769|gb|AAF70396.1|AF201473_9 L [Mumps virus]
 gi|15077512|gb|AAK83225.1| large protein [Mumps virus strain Jeryl Lynn]
 gi|224482368|gb|ACN50024.1| viral polymerase [Mumps virus]
 gi|224482378|gb|ACN50033.1| viral polymerase [Mumps virus]
 gi|224482388|gb|ACN50042.1| viral polymerase [Mumps virus]
          Length = 2261

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|317049319|ref|YP_004116967.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pantoea sp. At-9b]
 gi|316950936|gb|ADU70411.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pantoea sp. At-9b]
          Length = 366

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 17/87 (19%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
             N P+     +        +RS  KL +        +E  + L S    VDLG+ PG W
Sbjct: 166 QNNSPFYMGIPRLKFPSDAPSRSTLKLEEAFHVFIPADEWDERLGSGMWAVDLGACPGGW 225

Query: 82  SQVAARITGSNANNTRVVAIDILDMEP 108
           +    +       +  V A+D   M P
Sbjct: 226 TYQLVKR------SMMVYAVDNGPMAP 246


>gi|171909201|gb|ACB58159.1| polyprotein [St. Louis encephalitis virus]
          Length = 3430

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|169667521|gb|ABN11823.2| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481926|gb|ABN11814.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481936|gb|ABN11819.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481952|gb|ABN11827.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481942|gb|ABN11822.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481962|gb|ABN11832.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|124481920|gb|ABN11811.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|86212473|gb|ABC87765.1| polyprotein [St. Louis encephalitis virus]
          Length = 3430

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 32/198 (16%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTF--QGGTTNDILCLLKKHFQKV 203
                 +++  RT            E L  G   F +K          + L  L++ +   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVLCPYMPKIIEKLEKLQRKYGGG 2729

Query: 204  IHVKPVASRAESVEMFLL 221
            +   P+ SR  + EM+ +
Sbjct: 2730 LVRVPL-SRNSTHEMYWV 2746


>gi|241956558|ref|XP_002420999.1| ribosomal RNA methyltransferase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223644342|emb|CAX41155.1| ribosomal RNA methyltransferase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 370

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 54  KLLQINEKHQILQSNRR-IVDLGSSPGSWSQVAARI---------TGSNANNTRVVAIDI 103
           K+  ++ + +IL  ++  I++LG  P +W                         ++  DI
Sbjct: 69  KIKNLDRRFKILNKSQTKILELGFIPSNWLIYIRDTVARLHNLSDPEKIHQKCHILGFDI 128

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           L   P +GV   + +     + + I      
Sbjct: 129 LFGSPPIGVSSIQGNIFSKLAHKNIVNHFKE 159


>gi|118617311|ref|YP_905643.1| cytotoxin/hemolysin, TlyA [Mycobacterium ulcerans Agy99]
 gi|7340781|emb|CAB83047.1| putative haemolysin [Mycobacterium ulcerans]
 gi|118569421|gb|ABL04172.1| cytotoxin/hemolysin, TlyA [Mycobacterium ulcerans Agy99]
          Length = 281

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
             GW +R A+KL+   +   I    RR +D G+S G +++V      +      V     
Sbjct: 59  ERGWVSRGAHKLIGALDAFGIDVHGRRCLDAGASTGGFTEVLLDRGAAEVVAADVGYGQL 118

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +      +  +    AIGG  DLV++D++
Sbjct: 119 AWSLRTDPRVIVIE----RTNVRDLSPAAIGGQVDLVVADLS 156


>gi|313840444|gb|ADR82169.1| viral polymerase [Mumps virus]
          Length = 2261

 Score = 42.2 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGLPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTVLWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|209548167|ref|YP_002280084.1| hemolysin A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533923|gb|ACI53858.1| hemolysin A [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 248

 Score = 42.2 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 17/127 (13%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           + + +R+A KL    E  ++  +    +D+G+S G +++V  +   ++     V      
Sbjct: 61  QDYVSRAALKLASALEHFRLDPAGHHCLDIGASTGGFTEVLLQRGAAHVTAIDVGHGQMH 120

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
             +     V   +     L++     + IG   D ++SD++             ++ L  
Sbjct: 121 PRIAADPRVTNKEG----LNARHLTAEDIGEPADFIVSDVS-----------FISLKLAL 165

Query: 164 A-ATFFA 169
           A A   A
Sbjct: 166 APALDIA 172


>gi|319892211|ref|YP_004149086.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 433

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 22/166 (13%)

Query: 55  LLQINEK-------HQILQSNRRIVDLGSSPGSWSQVAARITGSNAN--NTRVVAIDILD 105
           L+ I +K       +  LQ    ++D  S+PG  +   A I         T V A  I  
Sbjct: 228 LISIQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHIAEILNGQGTVLATDVHAHKIQL 287

Query: 106 ME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           ++       + G++  + D       +F +  +   P   L  + +       I      
Sbjct: 288 IDHNIRKLHLTGIRAMQHDATQPYDQQFDKVLLDA-PCSGLGVLRHKPEIKYVITPQDVK 346

Query: 160 SLCEAATFFALEM---LNIGGDFL---VKTFQGGTTNDILCLLKKH 199
            L +        +   L  GG  +       Q    N I   LK H
Sbjct: 347 GLVDLQLRIIDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSH 392


>gi|289594381|gb|ADD11994.1| lambda-2 protein [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 42.2 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 556 RGAVVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLSSCMHATAPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           VK      T       K        + +KP  +   +VE+F +A G
Sbjct: 614 VKINFPTRTVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|302676291|ref|XP_003027829.1| hypothetical protein SCHCODRAFT_237833 [Schizophyllum commune H4-8]
 gi|300101516|gb|EFI92926.1| hypothetical protein SCHCODRAFT_237833 [Schizophyllum commune H4-8]
          Length = 264

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL-- 122
           L     ++D  +  G W+  AA    +   +   +      + P    +F   D   L  
Sbjct: 43  LSPGMNVLDSAAGTGVWTLQAAAQHPNAKFSGIDIESRDFPISPPSNARFLVEDITALPE 102

Query: 123 ---DSWEFIRQAI 132
              D+++ + Q +
Sbjct: 103 EWFDTFDLVHQRL 115


>gi|149177324|ref|ZP_01855929.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
           8797]
 gi|148843849|gb|EDL58207.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
           8797]
          Length = 189

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVK 113
           Q+ Q     VD  +  G  ++    + G +    +V AIDI           ++ +    
Sbjct: 14  QVFQPGETAVDATAGNGHDTRFLCELAGKSG---KVFAIDIQQQALDQTAVMLQELEYHN 70

Query: 114 F--FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
           F     D       E I     G    V+ ++ Y   G   +   ++ +L   A   A E
Sbjct: 71  FELICGD--HRLISELIPTQYQGRIGAVMFNLGYLPGGDHNLITQQSSTLT--ALNAAKE 126

Query: 172 MLNIGGDFLVKTFQG 186
            L  GG   +  + G
Sbjct: 127 FLRPGGIMTILAYPG 141


>gi|86610094|ref|YP_478856.1| hypothetical protein CYB_2667 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558636|gb|ABD03593.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 234

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 21/121 (17%)

Query: 65  LQSNRRIVDLGSSPGS-WSQVAARITGSNANNTRVVAIDIL----DMEPILGVKFFKFDF 119
           L    R++DLG+ PG    Q A R  G +     V+   +     D++ I G++  + D 
Sbjct: 49  LPPAPRLLDLGTGPGFALGQWAQRYPGGHFIGVDVMPYMLERAAADLKGIPGIQLLQADL 108

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            D                +VL +M  P    +++                L +L  GG F
Sbjct: 109 HDPHLPLAANSIDAAQAVVVLHEMVQPLRLLQEV----------------LRLLKPGGRF 152

Query: 180 L 180
           L
Sbjct: 153 L 153


>gi|294635104|ref|ZP_06713615.1| putative RNA 2'-O-ribose methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291091481|gb|EFE24042.1| putative RNA 2'-O-ribose methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 372

 Score = 42.2 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S  R VDLG+ PG W+    R       +  V 
Sbjct: 184 APSRSTLKLEEALHIFIPRDEWDERLASGMRAVDLGACPGGWTYQLVRR------SMMVQ 237

Query: 100 AIDILDMEP 108
           AID   M P
Sbjct: 238 AIDNGPMAP 246


>gi|149376360|ref|ZP_01894123.1| predicted methyltransferase [Marinobacter algicola DG893]
 gi|149359374|gb|EDM47835.1| predicted methyltransferase [Marinobacter algicola DG893]
          Length = 358

 Score = 42.2 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +  +           L S ++ VDLG++PG W+    R          V 
Sbjct: 187 APSRSALKLEEAWKVFLPPGQELDYLGSGKQAVDLGAAPGGWTWQLVR------QGMMVT 240

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 241 AVDNGPMNP 249


>gi|311265698|ref|XP_003130779.1| PREDICTED: putative methyltransferase NSUN6-like [Sus scrofa]
          Length = 472

 Score = 42.2 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 20/135 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--VAIDILDME--------------PI 109
           Q   RI+DL ++PG  +   A           +  +A  +  ++                
Sbjct: 233 QPGERILDLCAAPGGKTTHIAARMRDQGEVIALDKIANKVEKIKQNALLLGLNSIRAFCF 292

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA--YPTIGHRKIDHLRTMS-LCEAA 165
            G K  K D        F+ ++      D   S M           +  + +   L    
Sbjct: 293 DGTKALKLDIDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWTLKEVTSYQPLQRKL 352

Query: 166 TFFALEMLNIGGDFL 180
              A+E+L  GG  +
Sbjct: 353 FTVAVELLKPGGVLV 367


>gi|255084273|ref|XP_002508711.1| predicted protein [Micromonas sp. RCC299]
 gi|226523988|gb|ACO69969.1| predicted protein [Micromonas sp. RCC299]
          Length = 602

 Score = 41.8 bits (97), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 11/130 (8%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSP 78
           R+   S R WL     +   +R    G   R+ +K+ +   +  + ++   R VD+G++P
Sbjct: 311 RTGPDSLRAWLM-DAGEAARKRRTDAGAMCRAFHKIEEATARAGVAIERTWRCVDVGAAP 369

Query: 79  GSWSQV-AARITGSNANNTRVVA----IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G W+Q   AR+  +       V      D  +      V   K      D+ E +R+A  
Sbjct: 370 GGWTQWLCARLDAACGGEVFAVDPAELGDFKNGRLPPNVTHLKM--RGEDAVETVRRA-- 425

Query: 134 GNPDLVLSDM 143
           G+ DL++ D 
Sbjct: 426 GDVDLLVCDA 435


>gi|256425069|ref|YP_003125722.1| arsenite S-adenosylmethyltransferase [Chitinophaga pinensis DSM
           2588]
 gi|256039977|gb|ACU63521.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 279

 Score = 41.8 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 32/130 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPI 109
           +   +++   ++DLGS  G+   +A         + +V+ ID                  
Sbjct: 69  QFARIKTGDTVIDLGSGAGNDCFIAR---HETGESGKVIGIDFTPAMIERARINAATRGY 125

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V+F + D   +     I        D+V+S+     +  +           E      
Sbjct: 126 NNVEFRQGDIEKMPVTADI-------ADVVVSNCVLNLVPDK-----------ENVFKEI 167

Query: 170 LEMLNIGGDF 179
             +L  GG F
Sbjct: 168 FRVLKPGGHF 177


>gi|301166198|emb|CBW25773.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 339

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 47  WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
             +R+  K+++  E   + + +   ++DLG+ PG W+ +A +   S      V+AID  +
Sbjct: 180 APSRAFKKIVEAQEIMGKKISAGETLIDLGACPGGWTYIARKNGAS------VIAIDRSE 233

Query: 106 MEP----ILGVKFFKFDFLDLDSWEFI 128
           +         V F + D       E +
Sbjct: 234 LREDLMLDPEVTFLQTDAFKYRPEETL 260


>gi|159040978|ref|YP_001540230.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157919813|gb|ABW01240.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167]
          Length = 398

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 29/156 (18%)

Query: 54  KLLQINE-KHQIL----------------QSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
           KL  ++E +  +                   N  I+DL S+PG  +   A+++G+ A   
Sbjct: 180 KLRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIII 239

Query: 97  RVVA-----IDILDMEPILGVKFFKFD----FLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            V         I      LGV+   +     FL L+  EFI +A     D   SD     
Sbjct: 240 AVDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGVRP 299

Query: 148 IGHRKIDHLRTMSLCEAA---TFFALEMLNIGGDFL 180
             + ++     ++L          A  +L   G  +
Sbjct: 300 KLYYRLTMTDLINLVAYQRQFIKVAYSLLKPNGSLI 335


>gi|154253151|ref|YP_001413975.1| type 11 methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157101|gb|ABS64318.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1]
          Length = 219

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           LQ+   +VD+G+  GS     A +        R++ ID       +     +   +++D 
Sbjct: 42  LQTGETVVDIGAGTGS----QAILLKQAVPGIRIIGIDPDPDVLAIARAKAEAAAVEVD- 96

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
               RQ  G   D +        +    + H   M +       A  +L  GG  ++  F
Sbjct: 97  ---WRQGFGDEADQIAGSEIADAVVSSLVLHQCPMEVKSGILAAANRVLKPGGRLVIADF 153

Query: 185 QGGTTNDILCLLKKHFQKVIHV 206
               T     L++  F++V  V
Sbjct: 154 GLQRT----FLMRTLFRQVQAV 171


>gi|91793913|ref|YP_563564.1| putative RNA 2'-O-ribose methyltransferase [Shewanella
           denitrificans OS217]
 gi|123165924|sp|Q12L35|RLMM_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|91715915|gb|ABE55841.1| conserved hypothetical protein [Shewanella denitrificans OS217]
          Length = 367

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 46/171 (26%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+    +S  + VDLG+ PG W+    R          V 
Sbjct: 185 APSRSSLKLDEAFGAFLTKEEQEMRCRSGLKAVDLGACPGGWTYQLVRR------GMMVA 238

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           A+D   M+  L     VK ++ D    +        +       + DM        ++  
Sbjct: 239 AVDNGPMDEKLMETGQVKHYRADGFRFEPPRKNIYWL-------VCDMVEKPSRVAELME 291

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
              +                 G F    F      ++   +K  +++V  +
Sbjct: 292 AWAI----------------NGWFKEAIF------NLKLPMKSRYKEVRVI 320


>gi|253508837|gb|ACT31738.1| polyprotein [St. Louis encephalitis virus]
          Length = 3429

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2564 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2621

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2622 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2673

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT          A E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2674 NPSC-EVEEARTA----RVLDMAEEWLKKGAIEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2727

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2728 GLVRV--PL-SRNSTHEMYWV 2745


>gi|163839564|ref|YP_001623969.1| hemolysin A [Renibacterium salmoninarum ATCC 33209]
 gi|162953040|gb|ABY22555.1| hemolysin A [Renibacterium salmoninarum ATCC 33209]
          Length = 281

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 47  WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL- 104
           + +R+A+KL     +  QI  + +R +D G+S G ++QV    +G+       V  D L 
Sbjct: 59  YVSRAAHKLRGALAEFPQIDPNGKRCLDAGASTGGFTQVLLE-SGATEVVAVDVGHDQLV 117

Query: 105 -DMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
            ++     V+ F+  +  DLD+ +     IGG   L ++D+++             +SL 
Sbjct: 118 SEIRDDPRVRVFEGLNVRDLDAAD-----IGGPAALTVADLSF-------------ISLT 159

Query: 163 EAATFFALEMLNIGGDFLVKT 183
                 A   L  GGD L+  
Sbjct: 160 LVVGPLAQATLA-GGDLLLMV 179


>gi|116196574|ref|XP_001224099.1| hypothetical protein CHGG_04885 [Chaetomium globosum CBS 148.51]
 gi|88180798|gb|EAQ88266.1| hypothetical protein CHGG_04885 [Chaetomium globosum CBS 148.51]
          Length = 333

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 25/117 (21%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           ++I+DLG+  G W+        S     RV  +D+  ++P      V F   D  D    
Sbjct: 100 QKIIDLGTGFGEWAIEVGEKFPS----ARVTGVDLSPIQPHWIPPNVDFIVDDIEDQWVH 155

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
                    +   V S                 +     A    LE L  GG   +K
Sbjct: 156 A--NDFDFAHFRFVHS----------------IIRASRTALRNVLENLKPGGWVEIK 194


>gi|73948934|ref|XP_855665.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 isoform
           2 [Canis familiaris]
          Length = 328

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 22/137 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--VAIDILDMEP------ILGVKFFKF 117
           Q   +I+DL ++PG  +   A +         +  ++  +  ++       +  +K F F
Sbjct: 92  QPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIKQNALLLGLNSIKAFCF 151

Query: 118 DFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS-LCE 163
           D      ++ + +A G  P           D   S M           +  + +   L  
Sbjct: 152 DGTKALKFDMVEKAEGNPPFLPESFDRILLDAPCSGMGQRPNMACSWTLKEVTSYQPLQR 211

Query: 164 AATFFALEMLNIGGDFL 180
                A+++L  GG  +
Sbjct: 212 KLFTVAVQLLKPGGVLV 228


>gi|57040455|ref|XP_544240.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 isoform
           1 [Canis familiaris]
          Length = 469

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 22/137 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--VAIDILDMEP------ILGVKFFKF 117
           Q   +I+DL ++PG  +   A +         +  ++  +  ++       +  +K F F
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIKQNALLLGLNSIKAFCF 292

Query: 118 DFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS-LCE 163
           D      ++ + +A G  P           D   S M           +  + +   L  
Sbjct: 293 DGTKALKFDMVEKAEGNPPFLPESFDRILLDAPCSGMGQRPNMACSWTLKEVTSYQPLQR 352

Query: 164 AATFFALEMLNIGGDFL 180
                A+++L  GG  +
Sbjct: 353 KLFTVAVQLLKPGGVLV 369


>gi|269138077|ref|YP_003294777.1| hypothetical protein ETAE_0721 [Edwardsiella tarda EIB202]
 gi|267983737|gb|ACY83566.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304558121|gb|ADM40785.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Edwardsiella tarda
           FL6-60]
          Length = 369

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S  R VDLG+ PG W+    +       +  V 
Sbjct: 179 APSRSTLKLEEAFHVFIPADEWDERLGSGMRAVDLGACPGGWTYQLVQR------SMMVQ 232

Query: 100 AIDILDMEP 108
           AID   M P
Sbjct: 233 AIDNGPMAP 241


>gi|56459970|ref|YP_155251.1| putative RNA 2'-O-ribose methyltransferase [Idiomarina loihiensis
           L2TR]
 gi|81362578|sp|Q5QW15|RLMM_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|56178980|gb|AAV81702.1| SAM-dependent methyltransferase [Idiomarina loihiensis L2TR]
          Length = 369

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 29/146 (19%)

Query: 40  QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
           + ++     +RS  KL +        NE  + + S  + VDLG++PG W+    R     
Sbjct: 189 RMSKE--APSRSTLKLDEAFQVFVPENEHEKRVHSGMKAVDLGAAPGGWTYQLVRR---- 242

Query: 93  ANNTRVVAIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
                V A+D   M   L     VK  + D             +       + DM     
Sbjct: 243 --GMMVQAVDNGPMAESLMETGQVKHIQEDGFKFRPKRKNVTWL-------VCDMVEKP- 292

Query: 149 GHRKIDHLRTMSLCEAATFFALEMLN 174
              ++  L T  L E     A+  L 
Sbjct: 293 --ARVGELMTSWLLEGDCEEAIFNLK 316


>gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
 gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
          Length = 380

 Score = 41.8 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 53  YKLLQINEK---HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---- 105
           + L Q + +     +++   R++DL    G +S   A          +VV +DI      
Sbjct: 193 FYLDQRDNREYVRNLVKEGDRVLDLFCYSGGFSVYCANR------GAKVVGVDINKRAVE 246

Query: 106 -MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
                  +   K DF+  ++++FI+++     DL+++D   P I   K +    +     
Sbjct: 247 LARENAKLNSVKADFVLGNAFDFIQES-KEEWDLIIAD--PPAIAKTKKEKESILWAIWK 303

Query: 165 ATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             +++ + L  GG  F+       ++ +++  ++     V   
Sbjct: 304 LAYYSFQKLKKGGSLFICSCTYQISSEEMIRQVRLASTDVKRR 346


>gi|119178221|ref|XP_001240804.1| hypothetical protein CIMG_07967 [Coccidioides immitis RS]
          Length = 372

 Score = 41.8 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 35/184 (19%)

Query: 70  RIVDLGSSPGSWSQVA--------------------ARITGSNANNTRVVAIDILDMEPI 109
           RI+D+  +PG +   A                     +I    + N RV   DI      
Sbjct: 119 RILDMCMAPGGFLAEALSVNSGSRALGFTLPLCKGGHKILLPRSLNFRVKYQDITMFAAD 178

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKID--HLRTMSLCEAA 165
           +GV     +    D+  F+ + +      DLV+ D        R           L    
Sbjct: 179 MGVTDIPKE--HPDAANFLPRQLDPREVFDLVICDGQVLRTHDRAAYREEREARRLTLTQ 236

Query: 166 TFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV---ASRAESVEMFL 220
               +E +  GG  +      +   T  +L    K F  V   KP    A R+     ++
Sbjct: 237 LALGVEHVRHGGTIVALLHKIEAWDTVSLLYTFSK-FSSVQVFKPQKFHAKRSSF---YM 292

Query: 221 LAKG 224
           +A  
Sbjct: 293 VATN 296


>gi|303310239|ref|XP_003065132.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240104792|gb|EER22987.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 386

 Score = 41.8 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 35/184 (19%)

Query: 70  RIVDLGSSPGSWSQVA--------------------ARITGSNANNTRVVAIDILDMEPI 109
           RI+D+  +PG +   A                     +I      N RV   DI      
Sbjct: 133 RILDMCMAPGGFLAEALSVNSGSRALGFTLPLCKGGHKILLPRNLNFRVKYQDITMFAAD 192

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMS--LCEAA 165
           +GV     +    D+  F+ + +      DLV+ D        R        +  L    
Sbjct: 193 MGVTDIPKE--HPDAPNFLPRQLDPREVFDLVICDGQVLRTHDRAAYREAREARRLTLTQ 250

Query: 166 TFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV---ASRAESVEMFL 220
               +E +  GG  +      +   T  +L    K F  V   KP    A R+     ++
Sbjct: 251 LALGVEHVRHGGTIVALLHKIEAWDTVSLLYTFSK-FSSVQVFKPQKFHAKRSSF---YM 306

Query: 221 LAKG 224
           +A  
Sbjct: 307 VATN 310


>gi|242221039|ref|XP_002476276.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724479|gb|EED78518.1| predicted protein [Postia placenta Mad-698-R]
          Length = 417

 Score = 41.8 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 25/177 (14%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK--------FDFLD 121
           R +DLG SPG +S    +           +  +       +   F           D +D
Sbjct: 129 RFLDLGCSPGGFSSWLLKNNPGVEGVGITLPDERSQFPLQIDPAFLTIGKYQVRYADIID 188

Query: 122 -------LDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
                    +   I    G   P  ++   A+PT+        RT  L  A  F  +   
Sbjct: 189 IVSVSPGDGALPIIESKHGLRQPYDLVIAGAFPTMQDSTPWGYRT-QLLVAQIFLIIANT 247

Query: 174 NIGGD--FLVKTFQGGTTNDILCLLKKHFQKVIHVKP---VASRAESVEMFLLAKGF 225
             GG    L+KT       DI+ LL++ F  +   K     A R+     +L+ +GF
Sbjct: 248 APGGSAIVLIKTIPVLLHLDIIGLLRQAFDSISAHKAGKLHAVRSS---CYLVCRGF 301


>gi|124505747|ref|XP_001350987.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|23510630|emb|CAD49015.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1224

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIH 205
           I    I   R   LC +    +L M+NIGG F++K         +    +L   F+KV  
Sbjct: 316 IIEESIHIERI--LCISQLVCSLGMINIGGCFIMKIKLSFDNFLLSIFSILSICFKKVDV 373

Query: 206 VKPVASRAESVEMFLLAKGF 225
            +P     ++V +FL+   F
Sbjct: 374 YRPSCCYLQNV-IFLIGIHF 392



 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
           +   A   L   G+ +++     T     ++ +L   F K+    P +    S+++FL  
Sbjct: 934 SLIIAYNFLKKNGNMIIRLSSVLTFFTAGLIYILFCSFDKIEFFVPPSCDDISLDIFLYC 993

Query: 223 KGF 225
             F
Sbjct: 994 HNF 996


>gi|320033979|gb|EFW15925.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 375

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 35/184 (19%)

Query: 70  RIVDLGSSPGSWSQVA--------------------ARITGSNANNTRVVAIDILDMEPI 109
           RI+D+  +PG +   A                     +I      N RV   DI      
Sbjct: 122 RILDMCMAPGGFLAEALSVNSGSRALGFTLPLCKGGHKILLPRNLNFRVKYQDITMFAAD 181

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMS--LCEAA 165
           +GV     +    D+  F+ + +      DLV+ D        R        +  L    
Sbjct: 182 MGVTDIPKE--HPDAPNFLPRQLDPREVFDLVICDGQVLRTHDRAAYREAREARRLTLTQ 239

Query: 166 TFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPV---ASRAESVEMFL 220
               +E +  GG  +      +   T  +L    K F  V   KP    A R+     ++
Sbjct: 240 LALGVEHVRHGGTIVALLHKIEAWDTVSLLYTFSK-FSSVQVFKPQKFHAKRSSF---YM 295

Query: 221 LAKG 224
           +A  
Sbjct: 296 VATN 299


>gi|303244795|ref|ZP_07331124.1| Methyltransferase type 12 [Methanothermococcus okinawensis IH1]
 gi|302484836|gb|EFL47771.1| Methyltransferase type 12 [Methanothermococcus okinawensis IH1]
          Length = 358

 Score = 41.8 bits (97), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 20/158 (12%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           I  ++  L++   I+D+G    S     ++I          ++ ++L +  I   ++   
Sbjct: 185 IAAEYLGLENGDYILDVGCGSRSPEFYISKIFPKGRYTGIDISKNLLKIAEIRTKRWDNG 244

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             L L   +F    I    D V+       +   K                 ++ L  GG
Sbjct: 245 SVL-LKHMDFHDAIIKNKYDYVICTYMLKYVSSPKTF-----------LKKMMDALRSGG 292

Query: 178 DFLVKTFQGGTTN--------DILCLLKKHFQKVIHVK 207
              +       T         +    L K F+     K
Sbjct: 293 KLFIAVEFFKDTVSDINVELFEFYNRLNKFFKNYHSKK 330


>gi|192362124|ref|YP_001982612.1| cyclopropane fatty acyl phospholipid synthase [Cellvibrio japonicus
           Ueda107]
 gi|190688289|gb|ACE85967.1| cyclopropane-fatty-acyl-phospholipid synthase [Cellvibrio japonicus
           Ueda107]
          Length = 400

 Score = 41.8 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 36/188 (19%)

Query: 16  KVKNRSCQGSSRDWL--NRHIN----------DPYVQRAQLEGW--------RARSAYKL 55
           K    + Q   R W     H +          DPY   A   G+         A+ A KL
Sbjct: 112 KATLFNRQSQDRAWQVGKEHYDLGNDLFEKMLDPY--MAYSCGYWEQASSLEAAQQA-KL 168

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
             I  K Q+     +I+D+G   GS+ + AA   G       +        + + G    
Sbjct: 169 ELICRKLQLT-PGMKILDIGCGWGSFMRYAAEHYGVECIGLTISHEQAEYGKKLAGSLPI 227

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           +F+  D   +  +     G  D ++S   +  +GH+                 A   L  
Sbjct: 228 QFELTD---YRQMTPGHYGRFDRIVSVGMFEHVGHKNYRQYFQ---------VARHCLKD 275

Query: 176 GGDFLVKT 183
            G FL+ T
Sbjct: 276 DGLFLLHT 283


>gi|56477992|ref|YP_159581.1| putative RNA 2'-O-ribose methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|81357102|sp|Q5P1Y4|RLMM_AZOSE RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|56314035|emb|CAI08680.1| predicted SAM-dependent methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 368

 Score = 41.8 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 13/67 (19%)

Query: 49  ARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           +RS  KL +         E++  L++  R VDLG++PG W+   A          RV A+
Sbjct: 197 SRSTLKLAEAIFTLLSETERNASLRAGLRAVDLGAAPGGWTWQLAHR------GLRVTAV 250

Query: 102 DILDMEP 108
           D   M P
Sbjct: 251 DNGPMAP 257


>gi|313146137|ref|ZP_07808330.1| arsenite S-adenosylmethyltransferase [Bacteroides fragilis 3_1_12]
 gi|313134904|gb|EFR52264.1| arsenite S-adenosylmethyltransferase [Bacteroides fragilis 3_1_12]
          Length = 283

 Score = 41.8 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 32/132 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL---------- 110
           ++  +     +VDLGS  G+   +A         + +V+ ID                  
Sbjct: 82  QYANISEGDTVVDLGSGAGNDCFIAR---AEVGESGKVIGIDFSPQMITKARNNALKRGY 138

Query: 111 -GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V+F + D             +    D+V+S+     +  + I                
Sbjct: 139 VNVEFLEGDI-------ENMPLLDNTADVVVSNCVLNLLPEKNIIFKEIY---------- 181

Query: 170 LEMLNIGGDFLV 181
             +L  GG F +
Sbjct: 182 -RVLKPGGHFCI 192


>gi|255008414|ref|ZP_05280540.1| arsenite S-adenosylmethyltransferase [Bacteroides fragilis 3_1_12]
          Length = 276

 Score = 41.8 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 32/132 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL---------- 110
           ++  +     +VDLGS  G+   +A         + +V+ ID                  
Sbjct: 75  QYANISEGDTVVDLGSGAGNDCFIAR---AEVGESGKVIGIDFSPQMITKARNNALKRGY 131

Query: 111 -GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V+F + D             +    D+V+S+     +  + I                
Sbjct: 132 VNVEFLEGDI-------ENMPLLDNTADVVVSNCVLNLLPEKNIIFKEIY---------- 174

Query: 170 LEMLNIGGDFLV 181
             +L  GG F +
Sbjct: 175 -RVLKPGGHFCI 185


>gi|308806163|ref|XP_003080393.1| Predicted 23S rRNA methylase containing THUMP domain (ISS)
           [Ostreococcus tauri]
 gi|116058853|emb|CAL54560.1| Predicted 23S rRNA methylase containing THUMP domain (ISS)
           [Ostreococcus tauri]
          Length = 424

 Score = 41.8 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 49  ARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-- 105
            R+ +KL +   +  + ++ +    D+G++PG W+    R  G    +  V AID  +  
Sbjct: 245 CRAYFKLHEALLRAGVPVKDDWNCADIGAAPGGWT----RTLGERVTSGVVWAIDPAELV 300

Query: 106 MEPIL-GVKFFKFDFLD--LDSWEFIRQAIGGNPDLVLSDM-AYPTIGHRKIDHLRT--- 158
           ++P+   VK  +    D      E +R    G  +L++ D   +P    R          
Sbjct: 301 LDPMPVNVKHLQVLAEDAVQTVREGLRATKTGELNLIVCDANMHPEACARIALEFAAKFA 360

Query: 159 -----MSLCEAATFFALEMLN 174
                  L  +   F    L 
Sbjct: 361 SSKGESWLILSTKNFCKGTLK 381


>gi|288818047|ref|YP_003432394.1| hemolysin [Hydrogenobacter thermophilus TK-6]
 gi|288787446|dbj|BAI69193.1| hemolysin [Hydrogenobacter thermophilus TK-6]
 gi|308751648|gb|ADO45131.1| hemolysin A [Hydrogenobacter thermophilus TK-6]
          Length = 261

 Score = 41.8 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 58/199 (29%), Gaps = 41/199 (20%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R  YKL    E   I       +D+GSS G ++    +         +V A+D    
Sbjct: 59  YVSRGGYKLEHALEGFGIDVRGFVALDVGSSTGGFTDCLLQR-----GVIKVYAVD---- 109

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
                V   + D         I         L  S +         +D            
Sbjct: 110 -----VGRAQMDIKLRQDPRVILYEETDARSLTESHV-PEKADIITVDVSFIS--VTKVL 161

Query: 167 FFALEMLNIGGDFLV--------------KTFQGGTTNDILCLLKKH-------FQK--V 203
              ++ L  GG  LV              K     + +    +LK         FQ   V
Sbjct: 162 PHVVKFLKEGGILLVLVKPQFELTPDKVKKGIVRSSEDKFQAVLKVCQKLKDLGFQIGGV 221

Query: 204 IHVKPVASRAESVEMFLLA 222
           +  KP  S   + E FLLA
Sbjct: 222 LKAKPRGS-KGNEEFFLLA 239


>gi|219130601|ref|XP_002185450.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403164|gb|EEC43119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 504

 Score = 41.8 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVAIDILDMEPILGVKFFKFD 118
              ++VDLG+SPG W+ V  R+  S     R V+A ++++     GV F + D
Sbjct: 324 PGSQVVDLGASPGGWTAVLRRLGCSVTAVDRTVLASNLMN---DDGVTFVQGD 373


>gi|121594695|ref|YP_986591.1| type 11 methyltransferase [Acidovorax sp. JS42]
 gi|120606775|gb|ABM42515.1| Methyltransferase type 11 [Acidovorax sp. JS42]
          Length = 231

 Score = 41.8 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 57  QINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
           +++   ++L     R+++LG      ++   +                        V   
Sbjct: 9   ELDVLVELLPTPGTRVIELGCGGARMARQMLQRWPDMRCLGL-------------EVDLR 55

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           +      D+   +R A+GG   +   D  +      K  H   +   + A      +L  
Sbjct: 56  QHAINLQDTPPRMRFAVGGAQAIACDDAQFDLALMLKSLHHVPLDAMDQALTEVARVLRP 115

Query: 176 GGDFLV 181
           GG   V
Sbjct: 116 GGHLYV 121


>gi|330503908|ref|YP_004380777.1| putative RNA 2'-O-ribose methyltransferase [Pseudomonas mendocina
           NK-01]
 gi|328918194|gb|AEB59025.1| putative RNA 2'-O-ribose methyltransferase [Pseudomonas mendocina
           NK-01]
          Length = 351

 Score = 41.8 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 35/117 (29%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         +  Q L      VDLG++PG W+              RV 
Sbjct: 179 APSRSTLKLEEAWHHFIPREQWDQRLAPGMTAVDLGAAPGGWTWQLVNR------EIRVT 232

Query: 100 AIDILDM--------------------EPILGVKFFKFDFLDL--DSWEFIRQAIGG 134
           A+D   M                     P   V +   D ++    +   I   +G 
Sbjct: 233 AVDNGPMAESLMYSGFVVHQRADGFTFRPRHPVHWMVCDIVEKPARTAAMIETWLGE 289


>gi|170727803|ref|YP_001761829.1| putative RNA 2'-O-ribose methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|226705375|sp|B1KQX8|RLMM_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|169813150|gb|ACA87734.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
          Length = 358

 Score = 41.8 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 46/171 (26%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         E+ Q L S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSTLKLDEAFIHFIPEEEQEQRLSSGMNAVDLGACPGGWTYQLVRR------GMFVA 236

Query: 100 AIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH 155
           A+D   M+        VK ++ D    +        +       + DM        ++  
Sbjct: 237 AVDNGPMDEGLMETGQVKHYQADGFRFEPPRKNIYWL-------VCDMIEKPSRVAELIE 289

Query: 156 LRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
              +                 G F    F      ++   +K  +Q V  +
Sbjct: 290 AWAI----------------NGWFKEAMF------NLKLPMKSRYQDVSTI 318


>gi|237730009|ref|ZP_04560490.1| cyclopropane-fatty-acyl-phospholipid synthase [Citrobacter sp.
           30_2]
 gi|226908615|gb|EEH94533.1| cyclopropane-fatty-acyl-phospholipid synthase [Citrobacter sp.
           30_2]
          Length = 384

 Score = 41.8 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 70/201 (34%), Gaps = 44/201 (21%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWL--NRHI---NDPYVQRAQLEG------WR----- 48
           PG+          +  + Q  SR W+    H    ND +              W+     
Sbjct: 91  PGNLKDILRIASARLFNLQSRSRAWIVGKEHYDIGNDLFALMLDPHMQYSCGYWKDATTL 150

Query: 49  --ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
             A++A KL  I EK Q L+   R++D+G   G  ++ AAR  G  A     ++ +   M
Sbjct: 151 DDAQNA-KLKMICEKLQ-LKPGMRLLDIGCGWGGLAEYAARHYGV-AVEGVTISKEQQKM 207

Query: 107 EPIL----GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    V     D+ DLD           + D ++S   +  +G +  D   +    
Sbjct: 208 AQQRCEGLDVNILLQDYRDLD----------KHYDRIVSVGMFEHVGPKNYDTYFS---- 253

Query: 163 EAATFFALEMLNIGGDFLVKT 183
                 A   L   G FL+ T
Sbjct: 254 -----IADRCLKPDGLFLLHT 269


>gi|146306933|ref|YP_001187398.1| putative RNA 2'-O-ribose methyltransferase [Pseudomonas mendocina
           ymp]
 gi|166199444|sp|A4XTK0|RLMM_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|145575134|gb|ABP84666.1| SAM-dependent methyltransferase-like protein [Pseudomonas mendocina
           ymp]
          Length = 351

 Score = 41.8 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 35/117 (29%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         +  Q L      VDLG++PG W+              RV 
Sbjct: 179 APSRSTLKLEEAWHHFIPREQWDQRLAPGMTAVDLGAAPGGWTWQLVNR------EIRVT 232

Query: 100 AIDILDM--------------------EPILGVKFFKFDFLDL--DSWEFIRQAIGG 134
           A+D   M                     P   V +   D ++    +   I   +G 
Sbjct: 233 AVDNGPMAESLMYSGFVVHQRADGFTFRPRHPVHWMVCDIVEKPARTAAMIETWLGE 289


>gi|14211780|gb|AAK57512.1|AF378008_1 core-spike protein lambda-2 [Mammalian orthoreovirus 3]
 gi|14211782|gb|AAK57513.1|AF378009_1 core-spike protein lambda-2 [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 41.8 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWTQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +   + GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K      T       K        + +KP  +   +VE+F +A G
Sbjct: 614 MKINFPTRTVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|81964111|sp|Q91RA6|LMBD2_REOVL RecName: Full=Outer capsid protein lambda-2; Short=Lambda2;
           AltName: Full=Lambda2(Cap); Includes: RecName: Full=mRNA
           guanylyltransferase; Includes: RecName: Full=mRNA
           (guanine-N(7)-)-methyltransferase
 gi|14211770|gb|AAK57507.1|AF378003_1 core-spike protein lambda-2 [Mammalian orthoreovirus 1]
          Length = 1289

 Score = 41.8 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWTQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +   + GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K      T       K        + +KP  +   +VE+F +A G
Sbjct: 614 MKINFPTRTVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|15669443|ref|NP_248253.1| hypothetical protein MJ_1257 [Methanocaldococcus jannaschii DSM
           2661]
 gi|37999507|sp|Q58654|Y1257_METJA RecName: Full=Uncharacterized protein MJ1257
 gi|1591891|gb|AAB99268.1| hypothetical protein MJ_1257 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 349

 Score = 41.4 bits (96), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 50  RSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSW----SQVAARITGSNANNTRVVAIDIL 104
           RS  K+ ++ EK     ++   +VD+GSSPG W    S+ A ++   +    ++ A +I+
Sbjct: 188 RSERKMQELMEKFPFIFENINCVVDIGSSPGGWAKMLSKKAKKVYAIDTGELKIKANNII 247

Query: 105 DMEPILGVKFFKFDFLDL 122
            ++       F+ D  + 
Sbjct: 248 HIKKRAENVDFEKDINEE 265


>gi|304269160|dbj|BAJ15036.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|213656654|dbj|BAG84573.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|211905178|gb|ACJ11212.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|211905168|gb|ACJ11203.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|166080350|gb|ABY81904.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|166080341|gb|ABY81896.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|50812720|gb|AAT81472.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|50404170|gb|AAT76834.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|46254667|gb|AAS86266.1| large protein [Mumps virus]
 gi|55775562|gb|AAV65064.1| L [Mumps virus strain L-Zagreb]
 gi|55775572|gb|AAV65073.1| L [Mumps virus strain L-Zagreb]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|14325895|gb|AAK60064.1| L [Mumps virus]
 gi|14325915|gb|AAK60082.1| L [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|18643333|gb|AAL76268.1|AF467767_7 L protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|14325925|gb|AAK60091.1| L [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|14325905|gb|AAK60073.1| L [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|14325935|gb|AAK60100.1| L [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|14211776|gb|AAK57510.1|AF378006_1 core-spike protein lambda-2 [Mammalian orthoreovirus 2]
          Length = 1289

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +   + GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K              K        + +KP  +   +VE+F +A G
Sbjct: 614 MKINFPTRAVWYYIERKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|11545415|gb|AAG37833.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|320036448|gb|EFW18387.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 333

 Score = 41.4 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 24/122 (19%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           +R++D+G+  G+W    A        +  V+  D+   +P      VKF   D  +    
Sbjct: 94  QRVLDIGTGSGAW----AIRFADEYPSAEVIGNDLSPTQPADIPPNVKFLVDDVEE---- 145

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
               +   G+         Y     R + HL            A   L  GG   V+ F 
Sbjct: 146 ----EWEYGSRPFDFIHSRYMVFAIRDMKHLIQQ---------AFNALRPGGWLEVQDFD 192

Query: 186 GG 187
             
Sbjct: 193 SR 194


>gi|225734224|pdb|3GCZ|A Chain A, Yokose Virus Methyltransferase In Complex With Adomet
          Length = 282

 Score = 41.4 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 17/179 (9%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R + KL  + E+   ++    +VDLG   G WS  AA +          + +   +   
Sbjct: 73  SRGSAKLRWMEER-GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI 131

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
           +     +        +  F  + I G+   +L D+   +     ++  RT          
Sbjct: 132 MRTTLGWNLIRFKDKTDVFNMEVIPGD--TLLCDIG-ESSPSIAVEEQRT----LRVLNC 184

Query: 169 ALEMLNIGGD--FLVKTFQGGTTNDILCLLKKHFQKVIH----VKPVASRAESVEMFLL 221
           A + L  G    F +K      T  I+  L +   ++ H    V+   SR  + EM+ +
Sbjct: 185 AKQWLQEGNYTEFCIKVL-CPYTPLIMEELSRL--QLKHGGGLVRVPLSRNSTHEMYWV 240


>gi|255326173|ref|ZP_05367259.1| ribosomal RNA large subunit methyltransferase J [Rothia
           mucilaginosa ATCC 25296]
 gi|255296627|gb|EET75958.1| ribosomal RNA large subunit methyltransferase J [Rothia
           mucilaginosa ATCC 25296]
          Length = 242

 Score = 41.4 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 24/150 (16%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNT 96
           YV++++L  + +R+ +KL    +    ++   +R +D G+S G ++ V  R   ++    
Sbjct: 49  YVRQSELTEYVSRAGHKLAGALDAFPEIEVEGKRCLDAGASTGGFTDVLLRRGAAHVAAV 108

Query: 97  RV---VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            V     +D L  EP +GV      +  L+      + IGG  +L +SD++         
Sbjct: 109 DVGHGQLVDTLREEPRVGV------YEGLNVRYMKPEDIGGQVELTVSDLS--------- 153

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               +++L   A   A E    GGD ++  
Sbjct: 154 --FISLTLVMEALANATE---TGGDLVLMV 178


>gi|303313255|ref|XP_003066639.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106301|gb|EER24494.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 333

 Score = 41.4 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 24/122 (19%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           +R++D+G+  G+W    A        +  V+  D+   +P      VKF        D  
Sbjct: 94  QRVLDIGTGSGAW----AIRFADEYPSAEVIGNDLSPTQPADIPPNVKFLV-----DDVE 144

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E      GG P        Y     R + HL            A   L  GG   V+ F 
Sbjct: 145 EEWEY--GGRP-FDFIHSRYMVFAIRDMKHLIQQ---------AFNALRPGGWLEVQDFD 192

Query: 186 GG 187
             
Sbjct: 193 SR 194


>gi|149182974|ref|ZP_01861430.1| alcohol dehydrogenase, glutathione-dependent formaldehyde
           dehydrogenase [Bacillus sp. SG-1]
 gi|148849311|gb|EDL63505.1| alcohol dehydrogenase, glutathione-dependent formaldehyde
           dehydrogenase [Bacillus sp. SG-1]
          Length = 377

 Score = 41.4 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 14/155 (9%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVKFF 115
           +H  ++    ++ LG  P     + A+         RV+A+D L       +    V+ F
Sbjct: 171 EHSGMKPGDTVIVLGCGPIG---LMAQKFAWMKGAGRVIAVDNLPYRLNKAKQNNNVEIF 227

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL---CEAATFFALEM 172
            FD    +  + +++  GG  D+V+  +             + + L     +A   A + 
Sbjct: 228 NFDEF-KEMGQHLKEVTGGGADIVIDCVGMDGEKSAVEKVEQKLKLQGGTLSAINIAKDA 286

Query: 173 LNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           +   G   +    G   N     L   F++ + +K
Sbjct: 287 VRKFGTVQLTGVYGMMYNMF--PLGNFFERNVTLK 319


>gi|325678525|ref|ZP_08158137.1| methyltransferase domain protein [Ruminococcus albus 8]
 gi|324109780|gb|EGC03984.1| methyltransferase domain protein [Ruminococcus albus 8]
          Length = 196

 Score = 41.4 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           K+  L      +D+G   G+ +   A+         R+V ID    E     +    +  
Sbjct: 22  KYVTLPEGGIGLDVGCGSGALTIACAKRNPQ----GRMVGIDRWGKEYASFSRQLCENNS 77

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D +S +      G    L   D  +  +    + H  T    +      L +L  GG F 
Sbjct: 78  DAESVQNTEFHQGDACKLDYPDEYFDAVTSNYVYHNITGVNKQELLRETLRVLKKGGTFA 137

Query: 181 VKTFQG----GTTNDILCLL 196
           +         G     +  L
Sbjct: 138 IHDIMSKARYGDMQKFVNEL 157


>gi|307110004|gb|EFN58241.1| hypothetical protein CHLNCDRAFT_142152 [Chlorella variabilis]
          Length = 486

 Score = 41.4 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            ++A KL +      +  ++   VDLG++PG W+ V A+          V+A+D   M+ 
Sbjct: 294 CKAAGKLSEALTAAGLQLTSGVAVDLGAAPGGWTHVLAQR------ARLVLAVDPAPMDE 347

Query: 109 ---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
              + GV        +    + +        DL++SD+         +       L   A
Sbjct: 348 RALVPGVVTHLACKAEAAVQQIVGMVGEAGVDLIVSDVNRHPSQIVDMLRPLLPLLHPGA 407

Query: 166 TFFALEMLNIGGDFLVKTFQGGTT---NDILCLLKKHFQKVI 204
                  L     F  +  QG T      +   L   F++V 
Sbjct: 408 AVIMT--LK----FFGRG-QGRTEEWRQKLAEQLAPEFERVQ 442


>gi|114320646|ref|YP_742329.1| putative RNA 2'-O-ribose methyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311682|sp|Q0A8J8|RLMM_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|114227040|gb|ABI56839.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 360

 Score = 41.4 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 47  WRARSAYKLLQIN-------EKHQILQSNRRIVDLGSSPGSWSQVAAR 87
             +RSA KL +         E+   L+     VDLG++PG W+ V  +
Sbjct: 188 APSRSALKLEEAVGWLLTPVEREAALRPGMSAVDLGAAPGGWTWVLRQ 235


>gi|254821088|ref|ZP_05226089.1| TlyA [Mycobacterium intracellulare ATCC 13950]
          Length = 269

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
             GW +R A+KL+   +   I  + RR +D G+S G +++V      +      V     
Sbjct: 59  ERGWVSRGAHKLIGALDAFGISVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQL 118

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +      +  +   +AIGG  DLV++D++
Sbjct: 119 AWSLRSDARVVVVE----RTNVRDLTPEAIGGPADLVVADLS 156


>gi|183982514|ref|YP_001850805.1| cytotoxin/hemolysin, TlyA [Mycobacterium marinum M]
 gi|183175840|gb|ACC40950.1| cytotoxin/hemolysin, TlyA [Mycobacterium marinum M]
          Length = 281

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
             GW +R A+KL+   +   I    RR +D G+S G ++ V      +      V     
Sbjct: 59  ERGWVSRGAHKLIGALDAFGIDVHGRRCLDAGASTGGFTDVLLDRGAAEVVAADVGYGQL 118

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +      +  +    AIGG  DLV++D++
Sbjct: 119 AWSLRTDPRVIVIE----RTNVRDLSPAAIGGQVDLVVADLS 156


>gi|121719410|ref|XP_001276404.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119404602|gb|EAW14978.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 319

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 24/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           L++ ++++DLG+  G W    A           V+  DI  ++P      V+F   DF  
Sbjct: 82  LKNPQKVLDLGTGTGIW----AIDFADEFPGAVVIGNDISPIQPGWLPPNVEFIIDDF-- 135

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
               +++ +      D + S      +        R           A + L  GG F +
Sbjct: 136 --ERDWLEK--ENTYDFIHSRNLAGCVADWP-QLYRQ----------AYDHLKPGGYFEL 180

Query: 182 K 182
           K
Sbjct: 181 K 181


>gi|219944307|gb|ACL54956.1| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 19/195 (9%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++ +K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIKKFQ-WEPKGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF--IRQAIGGNPDLVLSDMAYPTIG 149
            N+     +     +  P+     F+    +L   +      A+       +      +  
Sbjct: 2560 NSVTGLTLGGANRE-NPLP----FQTKGHNLAVLKAGVDVYALEPRDCNTIVCDIGESDP 2614

Query: 150  HRKIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHV 206
              +++  RT            + L  N G  F  K         +    + +H      V
Sbjct: 2615 RPEVEKTRT----LKVLTMLEKWLVHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHNGKLV 2670

Query: 207  KPVASRAESVEMFLL 221
            +   SR  + EM+ +
Sbjct: 2671 RLSLSRNSTAEMYYV 2685


>gi|309951280|emb|CBH20130.1| large protein [Eel virus European X]
          Length = 2075

 Score = 41.4 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 26/156 (16%)

Query: 75   GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
            GS+PG  S +AA    S     R  A                 D     +WE+ +  +  
Sbjct: 1687 GSAPGPPSAIAAMGNMSMRCVNRDSAWKN------------PSDLSHTSTWEYFQSLMTQ 1734

Query: 135  N---PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ---GGT 188
            +    +L   DM   +         + ++         L +L   G  + KT+       
Sbjct: 1735 HQLRCNLWTFDMEVRSHDISDAIEEQIVAN--------LHLLPKNGTIIYKTYLTKLSDM 1786

Query: 189  TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
               IL  L   F++V  V   A+ + S E++ L + 
Sbjct: 1787 ETTILDRLGGFFKRVSLVSTDATSSHSSEVYALFQN 1822


>gi|114706809|ref|ZP_01439709.1| hemolysin-like protein [Fulvimarina pelagi HTCC2506]
 gi|114537757|gb|EAU40881.1| hemolysin-like protein [Fulvimarina pelagi HTCC2506]
          Length = 266

 Score = 41.4 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           G+ +R+A KL+   +   I  +    +D+G+S G +SQV  +   ++     V A+D+  
Sbjct: 75  GYVSRAALKLIAGLDAFAIEPAGLDCLDIGASTGGFSQVLLQRGAAH-----VTAVDV-- 127

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
                G         +      I    G N   + +D     + +  +  +  +SL   A
Sbjct: 128 -----GHDQMHESLRNKPRLTAIE---GLNARDLTADDLNGHMPNLLVVDVSFISLTL-A 178

Query: 166 TFFALEMLNIG--GDFLVK 182
              ALE+   G  G FLVK
Sbjct: 179 LPPALELAESGALGLFLVK 197


>gi|14211784|gb|AAK57514.1|AF378010_1 core-spike protein lambda-2 [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 41.4 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 556 RGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLSSCMHATAPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           VK      T       K        + +KP  +   +VE+F +A G
Sbjct: 614 VKVNFPTRTVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|119952255|ref|YP_950477.1| polyprotein [Entebbe bat virus]
 gi|54399532|gb|AAV34153.1| polyprotein [Entebbe bat virus]
 gi|112818955|gb|ABI23561.1| polyprotein [Entebbe bat virus]
          Length = 3411

 Score = 41.4 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 20/170 (11%)

Query: 60   EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---MEPILGVKFFK 116
            E+   ++    +VDLG   G WS  AA +          +     +   M    G    +
Sbjct: 2571 EERGFVKLAGTVVDLGCGRGGWSYYAASLKAVKKVLAFTLGTQGHEKPLMRTTYGWNIIR 2630

Query: 117  F-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
            F D +D+ + E I       P   L      +    +++  RT          A + L+ 
Sbjct: 2631 FKDRVDVFTLETI-------PGDTLLCDIGESSPSIQVEEQRT----LKVLMNAKKWLSE 2679

Query: 176  G--GDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            G   +F +K          + +  L++ F   +   P+ SR  + EM+ +
Sbjct: 2680 GRYENFCIKVLCPYTPLVMEEMARLQRVFGGGLVRVPL-SRNSTHEMYWV 2728


>gi|332993690|gb|AEF03745.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Alteromonas sp. SN2]
          Length = 364

 Score = 41.4 bits (96), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 48  RARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVV 99
            +RS  KL          NE+ ++L++  R VDLG+ PG W+ Q+  R     A +   +
Sbjct: 193 PSRSTLKLEDALVNMLSANEQREVLRAGGRAVDLGACPGGWTYQLVKREMYVEAIDNGAI 252

Query: 100 AI 101
           A 
Sbjct: 253 AD 254


>gi|83645093|ref|YP_433528.1| putative RNA 2'-O-ribose methyltransferase [Hahella chejuensis KCTC
           2396]
 gi|123533670|sp|Q2SJS1|RLMM_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|83633136|gb|ABC29103.1| predicted SAM-dependent methyltransferase [Hahella chejuensis KCTC
           2396]
          Length = 389

 Score = 41.4 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 23/109 (21%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQV--------------A 85
             +RSA K+ +         E+  +L+  +R VDLG++PG W+                A
Sbjct: 210 APSRSALKIEEAFLTMLTPAEREFVLKRGQRGVDLGAAPGGWTWYMVTQGVKMTAVDHGA 269

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD--LDSWEFIRQAI 132
            +           V+ D    +P   V +   D +D    + E +   +
Sbjct: 270 LQQELLEDPAVTYVSDDGYVYKPQRKVDWVVCDIVDKPKRTMERMADWL 318


>gi|33112011|ref|NP_872627.1| polyprotein [Yokose virus]
 gi|32879785|dbj|BAC79364.1| polyprotein [Yokose virus]
          Length = 3425

 Score = 41.4 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 17/179 (9%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R + KL  + E+   ++    +VDLG   G WS  AA +          + +   +   
Sbjct: 2575 SRGSAKLRWMEER-GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI 2633

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            +     +        +  F  + I G+   +L D+   +     ++  RT          
Sbjct: 2634 MRTTLGWNLIRFKDKTDVFNMEVIPGD--TLLCDIG-ESSPSIAVEEQRT----LKVLNC 2686

Query: 169  ALEMLNIGGD--FLVKTFQGGTTNDILCLLKKHFQKVIH----VKPVASRAESVEMFLL 221
            A + L  G    F +K      T  I+  L +   ++ H    V+   SR  + EM+ +
Sbjct: 2687 AKQWLQEGNYTEFCIKVL-CPYTPLIMEELSRL--QLKHGGGLVRVPLSRNSTHEMYWV 2742


>gi|312371839|gb|EFR19925.1| hypothetical protein AND_21582 [Anopheles darlingi]
          Length = 353

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 20/141 (14%)

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFK 116
           +    I +  +  VDLG+  G  +              R+ AID+    +  I G     
Sbjct: 84  DRIFDIKRQFQNAVDLGAGRGYVTNHVL-----GETVQRLTAIDLSPTMLAQIKGTPGL- 137

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            DF   +  E        + DLV+S M+   +          +  C  A   +   L   
Sbjct: 138 -DFTVQEMDEERFAFEENSLDLVVSSMSMHWVND--------LPACFRAVNRS---LKPD 185

Query: 177 GDFLVKTFQGGTTNDILCLLK 197
           G F+   F G T  ++   L+
Sbjct: 186 GVFIGAMFGGETLYELRSALQ 206


>gi|85712013|ref|ZP_01043067.1| SAM-dependent methyltransferase [Idiomarina baltica OS145]
 gi|85694199|gb|EAQ32143.1| SAM-dependent methyltransferase [Idiomarina baltica OS145]
          Length = 358

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 13/66 (19%)

Query: 48  RARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
            +RS  KL +         E+ Q +Q+  R VDLG++PG W+    R          V A
Sbjct: 187 PSRSTLKLDEAFHVFVPEEEREQRIQAGMRAVDLGAAPGGWTYQLVRR------GMMVQA 240

Query: 101 IDILDM 106
           +D   M
Sbjct: 241 VDNGPM 246


>gi|157827026|ref|YP_001496090.1| hemolysin A [Rickettsia bellii OSU 85-389]
 gi|157802330|gb|ABV79053.1| Hemolysin A [Rickettsia bellii OSU 85-389]
          Length = 249

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
            D  V+  +   + +R A KL++  +  +I  S    +DLGSS G +++V          
Sbjct: 50  TDIKVKLPK-HNYVSRGALKLIKALDHFKINPSGMVCIDLGSSTGGFTEVLLEQGAE--- 105

Query: 95  NTRVVAIDI 103
              V A+DI
Sbjct: 106 --LVFAVDI 112


>gi|42528338|gb|AAS18435.1| nonstructural protein [Cloning vector pBR-XJ160]
          Length = 2485

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKSYNLAFGFPPQARYDMVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|3978526|gb|AAC83378.1| nonstructural polyprotein [Sindbis virus]
          Length = 2487

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKSYNLAFGFPPQARYDMVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|261822614|ref|YP_003260720.1| RNA 2'-O-ribose methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261606627|gb|ACX89113.1| putative RNA 2'-O-ribose methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 366

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLGSGMYAVDLGACPGGWTYQLVKR------SMMVY 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|253687325|ref|YP_003016515.1| putative RNA 2'-O-ribose methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259494576|sp|C6DAH1|RLMM_PECCP RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|251753903|gb|ACT11979.1| putative RNA 2'-O-ribose methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 366

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLGSGMYAVDLGACPGGWTYQLVKR------SMMVY 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS]
 gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS]
          Length = 428

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 27/174 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PILGVKFF-- 115
           +    + D+ ++PG  S   A +     N  R++A+D    +          LG+     
Sbjct: 249 EPGSTVFDMCAAPGGKSTFMAELME---NRGRIIALDRTPAKVARIASNASALGITIIEP 305

Query: 116 -KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC---EAATFFALE 171
            + D L  D    +   +   P      +        +    +   L     A    A  
Sbjct: 306 REGDALTFDPGCAMDTILLDAPCTGTGVLGRRAELRWRTTPEKLRELAALQAAMLDRAAS 365

Query: 172 MLNIGGDFLVKTFQGG-TTNDILCL--LKKHFQKVIHVKPVASR---AESVEMF 219
           +L  GG  L  T       N++     LK+H + +      ASR     S E F
Sbjct: 366 LLRPGGVLLYATCSVEPEENELQTEAFLKRHPEFIA----EASRLTLPGSHEGF 415


>gi|50119957|ref|YP_049124.1| putative RNA 2'-O-ribose methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81645953|sp|Q6D8F7|RLMM_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|49610483|emb|CAG73928.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 366

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFVPADEWDERLGSGMYAVDLGACPGGWTYQLVKR------SMMVY 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327]
 gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327]
          Length = 428

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 20/155 (12%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL---GVKFFKFDFLDL 122
           Q    +VDL ++PG  S   A +     N  R++A+D    +        +      ++ 
Sbjct: 249 QPGSTVVDLCAAPGGKSTFMAELM---QNRGRIIALDRTPAKVERLASNAQALGITIIEP 305

Query: 123 DSWEFIRQAIGGNPDLVLSD--------MAYPTIGHRKIDHLRTMSLCE---AATFFALE 171
              + +   + G  D VL D        +        +    +   L E   A    A  
Sbjct: 306 REGDALTFELEGAVDTVLLDAPCTGTGVLGRRAELRWRTTPEKLWELVELQAAMLDHAAS 365

Query: 172 MLNIGGDFLVKTFQ---GGTTNDILCLLKKHFQKV 203
           +L  GG  +  T               LK+H + V
Sbjct: 366 LLPAGGVLVYATCSVEPEENEQQAEAFLKRHPEFV 400


>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 450

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 22/162 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PILGVKFFKF 117
           Q    ++D+ ++PG  S   A   G       V A DI   +                + 
Sbjct: 256 QKGDYVIDMCAAPGGKSLHVADKMGDYGT---VDARDISQYKVDMIEENIHRTDCINVQA 312

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR--------TMSLCEAATFFA 169
             +D   ++   +         +    Y  IG +     R         + L       A
Sbjct: 313 HVMDATVFDVDSELKADVVLADVPCSGYGVIGKKPEIKYRVTAQKQEEIVILQRTILDNA 372

Query: 170 LEMLNIGGDFL---VKTFQGGTTNDILCLLKKHFQKVIHVKP 208
            E +  GG  +       +     ++L  +  H  K+  + P
Sbjct: 373 AEYVKPGGVLVFSTCTIAKEENEENMLWFMNNHPFKLESIDP 414


>gi|238918761|ref|YP_002932275.1| RNA 2'-O-ribose methyltransferase [Edwardsiella ictaluri 93-146]
 gi|259494575|sp|C5BHA4|RLMM_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|238868329|gb|ACR68040.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 374

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S  R VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLGSGMRAVDLGACPGGWTYQLVQR------SMMVQ 237

Query: 100 AIDILDMEP 108
           AID   M P
Sbjct: 238 AIDNGPMVP 246


>gi|14211772|gb|AAK57508.1|AF378004_1 core-spike protein lambda-2 [Mammalian orthoreovirus 1]
          Length = 1289

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 556 RGAVVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLFSSCMHATAPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           VK      T       K        + +KP  +   +VE+F +A G
Sbjct: 614 VKINFPTRTVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|327188063|gb|EGE55290.1| hemolysin A [Rhizobium etli CNPAF512]
          Length = 261

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL    E  ++  +    +D+G+S G +++V  +     A +   + +   
Sbjct: 74  QDYVSRAALKLASALEHFRLDPAGHHCLDIGASTGGFTEVLLQR---GAAHVTAIDVGHG 130

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
            M P +       +   L++ +   + IG     ++SD++             ++ L  A
Sbjct: 131 QMHPRISGDPRVTNREALNARDLTAEDIGRPASFIVSDVS-----------FISLKLALA 179

Query: 165 -ATFFA 169
            A   A
Sbjct: 180 PALDIA 185


>gi|281208249|gb|EFA82427.1| hypothetical protein PPL_04852 [Polysphondylium pallidum PN500]
          Length = 727

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 47  WRARSAYKLLQINEKH----QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
             +RS  KL ++  +     + L + +  VDLGSSPG WS            N RV++ID
Sbjct: 530 LPSRSYLKLFEMTLRFPDFMRQLHTGQLAVDLGSSPGGWSFFCLER------NMRVISID 583

Query: 103 ILDM 106
             ++
Sbjct: 584 KSNI 587


>gi|270156633|ref|ZP_06185290.1| methyltransferase-like protein [Legionella longbeachae D-4968]
 gi|289164915|ref|YP_003455053.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269988658|gb|EEZ94912.1| methyltransferase-like protein [Legionella longbeachae D-4968]
 gi|288858088|emb|CBJ11950.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 304

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 48  RARSAYKLLQ---INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
             R+  KL +   + EK+   +S  + +DLG+SPG W+          +    V A+D  
Sbjct: 148 PNRAYLKLWEALTLLEKYP--KSGDKALDLGASPGGWT------YVMQSLGAHVTAVDKA 199

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            ++P +  +    ++L   ++      +  N D VLSD+A
Sbjct: 200 PLDPKI-AQLPHINYLQQSAFAIDPMQLDQNYDWVLSDVA 238


>gi|218462484|ref|ZP_03502575.1| hemolysin A [Rhizobium etli Kim 5]
          Length = 261

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           + + +R+A KL    +  ++  +    +D+G+S G +++V  +   ++     V      
Sbjct: 74  QDYVSRAALKLASALDHFRLDPAGHHCLDIGASTGGFTEVLLQRGAAHVTAIDVGHGQMH 133

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
             +     V   +     L++     + IG     ++SD++             ++ L  
Sbjct: 134 PRISGDPRVTNREG----LNARNLTAEDIGHPASFIVSDVS-----------FISLKLAL 178

Query: 164 A-ATFFA 169
           A A   A
Sbjct: 179 APALDIA 185


>gi|153007893|ref|YP_001369108.1| hemolysin A [Ochrobactrum anthropi ATCC 49188]
 gi|151559781|gb|ABS13279.1| hemolysin A [Ochrobactrum anthropi ATCC 49188]
          Length = 253

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD- 105
           + +R+A KL+   +  ++    R  +D+G+S G ++QV     G++      V  D L  
Sbjct: 66  YVSRAALKLIAALDHFELDVKGRTALDIGASTGGFTQVLLER-GASHVLAIDVGHDQLHE 124

Query: 106 -MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            +     V   +   L+  + E +    G   D V+SD++
Sbjct: 125 TLRADPRVTNKEG--LNARALE-LSHLDGREIDCVVSDVS 161


>gi|126173605|ref|YP_001049754.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS155]
 gi|217974151|ref|YP_002358902.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS223]
 gi|166199448|sp|A3D2C2|RLMM_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|254809567|sp|B8EAT7|RLMM_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|125996810|gb|ABN60885.1| conserved hypothetical protein [Shewanella baltica OS155]
 gi|217499286|gb|ACK47479.1| conserved hypothetical protein [Shewanella baltica OS223]
          Length = 361

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGQFVPKEEQEERIRSGMNSVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDEKLMETGQVKHYREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A       +L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVTAILETMQTILKENG 330


>gi|25121507|ref|NP_740671.1| nsp2 nonstructural protein [Sindbis virus]
          Length = 807

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
           + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 671 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 726

Query: 176 GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 727 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCV-SSNTEMYLI---FRQ 776


>gi|9790317|ref|NP_062888.1| hypothetical protein [Sindbis virus]
 gi|334102|gb|AAA96974.1| p270 nonstructural polyprotein (readthrough) [Sindbis virus]
          Length = 2513

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCV-SSNTEMYLI---FRQ 1316


>gi|9790318|ref|NP_062889.1| hypothetical protein [Sindbis virus]
 gi|334101|gb|AAA96975.1| p230 nonstructural polyprotein [Sindbis virus]
          Length = 1896

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCV-SSNTEMYLI---FRQ 1316


>gi|130549|sp|P03317|POLN_SINDV RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=P123'; Contains: RecName:
            Full=mRNA-capping enzyme nsP1; AltName:
            Full=Non-structural protein 1; Contains: RecName:
            Full=Protease nsP2; AltName: Full=Non-structural protein
            2; Short=nsP2; Contains: RecName: Full=Non-structural
            protein 3; Short=nsP3; Contains: RecName:
            Full=Non-structural protein 3'; Short=nsP3'; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
          Length = 2512

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCV-SSNTEMYLI---FRQ 1316


>gi|227114673|ref|ZP_03828329.1| putative RNA 2'-O-ribose methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227326522|ref|ZP_03830546.1| putative RNA 2'-O-ribose methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 366

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLGSGMYAVDLGACPGGWTYQLVKR------SMMVY 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|94986770|ref|YP_594703.1| SAM-dependent methyltransferase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731019|emb|CAJ54382.1| predicted SAM-dependent methyltransferase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 308

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 17/102 (16%)

Query: 48  RARSAYKLLQINEKHQILQSNRR-IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD- 105
            +R+  KL ++  +   + S +   +DLG+SPG W+ V A++  S      V++ID    
Sbjct: 148 PSRAYLKLWEVFTRFSFVPSYKELCIDLGASPGGWTWVLAKLGSS------VISIDKAPL 201

Query: 106 ---MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +  +  V+ +                  GN D + SDMA
Sbjct: 202 ASHISSLPNVEHYTGSGFRFTPLHI------GNVDWIFSDMA 237


>gi|327352554|gb|EGE81411.1| TAM domain methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 343

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 10/134 (7%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFL 120
           I ++  R++DLG+  GSW+             ++V+ +DI  ++ I       F   DF 
Sbjct: 85  IKRNPGRVLDLGTGTGSWAVE----FADQHQKSQVIGMDISPIQRIHIPPNCTFEIDDFE 140

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---ALEMLNIGG 177
               +    +A     +   S           I                  A   L  GG
Sbjct: 141 AEWPYTASAKADTPPLEQTASADNPAHSPFDFIHMREIAGSVHDYPKLFGQAYRHLAPGG 200

Query: 178 DFLVKTFQGGTTND 191
              V+  +    +D
Sbjct: 201 FLEVQGMETKFFSD 214


>gi|308187960|ref|YP_003932091.1| RNA 2'-O-ribose methyltransferase mtfA [Pantoea vagans C9-1]
 gi|308058470|gb|ADO10642.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Pantoea vagans
           C9-1]
          Length = 366

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 38/164 (23%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMYAVDLGACPGGWTYQLVQR------SMMVY 237

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           A+D   M P L         +   +  F  +    N   ++ DM    +           
Sbjct: 238 AVDNGPMAPSL---MDTGQVMHEKADGFKFRPPRTNISWLVCDMVEKPV----------- 283

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
                      + L   G      F      ++   +KK +++V
Sbjct: 284 ----RVANLMTDWLV-NGWCREAIF------NLKLPMKKRYEEV 316


>gi|304409476|ref|ZP_07391096.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS183]
 gi|307303834|ref|ZP_07583587.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           BA175]
 gi|304351994|gb|EFM16392.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS183]
 gi|306912732|gb|EFN43155.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           BA175]
          Length = 361

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGQFVPKEEQEERIRSGMNSVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDEKLMETGQVKHYREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A       +L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVTAILETMQTILKENG 330


>gi|295400402|ref|ZP_06810381.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977677|gb|EFG53276.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 463

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLD 121
               ++DL ++PG       ++     N   +VA +I       +   +         + 
Sbjct: 109 PGETVLDLCAAPGG---KTTQLAAMMKNQGLIVANEIHPKRVKALSENIERFGITNALVT 165

Query: 122 LDSWEFIRQAIGGNPDLVLSDM-----AYPTIGHRKIDHLRTMSLCEAA------TFFAL 170
            ++ E + +   G  D +L D               +       + + A         A 
Sbjct: 166 NETPEKLAKYFPGFFDKILVDAPCSGEGMFRKDEEAVRFWSQAHVEQCASKQRHILDCAY 225

Query: 171 EMLNIGGDFL--VKTFQGGTTNDILCLLKKHF--------QKVIHVKP 208
            ML  GG  +    TF       ++    + +        +KV  ++P
Sbjct: 226 SMLKEGGVLVYSTCTFSPEENEQMIEAFLQTYDDLELLSIEKVHGIQP 273


>gi|312111072|ref|YP_003989388.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1]
 gi|311216173|gb|ADP74777.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1]
          Length = 463

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 29/168 (17%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLD 121
               ++DL ++PG       ++     N   +VA +I       +   +         + 
Sbjct: 109 PGETVLDLCAAPGG---KTTQLAAMMKNQGLIVANEIHPKRVKALSENIERFGITNALVT 165

Query: 122 LDSWEFIRQAIGGNPDLVLSDM-----AYPTIGHRKIDHLRTMSLCEAA------TFFAL 170
            ++ E + +   G  D +L D               +       + + A         A 
Sbjct: 166 NETPEKLAKYFPGFFDKILVDAPCSGEGMFRKDEEAVRFWSQAHVEQCASKQRHILDCAY 225

Query: 171 EMLNIGGDFL--VKTFQGGTTNDILCLLKKHF--------QKVIHVKP 208
            ML  GG  +    TF       ++    + +        +KV  ++P
Sbjct: 226 SMLKEGGVLVYSTCTFSPEENEQMIEAFLQTYDDLELLSIEKVHGIQP 273


>gi|221048102|gb|ACL98160.1| L [Mumps virus]
          Length = 2261

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSINSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|197941304|gb|ACH78356.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSINSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|152999885|ref|YP_001365566.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS185]
 gi|160874510|ref|YP_001553826.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS195]
 gi|166199449|sp|A6WL14|RLMM_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|189040353|sp|A9KTM5|RLMM_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|151364503|gb|ABS07503.1| conserved hypothetical protein [Shewanella baltica OS185]
 gi|160860032|gb|ABX48566.1| conserved hypothetical protein [Shewanella baltica OS195]
 gi|315266748|gb|ADT93601.1| putative RNA 2'-O-ribose methyltransferase [Shewanella baltica
           OS678]
          Length = 361

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS+ KL +         E+ + ++S    VDLG+ PG W+    R          V 
Sbjct: 183 APSRSSLKLDEAFGQFVPKEEQEERIRSGMNSVDLGACPGGWTYQLVRR------GMFVS 236

Query: 100 AIDILDMEPILG----VKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHR 151
           A+D   M+  L     VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDEKLMETGQVKHYREDGFRFEPQRKNIYWLVCDMVEKPARVAELIEAWAINGW 296

Query: 152 KIDHLRTMSL--------CEAATFFALEMLNIGG 177
             + +  + L          A       +L   G
Sbjct: 297 FKEAIFNLKLPMKSRYKEVTAILETMQTILKENG 330


>gi|109649538|gb|ABG36717.1| large protein [Mumps virus]
          Length = 2261

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSINSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L + F  +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFFSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|247893527|gb|ACT09359.1| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIRKFQ-WEPKGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            N+     +     +       K      L          A+       +      +    
Sbjct: 2560 NSVTGLTLGGANRENPLPFKTKGHNLAVLKAGVD---VYALEPRDCNTIVCDIGESDPRP 2616

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKP 208
            +++  RT            + L  N G  F  K         +    + +H      V+ 
Sbjct: 2617 EVEKTRT----LKVLTMLEKWLVHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHNGKLVRL 2672

Query: 209  VASRAESVEMFLL 221
              SR  + EM+ +
Sbjct: 2673 SLSRNSTAEMYYV 2685


>gi|166197627|dbj|BAG06229.1| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIRKFQ-WEPKGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            N+     +     +       K      L          A+       +      +    
Sbjct: 2560 NSVTGLTLGGANRENPLPFKTKGHNLAVLKAGVD---VYALEPRDCNTIVCDIGESDPRP 2616

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKP 208
            +++  RT            + L  N G  F  K         +    + +H      V+ 
Sbjct: 2617 EVEKTRT----LKVLTMLEKWLVHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHNGKLVRL 2672

Query: 209  VASRAESVEMFLL 221
              SR  + EM+ +
Sbjct: 2673 SLSRNSTAEMYYV 2685


>gi|325181914|emb|CCA16368.1| Predicted 23S rRNA methylase containing THUMP domain (ISS) putative
           [Albugo laibachii Nc14]
          Length = 389

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 41/186 (22%)

Query: 48  RARSAYKLLQ-INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
             R+ YKL + ++  H  + ++ R++D+G++PG W++              V A+D  ++
Sbjct: 169 PCRAYYKLQECLDIVH--VNADDRVLDIGAAPGGWTRCLYER------GACVTAVDPGEL 220

Query: 107 E---PILGVKFFKFDFLDLDSWEFIRQAIGGNPDL----VLSDMAYPTIGHRKIDHLRTM 159
                   ++  +   L  D+   + +    +  +    V    +   +         + 
Sbjct: 221 NIQVQPPRIQHLQM--LLEDALPQLSKMQKFDVCVCDINVRVHQSASLMLKVASLLAPSA 278

Query: 160 SLCEA--------------ATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQKVI 204
            L                 A   A  +L+     F  K  Q  T N+     +  F +  
Sbjct: 279 FLVLTLKLGKKPNENAVQEAISIAERILSEHYHAFETKWLQANTRNE-----RTLFAR-- 331

Query: 205 HVKPVA 210
             KP A
Sbjct: 332 -RKPPA 336


>gi|167771168|ref|ZP_02443221.1| hypothetical protein ANACOL_02526 [Anaerotruncus colihominis DSM
           17241]
 gi|167666587|gb|EDS10717.1| hypothetical protein ANACOL_02526 [Anaerotruncus colihominis DSM
           17241]
          Length = 236

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 28/145 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+     +D+G+  G ++   A    +    +RV+ +D                  +   
Sbjct: 11  LRPGM-ALDVGTRYGEFAFTLAEAMPAG---SRVIGLDCD----------------EKTV 50

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT------MSLCEAATFFALEMLNIGGD 178
            E   +  G     VL D A+        +          +    A       +L  GG 
Sbjct: 51  EEAKEKNAGKGVGFVLGDGAHMDFSDNTFELAAISNTLHHIENYNAVLDEMFRVLRPGGV 110

Query: 179 FLV--KTFQGGTTNDILCLLKKHFQ 201
           FLV      G         L+  F+
Sbjct: 111 FLVNEMFSDGQNEAQQTHFLQHCFE 135


>gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           pseudintermedius ED99]
          Length = 433

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 22/166 (13%)

Query: 55  LLQINEK-------HQILQSNRRIVDLGSSPGSWSQVAARITGSNAN--NTRVVAIDILD 105
           L+ I +K       +  LQ    ++D  S+PG  +   A I         T V A  I  
Sbjct: 228 LISIQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHMAEILNDQGTVLATDVHAHKIQL 287

Query: 106 ME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           ++       + G++  + D       +F +  +   P   L  + +       I      
Sbjct: 288 IDHNIRKLHLTGIRAMQHDATQPYDQQFDKVLLDA-PCSGLGVLRHKPEIKYVITPQDVK 346

Query: 160 SLCEAATFFALEM---LNIGGDFL---VKTFQGGTTNDILCLLKKH 199
            L +        +   L  GG  +       Q    N I   LK H
Sbjct: 347 GLVDLQLRIIDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSH 392


>gi|26553603|ref|NP_757537.1| hemolysin [Mycoplasma penetrans HF-2]
 gi|26453609|dbj|BAC43941.1| hemolysin [Mycoplasma penetrans HF-2]
          Length = 246

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E + +R+AYKL    E   I  +N+  +D+GSS G ++QV         N  +V +ID+
Sbjct: 56  EEKYVSRAAYKLKAAIEHFNIDLNNKIAIDIGSSTGGFTQVLLE-----NNVKKVYSIDV 110


>gi|304399246|ref|ZP_07381113.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pantoea sp. aB]
 gi|304353300|gb|EFM17680.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pantoea sp. aB]
          Length = 366

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 38/164 (23%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMYAVDLGACPGGWTYQLVQR------SMMVY 237

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
           A+D   M P L         +   +  F  +    N   ++ DM    +           
Sbjct: 238 AVDNGPMAPSL---MDTGQVMHEKADGFKFRPPRTNISWLVCDMVEKPV----------- 283

Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
                      + L   G      F      ++   +KK +++V
Sbjct: 284 ----RVANLMTDWLV-NGWCREAIF------NLKLPMKKRYEEV 316


>gi|3873296|gb|AAC77465.1| p270 nonstructural polyprotein [Sindbis-like virus YN87448]
          Length = 2517

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|3873295|gb|AAC77464.1| nonstructural protein [Sindbis-like virus YN87448]
          Length = 1900

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|1125067|gb|AAA86133.1| nonstructural polyprotein [Sindbis-like virus]
          Length = 1901

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|1125070|gb|AAA86135.1| nonstructural polyprotein [Sindbis-like virus]
          Length = 2500

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|334112|gb|AAA96972.1| nonstructural polyprotein [Ockelbo virus]
          Length = 2515

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|130548|sp|P27283|POLN_SINDO RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=P123'; Contains: RecName:
            Full=mRNA-capping enzyme nsP1; AltName:
            Full=Non-structural protein 1; Contains: RecName:
            Full=Protease nsP2; AltName: Full=Non-structural protein
            2; Short=nsP2; Contains: RecName: Full=Non-structural
            protein 3; Short=nsP3; Contains: RecName:
            Full=Non-structural protein 3'; Short=nsP3'; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
          Length = 2514

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 124  SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEMLNI 175
            + +    A G  P      +        +  H +           L  +A       LN 
Sbjct: 1211 ADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNC----LNP 1266

Query: 176  GGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            GG  +VK   +    + D++  L + F +V   +P    + + EM+L+   FR+
Sbjct: 1267 GGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECV-SSNTEMYLI---FRQ 1316


>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 461

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 26/157 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PILGVKFFKF 117
           +   R++D+  +PG  +   A++  +      ++  D+   +          LG+   + 
Sbjct: 262 KPGERVLDVCCAPGGKTTHLAQLMNNQGT---IIGNDLYPAKLSLVNELVERLGIGIIQT 318

Query: 118 DFLDLDSWEFIRQAIG----GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---AL 170
              D    E I           P   L  +        +        L E        A 
Sbjct: 319 QAGDAGILEGIEGRFDKVLVDAPCSGLGVIRRRADLRWQKSEQEIKELSEIQKKILLRAA 378

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           + +  GG+ +  T       +        F+ V   +
Sbjct: 379 DFVAPGGEMVYSTCTIEPEEN--------FEVVKVFR 407


>gi|124481954|gb|ABN11828.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPQIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|118462925|ref|YP_882261.1| hemolysin A [Mycobacterium avium 104]
 gi|118164212|gb|ABK65109.1| hemolysin A [Mycobacterium avium 104]
          Length = 269

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
             GW +R A+KLL   +  +I  + RR +D G+S G +++V      +      V     
Sbjct: 59  ERGWVSRGAHKLLGALDAFEIAVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQL 118

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +      +  +   +AIGG  DLV++D++
Sbjct: 119 AWSLRSDARVVVVE----RTNVRDLTPEAIGGPADLVVADLS 156


>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
 gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
          Length = 451

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 18/129 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID---ILDMEPILGVKFFKFDFLDL 122
           Q    ++D+ ++PG  S   A + G   +  +V+A D       +     +  +   +  
Sbjct: 257 QPGETVLDVCAAPGGKSTHLAELMG---DRGQVIACDSSAKRLRKVQENAQRLQLSSITT 313

Query: 123 DSWEFIRQAIGGNPDLVLSDM-------AYPTIGHRKIDHLRT----MSLCEAATFFALE 171
            + +  RQ  G   D +L D         +     R      +      L       A  
Sbjct: 314 RAID-GRQIKGIQADRILVDAPCSGLGTLHRHADGRWRQSPDSVAELAQLQSEILDAAAA 372

Query: 172 MLNIGGDFL 180
            L   G  +
Sbjct: 373 CLKPAGTLV 381


>gi|41407499|ref|NP_960335.1| TlyA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254775529|ref|ZP_05217045.1| TlyA [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395852|gb|AAS03718.1| TlyA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 269

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
             GW +R A+KLL   +  +I  + RR +D G+S G +++V      +      V     
Sbjct: 59  ERGWVSRGAHKLLGALDAFEIAVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQL 118

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +      +  +   +AIGG  DLV++D++
Sbjct: 119 AWSLRSDARVVVVE----RTNVRDLTPEAIGGPADLVVADLS 156


>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
 gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
          Length = 405

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 18/129 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID---ILDMEPILGVKFFKFDFLDL 122
           Q    ++D+ ++PG  S   A + G   +  +V+A D       +     +  +   +  
Sbjct: 211 QPGETVLDVCAAPGGKSTHLAELMG---DRGQVIACDSSAKRLRKVQENAQRLQLSSITT 267

Query: 123 DSWEFIRQAIGGNPDLVLSDM-------AYPTIGHRKIDHLRT----MSLCEAATFFALE 171
            + +  RQ  G   D +L D         +     R      +      L       A  
Sbjct: 268 RAID-GRQIKGIQADRILVDAPCSGLGILHRHADGRWRQSPDSVAELAQLQSEILDAAAA 326

Query: 172 MLNIGGDFL 180
            L   G  +
Sbjct: 327 CLKPAGTLV 335


>gi|320592460|gb|EFX04890.1| sterol 24-c-methyltransferase [Grosmannia clavigera kw1407]
          Length = 379

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 34/160 (21%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           Y   A+ E + A S    + I E         R++D+G   G  ++  A+ TG+     +
Sbjct: 110 YQAIARHEHYLAHS----IGIQE-------GMRVLDVGCGVGGPAREIAKFTGA-----K 153

Query: 98  VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
           V+ ++  + +            ++  +    ++ +      V  D    +      D + 
Sbjct: 154 VIGLNNNNYQ------------IERATHYAAKEKLSDQVAFVKGDFMQMSFPDNSFDAVY 201

Query: 158 TMSLCEAATFFA------LEMLNIGGDFLVKTFQGGTTND 191
            +     A   A        +L  GG F V  +      D
Sbjct: 202 AIEATVHAPRLAGVYGEIFRVLKPGGVFGVYEWLMTDDYD 241


>gi|304392692|ref|ZP_07374632.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp.
           R2A130]
 gi|303295322|gb|EFL89682.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp.
           R2A130]
          Length = 471

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL---DMEPIL-GVKFFKFDFLDLD 123
            +R++DL ++PG  +   A    S        +       +ME +   V+  + D  + +
Sbjct: 266 GKRVLDLCAAPGGKTAQLAAAGASVTALELNASRLHRLKGNMERLKLDVETIEGDLFEYE 325

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE---MLNIGGDFL 180
             E     +   P   L  +                 L +            +  GG  +
Sbjct: 326 PAELFDAVLLDAPCSSLGTIRRHPDVQWAKSQAIVEELADLQKRMCEHAATFIKPGGTLI 385


>gi|218457798|gb|ACK77585.1| polymerase [Recombinant vesicular stomatitis Indiana virus
            rVSV-G/GFP]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|149941286|emb|CAM84182.2| polymerase [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|149941171|emb|CAM84177.1| polymerase [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|144678905|gb|ABP01784.1| large protein [Vesicular stomatitis Indiana virus]
 gi|194272588|gb|ACF37251.1| L protein [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|81965433|sp|Q98776|L_VSIVM RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|336028|gb|AAA48441.1| polymerase [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|9627234|ref|NP_041716.1| polymerase (L protein) [Vesicular stomatitis Indiana virus]
 gi|335878|gb|AAA48371.1| polymerase (L protein) [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|1173173|sp|P03523|L_VSIVA RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|61851|emb|CAA25453.1| polymerase L [Vesicular stomatitis virus]
          Length = 2109

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 115  FKFDFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
            +  D  D  +W+    ++  +G   DL++ DM                        +   
Sbjct: 1732 YPSDLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHR 1784

Query: 172  MLNIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +L+  G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1785 ILDEQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|328544921|ref|YP_004305030.1| ribosomal RNA large subunit methyltransferase J [polymorphum gilvum
           SL003B-26A1]
 gi|326414663|gb|ADZ71726.1| Ribosomal RNA large subunit methyltransferase J [Polymorphum gilvum
           SL003B-26A1]
          Length = 247

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 46  GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           G+ +R+A KLL   ++  +  ++R  +D+G+S G ++QV            RV AID+
Sbjct: 60  GYVSRAALKLLAGLDQFGVDPADRVCLDIGASTGGFTQVLLERGAE-----RVHAIDV 112


>gi|320449902|ref|YP_004201998.1| ribosomal RNA large subunit methyltransferase J [Thermus
           scotoductus SA-01]
 gi|320150071|gb|ADW21449.1| ribosomal RNA large subunit methyltransferase J [Thermus
           scotoductus SA-01]
          Length = 244

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 26/137 (18%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E + +R AYKLL   E   +    +   D+G+S G ++QV            RV A+D+
Sbjct: 53  PERYVSRGAYKLLGALEAFAVKVEGKVAADIGASTGGFTQVLLERGAR-----RVYAVDV 107

Query: 104 -LDMEPILGVKFFKFD--FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
             D          + D   + L+  +     +    DLV+ D++             + +
Sbjct: 108 GRDQLHPR----LREDSRVVSLEEQDARSLLLPEPVDLVVMDVS-----------FISST 152

Query: 161 LCEAATFFALEMLNIGG 177
           L  +      E+L  GG
Sbjct: 153 LLLSKVK---ELLKPGG 166


>gi|124481938|gb|ABN11820.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|322510060|sp|P09732|POLG_STEVM RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName: Full=Serine
            protease subunit NS2B; AltName: Full=Flavivirin protease
            NS2B regulatory subunit; AltName: Full=Non-structural
            protein 2B; Contains: RecName: Full=Serine protease NS3;
            AltName: Full=Flavivirin protease NS3 catalytic subunit;
            AltName: Full=Non-structural protein 3; Contains:
            RecName: Full=Non-structural protein 4A; Short=NS4A;
            Contains: RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=NS5
 gi|124481922|gb|ABN11812.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|124481940|gb|ABN11821.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|124481946|gb|ABN11824.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|124481932|gb|ABN11817.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|123205972|ref|YP_001008348.1| polyprotein [St. Louis encephalitis virus]
 gi|109692179|gb|ABG37975.1| polyprotein [St. Louis encephalitis virus]
          Length = 3430

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 2675 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 2728

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 2729 GLVRV--PL-SRNSTHEMYWV 2746


>gi|7939631|gb|AAF70827.1| polyprotein [St. Louis encephalitis virus]
          Length = 1460

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 1039 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 1096

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +        D VL D+   
Sbjct: 1097 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAEPADTVLCDIGES 1148

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKTFQGGTTNDILCLLKKHFQK--- 202
                 +++  RT            E L  G   F +K      T  I+  L+K  +K   
Sbjct: 1149 NPSC-EVEEARTA----RVLDMVEEWLKKGATEFCIKVL-CPYTPKIIEKLEKLQRKYGG 1202

Query: 203  --VIHVKPVASRAESVEMFLL 221
              V    P+ SR  + EM+ +
Sbjct: 1203 GLVRV--PL-SRNSTHEMYWV 1220


>gi|283458437|ref|YP_003363061.1| putative rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134476|dbj|BAI65241.1| predicted rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 242

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 24/150 (16%)

Query: 38  YVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNT 96
           YV++++L  + +R+ +KL    +    ++   +R +D G+S G ++ V  R   ++    
Sbjct: 49  YVRQSELTEYVSRAGHKLAGALDAFPDIEVEGKRCLDAGASTGGFTDVLLRRGAAHVAAV 108

Query: 97  RV---VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
            V     +D L  EP +GV      +  L+      + IGG  +L +SD++         
Sbjct: 109 DVGHGQLVDTLREEPRVGV------YEGLNVRYMKPEDIGGQVELTVSDLS--------- 153

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               +++L   A   A E    GGD ++  
Sbjct: 154 --FISLTLVMEALANATE---TGGDLVLMV 178


>gi|118590386|ref|ZP_01547788.1| putative methyltransferase protein [Stappia aggregata IAM 12614]
 gi|118436849|gb|EAV43488.1| putative methyltransferase protein [Stappia aggregata IAM 12614]
          Length = 392

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
            ++  KH  L+   ++ D+    G ++ +  +    +    R+VA+D      +   +  
Sbjct: 149 KELLRKHG-LKPGMQVADICCGIGDFAVLLQKEFEPD----RLVALDHSR-SSLDYARRV 202

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP-TIGHRKIDHLRTMSLCEAATFFALEMLN 174
             DF        I    G   D++L D  +        +       L     +    +  
Sbjct: 203 AADFG----IRGIDYVFGDAADMLLEDNQFDFVTCRHSLQVFDQPELILKELY---RICK 255

Query: 175 IGG 177
            GG
Sbjct: 256 PGG 258


>gi|90020800|ref|YP_526627.1| putative RNA 2'-O-ribose methyltransferase [Saccharophagus
           degradans 2-40]
 gi|123277459|sp|Q21LL4|RLMM_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|89950400|gb|ABD80415.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 349

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 21/107 (19%)

Query: 40  QRAQLEGWRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWS-QVAARITGS 91
           +    +   +R+  KL +   +        Q +  + R VDLG++PG W+ Q+  +    
Sbjct: 172 RLRAPKDAPSRATLKLEEAWHQFIPREQWDQRIAPSMRAVDLGAAPGGWTWQLVNKSMFV 231

Query: 92  NANNTRVVAIDI-------------LDMEPILGVKFFKFDFLDLDSW 125
            A +   +A +I                 P   V +   D  D  + 
Sbjct: 232 EAVDNGPMAENIMASGQVTHRMEDAFRFAPERAVHWLVSDIADKPAR 278


>gi|291618648|ref|YP_003521390.1| MtfA [Pantoea ananatis LMG 20103]
 gi|291153678|gb|ADD78262.1| MtfA [Pantoea ananatis LMG 20103]
 gi|327395028|dbj|BAK12450.1| putative RNA 2'-O-ribose methyltransferase MtfA [Pantoea ananatis
           AJ13355]
          Length = 366

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFVPADEWDERLASGMYAVDLGACPGGWTYQLVQR------SMMVY 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|126010839|ref|YP_001040007.1| polyprotein [Kokobera virus]
 gi|54399540|gb|AAV34157.1| polyprotein [Kokobera virus]
          Length = 3410

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 28/238 (11%)

Query: 6    GSSSRRGLTQKVKNRSCQGSS---RDWLNRHI----NDPYVQRAQLEG------WRARSA 52
            G      L +K K R  Q ++     +   HI     +P  + A   G        +R +
Sbjct: 2508 GGGIGETLGEKWKARLNQMNTLEFHRYRRSHIMEVDREP-ARAALKSGDFTRGAAVSRGS 2566

Query: 53   YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV 112
             KL  ++E+   ++ + ++VDLG   G W   +A +                + EP+L  
Sbjct: 2567 AKLRWMHER-GYIRLHDKVVDLGCGRGGWCYYSATVKEVKEVKGYTKGGRGHE-EPVLT- 2623

Query: 113  KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
            + + ++ + + S   +        D+VL D+         ++  R+          A   
Sbjct: 2624 QSYGWNIVQMKSGVDVFYKEAEPCDVVLCDIG-ECSSSPAVEADRS----TKVLELAERW 2678

Query: 173  L--NIGGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            L  N G DF +K          + L  L+  +   +   P+ SR  + EM+ +  G++
Sbjct: 2679 LERNDGADFCIKVLCPYMPEVVEKLSKLQLRYGGCLVRNPL-SRNSTHEMYWV-SGYK 2734


>gi|291458758|ref|ZP_06598148.1| SAM-dependent methyltransferase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418675|gb|EFE92394.1| SAM-dependent methyltransferase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 261

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 5/136 (3%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L      +D+G   G+     A+         RV+ ID    E     K       + + 
Sbjct: 91  LPEGGSCLDIGCGSGALGIAVAKRNPG----ARVIGIDRWGREYASFSKALCEGNAEAEG 146

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-T 183
              I    G    L   D ++  +    + H       +A     L  L  GG F +   
Sbjct: 147 VSNICFRKGDALHLDFPDESFDAVTSNYVYHNIPSHDRQAILLETLRTLKKGGSFAIHDI 206

Query: 184 FQGGTTNDILCLLKKH 199
           F      D+   L++ 
Sbjct: 207 FSVSKYGDMKAFLQRL 222


>gi|322700280|gb|EFY92036.1| SAM binding domain-containing protein containing protein
           [Metarhizium acridum CQMa 102]
          Length = 563

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +  +R++++G   G WS +  R      + +     ID+  + P  G      D    D 
Sbjct: 237 KPPQRVLEVGCGSGFWSMMCHRYFKERGHGSICFTGIDVAPLSP--GSANLTEDATQPDP 294

Query: 125 ---WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
              W+F+   +   P  V S   Y  +  + +    T +  +      L +L  GG    
Sbjct: 295 DMRWKFVNHDLRQLPWPVPS-EEYDLVMVKDMSLAMTNAQNQLFIDEYLRLLRPGGTL-- 351

Query: 182 KTFQGGTTNDILCLLKKH 199
              +   ++ ++ +L+ H
Sbjct: 352 ---EIWESDHLIRMLRPH 366


>gi|284038796|ref|YP_003388726.1| methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283818089|gb|ADB39927.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 298

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 26/127 (20%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV--------AIDILDMEPILGV 112
           +   ++    ++DLGS  G+   VA   TG       +         A    D      V
Sbjct: 71  QFAQIKPGDTVIDLGSGAGNDCFVARHETGPTGKVIGIDFTEAMISRARKNADTLGYNNV 130

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           +F   D  ++   +          D+++S+     + ++K                   +
Sbjct: 131 EFRFGDIEEMPVAD-------NTADVIVSNCVLNLVPNKKNVISEIW-----------RV 172

Query: 173 LNIGGDF 179
           L  GG F
Sbjct: 173 LKPGGHF 179


>gi|293392481|ref|ZP_06636801.1| cyclopropane-fatty-acyl-phospholipid synthase [Serratia odorifera
           DSM 4582]
 gi|291424883|gb|EFE98092.1| cyclopropane-fatty-acyl-phospholipid synthase [Serratia odorifera
           DSM 4582]
          Length = 430

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 23/141 (16%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA-IDILDMEPILG- 111
           KL  I EK + LQ    ++D+G   G  +Q AA   G   +   + A    +  +   G 
Sbjct: 202 KLKMICEKLR-LQPGMSLLDIGCGWGGLAQYAAEQYGVKVHGVTISAEQQKMAQQRCAGL 260

Query: 112 -VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            V+    D+ D          +    D ++S   +  +G +  D              A 
Sbjct: 261 EVEILLQDYRD----------LHRQFDRIVSVGMFEHVGPKNYDTY---------FNVAA 301

Query: 171 EMLNIGGDFLVKTFQGGTTND 191
             L   G FL+ T     T+ 
Sbjct: 302 RNLKPNGLFLLHTIGSNQTDL 322


>gi|311694995|gb|ADP97868.1| putative RNA 2'-O-ribose methyltransferase [marine bacterium HP15]
          Length = 358

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RSA KL +         ++   L   ++  DLG++PG W+               V 
Sbjct: 187 APSRSALKLEEAWKVFLPPEQELDYLGGGKKAADLGAAPGGWT------WQLVHQGMMVT 240

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 241 AVDNGPMNP 249


>gi|257056536|ref|YP_003134368.1| hemolysin A [Saccharomonospora viridis DSM 43017]
 gi|256586408|gb|ACU97541.1| hemolysin A [Saccharomonospora viridis DSM 43017]
          Length = 276

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKH---QILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
           V+     GW +R AYKLL   E+     +    RR +D G+S G ++ V  R  G+ +  
Sbjct: 54  VRTEDDPGWASRGAYKLLGALEEFTPRGLTVKGRRCLDAGASTGGFTDVLLR-EGAESVV 112

Query: 96  TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              V   +LD       +    D  ++ +      AIGG  +LV++D++
Sbjct: 113 AVDVGRGLLDWRLRTDDRVTVLDKTNVRTLT--PDAIGGVVELVVADLS 159


>gi|145224093|ref|YP_001134771.1| hemolysin A [Mycobacterium gilvum PYR-GCK]
 gi|315444430|ref|YP_004077309.1| hemolysin A [Mycobacterium sp. Spyr1]
 gi|145216579|gb|ABP45983.1| hemolysin A [Mycobacterium gilvum PYR-GCK]
 gi|315262733|gb|ADT99474.1| hemolysin A [Mycobacterium sp. Spyr1]
          Length = 268

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           V+    + W +R A+KL+   +   +  + RR +D G+S G +++V             V
Sbjct: 54  VEAGDEDSWVSRGAHKLIGALDVFGLTVAGRRCLDAGASTGGFTEVLLSRDVREVVAVDV 113

Query: 99  -VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
                   +     V   +      +  +   +AIGG  DLV++D++
Sbjct: 114 GYGQLAWSVRTDPRVTVME----RTNVRDLTAEAIGGPVDLVVADLS 156


>gi|255953071|ref|XP_002567288.1| Pc21g02240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588999|emb|CAP95121.1| Pc21g02240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 338

 Score = 40.7 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 17/117 (14%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           RRI+D+G+ PG W+         +     V+  D+  ++P       +F   D +S    
Sbjct: 94  RRILDIGTGPGEWALE----MAEDYPQADVIGTDLSPIQPNWSPPNCRFYIDDAESD--W 147

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             + G   D +        IG       +           A + L  GG F  + F+
Sbjct: 148 TFSPGEAFDYIHLRTMAGGIGDWPKLIKQ-----------AYQHLKPGGWFEAQEFE 193


>gi|39969919|ref|XP_366350.1| hypothetical protein MGG_10568 [Magnaporthe oryzae 70-15]
 gi|149209247|ref|XP_001521998.1| hypothetical protein MGCH7_ch7g116 [Magnaporthe oryzae 70-15]
 gi|86196071|gb|EAQ70709.1| hypothetical protein MGCH7_ch7g116 [Magnaporthe oryzae 70-15]
 gi|145021757|gb|EDK05834.1| hypothetical protein MGG_10568 [Magnaporthe oryzae 70-15]
          Length = 380

 Score = 40.7 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 23/133 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++    ++D+G   G  ++  A+ TG N     VV ++  D +            +D  +
Sbjct: 127 IKEGMTVLDVGCGVGGPAREIAKFTGCN-----VVGLNNNDYQ------------IDRAT 169

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               ++ +      V  D    +      D +  +     A            +L  GG 
Sbjct: 170 HYAKQEKLDSQLQFVKGDFMQMSFPDESFDAVYAIEATVHAPKLEGVYSEIFRVLKPGGT 229

Query: 179 FLVKTFQGGTTND 191
           F V  +      D
Sbjct: 230 FGVYEWLMTDDYD 242


>gi|239827028|ref|YP_002949652.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70]
 gi|239807321|gb|ACS24386.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70]
          Length = 454

 Score = 40.7 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 19/130 (14%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLD 121
               ++DL ++PG       ++     N   ++A +I       +   +         + 
Sbjct: 101 PGEFVLDLCAAPGG---KTTQLAAMMKNQGLIIANEIHPKRVKALSENIERFGITNALVT 157

Query: 122 LDSWEFIRQAIGGNPDLVLSDM-----AYPTIGHRKIDHLRTMSLCEAA------TFFAL 170
            ++ E + +   G  D +L D               +       + + A         A 
Sbjct: 158 NETPEKLAKYFPGFFDKILVDAPCSGEGMFRKDEEAVQFWSQAHVEQCAIKQRHILDCAY 217

Query: 171 EMLNIGGDFL 180
           EML  GG  +
Sbjct: 218 EMLKEGGILV 227


>gi|323522318|gb|ADX94786.1| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 40.7 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIRKFQ-WEPKGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            N+     +     +       K      L          A+       +      +    
Sbjct: 2560 NSVMGLTLGGANRENPLPFKTKGHNLAVLKAGVD---VYALEPRDCNTIVCDIGESDPRP 2616

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKP 208
            +++  RT            + L  N G  F  K         +    + +H      V+ 
Sbjct: 2617 EVEKTRT----LKVLTMLEKWLVHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHNGKLVRL 2672

Query: 209  VASRAESVEMFLL 221
              SR  + EM+ +
Sbjct: 2673 SLSRNSTAEMYYI 2685


>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 441

 Score = 40.7 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL----------GVKFF 115
           Q   R++D  ++PG     +  I         +VA+D+                      
Sbjct: 245 QPGERVLDACAAPGG---KSCHILEQQPQLAELVALDVDPWRLTRVQQNLDRLGLTATLK 301

Query: 116 KFDFLDLDSW---EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---A 169
             D  D  SW   +   + +   P      +                 L E         
Sbjct: 302 CGDGTDPQSWWDGQAFDRILLDAPCSATGVIRRNPDSKWLRRDEDIAQLAELQGKILRAC 361

Query: 170 LEMLNIGGDFL 180
            +ML  GG  +
Sbjct: 362 WQMLKPGGTLV 372


>gi|302541942|ref|ZP_07294284.1| methyltransferase domain protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459560|gb|EFL22653.1| methyltransferase domain protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 553

 Score = 40.7 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           +  +      ++DL +  GSW++  AR  G N      +A D+LD               
Sbjct: 388 RDHVRPVGGPVLDLAAGAGSWTRTLARSAGENQVIALDLATDMLD--------------R 433

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
              +   +    G   +L   D +   +     + L+ M   EAA       L+ GG F 
Sbjct: 434 LRATQPGVLALRGSAVELPFGDASLGAVNCW--NALQAMDDPEAAIREVGRCLHPGGTFT 491

Query: 181 VKTFQGGTTNDI--LCLLKKHFQKVIHVKPVA 210
           V TFQ            + +    V    P A
Sbjct: 492 VLTFQPARDPVYRHFQAMIEDCLGVRSFDPEA 523


>gi|315652701|ref|ZP_07905675.1| O-methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315484903|gb|EFU75311.1| O-methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 249

 Score = 40.7 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 12/145 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           + +   VDL +  G    + +  T +       +  DI DM            K D ++ 
Sbjct: 48  KKDGYAVDLCTGSGIVPILLSTKTKAKKITGIEIQSDIADMASRSVSYNKLDEKIDIIND 107

Query: 123 DSWEFIRQAIGGNPDLVLS------DMAYPTIGHRKIDHLRTMSLC--EAATFFALEMLN 174
           D    ++       D V        DMA        +   R   L   E+    A ++L 
Sbjct: 108 DISNALKYIKHSCVDTVCVNPPYMKDMAAIKNPDLPLAIARHELLTDLESVINIANKLLK 167

Query: 175 IGGDFLVKTFQGGTTNDILCLLKKH 199
             G F     +    ++I   +K++
Sbjct: 168 ENGRFF-MIHRPSRLSEIFASMKQN 191


>gi|302528025|ref|ZP_07280367.1| ribosomal RNA large subunit methyltransferase J [Streptomyces sp.
           AA4]
 gi|302436920|gb|EFL08736.1| ribosomal RNA large subunit methyltransferase J [Streptomyces sp.
           AA4]
          Length = 275

 Score = 40.7 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 45  EGWRARSAYKLLQINEKH---QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
            GW +R A+KLL   ++     +    RR +D G+S G ++ V  R  G+       V  
Sbjct: 63  PGWASRGAHKLLGALDRFGPEGLTVEGRRCLDAGASTGGFTDVLLR-NGAEKVIAADVGR 121

Query: 102 DILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            +LD +     +    D    +        +GG  DLV+ D++
Sbjct: 122 GLLDWKLQTDDRVVVLDRT--NVRNLTPDVLGGQVDLVVGDLS 162


>gi|46201060|ref|ZP_00207948.1| COG2933: Predicted SAM-dependent methyltransferase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 306

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 17/100 (17%)

Query: 48  RARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            +R+  KL +       +    +  +DLG+ PG W+ V A      A   RV+++D   +
Sbjct: 147 PSRAYLKLWEALTLAGEMPGPGQTCIDLGACPGGWTWVLA------ATGARVISVDKAPL 200

Query: 107 EP----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
            P    +  V + +     L+  E       G  D + SD
Sbjct: 201 APNVAAMPNVDYRQGSAFGLEPAEI------GRVDWLCSD 234


>gi|81945908|sp|Q8B0I0|L_VSIVN RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|23305067|gb|AAN16984.1| L polymerase protein [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 118  DFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            D  D  +W+    ++  +G   DL++ DM                        +   +L+
Sbjct: 1735 DLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIETN-------VRNYVHRILD 1787

Query: 175  IGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1788 EQGVLIYKTYGTYICESEKNAVTILGPMFKTVDLVQTEFSSSQTSEVYMVCKGLKK 1843


>gi|47458915|ref|YP_015777.1| putative rRNA methylase [Mycoplasma mobile 163K]
 gi|47458243|gb|AAT27566.1| putative rRNA methylase [Mycoplasma mobile 163K]
          Length = 241

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQ--SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           + E + +R AYKLL   E+  + +   N+ ++D+GSS G + +V  +  G+       V 
Sbjct: 54  KKE-YVSRGAYKLLDAIEEFNLKKEIKNKIVLDIGSSTGGFIEVLLK-YGAEKVFALDVG 111

Query: 101 IDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            + LD    +  K    +  +L   +  +       +LV  D++
Sbjct: 112 TNQLDYSLRINPKVISKENTNLK--QISKNLFSEKIELVTCDVS 153


>gi|254471800|ref|ZP_05085201.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
 gi|211959002|gb|EEA94201.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
           JE062]
          Length = 243

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R+A KL++  E   +  +++  +D+G+S G ++QV     G+   +   V  D L  
Sbjct: 57  YVSRAALKLIKGLEHFALDPADKICLDIGASTGGFTQVLLE-QGAKVVHAIDVGHDQLAE 115

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
           +     +  + D L+      +    G +P+ ++SD++             ++ L   A 
Sbjct: 116 KISNDPRVIRKDGLNAREL-TLEDLEGQHPEFLVSDVS-----------FISLKL---AL 160

Query: 167 FFALEMLNIG--GDFLVK 182
             ALE+   G  G FLVK
Sbjct: 161 PPALELAADGAVGVFLVK 178


>gi|68074343|ref|XP_679086.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499741|emb|CAH98789.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 1179

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEM 218
           LC +    AL M+NIGG F++K         +    +L   F+K+   +P      ++ +
Sbjct: 320 LCISQLVCALGMMNIGGYFIMKIKLSFDNFLLSVFSILSICFKKLEVYRPSCCYLRNI-I 378

Query: 219 FLLAKGF 225
           F++   F
Sbjct: 379 FVIGVHF 385


>gi|82541789|ref|XP_725110.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479993|gb|EAA16675.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 826

 Score = 40.7 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEM 218
           LC +    AL M+NIGG F++K         +    +L   F+K+   +P      ++ +
Sbjct: 320 LCISQLVCALGMMNIGGYFIMKIKLSFDNFLLSVFSILSICFKKLEVYRPSCCYLRNI-I 378

Query: 219 FLLAKGF 225
           F++   F
Sbjct: 379 FVIGVHF 385


>gi|257456920|ref|ZP_05622101.1| methyltransferase [Treponema vincentii ATCC 35580]
 gi|257445629|gb|EEV20691.1| methyltransferase [Treponema vincentii ATCC 35580]
          Length = 285

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 18  KNRSCQGSSRDWLNRHINDPYVQRAQL---EGWRARSAYKLL----QINEKHQILQSNRR 70
           +N   +   + W    + D Y +RA     +  + R A   L     +     + Q+  R
Sbjct: 90  QNPPSRAYLKLWEALTLLDFYYRRAAEISFQPAKTRVAEAHLLSTPSVPADWALPQAGAR 149

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
            VD G+ PG W+ V   +        R    D L  EP   + F + D   L+      +
Sbjct: 150 CVDAGACPGGWTWVLNNLGAEITAIDRSPLADFLMREP--RITFMQHDAFTLNP-----E 202

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
           ++G    +    + YP      ++  R   LC
Sbjct: 203 SLGTQDWVFSDVICYPPRLLEWVERWRASGLC 234


>gi|257387187|ref|YP_003176960.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169494|gb|ACV47253.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 246

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 31/124 (25%), Gaps = 30/124 (24%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------MEPILGVKFFKFDF 119
              ++DLG   G     A R         RV  ID                 V F   DF
Sbjct: 58  GDTVLDLGCGSG----YAGRALRETKGAGRVYGIDAAPEMAHNASSYTDDPRVGFAIGDF 113

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                     + +  + D +    +     + +  H     L          +L  GG F
Sbjct: 114 ----------EHLPFDDDSIDHCFSMEAFYYAQDPHAVLAEL--------RRVLRPGGTF 155

Query: 180 LVKT 183
               
Sbjct: 156 YCAV 159


>gi|160896595|ref|YP_001562177.1| cyclopropane-fatty-acyl-phospholipid synthase [Delftia acidovorans
           SPH-1]
 gi|160362179|gb|ABX33792.1| Cyclopropane-fatty-acyl-phospholipid synthase [Delftia acidovorans
           SPH-1]
          Length = 442

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             DP +  AQ +        KL  I  K   L+   R +D+G+  G+    AA   G  A
Sbjct: 165 FRDPQMTLAQAQEA------KLDHICRKLD-LRPGERFLDIGAGWGALLVWAAEHYGVTA 217

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               +       ++ ++  +  +    D+   ++   A G   D + S   +  +G  K+
Sbjct: 218 TGITLSHNQHRYVQQLIAERGLQGKV-DMQLLDYRALAPGQPFDKIGSVGMFEHVGQAKL 276

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
                             +L  GG  L+     G  ++
Sbjct: 277 PEYFQTV---------HRLLRPGGMALIHGITAGGVDN 305


>gi|296109615|ref|YP_003616564.1| THUMP domain protein [Methanocaldococcus infernus ME]
 gi|295434429|gb|ADG13600.1| THUMP domain protein [Methanocaldococcus infernus ME]
          Length = 326

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 49  ARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           +R+  K+ ++ +K   I +    ++D+GS+PG W +V + ++       +V A+D  +++
Sbjct: 168 SRAENKIRELIDKFPHIFKDLNVVLDIGSAPGGWVKVLSEVSK------KVYAVDPAELK 221


>gi|151266286|ref|YP_001331035.1| RNA polymerase [Porcine rubulavirus]
 gi|150010952|tpg|DAA06049.1| TPA_inf: RNA polymerase [Porcine rubulavirus]
          Length = 2251

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 108  PILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
            P+   +  + D    +  E+I   +G     LV  D+    IG        T+     + 
Sbjct: 1876 PLWTGQSVQTDLNRKECTEYIINKVGVETCGLVHVDLEDFAIGPSAELTAGTIH----SI 1931

Query: 167  FFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
              A  +L  GG  + KT+       + ++ +L   F++V  ++   S     E++L
Sbjct: 1932 IIATTVLKPGGALVFKTYWTPFSRFSRLISVLWMFFEEVTAIRSSYSDPHKTEVYL 1987


>gi|2121316|emb|CAA66807.1| RNA polymerase [Porcine rubulavirus]
          Length = 2251

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 108  PILGVKFFKFDFLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
            P+   +  + D    +  E+I   +G     LV  D+    IG        T+     + 
Sbjct: 1876 PLWTGQSVQTDLNRKECTEYIINKVGVETCGLVHVDLEDFAIGPSAELTAGTIH----SI 1931

Query: 167  FFALEMLNIGGDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFL 220
              A  +L  GG  + KT+       + ++ +L   F++V  ++   S     E++L
Sbjct: 1932 IIATTVLKPGGALVFKTYWTPFSRFSRLISVLWMFFEEVTAIRSSYSDPHKTEVYL 1987


>gi|239908194|ref|YP_002954935.1| hypothetical protein DMR_35580 [Desulfovibrio magneticus RS-1]
 gi|239798060|dbj|BAH77049.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 304

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 46  GWRARSAYKLLQINEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           G  +R+  KL ++  +     +     +D+G SPG WS V A +        +    D +
Sbjct: 144 GPPSRAYLKLWELFTRLGTAPRPGELCLDMGGSPGGWSFVLASLGARVFCIDKAPLADNV 203

Query: 105 DMEPI 109
           D  P+
Sbjct: 204 DKHPL 208


>gi|307294658|ref|ZP_07574500.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
 gi|306879132|gb|EFN10350.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
          Length = 395

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 67  SNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAID--------ILDMEPILGVKFFKF 117
               ++DL +  G  +  +A+ + G+      ++A D        +       G  F + 
Sbjct: 199 PGMTVIDLCAGAGGKTLALASALGGNGGGKGVLIAADTIRSRLARLDPQAERAGATFIET 258

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA-----------AT 166
             LD        +++ G  D+VL D      G  + +      L  A             
Sbjct: 259 LLLDQGHEAGALESLNGRADIVLVDAPCSGTGTWRRNPEARWRLTPARLDRLVAEQARIL 318

Query: 167 FFALEMLNIGGDFLVKT 183
            FA  +L  GG  +   
Sbjct: 319 DFAAPLLAPGGALVYAV 335


>gi|229145821|ref|ZP_04274201.1| hypothetical protein bcere0012_29710 [Bacillus cereus BDRD-ST24]
 gi|228637652|gb|EEK94102.1| hypothetical protein bcere0012_29710 [Bacillus cereus BDRD-ST24]
          Length = 415

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKITDEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEATVSPYKP 291


>gi|254429716|ref|ZP_05043423.1| hypothetical protein ADG881_2946 [Alcanivorax sp. DG881]
 gi|196195885|gb|EDX90844.1| hypothetical protein ADG881_2946 [Alcanivorax sp. DG881]
          Length = 353

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 47  WRARSAYKLLQINEKH---QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
             +RSA K+ +   +        + R  VDLG++PG WS   AR         RV A+D 
Sbjct: 182 APSRSALKVEEALIRFFGSADALNARTAVDLGAAPGGWSWQLARR------GIRVQAVDH 235

Query: 104 LDMEP 108
             M+P
Sbjct: 236 GKMDP 240


>gi|308176181|ref|YP_003915587.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743644|emb|CBT74616.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 201

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + +  I+D+G  PG W+         +A    VV ID         V  F  D      +
Sbjct: 41  KRDGLILDVGCGPGQWTNFL------HATGAEVVGID--------PVHEFVVD--AQARY 84

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
             +   +G   +L + D +   I     + H     L      FA  +L  GG  L+  F
Sbjct: 85  PQVDYRLGQAENLDVPDASVAGILAWYSLIHTNPSDLGAVLDEFA-RVLRPGGSLLLGFF 143

Query: 185 QGGT 188
           +G  
Sbjct: 144 EGPE 147


>gi|81964109|sp|Q91RA4|LMBD2_REOVJ RecName: Full=Outer capsid protein lambda-2; Short=Lambda2;
           AltName: Full=Lambda2(Cap); Includes: RecName: Full=mRNA
           guanylyltransferase; Includes: RecName: Full=mRNA
           (guanine-N(7)-)-methyltransferase
 gi|14211774|gb|AAK57509.1|AF378005_1 core-spike protein lambda-2 [Mammalian orthoreovirus 2]
          Length = 1288

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  +     ++ F +D  
Sbjct: 505 LRAGQSVAYFGASAG----------HSGADQPLVIEPWLQGKISGVPSPASIRQFGYDVA 554

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    + +L E+     ++  + GG F+
Sbjct: 555 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSNLVESILSSCMQATSPGGSFV 612

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
            K      +       K        + +KP  +   +VE+F +A G
Sbjct: 613 AKINFPTRSIWYYIEQKILPNITSYMIIKPFVT--NNVEVFFVAFG 656


>gi|322708234|gb|EFY99811.1| SAM binding domain-containing protein containing protein
           [Metarhizium anisopliae ARSEF 23]
          Length = 603

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 28/146 (19%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +  +R++++G   G WS +  R      + +     IDI  + P  G      D    D 
Sbjct: 277 KPPQRVLEVGCGSGFWSMMCHRYFKERGHGSICFTGIDIAPLSP--GSADLTEDATQPDP 334

Query: 125 ---WEFIRQAI--------GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
              W+F+   +            DLV+         + +  H     L          +L
Sbjct: 335 DMRWKFVNHDLRQLPWPVPSEEYDLVMVKDMSLATTNVQNQHFIDEYL---------RLL 385

Query: 174 NIGGDFLVKTFQGGTTNDILCLLKKH 199
             GG       +   ++ ++ +L+ H
Sbjct: 386 RPGGTL-----EIWESDHLIRMLRPH 406


>gi|139948562|ref|NP_001077139.1| NOL1/NOP2/Sun domain family, member 6 [Bos taurus]
 gi|134024543|gb|AAI34425.1| NSUN6 protein [Bos taurus]
          Length = 408

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 28/140 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF 114
           Q   +I+DL ++PG  +   A +         V+A+D +  +            +  ++ 
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMHDQGE---VIALDKISKKVEKIKQNALLLGLNSIRA 289

Query: 115 FKFDFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS- 160
           F FD       + ++   G  P           D   S M           +  + +   
Sbjct: 290 FCFDGTKALKLDMVKDTDGEPPFLPESFDRILLDAPCSGMGQRPNMACTWTLKEVMSYQP 349

Query: 161 LCEAATFFALEMLNIGGDFL 180
           L       A+E+L  GG  +
Sbjct: 350 LQRKLFTVAVELLKPGGVLV 369


>gi|294935979|ref|XP_002781579.1| hypothetical protein Pmar_PMAR009324 [Perkinsus marinus ATCC 50983]
 gi|239892429|gb|EER13374.1| hypothetical protein Pmar_PMAR009324 [Perkinsus marinus ATCC 50983]
          Length = 301

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 20/138 (14%)

Query: 49  ARSAYKLLQINEKHQI----LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
            ++ YKL +   +        +     +D+G+SPG WS+        N    R++A+D  
Sbjct: 125 CKAEYKLAEAFRRFGFEFGEKRDEMTAIDVGASPGGWSRYLY-----NEGVGRIIAVDKG 179

Query: 105 DMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           +++        +  D L  ++ + + +  G    L +       +    +    +     
Sbjct: 180 EVDCSKSDGKIEHWDMLGQEAIQKLLEHEGHRESLDV------YVCDANLPPPES----L 229

Query: 164 AATFFALEMLNIGGDFLV 181
           A    A E++  G   +V
Sbjct: 230 AMLRQASELIKPGAYVVV 247


>gi|39971853|ref|XP_367317.1| hypothetical protein MGG_07242 [Magnaporthe oryzae 70-15]
 gi|145019740|gb|EDK03968.1| hypothetical protein MGG_07242 [Magnaporthe oryzae 70-15]
          Length = 328

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 26/120 (21%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLD 123
              R++D+G+ PG W+   +           V+  D+  ++P        F+  D  +  
Sbjct: 85  PPTRVLDIGTGPGQWAIEISDEFPEAE----VIGTDLSPIQPNEVPENCYFYVDDSSEEW 140

Query: 124 SWEFIRQAIGGNPDLVL-SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            + F    I         SDM    I                    AL  L  GG    +
Sbjct: 141 DFGFDFSYIHTRLTFGCFSDMRTQVIDQ------------------ALRNLKPGGWLECQ 182


>gi|147921688|ref|YP_684492.1| tRNA/rRNA cytosine-C5-methylase [uncultured methanogenic archaeon
           RC-I]
 gi|110619888|emb|CAJ35166.1| putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family)
           [uncultured methanogenic archaeon RC-I]
          Length = 316

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 20/130 (15%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNA-------NNTRV------VAIDILDMEPILGVK 113
               ++D+ +SPG  +   A++  +            R+      +    +    I  + 
Sbjct: 119 PGDTVIDMAASPGGKTTHIAQLMNNEGLIVAIEKEPGRIPSLRTNIGRCGVMNTAIYNMD 178

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR---TMSLCEAATFFAL 170
             + D + + + + +  A      ++  D +  T                L +AA     
Sbjct: 179 ALEADKIGVKADKILLDAPCTGEGVIARDRSRKTSREEADIQFCSTVQHELIDAALK--- 235

Query: 171 EMLNIGGDFL 180
            +L  GG  +
Sbjct: 236 -VLKPGGTLV 244


>gi|218671119|ref|ZP_03520790.1| hemolysin A [Rhizobium etli GR56]
          Length = 172

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           + + +R+A KL    E  ++  +    +D+G+S G +++V  +   ++     V      
Sbjct: 74  QDYVSRAALKLASALEHFRLDPAGHHCLDIGASTGGFTEVLLQRGAAHVTAIDVGHGQMH 133

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             +     V   +     L++     + IG     ++SD++
Sbjct: 134 PRISGDPRVTNKEG----LNARNLTAEDIGHPASFIVSDVS 170


>gi|270263627|ref|ZP_06191896.1| hypothetical protein SOD_e02510 [Serratia odorifera 4Rx13]
 gi|270042511|gb|EFA15606.1| hypothetical protein SOD_e02510 [Serratia odorifera 4Rx13]
          Length = 383

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 17/130 (13%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I EK Q L+    ++D+G   G  +Q AA   G +     V  + I   +  L  +
Sbjct: 155 KLKMICEKLQ-LKPGMSLLDIGCGWGGLAQYAAENYGVS-----VYGVTISAEQQKLAQE 208

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             +   LD++      + +    D ++S   +  +G +  D   +          A   L
Sbjct: 209 RCQG--LDVEILLQDYRDLNRQFDRIVSVGMFEHVGPKNYDTYFS---------VAERNL 257

Query: 174 NIGGDFLVKT 183
              G FL+ T
Sbjct: 258 KPDGLFLLHT 267


>gi|159476740|ref|XP_001696469.1| hypothetical protein CHLREDRAFT_187016 [Chlamydomonas reinhardtii]
 gi|158282694|gb|EDP08446.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 278

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 40  QRAQLEGWRARSAYKLLQ-----INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +  ++ G   R+A KL +     +   H  L      VD+G++PG WSQ  A      A 
Sbjct: 192 REKKMPGQLCRAAGKLREALITVLGSAH--LPPGLAAVDVGAAPGGWSQQLA-----AAG 244

Query: 95  NTRVVAIDILDMEP 108
              VV+ID  +++P
Sbjct: 245 ARLVVSIDPAELDP 258


>gi|270308584|ref|YP_003330642.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides sp. VS]
 gi|270154476|gb|ACZ62314.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides sp. VS]
          Length = 277

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 24/120 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           +++   ++DLGS  G    +A+   G+     +V+ +D+   M  I     F+  + ++ 
Sbjct: 72  IKAGETVLDLGSGGGFDCFLASPRVGAKG---KVIGVDMTPQMLSIAKRNAFQGGYTNV- 127

Query: 124 SWEFIRQAIGGNP------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             EFI+  I   P      DL++S+        +            A    AL +L  GG
Sbjct: 128 --EFIQGEIENLPLESDSIDLIISNCVINLSPDKP-----------AVFKEALRVLKPGG 174


>gi|149743533|ref|XP_001497025.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Equus caballus]
          Length = 469

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 22/137 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--VAIDILDMEP------ILGVKFFKF 117
           Q   +I+DL ++PG  +   A +         +  ++  +  ++       +  ++ F F
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCF 292

Query: 118 DFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS-LCE 163
           D       + ++   G  P           D   S M           +  + +   L  
Sbjct: 293 DGTKALKLDMVKNTEGEPPFLPESFDRILLDAPCSGMGQRPNMACSWTLKEVTSYQPLQR 352

Query: 164 AATFFALEMLNIGGDFL 180
                A+++L  GG  +
Sbjct: 353 KLFTVAVKLLKPGGVLV 369


>gi|124389428|gb|ABN10865.1| orf1ab polyprotein [Bat coronavirus HKU4-4]
          Length = 7129

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 131  AIGGNPDLVLSDMAYPTI----GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
             +G   DL++SDM  P         +   L  + LC     F    L +GG   +K  + 
Sbjct: 6946 HVGQQVDLLISDMYDPCTKAVGEVNQTKALFFVYLC----NFIKNNLALGGSVAIKITEH 7001

Query: 187  GTTNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              + D+  ++ +  +  V      AS   S E FL+   F
Sbjct: 7002 SWSADLYKIMGRFAYWTVFCTNANAS---SSEGFLIGINF 7038


>gi|124389408|gb|ABN10847.1| orf1ab polyprotein [Bat coronavirus HKU4-2]
 gi|124389418|gb|ABN10856.1| orf1ab polyprotein [Bat coronavirus HKU4-3]
          Length = 7119

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 131  AIGGNPDLVLSDMAYPTI----GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
             +G   DL++SDM  P         +   L  + LC     F    L +GG   +K  + 
Sbjct: 6936 HVGQQVDLLISDMYDPCTKAVGEVNQTKALFFVYLC----NFIKNNLALGGSVAIKITEH 6991

Query: 187  GTTNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              + D+  ++ +  +  V      AS   S E FL+   F
Sbjct: 6992 SWSADLYKIMGRFAYWTVFCTNANAS---SSEGFLIGINF 7028


>gi|126030113|ref|YP_001039952.1| orf1ab polyprotein [Bat coronavirus HKU4]
 gi|190360098|sp|P0C6W3|R1AB_BCHK4 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:
            Full=ORF1ab polyprotein; Contains: RecName:
            Full=Non-structural protein 1; Short=nsp1; AltName:
            Full=Leader protein; Contains: RecName:
            Full=Non-structural protein 2; Short=nsp2; AltName:
            Full=p65 homolog; Contains: RecName: Full=Non-structural
            protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName:
            Full=Papain-like proteinase; Short=PL-PRO; Contains:
            RecName: Full=Non-structural protein 4; Short=nsp4;
            Contains: RecName: Full=3C-like proteinase;
            Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains:
            RecName: Full=Non-structural protein 6; Short=nsp6;
            Contains: RecName: Full=Non-structural protein 7;
            Short=nsp7; Contains: RecName: Full=Non-structural
            protein 8; Short=nsp8; Contains: RecName:
            Full=Non-structural protein 9; Short=nsp9; Contains:
            RecName: Full=Non-structural protein 10; Short=nsp10;
            AltName: Full=Growth factor-like peptide; Short=GFL;
            Contains: RecName: Full=RNA-directed RNA polymerase;
            Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains:
            RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13;
            Contains: RecName: Full=Exoribonuclease; Short=ExoN;
            AltName: Full=nsp14; Contains: RecName:
            Full=Uridylate-specific endoribonuclease; AltName:
            Full=NendoU; AltName: Full=nsp15; Contains: RecName:
            Full=Putative 2'-O-methyl transferase; AltName:
            Full=nsp16
 gi|124389398|gb|ABN10838.1| orf1ab polyprotein [Bat coronavirus HKU4-1]
          Length = 7119

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 131  AIGGNPDLVLSDMAYPTI----GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
             +G   DL++SDM  P         +   L  + LC     F    L +GG   +K  + 
Sbjct: 6936 HVGQQVDLLISDMYDPCTKAVGEVNQTKALFFVYLC----NFIKNNLALGGSVAIKITEH 6991

Query: 187  GTTNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              + D+  ++ +  +  V      AS   S E FL+   F
Sbjct: 6992 SWSADLYKIMGRFAYWTVFCTNANAS---SSEGFLIGINF 7028


>gi|113882958|ref|YP_729202.1| ORF1 [Bat coronavirus (BtCoV/133/2005)]
 gi|190360094|sp|P0C6W1|R1AB_BC133 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:
            Full=ORF1ab polyprotein; Contains: RecName:
            Full=Non-structural protein 1; Short=nsp1; AltName:
            Full=Leader protein; Contains: RecName:
            Full=Non-structural protein 2; Short=nsp2; AltName:
            Full=p65 homolog; Contains: RecName: Full=Non-structural
            protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName:
            Full=Papain-like proteinase; Short=PL-PRO; Contains:
            RecName: Full=Non-structural protein 4; Short=nsp4;
            Contains: RecName: Full=3C-like proteinase;
            Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains:
            RecName: Full=Non-structural protein 6; Short=nsp6;
            Contains: RecName: Full=Non-structural protein 7;
            Short=nsp7; Contains: RecName: Full=Non-structural
            protein 8; Short=nsp8; Contains: RecName:
            Full=Non-structural protein 9; Short=nsp9; Contains:
            RecName: Full=Non-structural protein 10; Short=nsp10;
            AltName: Full=Growth factor-like peptide; Short=GFL;
            Contains: RecName: Full=RNA-directed RNA polymerase;
            Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains:
            RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13;
            Contains: RecName: Full=Exoribonuclease; Short=ExoN;
            AltName: Full=nsp14; Contains: RecName:
            Full=Uridylate-specific endoribonuclease; AltName:
            Full=NendoU; AltName: Full=nsp15; Contains: RecName:
            Full=Putative 2'-O-methyl transferase; AltName:
            Full=nsp16
 gi|109893915|gb|ABG47051.1| ORF1 [Bat coronavirus (BtCoV/133/2005)]
          Length = 7126

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 131  AIGGNPDLVLSDMAYPTI----GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
             +G   DL++SDM  P         +   L  + LC     F    L +GG   +K  + 
Sbjct: 6943 HVGQQVDLLISDMYDPCTKAVGEVNQTKALFFVYLC----NFIKNNLALGGSVAIKITEH 6998

Query: 187  GTTNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              + D+  ++ +  +  V      AS   S E FL+   F
Sbjct: 6999 SWSADLYKIMGRFAYWTVFCTNANAS---SSEGFLIGINF 7035


>gi|220935903|ref|YP_002514802.1| Cyclopropane-fatty-acyl-phospholipid synthase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997213|gb|ACL73815.1| Cyclopropane-fatty-acyl-phospholipid synthase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 400

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 23/133 (17%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---L 110
           KL  I  K   L+  +R++D+G   GS+ + AA   G       +        + +   L
Sbjct: 172 KLDMICRKLD-LKPGQRVLDIGCGWGSFMRFAAEHYGVACVGVTISKEQAAHGQKLCEGL 230

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            V+F   D+ +LD             D + S   +  +GH+                 A 
Sbjct: 231 PVEFRLMDYRELD----------EKFDHIASVGMFEHVGHKNHHTYFQ---------VAR 271

Query: 171 EMLNIGGDFLVKT 183
             L  GG FL+ T
Sbjct: 272 RCLKDGGLFLLHT 284


>gi|154304298|ref|XP_001552554.1| hypothetical protein BC1G_08419 [Botryotinia fuckeliana B05.10]
 gi|150854221|gb|EDN29413.1| hypothetical protein BC1G_08419 [Botryotinia fuckeliana B05.10]
          Length = 615

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +  +R++++    G WS +  +      +++ +   IDI  + P       + D  D  +
Sbjct: 291 RPPKRVLEIACGTGFWSVMCHKHFSHKGHSSIQFTGIDIAPLAP-------RMDADDDMN 343

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           W F++  +   P     +     +         T    ++     L +L  GG  
Sbjct: 344 WRFVQHDLRKTPLPFRDEEFSLIMVKDLSMAQSTKDNPQSLMDEYLRILKPGGTL 398


>gi|183219509|ref|YP_001837505.1| putative ribosomal RNA methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189909651|ref|YP_001961206.1| rRNA methylase/hemolysin-tylA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|106879730|emb|CAJ90434.1| putative ribosomal RNA methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167774327|gb|ABZ92628.1| rRNA methylase/Hemolysin-tylA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777931|gb|ABZ96229.1| Putative ribosomal RNA methyltransferase, putative hemolysine
           TlyA-like protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 257

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNA 93
            D    + +++ + +R AYKLL   ++ + +Q   +  +DLG+S G + QV         
Sbjct: 50  KDKVRTKEKIKTYVSRGAYKLLGAFDRWKTIQVEGKTCIDLGASTGGFCQVLLE-----K 104

Query: 94  NNTRVVAIDI 103
              RV+A+D+
Sbjct: 105 GAIRVIAVDV 114


>gi|256821949|ref|YP_003145912.1| putative RNA 2'-O-ribose methyltransferase [Kangiella koreensis DSM
           16069]
 gi|256795488|gb|ACV26144.1| putative RNA 2'-O-ribose methyltransferase [Kangiella koreensis DSM
           16069]
          Length = 358

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 47  WRARSAYKLLQ-IN------EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL + I       ++  +L+     VDLG++PG W+    +      +  +V 
Sbjct: 182 APSRSTLKLEEAIQTLMSGKQQKAVLRLGNTAVDLGAAPGGWTYQLVQ------HGLQVT 235

Query: 100 AIDILDME 107
           AID   M+
Sbjct: 236 AIDNGPMD 243


>gi|254386320|ref|ZP_05001628.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194345173|gb|EDX26139.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 515

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 22/137 (16%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIR 129
           +VDL +  G W+ V A   G++    R+VA+D  L M  +L            D    + 
Sbjct: 356 VVDLAAGAGRWTAVIAEAVGAD----RLVAVDSSLPMLNVL-----------RDRLPEVP 400

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
             + G  DL  +D +   +              EAA      +L  GG F + TF+    
Sbjct: 401 SVLAGAADLPFADASVGAVVCWNALQAFYHE-AEAAITEVGRVLRPGGTFTLMTFRRSED 459

Query: 190 NDILCLLKKHFQKVIHV 206
                   ++FQ     
Sbjct: 460 PVY-----RYFQSAHRF 471


>gi|29653356|ref|NP_819014.1| Nonstructural protein P123 [Aura virus]
          Length = 1888

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 135  NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQGGTTNDI 192
              DLV+ +M  P   H          L       AL  L  GG   +K   F    + D+
Sbjct: 1224 RYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSALNCLKPGGTLALKAYGFADSNSEDV 1283

Query: 193  LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +  L + F +   V+P +    + EMF +   FR+
Sbjct: 1284 VLSLARKFVRASAVRP-SCTQFNTEMFFV---FRQ 1314


>gi|21218489|ref|NP_632023.1| Nonstructural polyprotein [Aura virus]
 gi|75569237|sp|Q86924|POLN_AURAV RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=P123'; Contains: RecName:
            Full=mRNA-capping enzyme nsP1; AltName:
            Full=Non-structural protein 1; Contains: RecName:
            Full=Protease nsP2; AltName: Full=Non-structural protein
            2; Short=nsP2; Contains: RecName: Full=Non-structural
            protein 3; Short=nsP3; Contains: RecName:
            Full=Non-structural protein 3'; Short=nsP3'; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|4240568|gb|AAD13622.1| polyprotein 1 [Aura virus]
          Length = 2498

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 135  NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQGGTTNDI 192
              DLV+ +M  P   H          L       AL  L  GG   +K   F    + D+
Sbjct: 1224 RYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSALNCLKPGGTLALKAYGFADSNSEDV 1283

Query: 193  LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            +  L + F +   V+P +    + EMF +   FR+
Sbjct: 1284 VLSLARKFVRASAVRP-SCTQFNTEMFFV---FRQ 1314


>gi|29653353|ref|NP_819011.1| Nonstructural protein nsP2 [Aura virus]
          Length = 806

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT--FQGGTTNDI 192
             DLV+ +M  P   H          L       AL  L  GG   +K   F    + D+
Sbjct: 685 RYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSALNCLKPGGTLALKAYGFADSNSEDV 744

Query: 193 LCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
           +  L + F +   V+P +    + EMF +   FR+
Sbjct: 745 VLSLARKFVRASAVRP-SCTQFNTEMFFV---FRQ 775


>gi|240850083|ref|YP_002971476.1| hemolysin A [Bartonella grahamii as4aup]
 gi|240267206|gb|ACS50794.1| hemolysin A [Bartonella grahamii as4aup]
          Length = 247

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 35/155 (22%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL+   +   I+      +D+G+S G ++QV      ++     V+A+D  
Sbjct: 59  QNYVSRAALKLIAALDAFPIITDKVTAIDVGASTGGFTQVLLERGSAH-----VIAVD-- 111

Query: 105 DMEPILGVKFFKFD--------FLDLD---SWEFIRQAIGGN-PDLVLSDMA-------- 144
                  V   +FD           L+     +F  + +GG   DL++SD++        
Sbjct: 112 -------VGHHQFDKRLLGNSAITLLEGLNVRDFQHKHLGGREIDLIVSDVSFISLKLAL 164

Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            P +   K      + L +       +  + GG  
Sbjct: 165 PPVLSLAKKGAQAVL-LVKPQFEVGRKHFSKGGIL 198


>gi|310828894|ref|YP_003961251.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
 gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
          Length = 441

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF 114
           +   R++D+ ++PG  +   ++I  +      ++A DI D              I  ++ 
Sbjct: 256 EKTDRVLDMCAAPGGKTTHLSQIMENEGT---IIARDIFDSRLKLIEETAARLGICNIET 312

Query: 115 FKFD--FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC---EAATFFA 169
            K D      +  E   + +   P   L  +         I       L          A
Sbjct: 313 EKTDGCIFRPEDREAFDRILLDAPCSGLGIIRRKPEIRYTITKKARKELVRIQRQLLDHA 372

Query: 170 LEMLNIGGDFL 180
           ++ L  GG  +
Sbjct: 373 VQYLKPGGTLV 383


>gi|242764692|ref|XP_002340826.1| TAM domain methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724022|gb|EED23439.1| TAM domain methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 269

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 59  NEKHQI--LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVK 113
           ++K     L+  +RI+D+G+  G W    A +         +   D+  ++P      V 
Sbjct: 11  DDKLHFAPLRDPKRILDIGTGSGIWPIEMASLFPE----ASITGTDLSPVQPTEVPPNVH 66

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR-TMSLCEAATFFALEM 172
           F   D  +   WE                       + ++ ++  +    +     A+ +
Sbjct: 67  FLVEDATEEWLWE------------------PNHFDYIRLSNMTGSFPSVKDILRKAMRV 108

Query: 173 LNIGGDF 179
           L  GG  
Sbjct: 109 LKPGGWL 115


>gi|76446004|gb|ABA42875.1| polyprotein [Citrus leprosis virus C]
          Length = 2512

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 168  FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM---FLLAKG 224
             A   L+ GG  + + F+     + L +L   F+ +   KP A    S  +   +LL  G
Sbjct: 991  LAWSALSSGGTAVFRVFRPEEVPESLNMLTTLFEDIRFFKPKA---ISTSIVDGYLLCSG 1047

Query: 225  FR 226
             R
Sbjct: 1048 KR 1049


>gi|109255261|ref|YP_654538.1| replicase [Citrus leprosis virus C]
 gi|123863050|sp|Q1KZ59|POLG_CILVC RecName: Full=RNA replication protein; Includes: RecName:
            Full=Methyltransferase; Includes: RecName: Full=Helicase;
            Includes: RecName: Full=RNA-directed RNA polymerase
 gi|85720661|gb|ABC75821.1| replicase [Citrus leprosis virus C]
          Length = 2512

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 168  FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM---FLLAKG 224
             A   L+ GG  + + F+     + L +L   F+ +   KP A    S  +   +LL  G
Sbjct: 991  LAWSALSSGGTAVFRVFRPEEVPESLNMLTTLFEDIRFFKPKA---ISTSIVDGYLLCSG 1047

Query: 225  FR 226
             R
Sbjct: 1048 KR 1049


>gi|89902754|ref|YP_525225.1| putative methyltransferase [Rhodoferax ferrireducens T118]
 gi|89347491|gb|ABD71694.1| putative methyltransferase [Rhodoferax ferrireducens T118]
          Length = 289

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 21/129 (16%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-------VAIDILDMEPILGVKFF 115
            +LQ   R++DL   P +     AR+                  A + L    I  V+  
Sbjct: 61  SVLQPGDRVLDLACGPANQLLQIARLNPQVHFVGLDASSTMLQCAQNTLAQAHIHNVELV 120

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + D   L   E        + D V+  M+   +           +LC         +L  
Sbjct: 121 QGDMTRLVRQE------DASMDGVICTMSLHHLPDH-------AALCTTLREV-RRVLKP 166

Query: 176 GGDFLVKTF 184
            G F +  F
Sbjct: 167 QGRFYLTDF 175


>gi|256810005|ref|YP_003127374.1| THUMP domain protein [Methanocaldococcus fervens AG86]
 gi|256793205|gb|ACV23874.1| THUMP domain protein [Methanocaldococcus fervens AG86]
          Length = 349

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 50  RSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSW----SQVAARITGSNANNTRVVAIDIL 104
           RS  K+ ++ EK     ++   +VD+GS+PG W    S+ A ++   +    +V A +I+
Sbjct: 188 RSERKMQELMEKFPFIFENLNCVVDIGSAPGGWAKMLSKKAKKVYAIDTGELKVKAKNII 247

Query: 105 DMEPILGVKFFKFDFLDL 122
            ++       F+ D  + 
Sbjct: 248 HIKKRAEDVDFEKDIDEE 265


>gi|15604410|ref|NP_220927.1| hemolysin (tlyA) [Rickettsia prowazekii str. Madrid E]
 gi|3861104|emb|CAA15004.1| HEMOLYSIN (tlyA) [Rickettsia prowazekii]
 gi|292572174|gb|ADE30089.1| Hemolysin A [Rickettsia prowazekii Rp22]
          Length = 251

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 16  KVKNRSCQG-SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDL 74
           KV N+  +   S   +NRH  D  V+  Q   + +R A KL+   +  +I   N   +D+
Sbjct: 30  KVHNKHEKLIKSGIKVNRHDPDIKVKLPQ-HNYVSRGALKLITALDYFKIDPQNLVCIDI 88

Query: 75  GSSPGSWSQVAARITGS 91
           GSS G +++V       
Sbjct: 89  GSSTGGFTEVLFERKAE 105


>gi|326315511|ref|YP_004233183.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372347|gb|ADX44616.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 428

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 11/108 (10%)

Query: 29  WL--NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           WL   R  +  Y + A +   RA+ A KL  I  K ++     R +D+G+  G     AA
Sbjct: 131 WLDPRRVYSCAYYRDADMPLARAQEA-KLDHICRKLRLA-PGDRFLDIGAGWGGLLLWAA 188

Query: 87  RITGSNANNTRVVAIDILDMEPIL-------GVKFFKFDFLDLDSWEF 127
              G       +       +  ++        V+    D+ DL     
Sbjct: 189 EHYGVEGTGITLSRNQHAHVARLIEEKGLSGRVRMLLCDYRDLPRTAQ 236


>gi|157962799|ref|YP_001502833.1| putative RNA 2'-O-ribose methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|189040355|sp|A8H6W1|RLMM_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|157847799|gb|ABV88298.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
          Length = 360

 Score = 40.3 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         E+   L S  + VDLG+ PG W+    R          V 
Sbjct: 183 APSRSTLKLDEAFIHFIPKEEQETRLSSGMKAVDLGACPGGWTYQLVRR------GMFVA 236

Query: 100 AIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAYPTIGHR 151
           A+D   M+        VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDQGLMDTGQVKHYQADGFRFEPPRKNITWLVCDMIEKPSRVAELIEAWAINGW 296

Query: 152 KIDHLRTMSLCEAA--------TFFALEMLNIGG 177
             + +  + L   A             E+L   G
Sbjct: 297 FKESIFNLKLPMKARYKEVSTILATMEEILKENG 330


>gi|261248116|emb|CBG25951.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 366

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 17/85 (20%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  SQVAARITGSNANNTRVVAIDILDM 106
           +    +          V ++D   M
Sbjct: 226 TYQLVKRNIW------VYSVDNGPM 244


>gi|226944114|ref|YP_002799187.1| putative RNA 2'-O-ribose methyltransferase [Azotobacter vinelandii
           DJ]
 gi|259494573|sp|C1DEM7|RLMM_AZOVD RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226719041|gb|ACO78212.1| methyltransferase-like protein [Azotobacter vinelandii DJ]
          Length = 353

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 23/111 (20%)

Query: 47  WRARSAYKLLQINEKH------QI-LQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +   +        + L      VDLG++PG W+ Q+  R     A +   
Sbjct: 179 APSRSTLKLEEAWHQFIPREAWDLRLAPGMSAVDLGAAPGGWTWQLVNRHMKVTAVDNGP 238

Query: 99  VAIDILD-------------MEPILGVKFFKFDFLDL--DSWEFIRQAIGG 134
           +A  ++D               P   V +   D ++    +   I   +G 
Sbjct: 239 MAQSLMDSGLVEHVRADGFVFRPRRPVDWMVCDIVEKPARTAALIETWLGE 289


>gi|328495127|gb|AEB21181.1| nonstructural polyprotein [Semliki forest virus]
          Length = 1812

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG+ L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGNLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|284161758|ref|YP_003400381.1| RNA-binding S4 domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011755|gb|ADB57708.1| RNA-binding S4 domain protein [Archaeoglobus profundus DSM 5631]
          Length = 209

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 28/155 (18%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVA 100
           + +G+     +KL +++E   +++ +  ++DLGSS G +   A+           +R   
Sbjct: 55  KPKGY-----WKLKELDEMWNLIKKDDIVLDLGSSAGGFLLYASEKAERVYGIEYSREFE 109

Query: 101 IDILDME-PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
             + ++E     VK F  D    D  E          D++LSD+        K       
Sbjct: 110 DKLKEIERERDNVKIFIADAFTFDLSEL------EPVDVILSDLTLKPSYAWK------- 156

Query: 160 SLCEAATFFALEMLNIGGD--FLVKTFQGGTTNDI 192
                AT   + +L   G   F+ KT       D 
Sbjct: 157 -----ATKRFIPLLKPQGRVLFVAKTGVYNEEIDF 186


>gi|312110955|ref|YP_003989271.1| methyltransferase type 11 [Geobacillus sp. Y4.1MC1]
 gi|311216056|gb|ADP74660.1| Methyltransferase type 11 [Geobacillus sp. Y4.1MC1]
          Length = 266

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+    ++DLG   G    +AAR  G      RV+ +D+   M         K  F + +
Sbjct: 77  LKPGEVVLDLGCGAGFDCFLAARQVGETG---RVIGVDMTPEMISKARNNAAKGGFTNTE 133

Query: 124 SWEFIRQAI---GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                 + +    G+ D+++S+        +                 A  +L  GG  +
Sbjct: 134 FRLGEIEYLPVADGSVDVIISNCVINLSPDKP-----------QVFKEAYRVLKPGGRLV 182

Query: 181 V 181
           +
Sbjct: 183 I 183


>gi|162453901|ref|YP_001616268.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sorangium
           cellulosum 'So ce 56']
 gi|161164483|emb|CAN95788.1| Ubiquinone/menaquinone biosynthesis methyltransferase [Sorangium
           cellulosum 'So ce 56']
          Length = 267

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R++D+G+  G  +   A I G   +   V AID L           + D     + 
Sbjct: 38  RRGQRVLDVGAGTGRLAAHVAEIVGPEGS---VTAIDPLP---------LRVDIARQKAR 85

Query: 126 EFIRQAIGGNPDL-VLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
             +  A+G   DL   +  ++  +    + H       E A   A  +L  GG  
Sbjct: 86  ANLATAVGRAEDLSAFASKSFDVVYLNSVLHWLNEPQKERAIAEAARVLKPGGKL 140


>gi|144900262|emb|CAM77126.1| hypothetical SAM-dependent methyltransferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 313

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 17/77 (22%)

Query: 48  RARSAYKLLQINEKHQIL----QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            +R+  KL    +   +L    +     +DLG+ PG W+ V A +         V+A+D 
Sbjct: 157 PSRAYLKLW---DAFTVLGFGPKPGETCLDLGACPGGWTWVLASLGAH------VIAVDK 207

Query: 104 LDMEP----ILGVKFFK 116
             ++P    + GV   +
Sbjct: 208 APLDPKVAAMPGVSIRQ 224


>gi|291086545|ref|ZP_06356111.2| cyclopropane-fatty-acyl-phospholipid synthase [Citrobacter youngae
           ATCC 29220]
 gi|291067741|gb|EFE05850.1| cyclopropane-fatty-acyl-phospholipid synthase [Citrobacter youngae
           ATCC 29220]
          Length = 384

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 44/201 (21%)

Query: 5   PGSSSRRGLTQKVKNRSCQGSSRDWL--NRHI---NDPYVQRAQLEGWRARSAY------ 53
           PG+          +  + Q  SR W+    H    ND +          +  AY      
Sbjct: 91  PGNLKDILRIASARLFNLQSRSRAWIVGKEHYDIGNDLFALMLDPHMQYS-CAYWKDATT 149

Query: 54  -------KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
                  KL  I EK Q L+   R++D+G   G  ++ AAR  G  A     ++ +   M
Sbjct: 150 LDDAQNAKLKMICEKLQ-LKPGMRLLDIGCGWGGLAEYAARHYGV-AVEGVTISQEQQKM 207

Query: 107 EPIL----GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
                    V     D+ DLD              +V   M           +   +  C
Sbjct: 208 AQQRCEGLDVNILLQDYRDLD---------KHYDRIVSVGMFEHVGPKNYDTYFSIVDRC 258

Query: 163 EAATFFALEMLNIGGDFLVKT 183
                     L   G FL+ T
Sbjct: 259 ----------LKPDGLFLLHT 269


>gi|288931958|ref|YP_003436018.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
 gi|288894206|gb|ADC65743.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
          Length = 446

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 21/144 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPIL---GVKFFKF 117
           +    +VDL ++PG  +   A +  +      + A DI +     ME ++   G++  K 
Sbjct: 253 KPGEVVVDLCAAPGGKTLHMAELMKNRGV---IHAFDIDELRLKRMEELIERCGIRIVKI 309

Query: 118 DFLDL-DSWEFIRQAIGGNPDLVLSD-----MAYPTIGHRKIDHLRTMSLCEAA---TFF 168
              D   + + + +++     L         +        +I   +   L E        
Sbjct: 310 YKKDARKATKILGESVADKVMLDAPCTSDGTLMKNPELRWRIREEKIEELAELQYELLNV 369

Query: 169 ALEMLNIGG-DFLVKTFQGGTTND 191
           A+++L  GG             N+
Sbjct: 370 AVDLLKPGGRVLYCTCSMFKEENE 393


>gi|302891385|ref|XP_003044575.1| hypothetical protein NECHADRAFT_45900 [Nectria haematococca mpVI
           77-13-4]
 gi|256725498|gb|EEU38862.1| hypothetical protein NECHADRAFT_45900 [Nectria haematococca mpVI
           77-13-4]
          Length = 298

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           +S +RI+DLG+  G W+  AA    S      V+  D+  ++P        F   DF D 
Sbjct: 62  KSPQRILDLGTGTGIWAMDAADEHQSAE----VIGTDLSPIQPQWTPPNCVFEVDDFEDD 117

Query: 123 DSWEFIRQAIGGN 135
             ++     I G 
Sbjct: 118 WVYKKQFDFIHGR 130


>gi|229021278|ref|ZP_04177913.1| Zinc-type alcohol dehydrogenase [Bacillus cereus AH1273]
 gi|228740011|gb|EEL90373.1| Zinc-type alcohol dehydrogenase [Bacillus cereus AH1273]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVKFFK 116
           H  ++    +V LG  P     + A+         RV+A+D L       + +  V+   
Sbjct: 201 HGGVKKGDTVVILGCGPIG---LMAQKFAWMHGAKRVIAVDRLPYRLQKAKQMNNVETIN 257

Query: 117 F-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL---CEAATFFALEM 172
           F +F D  +  +IR+   G  D+V+  +             ++M +     +    A + 
Sbjct: 258 FEEFTD--TGLYIRELTNGGADVVIDCVGMDGKKTMLESIEQSMMMIGGTLSPLKIASDA 315

Query: 173 LNIGGDFLVKTFQGGTTNDI 192
           +   G   +    G T N  
Sbjct: 316 VRKCGTIQITGVYGSTYNQF 335


>gi|229027270|ref|ZP_04183537.1| Zinc-type alcohol dehydrogenase [Bacillus cereus AH1272]
 gi|228734048|gb|EEL84775.1| Zinc-type alcohol dehydrogenase [Bacillus cereus AH1272]
          Length = 382

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----EPILGVKFFK 116
           H  ++    +V LG  P     + A+         RV+A+D L       + +  V+   
Sbjct: 177 HGGVKKGDTVVILGCGPIG---LMAQKFAWMHGAKRVIAVDRLPYRLQKAKQMNNVETIN 233

Query: 117 F-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL---CEAATFFALEM 172
           F +F D  +  +IR+   G  D+V+  +             ++M +     +    A + 
Sbjct: 234 FEEFTD--TGLYIRELTNGGADVVIDCVGMDGKKTMLESIEQSMMMIGGTLSPLKIASDA 291

Query: 173 LNIGGDFLVKTFQGGTTNDI 192
           +   G   +    G T N  
Sbjct: 292 VRKCGTIQITGVYGSTYNQF 311


>gi|90420129|ref|ZP_01228037.1| hemolysin A [Aurantimonas manganoxydans SI85-9A1]
 gi|90335463|gb|EAS49213.1| hemolysin A [Aurantimonas manganoxydans SI85-9A1]
          Length = 254

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 22/140 (15%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILD 105
           + +R+  KL    ++  I    R  VDLG+S G +++   R   ++  +  V        
Sbjct: 68  YVSRAGLKLEAALDQFAIPVEGRMAVDLGASTGGFTEALLRRGVAHVVSIDVGHGQMHPR 127

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           +     V   +     L++ +  R+ IGG   DL+++D+++ T                 
Sbjct: 128 IAADPRVTAIEG----LNARDLTREDIGGRAFDLLVADVSFIT--------------LRL 169

Query: 165 ATFFALEMLNIG--GDFLVK 182
           A   ALE+   G  G FLVK
Sbjct: 170 ALPPALELAEPGTTGVFLVK 189


>gi|317055516|ref|YP_004103983.1| type 11 methyltransferase [Ruminococcus albus 7]
 gi|315447785|gb|ADU21349.1| Methyltransferase type 11 [Ruminococcus albus 7]
          Length = 261

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 9/151 (5%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++  L      +D+G   G+ +   A+         R+V ID    E     K    +  
Sbjct: 87  EYFTLPEGGIGLDVGCGSGALTIACAKRNPQ----GRMVGIDRWGKEYASFSKHLCEENS 142

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF- 179
           D +  +      G    L   D  +  +    + H  +    +      L +L  GG F 
Sbjct: 143 DAEGVQNTEFHQGDACKLDYPDEYFDAVTSNYVYHNISGVNKQELLRETLRVLKKGGTFA 202

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQKVIHV 206
               + K   G     I  L  + + KV  +
Sbjct: 203 IHDIMTKARYGNMQQFISELYDEGYDKVTLI 233


>gi|253559849|gb|ACT32616.1| L protein [Nipah virus]
          Length = 2244

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              +LDS+E  I +  G +  LV SDM       +    ++H   +S        A+ ++ 
Sbjct: 1916 IGNLDSYEYIINRTAGRSIGLVHSDMESGIDKNVEEILVEHSHLIS-------IAINVMM 1968

Query: 175  IGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G  + K         + +  + + +F  V+   PV S  +S E++LL  
Sbjct: 1969 EDGLLVSKIAYTPGFPISRLFNMYRSYFGLVLVCFPVYSNPDSTEVYLLCL 2019


>gi|239917918|ref|YP_002957476.1| hemolysin A [Micrococcus luteus NCTC 2665]
 gi|239839125|gb|ACS30922.1| hemolysin A [Micrococcus luteus NCTC 2665]
          Length = 280

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 47  WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL- 104
           + +R+A+KL+   E    +  + RR +D G+S G ++QV     G+       V  D L 
Sbjct: 61  YVSRAAHKLVSALEAFPDVGVAGRRALDAGASTGGFTQVLLER-GAERVAAVDVGHDQLA 119

Query: 105 -DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
             +     V   +     L+  +   + I G  DLV+SD++             ++ L  
Sbjct: 120 PPVRADPRVLVREG----LNVRDLTAEDIDGPVDLVVSDLS-----------FISLRLVL 164

Query: 164 AATFFALEMLNIGGDFLVKT 183
           A       +   G + L+  
Sbjct: 165 APL---AGVCRPGAELLLMV 181


>gi|170016993|ref|YP_001727912.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc citreum KM20]
 gi|169803850|gb|ACA82468.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc citreum KM20]
          Length = 479

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 32/172 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNA---------NNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  S   A                N  ++++ +I  M         +
Sbjct: 95  KPGERVLDLAAAPGGKSTHLAAFMQQQGLLWSNEIFLNRAKILSENIERM-------GVQ 147

Query: 117 FDFLDLDSWEFIRQAIGGNPDLV-----LSDMAYPTIGHRKIDH------LRTMSLCEAA 165
              +   +   +   +    D +      S           I             L    
Sbjct: 148 NSIVSSQTPAELSAKLPQYFDKILLDAPCSGEGMFHKNEAAIQQWHKDFPQELADLQRDI 207

Query: 166 TFFALEMLNIGGDFL--VKTFQGGTTNDILCLL---KKHFQKVIHVKPVASR 212
              A++ML  GG  +    TF       ++  L      F   +  KPV++R
Sbjct: 208 LSEAVKMLKPGGQIVYSTCTFAPEEDEQMIAWLLSTYPEFSLEVINKPVSAR 259


>gi|66271899|gb|AAY43917.1| L protein [Nipah virus]
          Length = 2244

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              +LDS+E  I +  G +  LV SDM       +    ++H   +S        A+ ++ 
Sbjct: 1916 IGNLDSYEYIINRTAGRSIGLVHSDMESGIDKNVEEILVEHSHLIS-------IAINVMM 1968

Query: 175  IGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G  + K         + +  + + +F  V+   PV S  +S E++LL  
Sbjct: 1969 EDGLLVSKIAYTPGFPISRLFNMYRSYFGLVLVCFPVYSNPDSTEVYLLCL 2019


>gi|57282814|emb|CAF25498.1| polymerase [Nipah virus]
 gi|307557089|gb|ADN51997.1| polymerase [Nipah virus]
 gi|313476294|emb|CBM41035.1| polymerase [Nipah virus]
          Length = 2244

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              +LDS+E  I +  G +  LV SDM       +    ++H   +S        A+ ++ 
Sbjct: 1916 IGNLDSYEYIINRTAGRSIGLVHSDMESGIDKNVEEILVEHSHLIS-------IAINVMM 1968

Query: 175  IGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G  + K         + +  + + +F  V+   PV S  +S E++LL  
Sbjct: 1969 EDGLLVSKIAYTPGFPISRLFNMYRSYFGLVLVCFPVYSNPDSTEVYLLCL 2019


>gi|15487370|gb|AAK50546.1| RNA polymerase [Nipah virus]
 gi|40644704|emb|CAD92352.1| polymerase [Nipah virus]
 gi|40644718|emb|CAD92364.1| polymerase [Nipah virus]
          Length = 2244

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              +LDS+E  I +  G +  LV SDM       +    ++H   +S        A+ ++ 
Sbjct: 1916 IGNLDSYEYIINRTAGRSIGLVHSDMESGIDKNVEEILVEHSHLIS-------IAINVMM 1968

Query: 175  IGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G  + K         + +  + + +F  V+   PV S  +S E++LL  
Sbjct: 1969 EDGLLVSKIAYTPGFPISRLFNMYRSYFGLVLVCFPVYSNPDSTEVYLLCL 2019


>gi|13559815|ref|NP_112028.1| polymerase [Nipah virus]
 gi|81966535|sp|Q997F0|L_NIPAV RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|13518010|gb|AAK29089.1| polymerase [Nipah virus]
 gi|15487380|gb|AAK50555.1| RNA polymerase [Nipah virus]
 gi|40644711|emb|CAD92358.1| polymerase [Nipah virus]
          Length = 2244

 Score = 40.3 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 119  FLDLDSWE-FIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              +LDS+E  I +  G +  LV SDM       +    ++H   +S        A+ ++ 
Sbjct: 1916 IGNLDSYEYIINRTAGRSIGLVHSDMESGIDKNVEEILVEHSHLIS-------IAINVMM 1968

Query: 175  IGGDFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              G  + K         + +  + + +F  V+   PV S  +S E++LL  
Sbjct: 1969 EDGLLVSKIAYTPGFPISRLFNMYRSYFGLVLVCFPVYSNPDSTEVYLLCL 2019


>gi|255941860|ref|XP_002561699.1| Pc16g14010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|188482472|gb|ACD50375.1| secondary metabolism regulator LaeA [Penicillium chrysogenum]
 gi|211586322|emb|CAP94071.1| Pc16g14010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 427

 Score = 40.3 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 29/120 (24%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-KFDF----- 119
               RI+DLG   G WS   A      +    V    I          F+  FDF     
Sbjct: 187 PPGSRILDLGCGTGIWSIEVANKF-PGSFVVGVDLAPIQPTNTPKNCDFYAPFDFEAPWT 245

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +  DSW+ I   +G         +A     +R++                 + L  GG F
Sbjct: 246 MGEDSWDIIHMQMG------CGSVASWPSLYRRV----------------FQHLKPGGWF 283


>gi|57233796|ref|YP_182128.1| arsenite S-adenosylmethyltransferase [Dehalococcoides ethenogenes
           195]
 gi|57224244|gb|AAW39301.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides ethenogenes
           195]
          Length = 280

 Score = 40.3 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 24/120 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           ++    ++DLGS  G    +A+   G+     +V+ +D+   M  I     F+  + ++ 
Sbjct: 72  IKEGETVLDLGSGGGFDCFLASPRVGAKG---KVIGVDMTPQMLSIAKRNAFQGGYTNV- 127

Query: 124 SWEFIRQAIGGNP------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             EFI+  I   P      DL++S+        +            A    AL +L  GG
Sbjct: 128 --EFIQGEIENLPLESDSIDLIISNCVINLSPDKP-----------AVFKEALRVLKPGG 174


>gi|166199440|sp|A1WXL3|RLMM_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|121589845|gb|ABM62425.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 339

 Score = 40.3 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQ------SNRRIVDLGSSPGSWSQVAARITGSNA 93
           +        +RS  KL +    H+++            VDLG++PG W+ +         
Sbjct: 165 RLRMPRNAPSRSVLKLEE--ALHRLVPENERPYPGEHAVDLGAAPGGWTWLLRER----- 217

Query: 94  NNTRVVAIDILDMEP----ILGVKFFKFD 118
               V AID   + P      GV+  + D
Sbjct: 218 -GLTVTAIDNGPLAPALADDPGVEHQRTD 245


>gi|302538112|ref|ZP_07290454.1| methyltransferase [Streptomyces sp. C]
 gi|302447007|gb|EFL18823.1| methyltransferase [Streptomyces sp. C]
          Length = 248

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 32/136 (23%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILG 111
            +++   R +DLG  PG  +   A +         V A+D+                  G
Sbjct: 63  GLIRPG-RALDLGCGPGRNALHLASLGFE------VDAVDLSPTAVAWAEERARETGATG 115

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
           V+F + D   L + E     + G  DLV     +  +      H R   L          
Sbjct: 116 VRFHRGDAFRLTTAE-----LAGPYDLVYDSGCFHHLP----PHRRVSYLALL-----DR 161

Query: 172 MLNIGGDFLVKTFQGG 187
           +L  GG F +  F  G
Sbjct: 162 VLAPGGHFALTCFASG 177


>gi|291087690|ref|ZP_06572059.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
 gi|291074339|gb|EFE11703.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
          Length = 565

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 25/134 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PILGVKFFKF 117
           +   R++D+ ++PG     +  +         + + DI +           + G+     
Sbjct: 203 KPGDRVLDICAAPGG---KSTELGARLGGEGLLFSNDISNSRAKALLKNLEMAGIPNIC- 258

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDM----------AYPTI-GHRKIDHLRTMSLCEAAT 166
             +  ++ E + + +    D +L D               I  +R+      + L  A  
Sbjct: 259 --VSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPLQRAIM 316

Query: 167 FFALEMLNIGGDFL 180
             A++ML  GG  L
Sbjct: 317 EEAVKMLRPGGYLL 330


>gi|291402236|ref|XP_002717453.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Oryctolagus
           cuniculus]
          Length = 469

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 22/137 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--VAIDILDMEP------ILGVKFFKF 117
           Q   +I+DL ++PG  +   A +         +  ++  +  ++       +  ++ F F
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKISNKVEKIKQNALLLGLNSIRAFCF 292

Query: 118 DFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS-LCE 163
           D       +  +   G  P           D   S M           +  + +   L  
Sbjct: 293 DGTKALKLDMSQDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWTLKEVTSYQPLQR 352

Query: 164 AATFFALEMLNIGGDFL 180
                A+++L  GG  +
Sbjct: 353 KLFTVAVQLLKPGGVLV 369


>gi|269468553|gb|EEZ80202.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [uncultured SUP05 cluster bacterium]
          Length = 246

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 23/148 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK------FFKFDF 119
           ++  +++D+    G    +A           +V+  DI       G K      FF  DF
Sbjct: 58  KNGDKVLDIAGGTG---DLAIEFRKKVGAEGQVILSDINASMLDEGRKNLTNKGFFGVDF 114

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           + L++     +A     D V        +  +             A      +L  GG  
Sbjct: 115 IQLNAQYLPFEA--NTFDCVSIAFGLRNVTDKD-----------QALKEMCRVLKPGGCL 161

Query: 180 LVKTFQGGTTNDILCLLKKHFQKVIHVK 207
           L+  F   T +++L      +   +  K
Sbjct: 162 LILEF-SKTDSELLKKFYDFYSFTVMPK 188


>gi|215274031|gb|ACJ64914.1| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIRKFQ-WEPRGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            N+     +     +       K      L          A+       +      +    
Sbjct: 2560 NSVTGLTLGGASRENPLPFKTKGHNLAVLKAGVD---VYALEPRDCNTIVCDIGESDPRP 2616

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKP 208
            +++  RT            + L  N G  F  K         +    + +H      V+ 
Sbjct: 2617 EVEKTRT----LKVLTMLEKWLIHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHDGKLVRL 2672

Query: 209  VASRAESVEMFLL 221
              SR  + EM+ +
Sbjct: 2673 SLSRNSTAEMYYV 2685


>gi|167624983|ref|YP_001675277.1| putative RNA 2'-O-ribose methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|189040354|sp|B0TPH1|RLMM_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|167355005|gb|ABZ77618.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4]
          Length = 360

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 29/154 (18%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         E+   L S  + VDLG+ PG W+    R          V 
Sbjct: 183 APSRSTLKLDEAFIHFIPKEEQETRLSSGMKAVDLGACPGGWTYQLVRR------GMFVA 236

Query: 100 AIDILDME----PILGVKFFKFDFLDLDSWEFIRQAIG----GNPDLVLSDMAYPTIGHR 151
           A+D   M+        VK ++ D    +        +       P  V   +    I   
Sbjct: 237 AVDNGPMDQGLMDTGQVKHYQADGFRFEPPRKNITWLVCDMIEKPSRVAELIEAWAINGW 296

Query: 152 KIDHLRTMSLCEAA--------TFFALEMLNIGG 177
             + +  + L   A             E+L   G
Sbjct: 297 FKESIFNLKLPMKARYKEVSTILATMEEILKENG 330


>gi|317124694|ref|YP_004098806.1| hemolysin A [Intrasporangium calvum DSM 43043]
 gi|315588782|gb|ADU48079.1| hemolysin A [Intrasporangium calvum DSM 43043]
          Length = 267

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           W +R+AYKLL+  E   +  + RR +D+G+S G ++QV            RV A+D+
Sbjct: 60  WVSRAAYKLLRALELWPVDVAGRRCLDVGASTGGFTQVLLE-----HGAARVTALDV 111


>gi|256599190|gb|ACV04604.1| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 15/193 (7%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIRKFQ-WEPRGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            N+     +     +       K      L          A+       +      +    
Sbjct: 2560 NSVTGLTLGGASRENPVPFKTKGHNLAVLKAGVD---VYALEPRDCNTIVCDIGESDPRP 2616

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKP 208
            +++  RT            + L  N G  F  K         +    + +H      V+ 
Sbjct: 2617 EVEKTRT----LKVLTMLEKWLIHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHDGKLVRL 2672

Query: 209  VASRAESVEMFLL 221
              SR  + EM+ +
Sbjct: 2673 SLSRNSTAEMYYV 2685


>gi|256403028|dbj|BAH97932.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHALKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|229269868|ref|YP_001003227.2| putative RNA 2'-O-ribose methyltransferase [Halorhodospira
           halophila SL1]
          Length = 337

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQ------SNRRIVDLGSSPGSWSQVAARITGSNA 93
           +        +RS  KL +    H+++            VDLG++PG W+ +         
Sbjct: 163 RLRMPRNAPSRSVLKLEE--ALHRLVPENERPYPGEHAVDLGAAPGGWTWLLRER----- 215

Query: 94  NNTRVVAIDILDMEP----ILGVKFFKFD 118
               V AID   + P      GV+  + D
Sbjct: 216 -GLTVTAIDNGPLAPALADDPGVEHQRTD 243


>gi|168335198|ref|ZP_02693303.1| possible rRNA methyltransferase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 185

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 15/156 (9%)

Query: 55  LLQINEKHQIL-----QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           L Q+ +  + L      +   +VD     G+ +   A + G+     +V A DI D+   
Sbjct: 3   LKQMLDYAKFLLTQAIAAGDSVVDATCGNGNDTLFLANLVGAEG---KVYAFDIQDVAIA 59

Query: 110 LGVKFFKFDFLD-----LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
              +      +D      D  E   + +  +    + ++ Y   G   I           
Sbjct: 60  ETTRLLAEHNIDCVQVIKDGHEVAHKYMESSIAAAIFNLGYLPKGDHSITT--QSHTTIT 117

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           A    L+ L   G  ++  + G +   +     + F
Sbjct: 118 AVDHLLDYLKPNGIIVLVVYHGHSNGKLEKRALRSF 153


>gi|30519796|emb|CAD90833.1| non-structural polyprotein [Semliki forest virus]
          Length = 1804

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG+ L++ +
Sbjct: 1207 LGLPADAGRYDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGNLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|3114970|emb|CAA76683.1| polyprotein [Semliki forest virus]
          Length = 1336

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG+ L++ +
Sbjct: 1207 LGLPADAGRYDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGNLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|166159178|ref|YP_899469.2| polyprotein [Culex flavivirus]
 gi|166157428|dbj|BAF36740.2| polyprotein [Culex flavivirus]
          Length = 3363

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K Q  +     +DLG   G W+Q     T  
Sbjct: 2501 DKYRSRGVNETDKGDFVSRGGLKMDELIRKFQ-WEPKGAALDLGCGRGGWTQRLVMDTRV 2559

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            N+     +     +       K      L       +      + + ++ D+        
Sbjct: 2560 NSVTGLTLGGANRENPLPFKTKGHNLAVLKAGVD--VYATEPRDCNTIVCDIGESD-PRP 2616

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKTFQGGTTNDILC-LLKKHFQKVIHVKP 208
            +++  RT            + L  N G  F  K         +    + +H      V+ 
Sbjct: 2617 EVEKTRT----LKVLTMLEKWLVHNPGAAFCCKVLSPYHLEVLRKLEMLQHKHNGKLVRL 2672

Query: 209  VASRAESVEMFLL 221
              SR  + EM+ +
Sbjct: 2673 SLSRNSTAEMYYV 2685


>gi|163761046|ref|ZP_02168124.1| hemolysin-like protein [Hoeflea phototrophica DFL-43]
 gi|162281827|gb|EDQ32120.1| hemolysin-like protein [Hoeflea phototrophica DFL-43]
          Length = 259

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL    E      + R  +D+G+S G ++QV      ++     V+A+D+ 
Sbjct: 71  QAYVSRAALKLKAGLEAFGFDPAGRTALDIGASTGGFTQVLLEAGAAH-----VIAVDV- 124

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
                 G                +    G N   + +D          +  +  +SL   
Sbjct: 125 ------GHDQLHPSLTRDS---RVSNLEGLNARELGADHLAGHEIGAVVSDVSFISLKL- 174

Query: 165 ATFFALEMLNIG 176
           A   AL +   G
Sbjct: 175 ALPPALTLAAPG 186


>gi|320591403|gb|EFX03842.1| methyltransferase type 11 [Grosmannia clavigera kw1407]
          Length = 372

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 46/182 (25%)

Query: 55  LLQINEKHQILQ---SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP--- 108
           L+ ++ K  +        +IVDLG+  GSW+   A +         V+  D+  ++P   
Sbjct: 117 LVTLDGKLNLAPLSGPIGKIVDLGTGTGSWAIDFADLHPECT----VIGTDVSPIQPAWV 172

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
              V F   DF     W F  ++I    +  L       +   K                
Sbjct: 173 PPNVYFEIDDFTQP--WTFDSESIDYVHERWLVGCVPDWVAFYKE--------------- 215

Query: 169 ALEMLNIGGD---FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           A  +L  GG    F          N +                    A S   ++ A+G 
Sbjct: 216 AYRVLKPGGWIESFACDGLLESDDNTMTKDC----------------ATSQWSYIFAEGS 259

Query: 226 RK 227
           RK
Sbjct: 260 RK 261


>gi|289192158|ref|YP_003458099.1| THUMP domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938608|gb|ADC69363.1| THUMP domain protein [Methanocaldococcus sp. FS406-22]
          Length = 349

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 50  RSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSW----SQVAARITGSNANNTRVVAIDIL 104
           RS  K+ ++ +K     ++   +VD+GSSPG W    S+ A ++   +    ++ A +I+
Sbjct: 188 RSERKMDELIKKFPFIFENLNCVVDIGSSPGGWAKMLSKKAKKVYAIDTGELKIKANNII 247

Query: 105 DMEPILGVKFFKFDFLDL 122
            ++       F+ D  + 
Sbjct: 248 HIKKRAEYVDFEKDIGEE 265


>gi|289705625|ref|ZP_06502014.1| ribosomal RNA large subunit methyltransferase J [Micrococcus luteus
           SK58]
 gi|289557649|gb|EFD50951.1| ribosomal RNA large subunit methyltransferase J [Micrococcus luteus
           SK58]
          Length = 280

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 47  WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL- 104
           + +R+A+KL+   E    +  + RR +D G+S G ++QV     G+       V  D L 
Sbjct: 61  YVSRAAHKLVSALEAFPDVGVAGRRALDAGASTGGFTQVLLER-GAERVAAVDVGHDQLA 119

Query: 105 -DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
             +     V   +     L+  +   + I G  DLV+SD++             ++ L  
Sbjct: 120 PPVRADPRVLVREG----LNVRDLTAEDIDGPVDLVVSDLS-----------FISLRLVL 164

Query: 164 AATFFALEMLNIGGDFLVKT 183
           A       +   G + L+  
Sbjct: 165 APL---AGVCRPGAELLLMV 181


>gi|39995796|ref|NP_951747.1| hypothetical protein GSU0690 [Geobacter sulfurreducens PCA]
 gi|39982560|gb|AAR34020.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298504804|gb|ADI83527.1| rRNA methyltransferase, putative [Geobacter sulfurreducens KN400]
          Length = 189

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 11/127 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS- 124
           +   R+VD     G  +   A + G      RV A DI D       K  +         
Sbjct: 21  KPGDRVVDATCGNGHDTLFLAELVGPEG---RVWAFDIQDAALAATAKRLEAAGCGERVE 77

Query: 125 -----WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                 E + + + G    V+ ++ +                  AA   A E+L  GG  
Sbjct: 78  LVNGGHERLAELVPGPVTAVVFNLGFLPGAENGTITTPAT--TGAALDQATELLLPGGIV 135

Query: 180 LVKTFQG 186
            V  + G
Sbjct: 136 TVAVYTG 142


>gi|169782213|ref|XP_001825569.1| UMTA methyltransferase family protein [Aspergillus oryzae RIB40]
 gi|238500652|ref|XP_002381560.1| UMTA methyltransferase family protein [Aspergillus flavus NRRL3357]
 gi|83774312|dbj|BAE64436.1| unnamed protein product [Aspergillus oryzae]
 gi|220691797|gb|EED48144.1| UMTA methyltransferase family protein [Aspergillus flavus NRRL3357]
          Length = 324

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 24/116 (20%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLD 123
           + +RI+D+G+  G W+        +      +V  DI  ++P      VKF+  D     
Sbjct: 89  AGKRILDIGTGTGVWAMHLGDEYPTAEA---IVGNDISPIQPQWVPPNVKFYIDDV---- 141

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                R  + G    ++               +R               L  GG  
Sbjct: 142 ----ERDWVEGQKYDLIHCRYMAGSIKDWPRLIRQ----------CFRHLKPGGYL 183


>gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 425

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 20/153 (13%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-LGVKFFKFDFLDLDSWEF-- 127
           ++D+ ++PG  +     I        RVVA DI DM  +    K      L++++ +   
Sbjct: 252 VLDMCANPGGKTTHLLEILNKTG---RVVAWDIKDMVELRENAKRLGLSNLEIETRDATI 308

Query: 128 IRQAIGGNPDLVLSDM---------AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
             +      D VL D           +P I ++++D      + E     A + L  GG 
Sbjct: 309 YDEKYNEKFDYVLLDAPCSAIGLIRRHPEIRYKEVDLESITCVQEKLLDNAGKYLKPGGL 368

Query: 179 FL---VKTFQGGTTNDILCLLKKH--FQKVIHV 206
            +       +    N +   L+K+  F+K+   
Sbjct: 369 LMYSTCSVLEEENENIVDKFLEKNRDFEKIKTF 401


>gi|238919760|ref|YP_002933275.1| cyclopropane fatty acyl phospholipid synthase [Edwardsiella
           ictaluri 93-146]
 gi|238869329|gb|ACR69040.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 384

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 42/192 (21%)

Query: 21  SCQGSSRDWL--NRHI---NDPYVQRAQLEGWRARSAY-------------KLLQINEKH 62
           + Q   R W+    H    ND + +    +   +  AY             KL  I EK 
Sbjct: 106 NLQSRKRAWIVGKEHYDLGNDLFSRMLDPQMQYS-CAYWKTAQTLEQAQQDKLKLICEKL 164

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDF 119
           + LQ   R++D+G   G  +Q AA   G + +   + A      +     L VK    D+
Sbjct: 165 R-LQPGMRLLDIGCGWGGLAQYAAENYGVSVDGVTISAEQQKMAQARCQGLDVKILLQDY 223

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            D          +    D ++S   +  +G +                 A   L   G F
Sbjct: 224 RD----------LNNRYDRIVSVGMFEHVGPKNYRTY---------FEVAARNLKADGLF 264

Query: 180 LVKTFQGGTTND 191
           L+ T     T+ 
Sbjct: 265 LLHTIGSNQTDL 276


>gi|148559255|ref|YP_001258457.1| hemolysin A [Brucella ovis ATCC 25840]
 gi|148370512|gb|ABQ60491.1| hemolysin A [Brucella ovis ATCC 25840]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|153004004|ref|YP_001378329.1| hemolysin A [Anaeromyxobacter sp. Fw109-5]
 gi|152027577|gb|ABS25345.1| hemolysin A [Anaeromyxobacter sp. Fw109-5]
          Length = 252

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 27/144 (18%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A  + + +R A KL +  +   +  + +   DLG+S G ++ V  +         RV A+
Sbjct: 59  AAPQRYVSRGALKLEKALDVFPVDPAGKICADLGASTGGFTDVLLQR-----GAARVYAV 113

Query: 102 DILDMEPILGVKFFKFD----FLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           D+   +        + D      +  ++     +A+G   +LV  D++            
Sbjct: 114 DVGYGQLHPK---LRGDPRVVVRERENARALTAEALGTRVELVTGDLS-----------F 159

Query: 157 RTMSLCEAATFFALEMLNIGGDFL 180
            ++ L   A      +L  GG  +
Sbjct: 160 ISLRLVLPAV---RSILRPGGHAV 180


>gi|66356273|gb|AAY45741.1| nonstructural polyprotein [Mayaro virus]
          Length = 2435

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 132  IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKT-- 183
            +G  P+    D+ +  +      H       + A         AL +L  GG  L++   
Sbjct: 1205 LGLPPNAGRYDLVFVNMHTPYRLHHYQ-QCVDHAMKLQMLGGDALYLLKPGGSLLLRAYG 1263

Query: 184  FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +   T+  ++  L + F     V+P      + E+FLL   F
Sbjct: 1264 YADRTSEAVVTALARRFSSFRAVRPPCV-TSNTEVFLLFTNF 1304


>gi|293394688|ref|ZP_06638980.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422814|gb|EFE96051.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 366

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMHAVDLGACPGGWTYQLVKR------SMMVH 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|254693218|ref|ZP_05155046.1| Cell division protein FtsJ [Brucella abortus bv. 3 str. Tulya]
 gi|261213461|ref|ZP_05927742.1| hemolysin A [Brucella abortus bv. 3 str. Tulya]
 gi|260915068|gb|EEX81929.1| hemolysin A [Brucella abortus bv. 3 str. Tulya]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|330998941|ref|ZP_08322668.1| methyltransferase domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329576155|gb|EGG57674.1| methyltransferase domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 235

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 32/167 (19%)

Query: 39  VQRAQLEGWRA-----RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
               + EG+R      R  +K     E  + +    +++D+G  PG +S + A +     
Sbjct: 10  YWNTRSEGYRQQIEKEREEHKDEFYKEYFRQIPEVSKVLDIGCGPGFFSLLLASL----- 64

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
               V A D  +              +   + + + +    + +   +D  +        
Sbjct: 65  -GMNVTAADYSE-------------GMLEKAKDLLNRNGYHDVEFCRADAQHLPFADASF 110

Query: 154 DHLRTMSLC------EAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
           D + + +L       EAA    L +L  GG      F G     +  
Sbjct: 111 DAVVSRNLVWNLEDPEAAYKEWLRVLKPGGKLF--VFDGNHYCYLYN 155


>gi|14211778|gb|AAK57511.1|AF378007_1 core-spike protein lambda-2 [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 39.9 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRAGQSVAYFGASAG----------HSGADQPLVIEPWTQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E      +   + GG F+
Sbjct: 556 KGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVENLLDSCMHATSPGGSFV 613

Query: 181 VKTFQGGTTNDILCLLKKHFQ--KVIHVKPVASRAESVEMFLLAKG 224
           +K              K        + +KP  +   +VE+F +A G
Sbjct: 614 MKINFPTRAVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|306845066|ref|ZP_07477646.1| hemolysin A [Brucella sp. BO1]
 gi|306274481|gb|EFM56276.1| hemolysin A [Brucella sp. BO1]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|303256803|ref|ZP_07342817.1| SmtA protein [Burkholderiales bacterium 1_1_47]
 gi|302860294|gb|EFL83371.1| SmtA protein [Burkholderiales bacterium 1_1_47]
          Length = 235

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 46/174 (26%)

Query: 39  VQRAQLEGWRARSAYKLLQINEK------------HQILQSNRRIVDLGSSPGSWSQVAA 86
               + EG+R        QI ++             + +    +++D+G  PG +S + A
Sbjct: 10  YWNTRSEGYR-------QQIEKEREEHKDEFYKEYFRQIPEVSKVLDIGCGPGFFSLLLA 62

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
            +         V A D  +              +   + + + +    + +   +D  + 
Sbjct: 63  SL------GMNVTAADYSE-------------GMLEKAKDLLNRNGYHDVEFCRADAQHL 103

Query: 147 TIGHRKIDHLRTMSLC------EAATFFALEMLNIGGDFLVKTFQGGTTNDILC 194
                  D + + +L       EAA    L +L  GG      F G     +  
Sbjct: 104 PFADASFDAVVSRNLVWNLEDPEAAYKEWLRVLKPGGKLF--VFDGNHYCYLYN 155


>gi|258577097|ref|XP_002542730.1| hypothetical protein UREG_02246 [Uncinocarpus reesii 1704]
 gi|237902996|gb|EEP77397.1| hypothetical protein UREG_02246 [Uncinocarpus reesii 1704]
          Length = 348

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 23/130 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           +++ +R++D+G+  G W+               ++  D+  ++P      VKF+  DF  
Sbjct: 110 IKAPQRVLDIGTGTGIWAIE----FADEFPGALIIGTDLSPIQPGFVPPNVKFYVDDF-- 163

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
              WEF     G +                    + +          A   L  GG   V
Sbjct: 164 EAPWEF-----GEDKKFDYVHWRSLCGSTNDWPKVYSE---------AFNNLKPGGWLEV 209

Query: 182 KTFQGGTTND 191
           + +     +D
Sbjct: 210 QEYDAWIFSD 219


>gi|320036836|gb|EFW18774.1| methyltransferase [Coccidioides posadasii str. Silveira]
          Length = 343

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 27/150 (18%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  +  + +RI+D G+  G W+   A    S+     V+  D+  ++P       KF+  
Sbjct: 99  RAPLPSNPQRILDFGTGTGIWAIDIADEFPSSE----VIGTDLSPIQPTWIPPNCKFYV- 153

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                D         G   D +       +I +    + R           A + L  GG
Sbjct: 154 ----DDVESEWPYQPGEEFDFIHGRGMGGSIANWDQLYER-----------AYQHLKPGG 198

Query: 178 DFLVKTFQ---GGTTNDIL-CLLKKHFQKV 203
              ++ ++       N +    L K FQ+V
Sbjct: 199 WIEMQEYETDVHSDDNSLDNARLIKKFQRV 228


>gi|319761258|ref|YP_004125195.1| cyclopropane-fatty-acyl-phospholipid synthase [Alicycliphilus
           denitrificans BC]
 gi|317115819|gb|ADU98307.1| Cyclopropane-fatty-acyl-phospholipid synthase [Alicycliphilus
           denitrificans BC]
          Length = 432

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I  K  +L+   R +D+G+  G     AA+  G +A    +       ++ ++  +
Sbjct: 158 KLDHICRKL-MLRPGERFLDIGAGWGGLLLWAAQHYGVDATGITLSRNQHAHVQRLIEER 216

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL--E 171
             +     +   ++    +    D + S   +  +GH ++ H            FA    
Sbjct: 217 GLQGRVR-MQLLDYRVLQVPEPFDKIASVGMFEHVGHAQMGHY-----------FATVHR 264

Query: 172 MLNIGGDFLVKTFQGGTTND 191
           +L  GG  +      G  ++
Sbjct: 265 LLRPGGLLMNHGITAGGLDN 284


>gi|303318016|ref|XP_003069010.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108691|gb|EER26865.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 290

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 27/150 (18%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  +  + +RI+D G+  G W+   A    S+     V+  D+  ++P       KF+  
Sbjct: 46  RAPLPSNPQRILDFGTGTGIWAIDIADEFPSSE----VIGTDLSPIQPTWIPPNCKFYV- 100

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                D         G   D +       +I +    + R           A + L  GG
Sbjct: 101 ----DDVESEWPYQPGEEFDFIHGRGMGGSIANWDQLYER-----------AYQHLKPGG 145

Query: 178 DFLVKTFQ---GGTTNDIL-CLLKKHFQKV 203
              ++ ++       N +    L K FQ+V
Sbjct: 146 WIEMQEYETDVHSDDNSLDNARLIKKFQRV 175


>gi|119186115|ref|XP_001243664.1| hypothetical protein CIMG_03105 [Coccidioides immitis RS]
          Length = 384

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 27/150 (18%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  +  + +RI+D G+  G W+   A    S+     V+  D+  ++P       KF+  
Sbjct: 140 RAPLPSNPQRILDFGTGTGIWAIDIADEFPSSE----VIGTDLSPIQPTWIPPNCKFYV- 194

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                D         G   D +       +I +    + R           A + L  GG
Sbjct: 195 ----DDVESEWPYQPGEEFDFIHGRGMGGSIANWDQLYER-----------AYQHLKPGG 239

Query: 178 DFLVKTFQ---GGTTNDIL-CLLKKHFQKV 203
              ++ ++       N +    L K FQ+V
Sbjct: 240 WIEMQEYETDVHSDDNSLDNARLIKKFQRV 269


>gi|17987780|ref|NP_540414.1| hemolysin [Brucella melitensis bv. 1 str. 16M]
 gi|225851973|ref|YP_002732206.1| hemolysin A [Brucella melitensis ATCC 23457]
 gi|256044154|ref|ZP_05447061.1| hemolysin A [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112957|ref|ZP_05453865.1| hemolysin A [Brucella melitensis bv. 3 str. Ether]
 gi|256264519|ref|ZP_05467051.1| cell division protein FtsJ [Brucella melitensis bv. 2 str. 63/9]
 gi|260563511|ref|ZP_05833997.1| cell division protein FtsJ [Brucella melitensis bv. 1 str. 16M]
 gi|265990566|ref|ZP_06103123.1| hemolysin A [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994396|ref|ZP_06106953.1| hemolysin A [Brucella melitensis bv. 3 str. Ether]
 gi|17983504|gb|AAL52678.1| hemolysin [Brucella melitensis bv. 1 str. 16M]
 gi|225640338|gb|ACO00252.1| hemolysin A [Brucella melitensis ATCC 23457]
 gi|260153527|gb|EEW88619.1| cell division protein FtsJ [Brucella melitensis bv. 1 str. 16M]
 gi|262765509|gb|EEZ11298.1| hemolysin A [Brucella melitensis bv. 3 str. Ether]
 gi|263001350|gb|EEZ13925.1| hemolysin A [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094852|gb|EEZ18590.1| cell division protein FtsJ [Brucella melitensis bv. 2 str. 63/9]
 gi|326408469|gb|ADZ65534.1| hemolysin A [Brucella melitensis M28]
 gi|326538186|gb|ADZ86401.1| hemolysin A [Brucella melitensis M5-90]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|332203232|gb|EGJ17300.1| nop2p [Streptococcus pneumoniae GA47901]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLISNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGHLV 217


>gi|212703642|ref|ZP_03311770.1| hypothetical protein DESPIG_01687 [Desulfovibrio piger ATCC 29098]
 gi|212672937|gb|EEB33420.1| hypothetical protein DESPIG_01687 [Desulfovibrio piger ATCC 29098]
          Length = 256

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E + +R AYKLL I +  ++  S    +D G+S G ++    +        TRV A+D+
Sbjct: 69  QERFVSRGAYKLLTILDNFKLDVSGMVCLDAGASTGGFTDCLLQ-----HGATRVYAVDV 123


>gi|81945903|sp|Q8B0H5|L_VSIVS RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|23305073|gb|AAN16989.1| L polymerase protein [Vesicular stomatitis Indiana virus]
          Length = 2109

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 118  DFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            D  D  +W+    ++  +G   DL++ DM                        +   +L+
Sbjct: 1735 DLCDPRTWDYFLRLKAGLGLQIDLIVMDMEVRDSSTSLKIESN-------VRNYVHRILD 1787

Query: 175  IGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
              G  + KT+      +  + + +L   F+ V  V+   S +++ E++++ KG +K
Sbjct: 1788 EQGVLIYKTYGTYICESEKNAVTILGPLFKTVDLVQTEFSSSQTSELYMVCKGLKK 1843


>gi|23501338|ref|NP_697465.1| hemolysin A [Brucella suis 1330]
 gi|62289422|ref|YP_221215.1| hemolysin A [Brucella abortus bv. 1 str. 9-941]
 gi|82699349|ref|YP_413923.1| cell division protein FtsJ [Brucella melitensis biovar Abortus
           2308]
 gi|161618409|ref|YP_001592296.1| hemolysin A [Brucella canis ATCC 23365]
 gi|189023673|ref|YP_001934441.1| Cell division protein FtsJ [Brucella abortus S19]
 gi|225626945|ref|ZP_03784984.1| hemolysin A [Brucella ceti str. Cudo]
 gi|237814910|ref|ZP_04593908.1| hemolysin A [Brucella abortus str. 2308 A]
 gi|254688735|ref|ZP_05151989.1| Cell division protein FtsJ [Brucella abortus bv. 6 str. 870]
 gi|254696863|ref|ZP_05158691.1| Cell division protein FtsJ [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701242|ref|ZP_05163070.1| Cell division protein FtsJ [Brucella suis bv. 5 str. 513]
 gi|254703789|ref|ZP_05165617.1| Cell division protein FtsJ [Brucella suis bv. 3 str. 686]
 gi|254707834|ref|ZP_05169662.1| Cell division protein FtsJ [Brucella pinnipedialis M163/99/10]
 gi|254709585|ref|ZP_05171396.1| Cell division protein FtsJ [Brucella pinnipedialis B2/94]
 gi|254729768|ref|ZP_05188346.1| Cell division protein FtsJ [Brucella abortus bv. 4 str. 292]
 gi|256031077|ref|ZP_05444691.1| Cell division protein FtsJ [Brucella pinnipedialis M292/94/1]
 gi|256060571|ref|ZP_05450739.1| Cell division protein FtsJ [Brucella neotomae 5K33]
 gi|256159141|ref|ZP_05456962.1| Cell division protein FtsJ [Brucella ceti M490/95/1]
 gi|256254480|ref|ZP_05460016.1| Cell division protein FtsJ [Brucella ceti B1/94]
 gi|256256982|ref|ZP_05462518.1| Cell division protein FtsJ [Brucella abortus bv. 9 str. C68]
 gi|256368892|ref|YP_003106398.1| hemolysin A [Brucella microti CCM 4915]
 gi|260168208|ref|ZP_05755019.1| hemolysin A [Brucella sp. F5/99]
 gi|260545826|ref|ZP_05821567.1| cell division protein FtsJ [Brucella abortus NCTC 8038]
 gi|260566958|ref|ZP_05837428.1| cell division protein FtsJ [Brucella suis bv. 4 str. 40]
 gi|260754214|ref|ZP_05866562.1| hemolysin A [Brucella abortus bv. 6 str. 870]
 gi|260757434|ref|ZP_05869782.1| hemolysin A [Brucella abortus bv. 4 str. 292]
 gi|260761259|ref|ZP_05873602.1| hemolysin A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883239|ref|ZP_05894853.1| hemolysin A [Brucella abortus bv. 9 str. C68]
 gi|261221653|ref|ZP_05935934.1| hemolysin A [Brucella ceti B1/94]
 gi|261315321|ref|ZP_05954518.1| hemolysin A [Brucella pinnipedialis M163/99/10]
 gi|261317113|ref|ZP_05956310.1| hemolysin A [Brucella pinnipedialis B2/94]
 gi|261324566|ref|ZP_05963763.1| hemolysin A [Brucella neotomae 5K33]
 gi|261751781|ref|ZP_05995490.1| hemolysin A [Brucella suis bv. 5 str. 513]
 gi|261754436|ref|ZP_05998145.1| hemolysin A [Brucella suis bv. 3 str. 686]
 gi|261757669|ref|ZP_06001378.1| cell division protein FtsJ [Brucella sp. F5/99]
 gi|265988150|ref|ZP_06100707.1| hemolysin A [Brucella pinnipedialis M292/94/1]
 gi|265997615|ref|ZP_06110172.1| hemolysin A [Brucella ceti M490/95/1]
 gi|294851815|ref|ZP_06792488.1| hemolysin [Brucella sp. NVSL 07-0026]
 gi|297247835|ref|ZP_06931553.1| hemolysin [Brucella abortus bv. 5 str. B3196]
 gi|23347229|gb|AAN29380.1| hemolysin A [Brucella suis 1330]
 gi|62195554|gb|AAX73854.1| TlyA, hemolysin A [Brucella abortus bv. 1 str. 9-941]
 gi|82615450|emb|CAJ10419.1| Cell division protein FtsJ:RNA-binding S4:Hemolysin A [Brucella
           melitensis biovar Abortus 2308]
 gi|161335220|gb|ABX61525.1| hemolysin A [Brucella canis ATCC 23365]
 gi|189019245|gb|ACD71967.1| Cell division protein FtsJ [Brucella abortus S19]
 gi|225618602|gb|EEH15645.1| hemolysin A [Brucella ceti str. Cudo]
 gi|237789747|gb|EEP63957.1| hemolysin A [Brucella abortus str. 2308 A]
 gi|255999050|gb|ACU47449.1| hemolysin A [Brucella microti CCM 4915]
 gi|260097233|gb|EEW81108.1| cell division protein FtsJ [Brucella abortus NCTC 8038]
 gi|260156476|gb|EEW91556.1| cell division protein FtsJ [Brucella suis bv. 4 str. 40]
 gi|260667752|gb|EEX54692.1| hemolysin A [Brucella abortus bv. 4 str. 292]
 gi|260671691|gb|EEX58512.1| hemolysin A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674322|gb|EEX61143.1| hemolysin A [Brucella abortus bv. 6 str. 870]
 gi|260872767|gb|EEX79836.1| hemolysin A [Brucella abortus bv. 9 str. C68]
 gi|260920237|gb|EEX86890.1| hemolysin A [Brucella ceti B1/94]
 gi|261296336|gb|EEX99832.1| hemolysin A [Brucella pinnipedialis B2/94]
 gi|261300546|gb|EEY04043.1| hemolysin A [Brucella neotomae 5K33]
 gi|261304347|gb|EEY07844.1| hemolysin A [Brucella pinnipedialis M163/99/10]
 gi|261737653|gb|EEY25649.1| cell division protein FtsJ [Brucella sp. F5/99]
 gi|261741534|gb|EEY29460.1| hemolysin A [Brucella suis bv. 5 str. 513]
 gi|261744189|gb|EEY32115.1| hemolysin A [Brucella suis bv. 3 str. 686]
 gi|262552083|gb|EEZ08073.1| hemolysin A [Brucella ceti M490/95/1]
 gi|264660347|gb|EEZ30608.1| hemolysin A [Brucella pinnipedialis M292/94/1]
 gi|294820404|gb|EFG37403.1| hemolysin [Brucella sp. NVSL 07-0026]
 gi|297175004|gb|EFH34351.1| hemolysin [Brucella abortus bv. 5 str. B3196]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|298246976|ref|ZP_06970781.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549635|gb|EFH83501.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 30/138 (21%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------- 105
           L QI E+  +     R++++G  PG ++ + AR          V  +++           
Sbjct: 81  LEQIVERAGVT-PGMRVLEIGPGPGHFTTLLARRVAEQGKQGSVTCVELQPEMIARLRQQ 139

Query: 106 --MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
              E +  V+  + D             +  + D+V   +A        +  L +     
Sbjct: 140 LHREQVNNVEIVQGD-------AQQLPLLSASFDMVF--LATVIGEVPDMPALFSE---- 186

Query: 164 AATFFALEMLNIGGDFLV 181
                   +L  GG   V
Sbjct: 187 -----CARVLKPGGTLAV 199


>gi|109390475|gb|ABG33779.1| 286 kDa polyprotein [Citrus leprosis virus C]
          Length = 2512

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 168  FALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEM---FLLAKG 224
             A   L+ GG  + + F+     + L  L   F+ +   KP A    S  +   +LL  G
Sbjct: 991  LAWSALSSGGTAVFRVFRPEEVPESLNTLTTLFEDIRFFKPKA---ISTSIVDGYLLCSG 1047

Query: 225  FR 226
             R
Sbjct: 1048 KR 1049


>gi|169833895|ref|YP_001694837.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996397|gb|ACA37009.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGHLV 217


>gi|168486097|ref|ZP_02710605.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1087-00]
 gi|183570809|gb|EDT91337.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1087-00]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGHLV 217


>gi|149019358|ref|ZP_01834720.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147931228|gb|EDK82207.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGHLV 217


>gi|148989524|ref|ZP_01820883.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP6-BS73]
 gi|149007328|ref|ZP_01830986.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP18-BS74]
 gi|307127029|ref|YP_003879060.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 670-6B]
 gi|147761132|gb|EDK68100.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147925067|gb|EDK76148.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP6-BS73]
 gi|306484091|gb|ADM90960.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 670-6B]
 gi|332074725|gb|EGI85199.1| nop2p [Streptococcus pneumoniae GA17545]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGHLV 217


>gi|15901256|ref|NP_345860.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae TIGR4]
 gi|111658595|ref|ZP_01409252.1| hypothetical protein SpneT_02000270 [Streptococcus pneumoniae
           TIGR4]
 gi|14972890|gb|AAK75500.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae TIGR4]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGHLV 217


>gi|118474156|ref|YP_892281.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|261885964|ref|ZP_06010003.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
 gi|118413382|gb|ABK81802.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 287

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 13/148 (8%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG--------VKFFKFD 118
             + ++D+ +SPG  S   +     N     + +                   VK +  D
Sbjct: 101 PGQTVLDMCASPGGKSIALSNFMEKNGYLATMESDTNRFFTLKSNLKKYNCEWVKTYNKD 160

Query: 119 FLDLD--SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
              +    +E   + +   P    S            +      L +     AL  L  G
Sbjct: 161 ARSVSRTCYEKFDKILLDAPCSSYSCYNENFKEKSYKEIKNISKLQKQLLNSALNALKSG 220

Query: 177 GDFL---VKTFQGGTTNDILCLLKKHFQ 201
           G+ +      ++      I   L   F+
Sbjct: 221 GEIVYSTCTFYKEENEEVIKNALNSKFK 248


>gi|11993696|gb|AAG42853.1|AF323753_8 SnogM [Streptomyces nogalater]
          Length = 278

 Score = 39.9 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R++ +L ++  +   +   +R++D+G   G+ +   AR TG+      VV I I   +  
Sbjct: 46  RASQRLTEMMTERIEVGPGQRVLDIGCGTGAPAVQLARATGAE-----VVGITISPEQ-- 98

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA-----YPTIGHRKIDHLRTMSL--C 162
                     + L +    R+ +        +D +                     L   
Sbjct: 99  ----------VRLATAHAEREGVAERVTFRCADASAELPFPADSFDAVWFFESIFHLPDR 148

Query: 163 EAATFFALEMLNIGG 177
             A   A E+L  GG
Sbjct: 149 LTALRRAAEVLRPGG 163


>gi|296124547|gb|ADG95925.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124530|gb|ADG95914.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124524|gb|ADG95910.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124516|gb|ADG95905.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124513|gb|ADG95903.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124499|gb|ADG95894.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124496|gb|ADG95892.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|296124493|gb|ADG95890.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2472

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|229544321|ref|ZP_04433380.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1]
 gi|229325460|gb|EEN91136.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1]
          Length = 458

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 27/136 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNA---------NNTRVVAIDILDMEPILGVKFF 115
           L+   +++DL ++PG  S   A   G N             R ++ +I  +     V   
Sbjct: 99  LEKGDKVLDLCAAPGGKSTQIASGIGENGFLLANEIHPKRVRALSENIERLGFSNTVVT- 157

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDH-LRTMSLCEA 164
                  ++ E + +      D +L D                     +H         A
Sbjct: 158 ------NETPEKLSRHFENYFDKILVDAPCSGEGMFRKDPEAARFWSQEHVEACAQKQRA 211

Query: 165 ATFFALEMLNIGGDFL 180
               A +ML  GG  +
Sbjct: 212 ILEHAWKMLKPGGTLV 227


>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
 gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
          Length = 467

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPIL-GVKFFKFDFLDL 122
           +    ++D+ S+PG  +   A+I  +N     V+A DI +  +  I    +    D +  
Sbjct: 271 KEGETVIDVCSAPGGKATHIAQIMNNNGT---VLARDIYEHKLNLIEQSCRRLGIDIIKT 327

Query: 123 DSWEF--IRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLR-TMSLCEAATFFA 169
           +  +   I + + G  D VL D                  R  + L+    L +     A
Sbjct: 328 EIHDACDIDENLIGKADRVLIDAPCSGLGIIRKKPDIKYSRTENELKEITDLQQKILNIA 387

Query: 170 LEMLNIGGDFL 180
              L +GG  +
Sbjct: 388 ARYLKVGGYLI 398


>gi|261402926|ref|YP_003247150.1| THUMP domain protein [Methanocaldococcus vulcanius M7]
 gi|261369919|gb|ACX72668.1| THUMP domain protein [Methanocaldococcus vulcanius M7]
          Length = 349

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 50  RSAYKLLQINEKH-QILQSNRRIVDLGSSPGSW----SQVAARITGSNANNTRVVAIDIL 104
           RS  K+ ++ EK  ++      +VD+G+SPG W    S++A ++   +    +V   +I+
Sbjct: 188 RSERKMQELIEKFPELFIDLNCVVDIGASPGGWAKLLSKLAKKVYAIDTGELKVKNDNII 247

Query: 105 DMEPILGVKFFKFDFLDL 122
            ++       FK D  + 
Sbjct: 248 HIKKRAESVNFKEDINED 265


>gi|50554297|ref|XP_504557.1| YALI0E29557p [Yarrowia lipolytica]
 gi|49650426|emb|CAG80161.1| YALI0E29557p [Yarrowia lipolytica]
          Length = 862

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 3   KPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH 62
           +P G +  R      + RS +  ++ W      DP  +RA+    R+R+ Y     NE H
Sbjct: 400 EPSGRTEGRSWATPFRRRSKKDLNKGWNRSQSRDPAEERARTPNPRSRTPY---DSNETH 456

Query: 63  QILQSNRRIVDL 74
           + L       DL
Sbjct: 457 EALSVGANTFDL 468


>gi|304321305|ref|YP_003854948.1| Hemolysin HlyA [Parvularcula bermudensis HTCC2503]
 gi|303300207|gb|ADM09806.1| Hemolysin HlyA [Parvularcula bermudensis HTCC2503]
          Length = 243

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 24/127 (18%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R+A+KLL   E       +   +D+G+S G ++QV            RV A+D+   
Sbjct: 57  YVSRAAFKLLAALEAFSFDPQDLLCLDIGASTGGFTQVLC-----LKGARRVYAVDVGHG 111

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
           +    V                    G  P + L  +   T+   ++    +   C+ + 
Sbjct: 112 QLAPEV-------------------AGAPPVINLEGVNAKTLTRHEVPEPISFLTCDVSF 152

Query: 167 FFALEML 173
             A ++L
Sbjct: 153 ISARKVL 159


>gi|228953546|ref|ZP_04115589.1| hypothetical protein bthur0006_29230 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229070721|ref|ZP_04203951.1| hypothetical protein bcere0025_28980 [Bacillus cereus F65185]
 gi|228712391|gb|EEL64336.1| hypothetical protein bcere0025_28980 [Bacillus cereus F65185]
 gi|228806130|gb|EEM52706.1| hypothetical protein bthur0006_29230 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 415

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  +K++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLKQIKQYFYVEEAPVSPYKP 291


>gi|229080454|ref|ZP_04212975.1| hypothetical protein bcere0023_30980 [Bacillus cereus Rock4-2]
 gi|228702756|gb|EEL55221.1| hypothetical protein bcere0023_30980 [Bacillus cereus Rock4-2]
          Length = 415

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  +K++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLKQIKQYFYVEEAPVSPYKP 291


>gi|229191311|ref|ZP_04318297.1| hypothetical protein bcere0002_29750 [Bacillus cereus ATCC 10876]
 gi|228592116|gb|EEK49949.1| hypothetical protein bcere0002_29750 [Bacillus cereus ATCC 10876]
          Length = 415

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  +K++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLKQIKQYFYVEEAPVSPYKP 291


>gi|195441370|ref|XP_002068484.1| GK20395 [Drosophila willistoni]
 gi|194164569|gb|EDW79470.1| GK20395 [Drosophila willistoni]
          Length = 457

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 30/163 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-----ILDMEPILGV-KFFKFDF 119
           Q   R++D+ ++PG+ +   A +     +   +VA+D     I  M+  +G  K  +   
Sbjct: 233 QPGDRVLDMCAAPGNKTSHIAELM---RDQGVLVALDNSKSRIKAMQSRIGHYKCIQSHV 289

Query: 120 LD-LDSWEFIRQAIGGNP----DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ 168
            D   +           P          +  P  G      L   S  + A         
Sbjct: 290 FDSTKALAEHNDQHNDPPFSSASFDRILLDAPCSGIGNRPQLSCASQLKTAKDLKSYPNI 349

Query: 169 -------ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKHFQ 201
                  A+ +L  GG  +       +      +   L+K  +
Sbjct: 350 QRRLFGQAVHLLRPGGTLVYSTCTVTEAECEEIVEWALRKFPE 392


>gi|51893507|ref|YP_076198.1| arsenite S-adenosylmethyltransferase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857196|dbj|BAD41354.1| putative methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 278

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 26/121 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+    ++DLGS  G    +AAR  G +    RV+ +D+                 ++ +
Sbjct: 91  LKPGETVLDLGSGAGFDCFLAARQVGESG---RVIGVDMTP---------------EMLA 132

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC--------EAATFFALEMLNIG 176
                   GG  ++         +          +S C        E     A  +L  G
Sbjct: 133 RARENARKGGFANVEFRLGEIEHLPVADESVDVIISNCVINLSPEKEQVFREAFRVLRPG 192

Query: 177 G 177
           G
Sbjct: 193 G 193


>gi|330823125|ref|YP_004386428.1| Cyclopropane-fatty-acyl-phospholipid synthase [Alicycliphilus
           denitrificans K601]
 gi|329308497|gb|AEB82912.1| Cyclopropane-fatty-acyl-phospholipid synthase [Alicycliphilus
           denitrificans K601]
          Length = 432

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I  K  +L+   R +D+G+  G     AA   G +A    +       ++ ++  +
Sbjct: 158 KLDHICRKL-MLRPGERFLDIGAGWGGLLLWAAEHYGVDATGITLSRNQHAHVQRLIEER 216

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL--E 171
             +     +   ++    +    D + S   +  +GH ++ H            FA    
Sbjct: 217 GLQGRVR-MQLLDYRVLQVPEPFDKIASVGMFEHVGHAQMGHY-----------FATVHR 264

Query: 172 MLNIGGDFLVKTFQGGTTND 191
           +L  GG  +      G  ++
Sbjct: 265 LLRPGGLLMNHGITAGGLDN 284


>gi|163842717|ref|YP_001627121.1| hemolysin A [Brucella suis ATCC 23445]
 gi|163673440|gb|ABY37551.1| hemolysin A [Brucella suis ATCC 23445]
          Length = 238

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 51  YVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 102


>gi|9634976|ref|NP_054697.1| RNA polymerase [Tupaia paramyxovirus]
 gi|7536534|gb|AAF63393.1|AF079780_8 RNA polymerase [Tupaia paramyxovirus]
          Length = 2270

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 120  LDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
             + + + +I   +      L+  D+        +        +        L +L+  G 
Sbjct: 1942 GNPECYCYILSTVSHESVSLIHCDLESNFEKDTETVIEEQCHI----LSLGLTLLSKDGI 1997

Query: 179  FLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
             + K      G    +L   +  F  V  V P  S  ES E +L+A   ++
Sbjct: 1998 LVTKLCPDASGYIVPLLRSYQNFFSTVEIVLPQFSNPESTEFYLVAYQIKR 2048


>gi|296503748|ref|YP_003665448.1| hypothetical protein BMB171_C2918 [Bacillus thuringiensis BMB171]
 gi|296324800|gb|ADH07728.1| conserved hypothetical protein [Bacillus thuringiensis BMB171]
          Length = 415

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKITDEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEAPVSPYKP 291


>gi|284167027|ref|YP_003405306.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284016682|gb|ADB62633.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 226

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 31/127 (24%), Gaps = 32/127 (25%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------MEPILGVKFFKF 117
           +S   ++DLG   G     A R      +  RV  +D                 V F   
Sbjct: 37  ESGDVVLDLGCGSG----YAGRALRDTKDAGRVYGLDGAPEMARNAAEYTDDPAVGFLVG 92

Query: 118 DFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           DF +   + + I            +D  +                          +L  G
Sbjct: 93  DFNELPFADDSIDHVWSMEAFYYAADPQH-------------------TLEEIARVLRPG 133

Query: 177 GDFLVKT 183
           G F    
Sbjct: 134 GTFYCAV 140


>gi|206577662|ref|YP_002236309.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
           pneumoniae 342]
 gi|224493255|sp|B5XNC2|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
           pneumoniae 342]
          Length = 431

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++ + ++  RI+DL ++PG  +     +    A   +V+A+DI +          K   +
Sbjct: 240 RYLLPENGERILDLCAAPGGKTTHILEV----APQAQVMAVDIDEQRLSRVYDNLKRLGM 295

Query: 121 DLDSWE---FIRQAIGGNPDLVLSDMAYPTIG-------------HRKIDHLRTMSLCEA 164
             +  +      +   GN       +  P                 R  D      L   
Sbjct: 296 KAEVKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAE 355

Query: 165 ATFFALEMLNIGGDFL 180
                 E L  GG  +
Sbjct: 356 ILNSTWEHLKPGGTLV 371


>gi|291084823|ref|ZP_06542659.2| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 323

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 123 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 182

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 183 TYQLVKRNMW-------VYSVDNGPM 201


>gi|213622670|ref|ZP_03375453.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 278

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|213586796|ref|ZP_03368622.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 258

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|213028090|ref|ZP_03342537.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 287

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|205353922|ref|YP_002227723.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226705370|sp|B5RDV8|RLMM_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|205273703|emb|CAR38696.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326629036|gb|EGE35379.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|170293258|gb|ACB12687.1| nonstructural polyprotein [Semliki forest virus]
          Length = 1811

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|168820294|ref|ZP_02832294.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205342969|gb|EDZ29733.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087405|emb|CBY97170.1| putative RNA 2'-O-ribose methyltransferase VF_0593 [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|168261869|ref|ZP_02683842.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|197251472|ref|YP_002147892.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|226705367|sp|B5F4S7|RLMM_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|197215175|gb|ACH52572.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205349128|gb|EDZ35759.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|198245568|ref|YP_002216956.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|226705368|sp|B5FTY5|RLMM_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|197940084|gb|ACH77417.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624721|gb|EGE31066.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|145314588|gb|ABP58684.1| nonstructural polyprotein [Semliki Forest virus expression vector
            pSFV4(PD)]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|157372038|ref|YP_001480027.1| putative RNA 2'-O-ribose methyltransferase [Serratia proteamaculans
           568]
 gi|172047670|sp|A8GIF9|RLMM_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|157323802|gb|ABV42899.1| conserved hypothetical protein [Serratia proteamaculans 568]
          Length = 367

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMHAVDLGACPGGWTYQLVQR------SMMVH 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|6523491|emb|CAB62256.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859970|gb|ABA29028.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859963|gb|ABA29024.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859967|gb|ABA29026.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859975|gb|ABA29031.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859965|gb|ABA29025.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859961|gb|ABA29023.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|75859972|gb|ABA29029.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|90110044|sp|P08411|POLN_SFV RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|75859977|gb|ABA29032.1| polyprotein nsP1234 [Semliki forest virus]
          Length = 2432

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKTF 184
            +G   D    D+         +I H +     + A         AL +L  GG  L++ +
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGSLLMRAY 1264

Query: 185  QGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
                  +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 GYADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1306


>gi|62181490|ref|YP_217907.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224584770|ref|YP_002638568.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|75481114|sp|Q57KD6|RLMM_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|254809566|sp|C0PXG9|RLMM_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|62129123|gb|AAX66826.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224469297|gb|ACN47127.1| hypothetical protein SPC_3039 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715973|gb|EFZ07544.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|56414929|ref|YP_152004.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168242748|ref|ZP_02667680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447576|ref|YP_002046952.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197363857|ref|YP_002143494.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200387439|ref|ZP_03214051.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|81359869|sp|Q5PEK5|RLMM_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705371|sp|B4TGN7|RLMM_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705373|sp|B5BF35|RLMM_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|56129186|gb|AAV78692.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194405880|gb|ACF66099.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197095334|emb|CAR60892.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|199604537|gb|EDZ03082.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205338204|gb|EDZ24968.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|16761758|ref|NP_457375.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766284|ref|NP_461899.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143242|ref|NP_806584.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161615915|ref|YP_001589880.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167993478|ref|ZP_02574572.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231075|ref|ZP_02656133.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236032|ref|ZP_02661090.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168463864|ref|ZP_02697781.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446481|ref|YP_002042232.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194468842|ref|ZP_03074826.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194734556|ref|YP_002115933.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197264203|ref|ZP_03164277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|204928344|ref|ZP_03219544.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207858245|ref|YP_002244896.1| RNA 2'-O-ribose methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213052972|ref|ZP_03345850.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213424890|ref|ZP_03357640.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213649823|ref|ZP_03379876.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213857812|ref|ZP_03384783.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238909759|ref|ZP_04653596.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829843|ref|ZP_06547358.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|81416253|sp|Q7CPW1|RLMM_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|81499500|sp|Q8XFI3|RLMM_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|189040352|sp|A9N2J6|RLMM_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705369|sp|B5QWR4|RLMM_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705372|sp|B4T4X5|RLMM_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705374|sp|B4TUK1|RLMM_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|25366982|pir||AF0863 conserved hypothetical protein STY3120 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421530|gb|AAL21858.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504060|emb|CAD02806.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138875|gb|AAO70444.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161365279|gb|ABX69047.1| hypothetical protein SPAB_03709 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405144|gb|ACF65366.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194455206|gb|EDX44045.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710058|gb|ACF89279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633496|gb|EDX51910.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197242458|gb|EDY25078.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290842|gb|EDY30196.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322666|gb|EDZ07863.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205328451|gb|EDZ15215.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334556|gb|EDZ21320.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|206710048|emb|CAR34403.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995120|gb|ACY90005.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159540|emb|CBW19059.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914001|dbj|BAJ37975.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225663|gb|EFX50717.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322613382|gb|EFY10323.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620974|gb|EFY17832.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624037|gb|EFY20871.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628223|gb|EFY25012.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633342|gb|EFY30084.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636080|gb|EFY32788.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639417|gb|EFY36105.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643720|gb|EFY40272.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648833|gb|EFY45280.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655174|gb|EFY51484.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657995|gb|EFY54263.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664097|gb|EFY60296.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667065|gb|EFY63237.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673114|gb|EFY69221.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677895|gb|EFY73958.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681070|gb|EFY77103.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685666|gb|EFY81660.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131338|gb|ADX18768.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194805|gb|EFZ79992.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196556|gb|EFZ81704.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205030|gb|EFZ90013.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207768|gb|EFZ92714.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212679|gb|EFZ97496.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214837|gb|EFZ99585.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222567|gb|EGA06932.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226446|gb|EGA10654.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230674|gb|EGA14792.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234975|gb|EGA19061.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239013|gb|EGA23063.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244629|gb|EGA28635.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247244|gb|EGA31210.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251777|gb|EGA35642.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256420|gb|EGA40156.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262404|gb|EGA45960.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267500|gb|EGA50984.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269096|gb|EGA52551.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|332989850|gb|AEF08833.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGW 225

Query: 82  S-QVAARITGSNANNTRVVAIDILDM 106
           + Q+  R          V ++D   M
Sbjct: 226 TYQLVKRNMW-------VYSVDNGPM 244


>gi|296206262|ref|XP_002750130.1| PREDICTED: putative methyltransferase NSUN6 [Callithrix jacchus]
          Length = 468

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILG---VKF 114
           Q   +I+DL ++PG  +   A +         V+A+D        I     +LG   ++ 
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMHDQGE---VIALDKIFNKVEKIQQNASLLGLNSIRA 289

Query: 115 FKFDFL-----DLDSWEFIRQAIGGNPDLVLSDM-------AYPTIGHRKIDHLRTMS-L 161
           F FD       D+   E     +    D +L D                 +  + +   L
Sbjct: 290 FCFDGTKAVKLDMVDTEEEPPFLPETFDRILLDAPCSGMGQRPNMACTWSLKEVTSYQPL 349

Query: 162 CEAATFFALEMLNIGGDFL 180
                  A+++L  GG  +
Sbjct: 350 QRKLFTVAVQLLKPGGVLV 368


>gi|254718615|ref|ZP_05180426.1| Cell division protein FtsJ [Brucella sp. 83/13]
 gi|265983592|ref|ZP_06096327.1| hemolysin A [Brucella sp. 83/13]
 gi|306839867|ref|ZP_07472665.1| hemolysin A [Brucella sp. NF 2653]
 gi|264662184|gb|EEZ32445.1| hemolysin A [Brucella sp. 83/13]
 gi|306405053|gb|EFM61334.1| hemolysin A [Brucella sp. NF 2653]
          Length = 253

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLDVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|150395716|ref|YP_001326183.1| hemolysin A [Sinorhizobium medicae WSM419]
 gi|150027231|gb|ABR59348.1| hemolysin A [Sinorhizobium medicae WSM419]
          Length = 251

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KLL   +   +  S +  +D+G+S G +++V  +   ++     V    I 
Sbjct: 63  QDYVSRAALKLLTALDHFGLDPSEQTCLDVGASTGGFTEVLLKRGAAHVVAVDVGHGQIH 122

Query: 105 D-MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMA 144
             +     V   +     L++    R  IG      ++SD++
Sbjct: 123 PRVAEDPRVTNIEG----LNARSMTRDDIGERAVTFIVSDVS 160


>gi|294012545|ref|YP_003546005.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
 gi|292675875|dbj|BAI97393.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
          Length = 391

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 22/136 (16%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILGVKFFKFD 118
               ++DL +  G  +   A    +      ++A D        +       G  F +  
Sbjct: 199 PGMTVIDLCAGAGGKTLALA---AAMGGKGVLIAADTIRSRLARLDPRADRAGATFIETL 255

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC------EAA-----TF 167
            LD        +++ G  D+VL D      G  + +      L        AA       
Sbjct: 256 LLDQGHEAGALESLKGRADVVLVDAPCSGTGTWRRNPEARWRLTPARLDRLAAEQARILD 315

Query: 168 FALEMLNIGGDFLVKT 183
           FA  +L  GG  +   
Sbjct: 316 FAAPLLAPGGALIYAV 331


>gi|295091132|emb|CBK77239.1| tRNA and rRNA cytosine-C5-methylases [Clostridium cf.
           saccharolyticum K10]
          Length = 479

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 44/165 (26%), Gaps = 28/165 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQV-AARITGSN--------ANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  +   A+R+ G              R+++ +   M    G     
Sbjct: 90  KPGDRVLDLCAAPGGKTSHIASRLQGKGFLLSNEIHPARARILSQNAERMGIANGAV--- 146

Query: 117 FDFLDLDSW---EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TF 167
             F +  +     F         D   S                +  +   A        
Sbjct: 147 --FNEDSARLSAAFPEYFDKIVVDAPCSGEGMFRKDEGARAEWSSDKVRLCAQRQAEILE 204

Query: 168 FALEMLNIGGDF---LVKTFQGGTTNDILCLLKKH--FQKVIHVK 207
            A  ML  GG                 +   LK H  F+     K
Sbjct: 205 NASAMLKPGGTMAYSTCTFSPEEDEQAVEAFLKAHPEFKIKKVKK 249


>gi|229904920|ref|YP_002884239.1| polyprotein precursor [Quang Binh virus]
 gi|229270301|gb|ACQ55297.1| polyprotein precursor [Quang Binh virus]
          Length = 3359

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 36   DPY----VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D Y    V       + +R   K+ ++  K+Q  +     VDLG   G WSQ     +  
Sbjct: 2497 DQYRSRGVNETDKGDYVSRGGLKMDELLRKYQ-WEPKGVAVDLGCGRGGWSQRLVMDSRI 2555

Query: 92   NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            +A +   +  +  +       K      L       +      + + ++ D+        
Sbjct: 2556 SAVHGFTLGGNNRENPQPFRTKGHNLATLKAGVD--VYAEPPKDCNTIVCDIGESDS-RG 2612

Query: 152  KIDHLRTMSLCEAATFFALEML--NIGGDFLVKT---FQGGTTNDILCLLKKHFQKVIHV 206
             ++  RT            + L  N    F  K    +       +  L  K+  +V+ +
Sbjct: 2613 DVERTRT----LKVLGLLEKWLEHNPNAAFACKVLSPYHIEVLRKLETLQHKYGGRVVRL 2668

Query: 207  KPVASRAESVEMFLL 221
                SR  + EM+ +
Sbjct: 2669 --SYSRNSTAEMYYI 2681


>gi|258405362|ref|YP_003198104.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797589|gb|ACV68526.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfohalobium
           retbaense DSM 5692]
          Length = 683

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 31/189 (16%)

Query: 26  SRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           S  W  R   D  +  AQ   +R R   +L         L+   R++++G   G ++  A
Sbjct: 428 SCAWFER--PDFSLSEAQEAKYR-RVCERLE--------LKPGDRVLEIGCGWGGFALFA 476

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVK------------FFKFDFLDLD-SWEFIRQAI 132
           AR  G      RV  + I D +                  F++ D+ D++  ++ I    
Sbjct: 477 ARHYG-----CRVDGVTISDNQYSFACNAARDLGLTHLVAFYRMDYRDIENRYDKIVSIE 531

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF--FALEMLNIGGDFLVKTFQGGTTN 190
                      A+     R +     + L   A +       L  G       F GG   
Sbjct: 532 MFEAVGHAYHKAFFAALDRLLVPEGQVFLQFIAIYDQRYEAYLREGDWIRKHIFPGGLLP 591

Query: 191 DILCLLKKH 199
            +   L+  
Sbjct: 592 SLARTLEAM 600


>gi|87122427|ref|ZP_01078307.1| hypothetical protein MED121_19861 [Marinomonas sp. MED121]
 gi|86162220|gb|EAQ63505.1| hypothetical protein MED121_19861 [Marinomonas sp. MED121]
          Length = 401

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF--DFLDL 122
               +R++D+ S  G W   AA    S+          +  +E  L +  ++   + +  
Sbjct: 219 FSPGKRVLDVFSYVGGWGVQAASAGASDVTFIDASEKALGHVESNLTMNQYEGNANLMQG 278

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           D++E ++  I       +  +  P    R+ D     S    A   A+ ++  GG  +  
Sbjct: 279 DAFESMQSLIDDKQRFDVVVIDPPAFITRRKDTKAGESAYYRANQLAMRLVAKGGTLVTA 338

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
           +       + L  + +            S + S+E F
Sbjct: 339 SCSMHLKEEKLHEIVR------------SNSRSLERF 363


>gi|225376928|ref|ZP_03754149.1| hypothetical protein ROSEINA2194_02570 [Roseburia inulinivorans DSM
           16841]
 gi|225211249|gb|EEG93603.1| hypothetical protein ROSEINA2194_02570 [Roseburia inulinivorans DSM
           16841]
          Length = 302

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLDSWEF 127
           ++++ +G +    S ++  +  ++     V   D+   +  I GV +   DF D  + E 
Sbjct: 3   KKVLVIGGAGFIGSNLSRHLIKNDME---VYCFDMSKPVHEIAGVNYICGDFFDDYTLEH 59

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHL-----RTMSLCEAATF--FALEMLNIGGD 178
             + +       LS +       + +        +T  LC+  T     +  L+ GG 
Sbjct: 60  ALEGMDYVVH-ALSTVNPGNSNEKYLQGYERDFIQTTKLCKMITDQKIRMIFLSSGGT 116


>gi|145243998|gb|ABP48914.1| lambda2 [Mammalian orthoreovirus 3]
 gi|299013484|gb|ADJ00317.1| lambda-2 protein [Mammalian orthoreovirus 3 Dearing]
          Length = 1289

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFD 118
             L+S + +   G+S G           S A+   V+       I  + P   V+ F +D
Sbjct: 504 GYLRSGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYD 553

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
                  +  R    G+   V SD+     GH  +    +  L E+     +     GG 
Sbjct: 554 VARGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLSSCMHATAPGGS 611

Query: 179 FLVKT-FQGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           F+VK  F        +   +  +    + +KP  +   +VE+F +A G
Sbjct: 612 FVVKINFPTRPVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|242802328|ref|XP_002483949.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218717294|gb|EED16715.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 375

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 34/136 (25%)

Query: 53  YKLLQINEKHQIL------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           Y+LLQ     ++           R++D+G+  G W      +       + ++  D+  +
Sbjct: 77  YRLLQ----DRLFLAPIDPNHGLRVLDIGTGTGVWP---VDLGDQFPGASLILGNDLSPI 129

Query: 107 EP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           +P      VKF   D          +Q     P                   ++      
Sbjct: 130 QPRFVPPNVKFIIDDV--------EQQWTESQPFDYTHCRYMAGSIRNWSRLIQQ----- 176

Query: 164 AATFFALEMLNIGGDF 179
                  E L  GG  
Sbjct: 177 -----CFENLKPGGWL 187


>gi|218296418|ref|ZP_03497161.1| hemolysin A [Thermus aquaticus Y51MC23]
 gi|218243212|gb|EED09743.1| hemolysin A [Thermus aquaticus Y51MC23]
          Length = 235

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E +  R AYKLL   E   I  + +   DLG+S G ++QV      S     RV A+D+
Sbjct: 53  EERYVGRGAYKLLGALEAFPIALAGKVAADLGASTGGFTQVLLERGAS-----RVYAVDV 107


>gi|323358624|ref|YP_004225020.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323274995|dbj|BAJ75140.1| predicted rRNA methylase [Microbacterium testaceum StLB037]
          Length = 265

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 35 NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           D  ++ A  + + +R A+KLL   +  ++  + R  +DLG+S G ++QV    
Sbjct: 45 TDSVIEVASPDHYVSRGAHKLLAALDAFEVDVAGRVALDLGASTGGFTQVLRER 98


>gi|226943505|ref|YP_002798578.1| methyltransferase [Azotobacter vinelandii DJ]
 gi|259491280|sp|C1DQT0|CMOA_AZOVD RecName: Full=tRNA (cmo5U34)-methyltransferase
 gi|226718432|gb|ACO77603.1| methyltransferase [Azotobacter vinelandii DJ]
          Length = 247

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 57/203 (28%), Gaps = 63/203 (31%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
           Q  +   R+ DLG S G+ SQ   R   S     RV+A+D                    
Sbjct: 53  QFARPGTRLYDLGCSLGAVSQALRRHVKSEGC--RVIAVDNSP----------------- 93

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM---------- 172
              E  R+ +     +    +         I  L        A  F L+           
Sbjct: 94  AMLERCREYLHAQDSMFQE-LLPVETVEADILALALEPASLVAMNFTLQFIPPERRLELL 152

Query: 173 ------LNIGGDFL--VKT-FQGGTTNDILCLLKKHFQKV----------------IHVK 207
                 L  GG  +   K  F     + +L  L   F++                   +K
Sbjct: 153 GHIHHSLLPGGALILSEKLRFSDAEEHGLLGDLHLAFKRANGYSELEIAQKRSAIENVMK 212

Query: 208 PVA---SRAESVEMFLLAKGFRK 227
           P +    R       LLA GFRK
Sbjct: 213 PDSLEEHRQR-----LLAAGFRK 230


>gi|242213454|ref|XP_002472555.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728349|gb|EED82245.1| predicted protein [Postia placenta Mad-698-R]
          Length = 417

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK--------FDFLD 121
           R +DLG SPG +S    +           +  +       +   F           D +D
Sbjct: 129 RFLDLGCSPGGFSSWLLKNNPGVEGVGITLPDERSQFPLQIDPAFLTIGKYQVRYADIID 188

Query: 122 LDSWE---------FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           + S             + ++    DLV++  A+PT+        RT  L  A  F  +  
Sbjct: 189 IVSVSPGDGALPIIESKHSLRQPYDLVIA-GAFPTMQDSTPWGYRT-QLLVAQVFLIIAN 246

Query: 173 LNIGGD--FLVKTFQGGTTNDILCLLKKHFQKVIHVKP---VASRAESVEMFLLAKGF 225
              GG    L+KT       DI+ LL++ F  +   K     A R+     +L+ +GF
Sbjct: 247 TAPGGSAIVLIKTKPILLHLDIIGLLRQAFDSISAHKAGKLHAVRSS---CYLVCRGF 301


>gi|255953451|ref|XP_002567478.1| Pc21g04320 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589189|emb|CAP95329.1| Pc21g04320 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 373

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 25/181 (13%)

Query: 55  LLQINEKHQILQSNRRIVD--LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV 112
           LL+I  K        R +   L  S G +    A    SN N  RV  +D+  +   +GV
Sbjct: 130 LLEIALKRN---PGARALAFSLPVSCGGYKTSLA----SNLNTKRVF-LDLTMLAADMGV 181

Query: 113 KFFKFDFLDLDSWEFIRQAI--GGNPDLVLSDM----AYPTIGHRKIDHLRTMSLCEAAT 166
                     D+  F+ Q +  G   DLV+ D      + +  + +    R +++ + A 
Sbjct: 182 DQIPE--GHEDAENFLPQQLEEGQLFDLVICDGPVLRQHSSAPYGESQGARRVAITQLAL 239

Query: 167 FFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPVASR-AESVEMFLLAK 223
               + L  GG  +V     +   T + +    K    V   KP +     S   +++A 
Sbjct: 240 GL--QHLRPGGTMIVLLHRLETWNTVNPIWEFHKI-SSVRLFKPKSCYTKRST-FYMVAT 295

Query: 224 G 224
            
Sbjct: 296 N 296


>gi|46581315|ref|YP_012123.1| hemolysin A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601504|ref|YP_965904.1| hemolysin A [Desulfovibrio vulgaris DP4]
 gi|46450736|gb|AAS97383.1| hemolysin A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561733|gb|ABM27477.1| hemolysin A [Desulfovibrio vulgaris DP4]
 gi|311234978|gb|ADP87832.1| hemolysin A [Desulfovibrio vulgaris RCH1]
          Length = 253

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 29/144 (20%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID- 102
            E + +R AYKLL   +  +   +    +D G+S G ++    +         RV A+D 
Sbjct: 65  RERFVSRGAYKLLTAIDYFKFDVTGFVALDAGASTGGFTDCLLQ-----HGAVRVYAVDV 119

Query: 103 -----ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
                   M+    V   +   L     + I +      D+V++D+++            
Sbjct: 120 GHGQLHERMQADPRVVNLERTNLRTAPADLIPE----QVDIVVADVSF------------ 163

Query: 158 TMSLCEAATFFALEMLNIGGDFLV 181
            +SL        ++ L  GG  + 
Sbjct: 164 -ISLTL-VLEPCMQWLKPGGRVVA 185


>gi|296124487|gb|ADG95886.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIYTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSNF 1304


>gi|110834423|ref|YP_693282.1| putative RNA 2'-O-ribose methyltransferase [Alcanivorax borkumensis
           SK2]
 gi|123149434|sp|Q0VP88|RLMM_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|110647534|emb|CAL17010.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 353

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 47  WRARSAYKLLQINEKH---QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
             +RSA K+ +   +        + +  VDLG++PG WS   AR         RV A+D 
Sbjct: 182 APSRSALKVEEALIRFFGSADALNAKTAVDLGAAPGGWSWQLARR------GIRVQAVDH 235

Query: 104 LDMEP----ILGVKFFKFD 118
             M P       V+    D
Sbjct: 236 GKMAPRLLDEYPVQHVYGD 254


>gi|187607718|ref|NP_001119843.1| probable methyltransferase C20orf7 homolog, mitochondrial precursor
           [Rattus norvegicus]
 gi|221271966|sp|B2GV71|CT007_RAT RecName: Full=Probable methyltransferase C20orf7 homolog,
           mitochondrial; Flags: Precursor
 gi|183986076|gb|AAI66551.1| RGD1309829 protein [Rattus norvegicus]
          Length = 343

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 28/197 (14%)

Query: 2   VKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           V P GS+S R L   + +R  +   ++W  R          + E   +R A      +  
Sbjct: 33  VPPSGSTSPRALN--IFDRELKRKQKNWAARQPEPMKFDYLKEE-IGSRIA------DRV 83

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF-L 120
           + I +     +D+G   G  +Q   +         ++   DI +          K     
Sbjct: 84  YDIARDFPLALDIGCGRGYIAQHLNK-----ETVGKIFQTDIAE-------HALKNSIET 131

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D+ +   +             D+   ++    ++          A      +L   G F+
Sbjct: 132 DIPTVNILADEEFLPFPENTFDLVVSSLSLHWVND------LPRALEQIHYVLKPDGVFV 185

Query: 181 VKTFQGGTTNDILCLLK 197
              F G T  ++ C L+
Sbjct: 186 GAMFGGDTLYELRCSLQ 202


>gi|306842278|ref|ZP_07474940.1| hemolysin A [Brucella sp. BO2]
 gi|306287586|gb|EFM59037.1| hemolysin A [Brucella sp. BO2]
          Length = 253

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL+   +   +    R  +D+G+S G ++QV       +     V+AID+
Sbjct: 66  YVSRAALKLVAALDHFDLDVKGRTALDIGASTGGFTQVLLERGAHH-----VIAIDV 117


>gi|254496487|ref|ZP_05109362.1| SAM-dependent methyltransferase [Legionella drancourtii LLAP12]
 gi|254354285|gb|EET12945.1| SAM-dependent methyltransferase [Legionella drancourtii LLAP12]
          Length = 304

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 12/100 (12%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILGVKFFKFDFL- 120
           QS    +DLG+SPG W+         ++    V A+D   ++P    + GV   +     
Sbjct: 167 QSGDLALDLGASPGGWT------YVMHSLGAHVTAVDKAPIDPNIAKLPGVNSIQQSAFA 220

Query: 121 -DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
            +  + E   + +  +            +        + M
Sbjct: 221 IEPATLEQTYEWVLSDVACYPERAYALIMKWIASGKAKQM 260


>gi|222085093|ref|YP_002543623.1| hemolysin A [Agrobacterium radiobacter K84]
 gi|221722541|gb|ACM25697.1| hemolysin A [Agrobacterium radiobacter K84]
          Length = 246

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
           INDP       + + +R+A KL+   +  ++    +  +D+G+S G +++V        A
Sbjct: 54  INDP------AQDYVSRAALKLVAALDHFELDPKGQHCLDVGASTGGFTEVLLLR---GA 104

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
            +   + +    M P +           L++     + IG     ++SD++
Sbjct: 105 EHVTAIDVGHGQMHPRISADPRVTSMEGLNARNLTAEDIGKPFTFLVSDVS 155


>gi|88855477|ref|ZP_01130141.1| hemolysin [marine actinobacterium PHSC20C1]
 gi|88815384|gb|EAR25242.1| hemolysin [marine actinobacterium PHSC20C1]
          Length = 264

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A+ + + +R+A+KL+   +   I  +    +D+G+S G ++QV             V+A+
Sbjct: 54  AETDHYVSRAAHKLVAALDSFGIDATGTLALDVGASTGGFTQVLLERGARE-----VIAL 108

Query: 102 DI 103
           D+
Sbjct: 109 DV 110


>gi|83765398|dbj|BAE55541.1| unnamed protein product [Aspergillus oryzae]
          Length = 351

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 25/127 (19%)

Query: 64  ILQSNRRIVDLGSSPGSW----SQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFK 116
           I    +R++DLG+  G W    ++    I  S   + +V+  D+  ++P        F  
Sbjct: 106 IKNDVQRVLDLGTGTGIWAIDFAEYVHGIDPSEHPSAQVIGTDLSPIQPRWVPPTCSF-- 163

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                 +  +F    +   P   +            +   +           A + L  G
Sbjct: 164 ------EIDDFECDWLYTRPFDFIHARELEGCIGNDLKFFKQ----------AFKHLVPG 207

Query: 177 GDFLVKT 183
           G F V+ 
Sbjct: 208 GYFEVQA 214


>gi|295105557|emb|CBL03101.1| ribosomal RNA small subunit methyltransferase RsmB
           [Faecalibacterium prausnitzii SL3/3]
          Length = 443

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 13/127 (10%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVKFFKFD 118
               ++DL ++PG  + + A             A +          D     GV     D
Sbjct: 248 PGETVLDLCAAPGGKTILLAEQMQGTGELYSCDAAENRVGLIRTAVDRMGFTGVHTLCND 307

Query: 119 FLDLD-SWEFIRQAIGGNPDLVLSDMA-YPTIGHRKIDHLRTMSLC---EAATFFALEML 173
               + +     + +   P   L  +A  P + ++K++  R   L     A    A  +L
Sbjct: 308 ATKPNPALPMADRILTDVPCSGLGILAKKPDLRYKKLEAARQAELLATQAAILDTAAALL 367

Query: 174 NIGGDFL 180
             GG  +
Sbjct: 368 KAGGRLV 374


>gi|160945218|ref|ZP_02092444.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442949|gb|EDP19954.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
           M21/2]
          Length = 443

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 13/127 (10%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL--------DMEPILGVKFFKFD 118
               ++DL ++PG  + + A             A +          D     GV     D
Sbjct: 248 PGETVLDLCAAPGGKTILLAEQMQGTGELYSCDAAENRVGLIRTAVDRMGFTGVHTLCND 307

Query: 119 FLDLD-SWEFIRQAIGGNPDLVLSDMA-YPTIGHRKIDHLRTMSLC---EAATFFALEML 173
               + +     + +   P   L  +A  P + ++K++  R   L     A    A  +L
Sbjct: 308 ATKPNPALPMADRILTDVPCSGLGILAKKPDLRYKKLEAARQAELLATQAAILDTAAALL 367

Query: 174 NIGGDFL 180
             GG  +
Sbjct: 368 KAGGRLV 374


>gi|320594156|gb|EFX06559.1| methyltransferase type 12 [Grosmannia clavigera kw1407]
          Length = 394

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 20/119 (16%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFL 120
           + +   R++DLG+  GSW    A           ++  DI  ++P      VK   F  +
Sbjct: 148 LKEPIERVLDLGTGTGSW----AIDFADAHPEAEIIGTDISPIQPTWVPPNVKLCYFSMI 203

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           D  +  ++      + D +       T+   K    +           A   L  GG  
Sbjct: 204 DDFNKPWL--FPENHFDFIHIRWVPGTVHDWKWLFEQ-----------AYRTLKPGGWL 249


>gi|302887024|ref|XP_003042401.1| hypothetical protein NECHADRAFT_72681 [Nectria haematococca mpVI
           77-13-4]
 gi|256723311|gb|EEU36688.1| hypothetical protein NECHADRAFT_72681 [Nectria haematococca mpVI
           77-13-4]
          Length = 340

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 25/114 (21%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLD 123
             +R++DLG+  G W    A           V+ ID+   +P      V+F   D  +  
Sbjct: 102 KVKRVLDLGTGTGIW----ALDYADEHPEAEVIGIDLSPTQPEFVPPNVQFIVDDIDE-- 155

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                 +     P   +             D+LR +           E L  GG
Sbjct: 156 ------EWSYSKPFDYIHSRMMNISVGNWKDYLRQIY----------ENLEPGG 193


>gi|303310221|ref|XP_003065123.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240104783|gb|EER22978.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320033993|gb|EFW15939.1| methyltransferase [Coccidioides posadasii str. Silveira]
          Length = 348

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 23/130 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           +++ +R++D+G+  G W                +V  D+  ++P      +KF+  DF  
Sbjct: 108 IKAPQRVLDIGTGTGIWPIE----FADEFPAALIVGTDLSPIQPSFVPPNLKFYVDDF-- 161

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            + W+F                +            R           A E L  GG   V
Sbjct: 162 EEPWDFGEDKKFDYVHWRSLCGSTNN----WAKLYRQ----------AFENLKPGGWLEV 207

Query: 182 KTFQGGTTND 191
           + +     +D
Sbjct: 208 QEYDAWIFSD 217


>gi|121601957|ref|YP_988720.1| hemolysin A [Bartonella bacilliformis KC583]
 gi|120614134|gb|ABM44735.1| hemolysin A [Bartonella bacilliformis KC583]
          Length = 250

 Score = 39.5 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 16/107 (14%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL+   +   ++ +    +D+G+S G ++QV      S+     V+A+D+ 
Sbjct: 59  QNYVSRAALKLIGALDAFPVVTTQVIALDIGASTGGFTQVLLERGASH-----VIAVDVG 113

Query: 105 DMEPIL------GVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMA 144
             +          V   +     L+  +  ++ +GG   DL++SD++
Sbjct: 114 HNQFDACLSNNSAVTLLEG----LNVRDLRQEHLGGREIDLIVSDVS 156


>gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           D5]
 gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
           D5]
          Length = 451

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQV-AARITGSNANNTR--------VVAIDILDMEPILGVKFFK 116
           +    I+D+ ++PG  S   A R++G+   + R        ++  +I  M+ +  +   +
Sbjct: 253 KQGDYIIDVCAAPGGKSIHLADRLSGTGHVDARDLTEYKTSLIRDNIDRMQ-MKNISAVQ 311

Query: 117 FD--FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA---TFFALE 171
            D   LD  S E     I   P   L  +   T    +    +T  L             
Sbjct: 312 MDASVLDAASVEKADIVIADLPCSGLGVLGRKTDLKYRTTEKQTEELVLLQRKILDVVCS 371

Query: 172 MLNIGGDFL 180
            +  GG  L
Sbjct: 372 YVKPGGVLL 380


>gi|322833490|ref|YP_004213517.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rahnella sp. Y9602]
 gi|321168691|gb|ADW74390.1| Cyclopropane-fatty-acyl-phospholipid synthase [Rahnella sp. Y9602]
          Length = 383

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA-IDILDMEPILG- 111
           KL  I +K Q L+  +R++D+G   G  S+ AAR  G +     + A    L  +   G 
Sbjct: 155 KLKMICDKLQ-LKPGQRLLDIGCGWGGLSEFAARNYGVSVVGVTISAEQQKLAQKRCEGL 213

Query: 112 -VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            V     D+ D          +    D ++S   +  +G +                 A 
Sbjct: 214 DVTILLQDYRD----------LNDQFDRIVSVGMFEHVGPKNYQTY---------FNVAK 254

Query: 171 EMLNIGGDFLVKTFQGGTTND 191
             +   G FL+ T     T+ 
Sbjct: 255 RNIKPDGIFLLHTIGSNKTDL 275


>gi|294932467|ref|XP_002780287.1| hypothetical protein Pmar_PMAR019187 [Perkinsus marinus ATCC 50983]
 gi|239890209|gb|EER12082.1| hypothetical protein Pmar_PMAR019187 [Perkinsus marinus ATCC 50983]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 69  RRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAIDI-LDME-PILGVKFFKFDFLDLDSW 125
           R  VD+GS+PG  S+     +  +  +   +   D  L+M      ++F   D  +  ++
Sbjct: 96  RVFVDIGSAPGGMSKFLLHHLHWTRGHAFSLAPEDGGLEMRYHNTSLEFECADMAESGAY 155

Query: 126 EFIRQAIGGNP-----------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
             I + +                +V+            +   +++ +C       L+ L 
Sbjct: 156 MRIAKTLESRGFKKHSIDFINLGVVIDVGQCNRDDDPYVTARKSVEVCRNQFLLMLDFLK 215

Query: 175 IGGDFL-VKTFQGGTTNDIL-CLLKKHFQKVIHV---KPVASRAESVEMFLLAKGF 225
            GG  + + +     T       L + FQ++       P  SR+    ++ +A+ F
Sbjct: 216 PGGSCMWIHSGSHLDTYLFYLNWLNRMFQRLRVTNTLVP--SRSP---VYTIAENF 266


>gi|291301661|ref|YP_003512939.1| methyltransferase type 12 [Stackebrandtia nassauensis DSM 44728]
 gi|290570881|gb|ADD43846.1| Methyltransferase type 12 [Stackebrandtia nassauensis DSM 44728]
          Length = 279

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 31/157 (19%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQINEKH------QILQSNRR-IVDLGSSPGSWSQVAA 86
            ND +V  A+     A++A    Q + +       ++L+ + R  VD G   G  +    
Sbjct: 2   SNDGFVWSAEASDL-AKAA----QSDGEFYRLMAAELLRPDDRLAVDFGCGGGGMALALR 56

Query: 87  RITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
                    TRVV +D  +            + F    F   DS E +R A GG PDLV 
Sbjct: 57  DRAAETGQATRVVGLDAHEEVFTTVAADNPDLGFAVASF--EDSPEQLRAAAGGAPDLVW 114

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           +  A       ++           A     E+L  GG
Sbjct: 115 ARGALHHADDEQV-----------ALRTLAEVLADGG 140


>gi|320166054|gb|EFW42953.1| hypothetical protein CAOG_08085 [Capsaspora owczarzaki ATCC 30864]
          Length = 911

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 19/152 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           ++DLG   G+    A  +   N   + + A+ + +++    V     DF    +   + +
Sbjct: 676 VLDLGCGSGNVGLAAILMGARNVIFSDIDAMYLPEIQNNPLVIVGDHDF---QAQSLVSE 732

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMS-LCEAAT-----------FFALEMLNIGG- 177
            +     L   D+   +     ++   +    C +A              A ++L   G 
Sbjct: 733 TLKKADKLEKYDVLMMSTPTFNMEETDSADANCTSALFQSKQFLRDLIDQAGQILKYSGD 792

Query: 178 ---DFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
               F+   FQ  T    L   K HF      
Sbjct: 793 LVIWFMFANFQPATITTFLNFFKGHFDVHEVA 824


>gi|78358021|ref|YP_389470.1| hemolysin A [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220426|gb|ABB39775.1| hemolysin A [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 249

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R AYKLL   E   +       +D G+S G ++    +         RV A+D+     
Sbjct: 67  SRGAYKLLTAIETFGLDVQGMVALDAGASTGGFTDCLLQ-----HGAARVYAVDV----- 116

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID-HLRTMSLCEAATF 167
             G          + S   +    G N      D+    +     D    +++L   A  
Sbjct: 117 --GKNQLHE---RMRSDSRVVSMEGVNLRTAPDDLLPEQVDIIVADVSFISLTLILPA-- 169

Query: 168 FALEMLNIGG 177
             L  L  GG
Sbjct: 170 -CLRFLRKGG 178


>gi|116619153|ref|YP_821309.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222315|gb|ABJ81024.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 246

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 36/139 (25%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-------MEPILGVKFFKF 117
           L     ++D+    G  +  AAR    +    RV+ +D+          + +   +F   
Sbjct: 41  LSPGAIVLDVCCGAGGSAIPAARAVAPSG---RVIGVDLAPGLLNLARAKAVPNAEFRHA 97

Query: 118 DF----LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           DF        +++ +    G        DM+                   AA       L
Sbjct: 98  DFEQVYFRPATFDAVVCVFGI---FFFEDMS-------------------AALQKMWRFL 135

Query: 174 NIGGDFLVKTFQGGTTNDI 192
             GG   +  +       +
Sbjct: 136 RPGGTLAITVWGPSAFAPL 154


>gi|156030693|ref|XP_001584673.1| hypothetical protein SS1G_14442 [Sclerotinia sclerotiorum 1980]
 gi|154700833|gb|EDO00572.1| hypothetical protein SS1G_14442 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 494

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 69/257 (26%)

Query: 26  SRDWL-NRHINDPYVQRAQLEGWRA--------RSAYKLL-----QINEKHQIL-----Q 66
           SR W  N+   D + ++ +    RA        RS Y+++     +++  H I       
Sbjct: 90  SRGWHDNKEEGDEHFRQQRK---RADSTTPEEERSFYRMMQQIGDEMHRSHHIFTIPFVP 146

Query: 67  SNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAID----------ILDMEPILGVKFF 115
             +  I+DL  +PG ++  A     S+ +  +   I           I+D   + G++F 
Sbjct: 147 DGQVNILDLCMAPGGYTAAAL----SHRSGFKAYGITLAPESGGHTVIIDKNRLQGLRF- 201

Query: 116 KFDFL--------DLDSWEFIRQAIGG-------NPDLVLSDMAYPTIGHRKIDHL---- 156
             D          D D  E  R               LV +D        R  D      
Sbjct: 202 -HDITMYKEFCPSDKDIPECFRSRFSDVRPFKSIKYHLVFADGKTLRTHDRIKDIYDANL 260

Query: 157 --RTMSLCEAATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKP---V 209
              T+ L  +    A+  ++ GG  ++         +  +L    K F  +   KP    
Sbjct: 261 NKETVRLQTSQLILAMNRIHNGGTLVMLLHKVDAWHSAFLLYTFSK-FADIEVFKPVKKH 319

Query: 210 ASRAESVEMFLLAKGFR 226
           A+R+     +++AK  R
Sbjct: 320 ATRSSF---YMIAKNIR 333


>gi|73749105|ref|YP_308344.1| arsenite S-adenosylmethyltransferase [Dehalococcoides sp. CBDB1]
 gi|289433081|ref|YP_003462954.1| methyltransferase type 11 [Dehalococcoides sp. GT]
 gi|73660821|emb|CAI83428.1| SAM-dependent methyltransferase UbiE/COQ5 family [Dehalococcoides
           sp. CBDB1]
 gi|288946801|gb|ADC74498.1| Methyltransferase type 11 [Dehalococcoides sp. GT]
          Length = 278

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 24/120 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           ++    ++DLGS  G    +A+   G      +V+ +D+   M  I     F+  + ++ 
Sbjct: 72  IKEGETVLDLGSGGGFDCFLASPRVGEKG---KVIGVDMTPQMLSIAKRNAFQGGYTNV- 127

Query: 124 SWEFIRQAIGGNP------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             EFI+  I   P      DL++S+        +            A    A+ +L  GG
Sbjct: 128 --EFIQGEIENLPLEANSIDLIISNCVINLSPDKP-----------AVFKEAMRVLKPGG 174


>gi|147669867|ref|YP_001214685.1| arsenite S-adenosylmethyltransferase [Dehalococcoides sp. BAV1]
 gi|146270815|gb|ABQ17807.1| Methyltransferase type 11 [Dehalococcoides sp. BAV1]
          Length = 277

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 24/120 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           ++    ++DLGS  G    +A+   G      +V+ +D+   M  I     F+  + ++ 
Sbjct: 71  IKEGETVLDLGSGGGFDCFLASPRVGEKG---KVIGVDMTPQMLSIAKRNAFQGGYTNV- 126

Query: 124 SWEFIRQAIGGNP------DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
             EFI+  I   P      DL++S+        +            A    A+ +L  GG
Sbjct: 127 --EFIQGEIENLPLEANSIDLIISNCVINLSPDKP-----------AVFKEAMRVLKPGG 173


>gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
           1_1_55]
 gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
           1_1_55]
          Length = 431

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++ + ++  RI+DL ++PG  +     +    A   +V+A+DI +          K   +
Sbjct: 240 RYLLPENGERILDLCAAPGGKTTHILEV----APQAQVMAVDIDEQRLSRVYDNLKRLGM 295

Query: 121 DLDSWE---FIRQAIGGNPDLVLSDMAYPTIG-------------HRKIDHLRTMSLCEA 164
             +  +      +   GN       +  P                 R  D      L   
Sbjct: 296 KAEVKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAE 355

Query: 165 ATFFALEMLNIGGDFL 180
                 E L  GG  +
Sbjct: 356 ILNATWEHLKPGGTLV 371


>gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22]
 gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22]
          Length = 431

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           ++ + ++  RI+DL ++PG  +     +    A   +V+A+DI +          K   +
Sbjct: 240 RYLLPENGERILDLCAAPGGKTTHILEV----APQAQVMAVDIDEQRLSRVYDNLKRLGM 295

Query: 121 DLDSWE---FIRQAIGGNPDLVLSDMAYPTIG-------------HRKIDHLRTMSLCEA 164
             +  +      +   GN       +  P                 R  D      L   
Sbjct: 296 KAEVKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAE 355

Query: 165 ATFFALEMLNIGGDFL 180
                 E L  GG  +
Sbjct: 356 ILNATWEHLKPGGTLV 371


>gi|254785278|ref|YP_003072706.1| RNA 2'-O-ribose methyltransferase [Teredinibacter turnerae T7901]
 gi|269969535|sp|C5BR43|RLMM_TERTT RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|237686106|gb|ACR13370.1| RNA 2'-O-ribose methyltransferase, RrmJ family [Teredinibacter
           turnerae T7901]
          Length = 350

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 25/102 (24%)

Query: 47  WRARSAYKLLQINEKHQILQ---------SNRRIVDLGSSPGSWS-QVAARITGSNANNT 96
             +R+  KL +    H  +           + + VDLG++PG W+ Q+ AR    +A + 
Sbjct: 180 APSRATLKLEE--AWHHFIPASEWDTRLAPSMKAVDLGAAPGGWTWQLVARSMFVDAVDN 237

Query: 97  RVVA-------------IDILDMEPILGVKFFKFDFLDLDSW 125
             +A             +D     P   V +   D  D  + 
Sbjct: 238 GPMAPTLMEGGQVTHRQVDGFAYHPPKPVDWLVCDIADKPAR 279


>gi|269792808|ref|YP_003317712.1| Methyltransferase type 11 [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100443|gb|ACZ19430.1| Methyltransferase type 11 [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 248

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 21/175 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--------EPILG----V 112
           L+ N + +++G + G  S +  +   +   N RVV IDI             + G    V
Sbjct: 39  LKGNLKALEVGCAHGILSLMLIQRARALGANLRVVGIDIQPQLVEMAMRNRDLHGMTDQV 98

Query: 113 KFFKFDFLDL----DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
           +F   D ++L    +   F         +   S    P        H  + +L E     
Sbjct: 99  RFIPMDLMELKGSWEEAPFDLVVCNPPYEDPGSGRPSPRGPVALAVHRMSFTL-EDLFLR 157

Query: 169 ALEMLNIGGDF--LVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
           + ++L   G F  ++++ + G   D++   +   +++  V P   RA S  +FL+
Sbjct: 158 SGKVLRPKGRFFMVMRSHRMGECLDLMRRHRLEPKRLRMVHPKPGRAAS--VFLV 210


>gi|229046931|ref|ZP_04192561.1| hypothetical protein bcere0027_29430 [Bacillus cereus AH676]
 gi|228724409|gb|EEL75736.1| hypothetical protein bcere0027_29430 [Bacillus cereus AH676]
          Length = 415

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VDL  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDLCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEATVSPYKP 291


>gi|73958203|ref|XP_852066.1| PREDICTED: similar to Mitotic spindle assembly checkpoint protein
           MAD1 (Mitotic arrest deficient-like protein 1)
           (MAD1-like 1) (Mitotic checkpoint MAD1 protein-homolog)
           (HsMAD1) (hMAD1) (Tax binding protein-181) [Canis
           familiaris]
          Length = 833

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 143 MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           MA    G   +DH R + LC      A ++L+ GG 
Sbjct: 1   MAPNATGIHSLDHDRLIRLCLFLLDLAADVLHPGGT 36


>gi|328955191|ref|YP_004372524.1| hypothetical protein Corgl_0595 [Coriobacterium glomerans PW2]
 gi|328455515|gb|AEB06709.1| hypothetical protein Corgl_0595 [Coriobacterium glomerans PW2]
          Length = 275

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAARITGSNANNT 96
           ++A   GWR     +L+++ E+   L++      + DL      + +       S     
Sbjct: 28  RQAPWPGWR-----RLIELIEEDLSLRAAGASLSVFDLACGNLRFERYLREELPSADLTF 82

Query: 97  RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
              A D       +  +  + DF+ +D  + +          V       T+    + H+
Sbjct: 83  --HAWDSCTQLARVTAETPRVDFVRIDVLDALMNPSCAPCCTVAGPTCDLTVCFGFMHHV 140

Query: 157 RTMSLCEAATFFALEMLNIGG 177
             M L EA     +E    GG
Sbjct: 141 PGMRLREAVIDLLIERTRPGG 161


>gi|322831575|ref|YP_004211602.1| RNA 2'-O-ribose methyltransferase [Rahnella sp. Y9602]
 gi|321166776|gb|ADW72475.1| putative RNA 2'-O-ribose methyltransferase [Rahnella sp. Y9602]
          Length = 368

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMYAVDLGACPGGWTYQLTQR------SMMVT 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|325112743|gb|ADY80533.1| lambda2 [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L+S + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRSGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 556 RGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLSSCMHATAPGGSFV 613

Query: 181 VKT-FQGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           VK  F        +   +  +    + +KP  +   +VE+F +A G
Sbjct: 614 VKINFPTRPVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|325112723|gb|ADY80523.1| lambda2 [Mammalian orthoreovirus 3]
          Length = 1289

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           L+S + +   G+S G           S A+   V+       I  + P   V+ F +D  
Sbjct: 506 LRSGQSVAYFGASAG----------HSGADQPLVIEPWIQGKISGVPPPSSVRQFGYDVA 555

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 556 RGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLLSSCMHATAPGGSFV 613

Query: 181 VKT-FQGGTTNDILCL-LKKHFQKVIHVKPVASRAESVEMFLLAKG 224
           VK  F        +   +  +    + +KP  +   +VE+F +A G
Sbjct: 614 VKINFPTRPVWHYIEQKILPNITSYMLIKPFVT--NNVELFFVAFG 657


>gi|218548744|ref|YP_002382535.1| cyclopropane fatty acyl phospholipid synthase [Escherichia
           fergusonii ATCC 35469]
 gi|218356285|emb|CAQ88903.1| cyclopropane fatty acyl phospholipid synthase
           (unsaturated-phospholipid methyltransferase)
           [Escherichia fergusonii ATCC 35469]
 gi|324113435|gb|EGC07410.1| cyclopropane-fatty-acyl-phospholipid synthase [Escherichia
           fergusonii B253]
 gi|325497153|gb|EGC95012.1| cyclopropane fatty acyl phospholipid synthase [Escherichia
           fergusonii ECD227]
          Length = 382

 Score = 39.5 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 42/192 (21%)

Query: 21  SCQGSSRDWL--NRHI---NDPYVQRAQLEG------WR-------ARSAYKLLQINEKH 62
           + Q   R W+    H    ND + +            W+       A+ A KL  I EK 
Sbjct: 105 NLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCAYWKDADNLEAAQQA-KLKMICEKL 163

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA-IDILDMEPILG--VKFFKFDF 119
             L+   R++D+G   G  SQ  A   G++     + A    +  E   G  V+    D+
Sbjct: 164 H-LKPGMRVLDIGCGWGGLSQYLATHYGASVVGVTISAEQQKMAQERCAGLDVEILLEDY 222

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            D          +    D ++S   +  +G +  +                  L   G F
Sbjct: 223 RD----------LNDQFDRIVSVGMFEHVGPKNYNTY---------FEVVDRNLKPDGLF 263

Query: 180 LVKTFQGGTTND 191
           L+ T     T+ 
Sbjct: 264 LLHTIGSKKTDH 275


>gi|302886185|ref|XP_003041983.1| hypothetical protein NECHADRAFT_64568 [Nectria haematococca mpVI
           77-13-4]
 gi|256722890|gb|EEU36270.1| hypothetical protein NECHADRAFT_64568 [Nectria haematococca mpVI
           77-13-4]
          Length = 335

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 27/114 (23%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           ++I+DLG+  GSW+   A +  S      VV +D+  ++P      +KF   D  D    
Sbjct: 104 QKILDLGTGTGSWAIEVADMYPS----ASVVGVDLSPIQPLWVPPNLKFVVDDIED---- 155

Query: 126 EFIRQAIGGNPDLV-LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
                 +G   + + +  ++        +               A E LN GG 
Sbjct: 156 ---SWMLGDGYEFMHMRCISPWLKDQPTVLQQ------------AYEHLNPGGW 194


>gi|254416502|ref|ZP_05030254.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176706|gb|EDX71718.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Microcoleus chthonoplastes PCC 7420]
          Length = 288

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 24  GSSRDWLN---RHINDPYV-QRAQLEGWRARSAYKLLQINEKHQIL-----QSNRRIVDL 74
            SS  W      H++  Y     + +  R R A    QI+   ++L     Q    I+D+
Sbjct: 15  ASSGLWEQVWGEHMHHGYYGPLGREKKGR-RQA----QIDLIDELLNWGNVQHAENILDV 69

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGG 134
           G   G  S   A+  G+     +V  I +  ++   G +  K   L+ +    +  A+  
Sbjct: 70  GCGIGGSSLDLAQRFGA-----QVQGITLSPVQAARGTERAKETGLEAEVEFQVADALDM 124

Query: 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
                  D  +       +   +   L E        +L  GG FL+ T+
Sbjct: 125 PFADNCFDFIWSLESGEHLPD-KQKFLAE-----CYRVLKPGGTFLMATW 168


>gi|152990876|ref|YP_001356598.1| hemolysin A [Nitratiruptor sp. SB155-2]
 gi|151422737|dbj|BAF70241.1| hemolysin A [Nitratiruptor sp. SB155-2]
          Length = 234

 Score = 39.5 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 41  RAQLEGWRARSAYKLLQ-INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           +A+   + +R+AYKL   ++        +  ++D+G+S G ++Q+            +V+
Sbjct: 50  KAKP--YVSRAAYKLKHFLDTIDASFIKDAEVLDVGASTGGFTQILCEYGAK-----KVI 102

Query: 100 AIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
           A+D+   +    +K  + + +D+ + + IR       D+V  D++
Sbjct: 103 ALDVGSGQLHPTIKSKQ-NVIDMSNTD-IRTFEHDPFDIVTCDVS 145


>gi|313124988|ref|YP_004035252.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312291353|gb|ADQ65813.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 226

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 26/124 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + +  ++DLG   G     A R         RV  +D    E     + +  D       
Sbjct: 37  EPDDVVLDLGCGSG----YAGRALRETKEAGRVYGLDGSP-EMARNAQSYTDD------- 84

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA------LEMLNIGGDF 179
           E I   +G   +L  +D          IDH+ +M     A            +L  GG F
Sbjct: 85  EKIGYLVGDFDELPFADD--------SIDHVFSMEAFYYAADPHHTLSEVARVLRPGGTF 136

Query: 180 LVKT 183
               
Sbjct: 137 FCAV 140


>gi|56419127|ref|YP_146445.1| arsenite S-adenosylmethyltransferase [Geobacillus kaustophilus
           HTA426]
 gi|56378969|dbj|BAD74877.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 264

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 18/121 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L     ++DLG   G    +AAR  G      RV+ +D+   M         K  F + +
Sbjct: 77  LNPGDVVLDLGCGAGFDCFLAARQVGETG---RVIGVDMTPEMISKARNNAAKGGFTNTE 133

Query: 124 SWEFIRQAI---GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                 + +    G+ D+++S+        +                 A  +L  GG  +
Sbjct: 134 FRLGEIEYLPVADGSVDVIISNCVINLSPDKP-----------QVFKEAYRVLKPGGRLV 182

Query: 181 V 181
           +
Sbjct: 183 I 183


>gi|85097544|ref|XP_960463.1| hypothetical protein NCU05501 [Neurospora crassa OR74A]
 gi|28921955|gb|EAA31227.1| predicted protein [Neurospora crassa OR74A]
          Length = 386

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 24/118 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           L+   +++DLG+  G W    A        +  +  +D+  ++P      V+F+  DF D
Sbjct: 145 LEKGGQVLDLGTGTGIWPTQLAESYP----DAVITGVDLSPIQPSFVPENVRFYVDDFED 200

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                          D +    A  T+  R     R M             L  GG F
Sbjct: 201 EWVDPV------NKYDYIHLRFALHTLKDRNSLMQRVM-----------RHLKPGGYF 241


>gi|307354944|ref|YP_003895995.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307158177|gb|ADN37557.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 275

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 32/124 (25%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVK 113
           L+    ++DLGS PG    +AA   G +    RV+ +D+                   V+
Sbjct: 74  LKEGETVLDLGSGPGFDCFLAANRVGKSG---RVIGVDMTPDMLKRARKNAEKGGYTNVE 130

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           F + +  DL            + D+++S+        ++           A    A  +L
Sbjct: 131 FRQGEIEDLP-------LEDCSVDVIISNCVINLSPDKQ-----------AVFNEAFRVL 172

Query: 174 NIGG 177
           + GG
Sbjct: 173 SPGG 176


>gi|303326239|ref|ZP_07356682.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
           3_1_syn3]
 gi|302864155|gb|EFL87086.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
           3_1_syn3]
          Length = 264

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 29/137 (21%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID---- 102
           + +R AYKLL I +   +  S    +D G+S G ++    +         RV A+D    
Sbjct: 77  YVSRGAYKLLTILDHFHLDVSALVCLDAGASTGGFTDCLLQR-----GAARVYAVDVGRN 131

Query: 103 --ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
                +     V   +   L     E I +A     DLV++D+++             +S
Sbjct: 132 QLHEKLRADARVVSLEGVNLRHAPPELIPEA----VDLVVADVSF-------------IS 174

Query: 161 LCEAATFFALEMLNIGG 177
           L        +  L  GG
Sbjct: 175 LTL-VLPPCMTWLKPGG 190


>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 323

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 15/144 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---------ILGVKFFK 116
           +   R++D  ++PG  +   A++  +       + +D   M           +      +
Sbjct: 123 KPGDRVLDACAAPGGKTTHLAQLMDNEGTLI-AIDVDPDRMRALKSNLARCGVANAVALR 181

Query: 117 FDFLDLDS--WEFIRQAIGGNP--DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
            + LDL S  WEF R  +      +  +             D      L        +++
Sbjct: 182 MNALDLPSTDWEFDRILLDAPCTGEGTIHKDPSRKTSRDPEDIATCARLQRRLIDAVVDV 241

Query: 173 LNIGGDFLVKTF-QGGTTNDILCL 195
           L  GG  +  T       N+++  
Sbjct: 242 LRPGGVLVYSTCTFSPEENELIVQ 265


>gi|320540754|ref|ZP_08040346.1| putative methyltransferase [Serratia symbiotica str. Tucson]
 gi|320029183|gb|EFW11270.1| putative methyltransferase [Serratia symbiotica str. Tucson]
          Length = 152

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 17/85 (20%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L S    VDLG+SPG W
Sbjct: 12  HNNSPFYMGIPRLRFPADAPSRSTLKLEEAFHVFIPADEWEERLASGMHAVDLGASPGGW 71

Query: 82  SQVAARITGSNANNTRVVAIDILDM 106
           S    +       +  V ++D   M
Sbjct: 72  SYQLVKR------SMLVHSVDNGPM 90


>gi|157369397|ref|YP_001477386.1| cyclopropane fatty acyl phospholipid synthase [Serratia
           proteamaculans 568]
 gi|157321161|gb|ABV40258.1| Cyclopropane-fatty-acyl-phospholipid synthase [Serratia
           proteamaculans 568]
          Length = 383

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA-IDILDMEPILG- 111
           KL  I EK Q L+    ++D+G   G  +Q AA   G   +   + A    L  E   G 
Sbjct: 155 KLKMICEKLQ-LKPGMSLLDIGCGWGGLAQYAAENYGVTVHGVTISAEQQKLAQERCAGL 213

Query: 112 -VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            V+    D+ D          +    D ++S   +  +G +  D              A 
Sbjct: 214 EVEIVLQDYRD----------LNRQFDRIVSVGMFEHVGPKNYDTY---------FRVAA 254

Query: 171 EMLNIGGDFLVKT 183
             L   G FL+ T
Sbjct: 255 RNLKPDGLFLLHT 267


>gi|20092579|ref|NP_618654.1| arsenite S-adenosylmethyltransferase [Methanosarcina acetivorans
           C2A]
 gi|19917855|gb|AAM07134.1| ubiE/COQ5 methyltransferase [Methanosarcina acetivorans C2A]
          Length = 249

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 26/128 (20%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV--------AIDILDMEPILGVK 113
              L+    ++DLGS  G  S +AA+  GS      V         A D         V+
Sbjct: 68  FAELKPGDIVLDLGSGAGFDSFLAAQRVGSLGKVIGVDMTQEMVKKAQDNARKYGYSNVE 127

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           F + D                + D+++S+        +           E     A  +L
Sbjct: 128 FRQGDI-------EALPLDDRSVDVIISNCVINLAPDK-----------EKVFREAFRVL 169

Query: 174 NIGGDFLV 181
             GG   V
Sbjct: 170 KPGGRMYV 177


>gi|332298733|ref|YP_004440655.1| hypothetical protein Trebr_2109 [Treponema brennaborense DSM 12168]
 gi|332181836|gb|AEE17524.1| hypothetical protein Trebr_2109 [Treponema brennaborense DSM 12168]
          Length = 346

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 48  RARSAYKLLQ----INEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            +R+  KL +    +  +  +L     R  D G+ PG W+ V  ++  +     R     
Sbjct: 179 PSRAYLKLQEALTHVYSRFGVLPGEGSRCFDAGACPGGWTWVLRQLGCTVLAVDRAELAP 238

Query: 103 ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
            L  +P+  V F K D   L   E       G  D V SD
Sbjct: 239 KLMADPL--VTFQKHDAFTLPPQEI------GPFDWVCSD 270


>gi|308050526|ref|YP_003914092.1| RNA 2'-O-ribose methyltransferase [Ferrimonas balearica DSM 9799]
 gi|307632716|gb|ADN77018.1| putative RNA 2'-O-ribose methyltransferase [Ferrimonas balearica
           DSM 9799]
          Length = 352

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         ++   LQ   R VDLG+ PG W+    R          V 
Sbjct: 180 APSRSTLKLDEAIRYFLTEEQEAARLQPGMRAVDLGACPGGWTYQLVRR------GLFVQ 233

Query: 100 AIDILDM 106
           A+D   M
Sbjct: 234 AVDNGPM 240


>gi|18389423|dbj|BAB84188.1| TlyA homolog [Micrococcus luteus]
          Length = 230

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 32/145 (22%)

Query: 47  WRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-- 103
           + +R+A+KL+   E    +  + RR +D G+S G ++QV            RV A+D+  
Sbjct: 11  YVSRAAHKLVSALEAFPDVGVAGRRALDAGASTGGFTQVLLERGAE-----RVAAVDVGH 65

Query: 104 ----LDMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
                 +     V   +  +  DL + +     I G  DLV+SD++             +
Sbjct: 66  NQLAPPVRADPRVLVREGLNIRDLTAED-----IDGPVDLVVSDLS-----------FIS 109

Query: 159 MSLCEAATFFALEMLNIGGDFLVKT 183
           + L  A       +   G + L+  
Sbjct: 110 LRLVLAPL---ASVCRPGAELLLMV 131


>gi|224012321|ref|XP_002294813.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969252|gb|EED87593.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1529

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 34/145 (23%)

Query: 49  ARSAYKLLQINEKHQILQSNRR------------------------IVDLGSSPGSWSQV 84
            R+ YKL +  E++Q+L   +                          VD GSSPG W++ 
Sbjct: 253 CRAFYKLAEAFERYQLLFQGKNNNNWPFPSLKAGSKRRNDTTNPIIGVDCGSSPGGWTKF 312

Query: 85  AARITGSNANNTRVVAIDILDMEP----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL 140
               T  +     V +ID  DM      +  V   +      ++   + + +    +   
Sbjct: 313 LIDRTACDE----VYSIDPGDMSEAVLTLSNVHHLQM--TGEEAIPHLCKVLTQQRNDAR 366

Query: 141 SDMAYPTIGHRKIDHLRTMSLCEAA 165
             M    +    ++    M L   A
Sbjct: 367 IGMWVSDMCIHDVEKQVDMFLRAKA 391


>gi|242815587|ref|XP_002486598.1| methyltransferase SirN-like, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714937|gb|EED14360.1| methyltransferase SirN-like, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 305

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 18/116 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA----IDILDMEPILGVKFFKFDFLD 121
           Q   RI+D  ++ G W Q   +  G  A     +      D+    P  G++F K    +
Sbjct: 59  QPGLRILDSATADGIWLQDLRKEIGPAAEKQTFIGTDLVTDLFPNPPPEGIQFVKQSITE 118

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
               ++       +   VL                   +LCE A          GG
Sbjct: 119 PWPQDWKESFDLVHQRQVLG------FCGNFGLDQAVRNLCELA--------KPGG 160


>gi|118469022|ref|YP_888048.1| hemolysin A [Mycobacterium smegmatis str. MC2 155]
 gi|118170309|gb|ABK71205.1| hemolysin A [Mycobacterium smegmatis str. MC2 155]
          Length = 269

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           V  +    W +R A+KL+   +   +    RR +D G+S G +++V      +      V
Sbjct: 54  VIESDERTWVSRGAHKLIGALDAFGLSVEGRRCLDAGASTGGFTEVLLDRGAAEVVAADV 113

Query: 99  -VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
                   +     V   +      +  +   +AIGG   ++++D++
Sbjct: 114 GYGQLAWSLRSDPRVHVLE----RTNVRDLTPEAIGGPVQMIVADLS 156


>gi|296424464|ref|XP_002841768.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638016|emb|CAZ85959.1| unnamed protein product [Tuber melanosporum]
          Length = 320

 Score = 39.1 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 24/123 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           ++  RRI+DLG+  G W+  AA          RV+  D+  ++P      + F   D   
Sbjct: 80  IEDPRRILDLGTGTGIWAIDAADAYP----RARVIGTDLSPIQPSLVPPNLHFEVDDI-- 133

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            ++WEF            +                            AL  L  GG F +
Sbjct: 134 EETWEFADNTFS-----YIHIRQLTGFIKDWARLYAQ----------ALRCLKPGGYFEI 178

Query: 182 KTF 184
           + F
Sbjct: 179 QDF 181


>gi|115469194|ref|NP_001058196.1| Os06g0646000 [Oryza sativa Japonica Group]
 gi|51535533|dbj|BAD37452.1| methyltransferase-like [Oryza sativa Japonica Group]
 gi|51535631|dbj|BAD37605.1| methyltransferase-like [Oryza sativa Japonica Group]
 gi|113596236|dbj|BAF20110.1| Os06g0646000 [Oryza sativa Japonica Group]
 gi|215697029|dbj|BAG91023.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218198647|gb|EEC81074.1| hypothetical protein OsI_23892 [Oryza sativa Indica Group]
          Length = 345

 Score = 39.1 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 31/163 (19%)

Query: 44  LEGWR---ARSAYKLLQINEKHQILQ------SNRRIVDLGSSPGSWSQVAARITGSNAN 94
             GWR    RS +    ++E+ Q+ Q      +   ++D+    G ++    R    + +
Sbjct: 142 ERGWRQNFNRSGF--PGLDEEFQMAQDYFQSVAGGVLLDVSCGSGLFT----RKFAKSGS 195

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA--YPTIGHRK 152
            + V+A+D  +       +F + D             +  N  LV +D++          
Sbjct: 196 YSAVIALDFSENMLCQCYEFIQQDDT----------LVNTNLALVRADISRLPFASSSID 245

Query: 153 IDHLRTMSLCEAATFFAL----EMLNIGGDFLVKTFQGGTTND 191
             H      C  +   A+     +L  GG F+  TF     N+
Sbjct: 246 AIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNN 288


>gi|46127867|ref|XP_388487.1| hypothetical protein FG08311.1 [Gibberella zeae PH-1]
          Length = 323

 Score = 39.1 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 22/126 (17%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFD 118
            ++L+    ++DLG+  G W    A     N  NT+   +D+  ++P        FF  D
Sbjct: 67  DRVLEKGAEVLDLGTGIGRWCIDLAD----NYPNTQFHGMDLSPIQPDWVPENALFFVDD 122

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
                         G   +    D  +       I     +           + L  GG 
Sbjct: 123 I---------EHEAGWTYNADSFDYIHIRHTLHSIKDREQL------WDRIWKHLKPGGY 167

Query: 179 FLVKTF 184
             V+ F
Sbjct: 168 VEVQEF 173


>gi|308177782|ref|YP_003917188.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745245|emb|CBT76217.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 204

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           ++D G  PG W+Q  A              +D++       +++ + +F   +       
Sbjct: 50  VLDAGCGPGHWTQFIADAHR------CATGVDLVP----EFLEYARANFQKPEFLRADLA 99

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
            +  +            +    + H     L       A  +L  GG  L+  F G    
Sbjct: 100 HLPFDDQHFSG-----VLAWYSVIHAPPAELGPLLNELA-RVLKPGGTLLLGFFAGNQLE 153

Query: 191 DILCLL 196
                +
Sbjct: 154 AFAHQV 159


>gi|167629053|ref|YP_001679552.1| nol1/nop2/sun family putative RNA methylase [Heliobacterium
           modesticaldum Ice1]
 gi|167591793|gb|ABZ83541.1| nol1/nop2/sun family putative RNA methylase [Heliobacterium
           modesticaldum Ice1]
          Length = 503

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-----KFDFL 120
           Q   R++DL ++PG     A +I G  A    +VA +I         +       +   +
Sbjct: 102 QPGERVLDLCAAPGG---KATQIAGRLAGRGLLVANEIHPKRVKALSENLERWGARNILV 158

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKID-HLRTMSLCEAATFFA 169
             +S E +      + D ++ D               +     +   R  ++       A
Sbjct: 159 TQESPERLAGRFIADFDRIVVDAPCSGEGMFRKLPEAMDDWSEEKVFRCAAMQRELLPLA 218

Query: 170 LEMLNIGGDFL 180
             ML  GG  +
Sbjct: 219 ARMLRPGGVLV 229


>gi|158339356|ref|YP_001520533.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158309597|gb|ABW31214.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 241

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 26/131 (19%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILDMEP-------ILGVK 113
           H  L   +R++DL +  G  +  AA+  G   +   V +A D+++          +  V 
Sbjct: 4   HAFLSQGQRVLDLATGTGLVAIDAAQRVGRTGSVIGVDIATDMIECARQKAAALGLTNVD 63

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           F   D       E +    G    L  S          K            A      +L
Sbjct: 64  FLVAD------AEDLNFPAGSFDHLFCSSALIWMSDLPK------------ALRLWHRVL 105

Query: 174 NIGGDFLVKTF 184
             GG      F
Sbjct: 106 KPGGLLGFHAF 116


>gi|67541965|ref|XP_664750.1| hypothetical protein AN7146.2 [Aspergillus nidulans FGSC A4]
 gi|40742208|gb|EAA61398.1| hypothetical protein AN7146.2 [Aspergillus nidulans FGSC A4]
 gi|259483523|tpe|CBF78983.1| TPA: sterol 24-c-methyltransferase, putative (AFU_orthologue;
           AFUA_4G03630) [Aspergillus nidulans FGSC A4]
          Length = 377

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 23/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   +++D+G   G  ++   + T ++     V  ++  D +            +   +
Sbjct: 125 IKPGMKVLDVGCGVGGPAREIVKFTDAH-----VTGLNNNDYQ------------IQRAT 167

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA------LEMLNIGGD 178
               R+ +    + V  D           D +  +     A   A      + +L  GG 
Sbjct: 168 RYAEREGLSHKLNFVKGDFMQMQFPDNSFDAVYAIEATVHAPELAGVYKEIMRVLKPGGV 227

Query: 179 F 179
           F
Sbjct: 228 F 228


>gi|254784643|ref|YP_003072071.1| SAM-dependent methyltransferase, UbiE family [Teredinibacter
           turnerae T7901]
 gi|237685585|gb|ACR12849.1| SAM-dependent methyltransferase, UbiE family [Teredinibacter
           turnerae T7901]
          Length = 246

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 65  LQSNRRIVDLGSSPGS------WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           L+    ++DLG   G       +S     ++G  +    ++ IDI  ++ +      K D
Sbjct: 11  LKPGDCVLDLGCGEGRHTLGLYFSAPLGELSGQLS----LIGIDISAID-LATANKRKTD 65

Query: 119 FLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           F   +S     Q + G    L L D +   +   ++          A       +L  GG
Sbjct: 66  FPLPESQRAGIQFVRGDGLKLPLPDASVDHLICSEVLEHIPDY--HAMLREINRVLKPGG 123

Query: 178 DFLV 181
              V
Sbjct: 124 TLCV 127


>gi|83771812|dbj|BAE61942.1| unnamed protein product [Aspergillus oryzae]
          Length = 331

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 36/173 (20%)

Query: 52  AYKLLQINEKHQI--LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP- 108
            Y L+ ++ +  +  +++ +R++D+G+  G W    A        ++ V+  D+  ++P 
Sbjct: 109 VYSLI-LDGEIHLAPIKNPQRVLDIGTGTGIW----AVDFADQYQSSEVIGNDLSPIQPR 163

Query: 109 --ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
                 +F   DF    S+      I G                          LC+ A 
Sbjct: 164 WVPPNCQFEIDDFESEWSYAHPFDYIYGRELAGSIHDFPR--------------LCKQAF 209

Query: 167 FFALEMLNIGG-----DFLVKTFQGGTTNDILCLLKK-HFQKV--IHVKPVAS 211
                 L+ GG      F V  F    + +    +K+  F  V    VK  +S
Sbjct: 210 ----AHLHPGGFFEIQSFTVDIFSDDGSIEKAPYIKQVVFIDVVCKVVKAPSS 258


>gi|332978163|gb|EGK14897.1| NOL1/NOP2/sun family protein [Desmospora sp. 8437]
          Length = 459

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 66  QSNRRIVDLGSSPGS-WSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDL 122
           +   +I+DL ++PG   +Q+AA + G        ++ +     +E +          L  
Sbjct: 102 RPGEKILDLCAAPGGKTTQIAAHMKGKGILVANEISKERRKTLVENLERCGVPNALILGE 161

Query: 123 DSWEFIRQAIGGNPDLVLSDMAY--------PTIGHRKID--HLRTMSLCEAATFFALEM 172
           D      +  G    +++             P    R           L  +    A  M
Sbjct: 162 DPRHLSTRFTGWFDRVLIDAPCSGEGMFRKDPDTRERWSHRSTEAAAELQLSILEAAAPM 221

Query: 173 LNIGGDFL 180
           L  GG  +
Sbjct: 222 LRPGGRLV 229


>gi|114566742|ref|YP_753896.1| hypothetical protein Swol_1216 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337677|gb|ABI68525.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 286

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 48  RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           R R  +  L++     I++S+  ++D+GS PGS++   A          RVVA+D
Sbjct: 55  RTREVFSFLEL---FGIIKSDMTVLDIGSGPGSFAIPLAER------GARVVALD 100


>gi|149374750|ref|ZP_01892523.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter
           algicola DG893]
 gi|149360639|gb|EDM49090.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter
           algicola DG893]
          Length = 422

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
           + +KL  I  K   LQ   R+V++G+  G ++  AA+  G +   T + A  +      +
Sbjct: 180 AVHKLDTICRKLD-LQPGDRVVEIGTGWGGFAVHAAKHYGCHVTTTTISAEQLELAREKV 238

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
             +  +     L  ++  R   G    LV  +M           +   +S          
Sbjct: 239 REEHLEDRITLL--FDDYRDLEGQFDKLVSIEMIEAVGPQFLDSYFSQIS---------- 286

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           ++L   G  LV+            L    F
Sbjct: 287 QLLKPNGLALVQAINMPEQRYKRALKNVDF 316


>gi|325845413|ref|ZP_08168708.1| NOL1/NOP2/sun family protein [Turicibacter sp. HGF1]
 gi|325488563|gb|EGC90977.1| NOL1/NOP2/sun family protein [Turicibacter sp. HGF1]
          Length = 464

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNA---------NNTRVVAIDILDMEPILGVKFFK 116
           +   +++DL ++PG  S   A   G               ++++ +I  M    GVK   
Sbjct: 109 KPGEKVLDLCAAPGGKSTHVASQLGQKGLLVANEIYPQRAKILSQNIERM----GVKNA- 163

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS-------LCEA----A 165
              +  ++   + +      D ++ D      G  + D +           LC A     
Sbjct: 164 --IVLNETPARLAKHFPLYFDRIVVDAPCSGEGMFRKDVVAQEEWSLENVKLCAARQNEI 221

Query: 166 TFFALEMLNIGGDFL 180
              A +ML  GG  +
Sbjct: 222 LEEAAKMLKPGGRLV 236


>gi|325291371|ref|YP_004267552.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966772|gb|ADY57551.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 287

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL+++ EK         ++DLG+  G  +  AAR           ++ D L +     VK
Sbjct: 110 KLIELAEKRAGKDKEYSLLDLGTGSGVMAIAAARYIAGVKITAVDISEDALTVARQNAVK 169

Query: 114 ------FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC--EAA 165
                 F + D     + +     +   P + L +M        ++     ++LC  E  
Sbjct: 170 HGVEIDFRQGDLFTPVANQKFDWILTNPPYVSLPEME---DCSPEVLREPHLALCGGEDG 226

Query: 166 TFF-------ALEMLNIGGDFLVKTFQ 185
                     A + L+ GG  L +   
Sbjct: 227 LEIYRRLAAQAGDFLHPGGKLLAEIGS 253


>gi|83765243|dbj|BAE55386.1| unnamed protein product [Aspergillus oryzae]
          Length = 339

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 27/147 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARIT---------------GSNANNTRVVAIDILDMEP-- 108
           ++ + I+DLG+  G W+   A                   S   + +V+  D+  ++P  
Sbjct: 32  ENPQTILDLGTGTGIWAIDVAEYIFPFKKFPCKRIQLTLCSQFPSAKVIGNDLSPIQPSW 91

Query: 109 -ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS---DMAYPTIGHRKIDHLRTMSLCEA 164
               V+F   DF   D W   R          +S    + +  +  R         L + 
Sbjct: 92  VPPNVEFVVDDF--EDVWMHDRNYFDYVHARTISGFEHLDHNILITRVSCVQDWGRLMKQ 149

Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTND 191
           A       L   G F    F     +D
Sbjct: 150 AYD----HLKPSGYFECAEFVIDAFSD 172


>gi|83313194|ref|YP_423458.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1]
 gi|82948035|dbj|BAE52899.1| Predicted SAM-dependent methyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 306

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 17/100 (17%)

Query: 48  RARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
            +R+  KL +       +    +  VDLG+ PG W+ V A      +   RV+++D   +
Sbjct: 147 PSRAYLKLWEALTLAGEMPGPGQTCVDLGACPGGWTWVLA------STGARVISVDKAPL 200

Query: 107 EP----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142
            P    +  V+  +     ++  E       G  D + SD
Sbjct: 201 APNVAAMPNVEVRQGSAFGIEPSEI------GPVDWLCSD 234


>gi|116617804|ref|YP_818175.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096651|gb|ABJ61802.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 470

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 49/170 (28%), Gaps = 36/170 (21%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNA---------NNTRVVAIDILDMEPILGVKFFKF 117
              R++DL ++PG  S   A   G            N  ++++ +I  M         K 
Sbjct: 94  PGERVLDLAAAPGGKSTHLAAFMGQKGLLWSNEIFLNRAKILSENIERM-------GIKN 146

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH----------RKIDHLRTMSLCEAATF 167
             +   +   +   + G  D +L D   P  G                            
Sbjct: 147 AIVSSHTPAELSSKLPGFFDKILLD--APCSGEGMFRKDPGAIAYWHEHYPAENATRQRE 204

Query: 168 F---ALEMLNIGGDFL--VKTFQGGTTNDILCLLKK---HFQKVIHVKPV 209
               A++ML  GG  +    TF       I+  L      F  V   KP 
Sbjct: 205 ILTEAVKMLRPGGQIVYSTCTFAPEEDEQIINWLMAAYPEFSLVSIEKPD 254


>gi|66815485|ref|XP_641759.1| hypothetical protein DDB_G0279261 [Dictyostelium discoideum AX4]
 gi|60469792|gb|EAL67779.1| hypothetical protein DDB_G0279261 [Dictyostelium discoideum AX4]
          Length = 636

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 47  WRARSAYKLLQINEKHQ-------ILQSNRRIVDLGSSPGSWS 82
             +RS  KL ++ +K          ++ N  ++DLGSSPG W+
Sbjct: 465 LPSRSFLKLFELFQKFPPNLTPFPSMKPNETVIDLGSSPGGWT 507


>gi|149277880|ref|ZP_01884020.1| arsenite S-adenosylmethyltransferase [Pedobacter sp. BAL39]
 gi|149231568|gb|EDM36947.1| arsenite S-adenosylmethyltransferase [Pedobacter sp. BAL39]
          Length = 280

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 32/130 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PI 109
           +   ++    ++DLGS  G+ + VA           +V+ ID                  
Sbjct: 69  QFAGIKKGDVVIDLGSGAGNDAFVAR---AETGETGKVIGIDFTPAMIKKARINAEKLAF 125

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             ++F + D   +              D+++S+     + ++                  
Sbjct: 126 HNIEFRQGDIEHMPVTA-------NAADVIVSNCVLNLVPNKD-----------GVFKEI 167

Query: 170 LEMLNIGGDF 179
             +L  GG F
Sbjct: 168 FRVLKPGGHF 177


>gi|312065032|ref|XP_003135592.1| ubiquinone biosynthesis methyltransferase [Loa loa]
 gi|307769225|gb|EFO28459.1| ubiquinone biosynthesis methyltransferase [Loa loa]
          Length = 283

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 6/138 (4%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L +N  +VD+    G  +  A R   S      V   DI +    +G    +    D   
Sbjct: 85  LTANTSLVDVAGGTGDIAFRAVREIQSRKGTGSVTVCDINENMLRVGQ---QRAIDDPSV 141

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            +   + + G+ + +  D     I           S  +     A  +L  GG F    F
Sbjct: 142 LKARLKWVCGDAEALPFDENSFDIYTIAFGIRNCTS-IDKVLREAYRVLRPGGKFACLEF 200

Query: 185 QGGTTNDILCLLKKHFQK 202
                N +L      +  
Sbjct: 201 --SHINPLLKQFYDFYSF 216


>gi|157376451|ref|YP_001475051.1| putative RNA 2'-O-ribose methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|189040356|sp|A8FYK0|RLMM_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|157318825|gb|ABV37923.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 360

 Score = 39.1 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 40/168 (23%)

Query: 47  WRARSAYKLLQ-----INEKHQILQ--SNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +     I E+ + L+  S    VDLG+ PG W+ Q+  R     A +   
Sbjct: 183 APSRSTLKLDEAFIHFIPEEEKELRLSSGMNAVDLGACPGGWTYQLVRRGMFVAAIDNG- 241

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
            A+D   ME    VK ++ D    +        +       + DM        ++     
Sbjct: 242 -AMDEGLMETGQ-VKHYQADGFRFEPPRKNIYWL-------VCDMIEKPSRVAELIEAWA 292

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           +                 G F    F      ++   +K  +Q V  +
Sbjct: 293 I----------------NGWFKEAMF------NLKLPMKSRYQDVTTI 318


>gi|255072693|ref|XP_002500021.1| predicted protein [Micromonas sp. RCC299]
 gi|226515283|gb|ACO61279.1| predicted protein [Micromonas sp. RCC299]
          Length = 385

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 42  AQLEGWR---ARSAYKLLQINEKHQI-------LQSNRRIVDLGSSPGSWSQVAARITGS 91
           A   GWR   AR+ +     +E+ ++         + + +VD     G ++    R    
Sbjct: 157 AYERGWRDSFARAGF--PGPDEEFRLAQAKLLPFAAGKCVVDASCGSGLFT----RRFVK 210

Query: 92  NANNTRVVAIDILDMEPILGVKFFKF----DFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
           + +   VVA+D  D        F       D  +  +       +    D+    M   +
Sbjct: 211 SGDYGCVVALDFSDAMLRQARTFATEEGLVDGKNEATLTNQEDLLFVRADIARIPMTSDS 270

Query: 148 IGHRKIDHLRTMSL----CEAATFFALEMLNIGGDFLVKTF 184
           +G   +     +       EA       +L  GG F   TF
Sbjct: 271 VGG--VHAGAAIHCWPQPREAVAEIC-RVLEPGGSFCGTTF 308


>gi|92113604|ref|YP_573532.1| cyclopropane fatty acyl phospholipid synthase [Chromohalobacter
           salexigens DSM 3043]
 gi|91796694|gb|ABE58833.1| cyclopropane-fatty-acyl-phospholipid synthase [Chromohalobacter
           salexigens DSM 3043]
          Length = 387

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 24/134 (17%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----MEPI 109
           KL  I  K   L+   RI+D+G   GS+   AA   G       +           M+  
Sbjct: 157 KLDLICRKLD-LKPGMRILDIGCGWGSFMAYAAEHYGVECVGLTISREQADYGKSLMKKG 215

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
           L V+F   D+ ++D             D V+S   +  +G +                 A
Sbjct: 216 LPVEFRLQDYREID----------EQFDAVISIGMFEHVGRKNHREY---------MEVA 256

Query: 170 LEMLNIGGDFLVKT 183
              L  GG FL+ T
Sbjct: 257 HRCLKEGGLFLLHT 270


>gi|89093178|ref|ZP_01166128.1| hypothetical protein MED92_03837 [Oceanospirillum sp. MED92]
 gi|89082474|gb|EAR61696.1| hypothetical protein MED92_03837 [Oceanospirillum sp. MED92]
          Length = 355

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 21/109 (19%)

Query: 44  LEGWRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARI-------- 88
            +   +RS  KL +        +E    L      VDLG++PG W+    +         
Sbjct: 182 PKSAPSRSTLKLEEAWHWFIPKDEWDTRLAHGSTAVDLGAAPGGWTWQLVKRSMFVTAVD 241

Query: 89  TGSNANNTRVVAI------DILDMEPILGVKFFKFDFLDLDSWEFIRQA 131
            G    +            D     P   V     D +D         A
Sbjct: 242 NGPMNEDLMASGQVTHATEDAYRFVPDAPVNLMVCDVVDKPVKTANMAA 290


>gi|85711220|ref|ZP_01042280.1| Cyclopropane fatty acyl phospholipid synthase [Idiomarina baltica
           OS145]
 gi|85695133|gb|EAQ33071.1| Cyclopropane fatty acyl phospholipid synthase [Idiomarina baltica
           OS145]
          Length = 371

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV----VAIDILDMEPILGVKFFKFDFL 120
           L+   RI+D+G   GS+ Q AA   G       +    V +     + +  V+F   D+ 
Sbjct: 152 LKPGMRILDIGCGWGSFMQYAAENYGVECVGVTISKEQVRLGEERCKDLP-VEFRLQDYR 210

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           DLD           + D ++S   +  +G +  +              A   L   G FL
Sbjct: 211 DLD----------ESFDRIISLGMFEHVGQKNYEDY---------MDVARRCLKDDGLFL 251

Query: 181 VKT 183
           + T
Sbjct: 252 LHT 254


>gi|312880188|ref|ZP_07739988.1| hemolysin A [Aminomonas paucivorans DSM 12260]
 gi|310783479|gb|EFQ23877.1| hemolysin A [Aminomonas paucivorans DSM 12260]
          Length = 270

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 51/202 (25%)

Query: 7   SSSRRGLTQKVKNRSCQGS---SRDWLN--RHINDPYV--QRAQ-------------LEG 46
           S  RR L Q +  R    S   ++ W+   R   D +V  + A               E 
Sbjct: 2   SGRRRRLDQLLAERGLATSRTEAQRWIEEGRVRVDGFVIVKPASLVDPDQGIQVDTPKET 61

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI--- 103
           W +R A+KLL   E   +  +++  VD+G+S G ++QV  R         RV A+D+   
Sbjct: 62  WVSRGAHKLLGGLESFSLDPADKVCVDVGASTGGFTQVLLRRGAR-----RVYAVDVGYG 116

Query: 104 ---LDMEPILGVKFFKFDFLDLDSWEFIRQA-IGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
               ++     V        +  +  F+  A +G   DL + D +             ++
Sbjct: 117 QLAWELRNDPRVV-----VRERTNARFLEPATLGEPCDLAVCDAS-----------FISL 160

Query: 160 SLCEAATFFALEMLNIGGDFLV 181
            L        + +L   GD + 
Sbjct: 161 RLLLLPM---ISVLRPQGDLVA 179


>gi|299749667|ref|XP_001836258.2| hypothetical protein CC1G_06343 [Coprinopsis cinerea okayama7#130]
 gi|298408542|gb|EAU85630.2| hypothetical protein CC1G_06343 [Coprinopsis cinerea okayama7#130]
          Length = 473

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           H+  +    ++DLG   G W+  AA+   S+     ++  DI D++P
Sbjct: 60  HRFERPPEVVLDLGCGGGFWTLEAAKQWKSST----IIGFDITDVQP 102


>gi|167461482|ref|ZP_02326571.1| hypothetical protein Plarl_02798 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382143|ref|ZP_08056066.1| glucose-inhibited division protein B-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153862|gb|EFX46220.1| glucose-inhibited division protein B-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 279

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 30/158 (18%)

Query: 30  LNRHINDPYVQRAQLEGW-----RA---RSAYKLLQINEKHQI--LQSNRRIVDLGSSPG 79
              H  + Y       G+     R+   RS  K         I  L+    ++D G  PG
Sbjct: 10  QREHYREHYS-----PGYGTELIRSYQRRSVTK----EASFLISHLKPGMSLLDCGCGPG 60

Query: 80  SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLV 139
           + +   A +        +V  ID    +    +        D D    +R        L 
Sbjct: 61  TITAGLANLIAP----GQVTGIDKEAGQ----IDRAYAYARDQDVTN-VRFQEADIYQLP 111

Query: 140 LSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            +D ++  +    +       L   A   A  +L  GG
Sbjct: 112 FADESFDVVFMHALLQHLQNPL--KALKEANRVLKPGG 147


>gi|299144281|ref|ZP_07037361.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518766|gb|EFI42505.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 264

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 42/185 (22%)

Query: 47  WRARSAYK--------LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT--------- 89
           +RA S YK        +++   ++  +    + +D+G   G+ +   A+           
Sbjct: 69  YRAFS-YKGDRKMSKQIIEGIAEYVTIPDGGKGLDVGCGSGALTIACAKRNLNSKMVGLD 127

Query: 90  ---GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                  N +R +     + E I  V+F K D L LD                  D  + 
Sbjct: 128 RWGKEYKNYSRALCRKNAEAEGINNVEFVKGDALKLD----------------FPDETFD 171

Query: 147 TIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG----GTTNDILCLLKKH-FQ 201
            +    + H       +      L +L  GG F +         G  N  +  LK+  ++
Sbjct: 172 VVTSNYVYHNIKGYSHQELLKETLRVLKKGGTFAIHDIMSKMIYGDMNKFMEELKREGYE 231

Query: 202 KVIHV 206
           +V  +
Sbjct: 232 RVELI 236


>gi|296481451|gb|DAA23566.1| NOL1/NOP2/Sun domain family, member 6 [Bos taurus]
          Length = 408

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 28/140 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF 114
           Q   +I+DL ++PG  +   A +         V+A+D +  +            +  ++ 
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMHDQGE---VIALDKISKKVEKIKQNALLLGLNSIRA 289

Query: 115 FKFDFLDLDSWEFIRQAIGGNP-----------DLVLSDMA--YPTIGHRKIDHLRTMS- 160
           F FD       + ++   G  P           D   S M           +  + +   
Sbjct: 290 FCFDGTKALKLDMVKDTDGEPPFLPESFDRILLDAPCSGMGQRPNMACTWTLKEVMSYQP 349

Query: 161 LCEAATFFALEMLNIGGDFL 180
           L       A+E+L  GG  +
Sbjct: 350 LQRKLFTVAVELLKPGGMLV 369


>gi|263615267|gb|ACY70844.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 35/238 (14%)

Query: 6    GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQ--------LEGWR--------- 48
              S    L +K K +  Q      L+R   D Y +            EG +         
Sbjct: 2492 TGSQGETLGEKWKKKLNQ------LSRKEFDLYKKSGITEVDRTEAKEGLKRGETTHHAV 2545

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R + KL    E++ ++    R++DLG   G WS   A +                + EP
Sbjct: 2546 SRGSAKLQWFVERNMVIPEG-RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-EP 2603

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            +  +  + ++ + L S + +        D +L D+   +     ++  RT+         
Sbjct: 2604 VP-MSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIG-ESSPSPTVEESRTI----RVLKM 2657

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
                L     F +K       T  + L  L++ +  ++   P+ SR  + EM+ ++ G
Sbjct: 2658 VEPWLRSN-QFCIKVLNPYMPTVIEYLERLQRKYGGMLVRNPL-SRNSTHEMYWISNG 2713


>gi|15608440|ref|NP_215816.1| hypothetical protein Rv1300 [Mycobacterium tuberculosis H37Rv]
 gi|148661088|ref|YP_001282611.1| hypothetical protein MRA_1308 [Mycobacterium tuberculosis H37Ra]
 gi|167969627|ref|ZP_02551904.1| HemK [Mycobacterium tuberculosis H37Ra]
 gi|306775472|ref|ZP_07413809.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu001]
 gi|306971581|ref|ZP_07484242.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu010]
 gi|1322424|emb|CAA97733.1| PROBABLE HEMK PROTEIN HOMOLOG HEMK [Mycobacterium tuberculosis
           H37Rv]
 gi|148505240|gb|ABQ73049.1| HemK [Mycobacterium tuberculosis H37Ra]
 gi|308216020|gb|EFO75419.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu001]
 gi|308358949|gb|EFP47800.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu010]
          Length = 325

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 32/169 (18%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 134 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 193

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT---------------MSLCEAATF 167
                +   + G  DL++S+   P I    +                    M++  A   
Sbjct: 194 ----RLLPELDGQVDLMVSN--PPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVG 247

Query: 168 FALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
            A   L  GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 248 LAGRWLRPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 295


>gi|308380039|ref|ZP_07488465.2| hypothetical protein hemK [Mycobacterium tuberculosis SUMu011]
 gi|308399357|ref|ZP_07492977.2| hypothetical protein hemK [Mycobacterium tuberculosis SUMu012]
 gi|18275934|sp|Q10602|HEMK_MYCTU RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.MtuHHemKP
 gi|308362831|gb|EFP51682.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu011]
 gi|308366497|gb|EFP55348.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu012]
          Length = 304

 Score = 39.1 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 32/169 (18%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 113 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 172

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT---------------MSLCEAATF 167
                +   + G  DL++S+   P I    +                    M++  A   
Sbjct: 173 ----RLLPELDGQVDLMVSN--PPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVG 226

Query: 168 FALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
            A   L  GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 227 LAGRWLRPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 274


>gi|289753377|ref|ZP_06512755.1| hypothetical protein hemK [Mycobacterium tuberculosis EAS054]
 gi|289693964|gb|EFD61393.1| hypothetical protein hemK [Mycobacterium tuberculosis EAS054]
          Length = 310

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 134 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 193

Query: 123 DSWEFIRQAIGGNPDL--VLSDMA--YPTIGHRKIDHLR-----TMSLCEAATFFALEML 173
                +   +         + D A   P +      H        M++  A    A   L
Sbjct: 194 CLLPELDGQVDLMVSNPPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVGLAGRWL 253

Query: 174 NIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 254 RPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 295


>gi|215430187|ref|ZP_03428106.1| hypothetical protein MtubE_05798 [Mycobacterium tuberculosis
           EAS054]
          Length = 289

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 113 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 172

Query: 123 DSWEFIRQAIGGNPDL--VLSDMA--YPTIGHRKIDHLR-----TMSLCEAATFFALEML 173
                +   +         + D A   P +      H        M++  A    A   L
Sbjct: 173 CLLPELDGQVDLMVSNPPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVGLAGRWL 232

Query: 174 NIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 233 RPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 274


>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
 gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 20/130 (15%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL----------GVKFFK 116
           +   I+DL ++PG  +     +    A    V+A+DI D                    +
Sbjct: 246 NGENILDLCAAPGGKTTHILEL----APKAHVLAVDIDDARLKRVKENLQRLKQHATVIQ 301

Query: 117 FDFLDLD--SWEFIRQAIGGNPDLVLSDMAYPTIGHRKI----DHLRTMSLCEAATFFAL 170
            D    +  + + +   I  +     + +       + +    D      L         
Sbjct: 302 GDGTKPEEWAKDQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQAQILEAVW 361

Query: 171 EMLNIGGDFL 180
             L  GG  +
Sbjct: 362 SYLKPGGTLV 371


>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
           thermophilum H-6-12]
 gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
           thermophilum H-6-12]
          Length = 430

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 13/128 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   R++DL S+PG  S   A +  +      V              K      ++  + 
Sbjct: 242 EPGSRVIDLCSAPGLKSTHLAELMNNKGKIVSVDINKNRVKLVEENAKRLGISIIETLAE 301

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDH-------------LRTMSLCEAATFFALEM 172
           + +      N       +  P  G   I H              +   +       A ++
Sbjct: 302 DVLNLPDSLNGTFDRVLLDAPCSGLGVISHKPEIKWRLKREDIYKLSEMQIKMLERAGKL 361

Query: 173 LNIGGDFL 180
           L  GG  +
Sbjct: 362 LKKGGRMV 369


>gi|167522020|ref|XP_001745348.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776306|gb|EDQ89926.1| predicted protein [Monosiga brevicollis MX1]
          Length = 363

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 40/135 (29%), Gaps = 26/135 (19%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITG-------SNANNTRVVAIDILDMEPILGVK 113
           +H  +    RI+DLG   GS +   A           SN+   +    D    +    V 
Sbjct: 119 RHARITDGLRILDLGCGWGSLTLWLAEHYPKATIHSISNSRTQKQYIDDQCRAKGYKNVT 178

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            F  D  D ++         GN D V+S           I+    M   E         L
Sbjct: 179 VFTSDINDFEA--------EGNYDRVMS-----------IEMFEHMKNYEKLMNKITNWL 219

Query: 174 NIGGDFLVKTFQGGT 188
             GG   V  F    
Sbjct: 220 KPGGFLFVHIFTHRE 234


>gi|121637229|ref|YP_977452.1| putative hemk protein homolog hemK [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989704|ref|YP_002644391.1| putative HemK protein homolog [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|121492876|emb|CAL71347.1| Probable hemk protein homolog hemK [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772817|dbj|BAH25623.1| putative HemK protein homolog [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 325

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 134 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 193

Query: 123 DSWEFIRQAIGGNPDL--VLSDMA--YPTIGHRKIDHLR-----TMSLCEAATFFALEML 173
                +   +         + D A   P +      H        M++  A    A   L
Sbjct: 194 CLLPELDGQVDLMVSNPPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVGLAGRWL 253

Query: 174 NIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 254 RPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 295


>gi|15840750|ref|NP_335787.1| N-methylase PapM [Mycobacterium tuberculosis CDC1551]
 gi|13880942|gb|AAK45601.1| N-methylase PapM [Mycobacterium tuberculosis CDC1551]
 gi|323720257|gb|EGB29356.1| hypothetical protein TMMG_01996 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 304

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 113 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 172

Query: 123 DSWEFIRQAIGGNPDL--VLSDMA--YPTIGHRKIDHLR-----TMSLCEAATFFALEML 173
                +   +         + D A   P +      H        M++  A    A   L
Sbjct: 173 CLLPELDGQVDLMVSNPPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVGLAGRWL 232

Query: 174 NIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 233 RPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 274


>gi|31792493|ref|NP_854986.1| hypothetical protein Mb1332 [Mycobacterium bovis AF2122/97]
 gi|148822518|ref|YP_001287272.1| hypothetical protein TBFG_11327 [Mycobacterium tuberculosis F11]
 gi|215403142|ref|ZP_03415323.1| hypothetical protein Mtub0_05481 [Mycobacterium tuberculosis
           02_1987]
 gi|215410939|ref|ZP_03419747.1| hypothetical protein Mtub9_06320 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426622|ref|ZP_03424541.1| hypothetical protein MtubT9_09609 [Mycobacterium tuberculosis T92]
 gi|215445478|ref|ZP_03432230.1| hypothetical protein MtubT_05888 [Mycobacterium tuberculosis T85]
 gi|218753008|ref|ZP_03531804.1| hypothetical protein MtubG1_05990 [Mycobacterium tuberculosis GM
           1503]
 gi|253799654|ref|YP_003032655.1| hypothetical protein TBMG_02680 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231558|ref|ZP_04924885.1| hypothetical protein hemK [Mycobacterium tuberculosis C]
 gi|254364197|ref|ZP_04980243.1| hypothetical protein hemK [Mycobacterium tuberculosis str. Haarlem]
 gi|254550308|ref|ZP_05140755.1| hypothetical protein Mtube_07589 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260186239|ref|ZP_05763713.1| hypothetical protein MtubCP_09453 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200353|ref|ZP_05767844.1| hypothetical protein MtubT4_09543 [Mycobacterium tuberculosis T46]
 gi|260204558|ref|ZP_05772049.1| hypothetical protein MtubK8_09658 [Mycobacterium tuberculosis K85]
 gi|289442739|ref|ZP_06432483.1| hypothetical protein TBLG_03482 [Mycobacterium tuberculosis T46]
 gi|289446895|ref|ZP_06436639.1| hypothetical protein hemK [Mycobacterium tuberculosis CPHL_A]
 gi|289554910|ref|ZP_06444120.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 605]
 gi|289573963|ref|ZP_06454190.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745046|ref|ZP_06504424.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749854|ref|ZP_06509232.1| hypothetical protein hemK [Mycobacterium tuberculosis T92]
 gi|289757400|ref|ZP_06516778.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761455|ref|ZP_06520833.1| hypothetical protein hemK [Mycobacterium tuberculosis GM 1503]
 gi|294994857|ref|ZP_06800548.1| hypothetical protein Mtub2_10184 [Mycobacterium tuberculosis 210]
 gi|297633852|ref|ZP_06951632.1| hypothetical protein MtubK4_07004 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730839|ref|ZP_06959957.1| hypothetical protein MtubKR_07094 [Mycobacterium tuberculosis KZN
           R506]
 gi|298524804|ref|ZP_07012213.1| hypothetical protein hemK [Mycobacterium tuberculosis 94_M4241A]
 gi|306781617|ref|ZP_07419954.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu002]
 gi|306784024|ref|ZP_07422346.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu003]
 gi|306788387|ref|ZP_07426709.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu004]
 gi|306792714|ref|ZP_07431016.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu005]
 gi|306797120|ref|ZP_07435422.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu006]
 gi|306803000|ref|ZP_07439668.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu008]
 gi|306807190|ref|ZP_07443858.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu007]
 gi|306967389|ref|ZP_07480050.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu009]
 gi|313658171|ref|ZP_07815051.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Mycobacterium tuberculosis KZN V2475]
 gi|31618082|emb|CAD94193.1| PROBABLE HEMK PROTEIN HOMOLOG HEMK [Mycobacterium bovis AF2122/97]
 gi|124600617|gb|EAY59627.1| hypothetical protein hemK [Mycobacterium tuberculosis C]
 gi|134149711|gb|EBA41756.1| hypothetical protein hemK [Mycobacterium tuberculosis str. Haarlem]
 gi|148721045|gb|ABR05670.1| hypothetical protein hemK [Mycobacterium tuberculosis F11]
 gi|253321157|gb|ACT25760.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 1435]
 gi|289415658|gb|EFD12898.1| hypothetical protein TBLG_03482 [Mycobacterium tuberculosis T46]
 gi|289419853|gb|EFD17054.1| hypothetical protein hemK [Mycobacterium tuberculosis CPHL_A]
 gi|289439542|gb|EFD22035.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 605]
 gi|289538394|gb|EFD42972.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289685574|gb|EFD53062.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690441|gb|EFD57870.1| hypothetical protein hemK [Mycobacterium tuberculosis T92]
 gi|289708961|gb|EFD72977.1| hypothetical protein hemK [Mycobacterium tuberculosis GM 1503]
 gi|289712964|gb|EFD76976.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494598|gb|EFI29892.1| hypothetical protein hemK [Mycobacterium tuberculosis 94_M4241A]
 gi|308325579|gb|EFP14430.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu002]
 gi|308331257|gb|EFP20108.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu003]
 gi|308335073|gb|EFP23924.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu004]
 gi|308338881|gb|EFP27732.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu005]
 gi|308342495|gb|EFP31346.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu006]
 gi|308346429|gb|EFP35280.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu007]
 gi|308350300|gb|EFP39151.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu008]
 gi|308355001|gb|EFP43852.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu009]
 gi|326902922|gb|EGE49855.1| hypothetical protein hemK [Mycobacterium tuberculosis W-148]
 gi|328459400|gb|AEB04823.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 4207]
          Length = 325

 Score = 39.1 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFKFDFLDL 122
           IVD  +  G+ +   A+   +     R++ ID  D              V+  + D    
Sbjct: 134 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAAGTPVELVRADVTTP 193

Query: 123 DSWEFIRQAIGGNPDL--VLSDMA--YPTIGHRKIDHLR-----TMSLCEAATFFALEML 173
                +   +         + D A   P +      H        M++  A    A   L
Sbjct: 194 CLLPELDGQVDLMVSNPPYIPDAAVLEPEVAQHDPHHALFGGPDGMTVISAVVGLAGRWL 253

Query: 174 NIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAE 214
             GG F V+       +T D++   K  F  V   K +A R  
Sbjct: 254 RPGGLFAVEHDDTTSSSTVDLVSSTK-LFVDVQARKDLAGRPR 295


>gi|326902024|gb|AEA10290.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|325975283|gb|ADZ47896.1| nsP2 protein [Chikungunya virus]
          Length = 798

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
              +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 667 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 725

Query: 183 T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 726 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 769


>gi|299482775|gb|ADJ19189.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|299482772|gb|ADJ19187.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|298578084|gb|ADI88516.1| truncated nonstructural polyprotein [Chikungunya virus]
          Length = 1856

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124592|gb|ADG95955.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124589|gb|ADG95953.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124586|gb|ADG95951.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124565|gb|ADG95937.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124559|gb|ADG95933.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124556|gb|ADG95931.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124553|gb|ADG95929.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124550|gb|ADG95927.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124542|gb|ADG95922.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2440

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1203 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1261

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1262 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1305


>gi|296124539|gb|ADG95920.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124533|gb|ADG95916.1| nonstructural polyprotein [Chikungunya virus]
 gi|296124562|gb|ADG95935.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124527|gb|ADG95912.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124521|gb|ADG95908.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124508|gb|ADG95900.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124505|gb|ADG95898.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124502|gb|ADG95896.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124478|gb|ADG95880.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|288572720|gb|ACS29378.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572723|gb|ACS29379.2| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|288572699|gb|ACS29300.2| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|288572693|gb|ACS29298.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572696|gb|ACS29299.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572702|gb|ACS29301.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572705|gb|ACS29311.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572708|gb|ACS29313.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572711|gb|ACS29331.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572714|gb|ACS29352.2| nonstructural polyprotein [Chikungunya virus]
 gi|288572717|gb|ACS29370.2| nonstructural polyprotein [Chikungunya virus]
 gi|299482778|gb|ADJ19191.1| nonstructural polyprotein [Chikungunya virus]
 gi|300509537|gb|ADK24721.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|288572690|gb|ACS29296.2| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|288572687|gb|ACS29295.2| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|280983633|gb|ACZ98840.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|280983630|gb|ACZ98838.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|280983627|gb|ACZ98836.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|280983624|gb|ACZ98834.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|270311618|gb|ACZ72970.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073978|gb|ACT35082.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073975|gb|ACT35078.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073969|gb|ACT35060.1| nonstructural polyprotein [Chikungunya virus]
 gi|288572727|gb|ADC53744.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073960|gb|ACY09944.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073957|gb|ACY09942.1| nonstructural polyprotein [Chikungunya virus]
 gi|288572730|gb|ADC53745.1| nonstructural polyprotein [Chikungunya virus]
 gi|288572733|gb|ADC53746.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073954|gb|ACT35035.1| nonstructural polyprotein [Chikungunya virus]
 gi|288572684|gb|ACS29294.2| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073951|gb|ACT35032.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073948|gb|ACT35031.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|221229074|gb|ACM09920.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|221229071|gb|ACM09918.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|221229068|gb|ACM09916.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|221229065|gb|ACM09914.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|221229053|gb|ACM09906.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262410956|gb|ACY66846.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262410953|gb|ACY66844.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262410947|gb|ACY66840.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262093243|gb|ACY25947.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262093240|gb|ACY25945.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMPGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262093237|gb|ACY25943.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262093234|gb|ACY25941.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262093231|gb|ACY25939.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262093228|gb|ACY25937.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|259014736|gb|ACV88658.1| truncated non-structural polyprotein [Chikungunya virus]
          Length = 1856

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|169798711|gb|ACA81772.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|256403025|dbj|BAH97930.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|189418708|gb|ACD93609.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|189418705|gb|ACD93607.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2461

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|160426350|gb|ABX40005.1| nonstructural polyprotein [Cloning vector pCHIKV-LR ic]
 gi|160426355|gb|ABX40009.1| nonstructural polyprotein [Cloning vector pCHIK-LR 5`GFP]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|160415255|gb|ABX38964.1| nonstructural polyprotein short variant [Chikungunya virus]
          Length = 1856

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|160415254|gb|ABX38963.1| nonstructural polyprotein long variant [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|124295598|gb|ABN04201.1| nonstructural polyprotein [Chikungunya virus]
 gi|296124490|gb|ADG95888.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|124295595|gb|ABN04199.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|124295589|gb|ABN04195.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|124295577|gb|ABN04187.1| nonstructural polyprotein [Chikungunya virus]
 gi|124295580|gb|ABN04189.1| nonstructural polyprotein [Chikungunya virus]
 gi|124295583|gb|ABN04191.1| nonstructural polyprotein [Chikungunya virus]
 gi|221229059|gb|ACM09910.1| nonstructural polyprotein [Chikungunya virus]
 gi|221229062|gb|ACM09912.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|124295592|gb|ABN04197.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|145683744|gb|ABP88821.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|133779731|gb|ABO38820.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|133779734|gb|ABO38822.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|126361459|gb|ABO10016.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|116295204|gb|ABJ98543.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|116047550|gb|ABD95937.2| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|106880544|emb|CAJ90486.1| non-structural polyprotein [Chikungunya virus]
          Length = 2473

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|106880545|emb|CAJ90487.1| non-structural polyprotein [Chikungunya virus]
          Length = 1855

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|106880537|emb|CAJ90472.1| non-structural polyprotein [Chikungunya virus]
          Length = 1856

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|106880536|emb|CAJ90471.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|106880552|emb|CAJ90480.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|100801738|emb|CAJ90469.1| non-structural polyprotein [Chikungunya virus]
 gi|106880541|emb|CAJ90475.1| non-structural polyprotein [Chikungunya virus]
 gi|106880549|emb|CAJ90478.1| non-structural polyprotein [Chikungunya virus]
          Length = 1856

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|100801737|emb|CAJ90468.1| non-structural polyprotein [Chikungunya virus]
 gi|106880540|emb|CAJ90474.1| non-structural polyprotein [Chikungunya virus]
 gi|106880548|emb|CAJ90477.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|22789217|ref|NP_690588.1| nonstructural polyprotein [Chikungunya virus]
 gi|81951234|sp|Q8JUX6|POLN_CHIKS RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|22726266|gb|AAN05101.1|AF369024_1 nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|194736219|ref|YP_002117416.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197300612|ref|ZP_03166137.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194711721|gb|ACF90942.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197291721|gb|EDY31071.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 541

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 26/128 (20%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARI----TGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           ++L +  RI+DLG  PG ++++ A      TG + +   +           L + + + D
Sbjct: 61  RLLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQAANLNIDYIQQD 120

Query: 119 FLD---LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                  + ++FI    G       +D                            + L  
Sbjct: 121 IRTYHPTEPFDFIMMTFGELNVFSAADAQSLISH-------------------CAQWLKP 161

Query: 176 GGDFLVKT 183
           GG  LV+ 
Sbjct: 162 GGKLLVEV 169


>gi|166295190|ref|NP_081369.2| probable methyltransferase C20orf7 homolog, mitochondrial precursor
           [Mus musculus]
 gi|160016838|sp|A2APY7|CT007_MOUSE RecName: Full=Probable methyltransferase C20orf7 homolog,
           mitochondrial; Flags: Precursor
 gi|122890040|emb|CAM14882.1| novel protein (231003L22Rik) [Mus musculus]
          Length = 343

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 26/196 (13%)

Query: 2   VKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEK 61
           V P GS+S R L   + +R  +   ++W  R  +       + E   +R A      +  
Sbjct: 33  VPPSGSTSPRALN--IFDRELKRKQKNWAARQPDPMKFDYLKEE-VGSRIA------DRV 83

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
           + I +     +D+G   G  +Q   +         ++   DI +      ++       D
Sbjct: 84  YDIARDFPLALDIGCGRGYIAQHLDK-----ETVGKIFQTDIAEHALKNSLE------TD 132

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           + +   +             D+   ++    ++          A      +L   G F+ 
Sbjct: 133 IPTVNILADEEFLPFQENTFDLVVSSLSLHWVND------LPRALEQIHYVLKPDGVFVG 186

Query: 182 KTFQGGTTNDILCLLK 197
             F G T  ++ C L+
Sbjct: 187 AMFGGDTLYELRCSLQ 202


>gi|115387689|ref|XP_001211350.1| sterol 24-C-methyltransferase [Aspergillus terreus NIH2624]
 gi|114195434|gb|EAU37134.1| sterol 24-C-methyltransferase [Aspergillus terreus NIH2624]
          Length = 377

 Score = 39.1 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 23/133 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   +++D+G   G  ++   + T +N     VV ++  D +            ++  +
Sbjct: 125 IKPGMKVLDVGCGVGGPAREIVKFTDAN-----VVGLNNNDYQ------------IERAT 167

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               R+ +      V  D           D +  +     A            +L  GG 
Sbjct: 168 RYAEREGLSDKLSFVKGDFMQMRFPDNSFDAVYAIEATVHAPELEGVYKEIFRVLKPGGV 227

Query: 179 FLVKTFQGGTTND 191
           F V  +      D
Sbjct: 228 FGVYEWLMTDEYD 240


>gi|311278245|ref|YP_003940476.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Enterobacter cloacae
           SCF1]
 gi|308747440|gb|ADO47192.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Enterobacter cloacae
           SCF1]
          Length = 366

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 33  HINDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSW 81
           H N P+     +        +RS  KL +        +E  + L +    VDLG+ PG W
Sbjct: 166 HNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGW 225

Query: 82  SQVAARIT 89
           +    +  
Sbjct: 226 TYQLVKRN 233


>gi|283786509|ref|YP_003366374.1| RNA 2'-O-ribose methyltransferase [Citrobacter rodentium ICC168]
 gi|282949963|emb|CBG89591.1| putative RNA 2'-O-ribose methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 366

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 19/84 (22%)

Query: 35  NDPYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS- 82
           N PY     +        +RS  KL +        +E  + L +    VDLG+ PG W+ 
Sbjct: 168 NSPYYMGIPRLKFPADAPSRSTLKLEEALHVFIPQDEWDERLANGMYAVDLGACPGGWTY 227

Query: 83  QVAARITGSNANNTRVVAIDILDM 106
           Q+  R          V ++D   M
Sbjct: 228 QLVKRNMW-------VYSVDNGPM 244


>gi|226942756|ref|YP_002797829.1| biotin synthesis protein BioC [Azotobacter vinelandii DJ]
 gi|226717683|gb|ACO76854.1| biotin synthesis protein BioC [Azotobacter vinelandii DJ]
          Length = 267

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 22/145 (15%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG--VKFFKFDFLDLDS 124
             +R VDLGS  G +SQ  A    +       +A  +L      G    F   D      
Sbjct: 49  RAQRWVDLGSGTGHFSQALAERFPAGQGMALDLAEGMLRHARPRGGAAHFVCGD------ 102

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
                   G + DL+ S +A    G              A    A  +L  GG F   + 
Sbjct: 103 -AECLPLAGASQDLLFSSLALQWCGDFA-----------AVLGEAHRVLRPGGVFAFSSL 150

Query: 185 QGGTTNDILCLLKKH--FQKVIHVK 207
             GT  ++    +    F  V   +
Sbjct: 151 CVGTLQELHDSWQAVDGFVHVNRFR 175


>gi|219113221|ref|XP_002186194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583044|gb|ACI65664.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 392

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 19/127 (14%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG----VKFFKFDFLDLDSW 125
           +++D+G   G  S+  A+  GS+A+   V  I +   +   G    V+    D       
Sbjct: 169 KVLDVGCGFGGTSRYLAKKLGSDAH---VTGITLSPKQVQRGTELAVEQGVADNTRFTVM 225

Query: 126 EFI-RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           + +       + D+V +  +   +  +K      M            +L  GG F++  +
Sbjct: 226 DALQMDFPDNSFDIVWACESGEHMPDKKAYISEMM-----------RVLKPGGTFVMACW 274

Query: 185 QGGTTND 191
                ++
Sbjct: 275 SQRDDSE 281


>gi|317149819|ref|XP_001823075.2| UMTA methyltransferase family protein [Aspergillus oryzae RIB40]
          Length = 230

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 33/158 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           +++ +R++D+G+  G W    A        ++ V+  D+  ++P       +F   DF  
Sbjct: 22  IKNPQRVLDIGTGTGIW----AVDFADQYQSSEVIGNDLSPIQPRWVPPNCQFEIDDFES 77

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG---- 177
             S+      I G                          LC+ A       L+ GG    
Sbjct: 78  EWSYAHPFDYIYGRELAGSIHDFPR--------------LCKQAF----AHLHPGGFFEI 119

Query: 178 -DFLVKTFQGGTTNDILCLLKK-HFQKV--IHVKPVAS 211
             F V  F    + +    +K+  F  V    VK  +S
Sbjct: 120 QSFTVDIFSDDGSIEKAPYIKQVVFIDVVCKVVKAPSS 157


>gi|229110679|ref|ZP_04240243.1| hypothetical protein bcere0018_29290 [Bacillus cereus Rock1-15]
 gi|228672747|gb|EEL28027.1| hypothetical protein bcere0018_29290 [Bacillus cereus Rock1-15]
          Length = 415

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    + + +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKNEVKHLIRSWKEEHVPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEATVSPYKP 291


>gi|256377301|ref|YP_003100961.1| methyltransferase type 11 [Actinosynnema mirum DSM 43827]
 gi|255921604|gb|ACU37115.1| Methyltransferase type 11 [Actinosynnema mirum DSM 43827]
          Length = 210

 Score = 38.7 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 18/126 (14%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
           +L    R+ DLG  PG  +     +  S         +D+                +  +
Sbjct: 43  LLGPGARVADLGCGPGHLTAHLRALGLS------AFGVDLSP----------TMITIARE 86

Query: 124 SWEFIRQAIGGNPDLVLSDMA-YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           +   +  A G    L L D +    +    + H     L      F   +L  GG  ++ 
Sbjct: 87  ANPDLEFAEGSMAQLDLPDDSLAGILAFYSVIHTPPAELPPVLAEFH-RVLEPGGHLMLG 145

Query: 183 TFQGGT 188
            F G  
Sbjct: 146 FFAGDD 151


>gi|294813601|ref|ZP_06772244.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326441993|ref|ZP_08216727.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326200|gb|EFG07843.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 326

 Score = 38.7 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 29/126 (23%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
                R++DL   PG +    AR         RV  +D+                  L+ 
Sbjct: 118 FPRGSRVLDLCCGPGLFLVPLARRGH------RVTGVDLSPAM--------------LER 157

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRK---IDHLRTMSL------CEAATFFALEMLNI 175
                +  G   +L+ +DM   T        ++   +                A   L  
Sbjct: 158 ARAACERAGAEVELIRADMLDYTAPGAYDVILNVFTSFGYFADPADNLRVLRNARRSLAP 217

Query: 176 GGDFLV 181
           GG  LV
Sbjct: 218 GGTLLV 223


>gi|323489251|ref|ZP_08094483.1| Alcohol dehydrogenase GroES domain protein [Planococcus donghaensis
           MPA1U2]
 gi|323397138|gb|EGA89952.1| Alcohol dehydrogenase GroES domain protein [Planococcus donghaensis
           MPA1U2]
          Length = 379

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 18/157 (11%)

Query: 61  KHQILQSNRRIVDLGSSPGS-------WSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           +H  ++    +V LG  P         W Q A+R+   +    R+       +  +  V 
Sbjct: 173 EHAGVKKGDTVVVLGCGPIGLMAQKFAWMQGASRVIAVDEIPYRMELAK--KINNVEIVD 230

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL---CEAATFFAL 170
           F + D    ++   I +   G   +V+  +             + + L     +A   A 
Sbjct: 231 FSQHD----NTGALIHEITQGGARIVIDCVGMDGKKSPAEAVQQKLMLQGGTLSAIDIAK 286

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
             ++  G   +    G T N     L   F++ + +K
Sbjct: 287 GAVSKFGTIQLTGVYGLTYNQF--PLGNMFERNVTLK 321


>gi|302908863|ref|XP_003049946.1| hypothetical protein NECHADRAFT_63362 [Nectria haematococca mpVI
           77-13-4]
 gi|256730883|gb|EEU44233.1| hypothetical protein NECHADRAFT_63362 [Nectria haematococca mpVI
           77-13-4]
          Length = 341

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 19/129 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDMEPIL---GVKFFKFDFL 120
           L+   RI+DLG   GS +   A ++  S              ++ +    G+   +    
Sbjct: 114 LKDGMRILDLGCGWGSGAIYFAEKLPNSQITAFSNSRTQKEYIDSVAKEKGITNLQVITG 173

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           D+  +EF  ++      + L             +H++   L  A    A   L   G   
Sbjct: 174 DVVDYEFEPESFDRVVSIEL------------FEHMKNYELLLAKVSRA---LKPRGKLF 218

Query: 181 VKTFQGGTT 189
           V  F   T 
Sbjct: 219 VHIFAHKTD 227


>gi|254777574|ref|ZP_05219090.1| methyltransferase type 11 [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 248

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 25/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +      +D+GS PG+ +   AR  G +                         D  +   
Sbjct: 89  IPRGGVALDVGSGPGNVTASLARAAGPDGLA-------------------LGIDISEPML 129

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT---MSLC---EAATFFALEMLNIGGD 178
              +R   G     + +D     +    +D   +   + L    +AA      +L  GG 
Sbjct: 130 ARAVRNEAGPQVGFIKADAQRLPLRDNTVDAAVSTAVLQLVPKPQAALVEIARVLRPGGR 189

Query: 179 FLVKT 183
             V  
Sbjct: 190 LAVMV 194


>gi|156751973|gb|ABU93704.1| non-structural polyprotein [Chikungunya virus Wuerzburg 1]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLXLGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|118462307|ref|YP_884344.1| methyltransferase type 11 [Mycobacterium avium 104]
 gi|118163594|gb|ABK64491.1| methyltransferase type 11 [Mycobacterium avium 104]
          Length = 248

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 25/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +      +D+GS PG+ +   AR  G +                         D  +   
Sbjct: 89  IPRGGVALDVGSGPGNVTASLARAAGPDGLA-------------------LGIDISEPML 129

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT---MSLC---EAATFFALEMLNIGGD 178
              +R   G     + +D     +    +D   +   + L    +AA      +L  GG 
Sbjct: 130 ARAVRNEAGPQVGFIKADAQRLPLRDNTVDAAVSTAVLQLVPNPQAALVEIARVLRPGGR 189

Query: 179 FLVKT 183
             V  
Sbjct: 190 LAVMV 194


>gi|222869996|gb|EEF07127.1| predicted protein [Populus trichocarpa]
          Length = 330

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVK----TFQGGTTNDILCLLKKHFQKVIHV 206
           D   +    + A      +L  GG  ++      F G     ++  L++ F  V   
Sbjct: 194 DTPASALYSDQALARMKRVLAPGGALVLHLGSPVFHGEQVARLVASLRERFAIVRCY 250


>gi|160896193|ref|YP_001561775.1| spermidine synthase [Delftia acidovorans SPH-1]
 gi|160361777|gb|ABX33390.1| S-adenosylmethionine decarboxylase proenzyme [Delftia acidovorans
           SPH-1]
          Length = 431

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 154 DHLRTMSLCEAATFFALEMLNIGGDFLVK----TFQGGTTNDILCLLKKHFQKVIHV 206
           D   +    + A      +L  GG  ++      F G     ++  L++ F  V   
Sbjct: 295 DTPASALYSDQALARMKRVLAPGGALVLHLGSPVFHGEQVARLVASLRERFAIVRCY 351


>gi|87306670|ref|ZP_01088817.1| hypothetical protein DSM3645_10062 [Blastopirellula marina DSM
           3645]
 gi|87290849|gb|EAQ82736.1| hypothetical protein DSM3645_10062 [Blastopirellula marina DSM
           3645]
          Length = 249

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 32/137 (23%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-M----------EPILGVK 113
           L+      D+G   G ++   A + G+     RV+A+DI   M            I  V 
Sbjct: 68  LKPGMIACDMGCGNGFYTLKMAEVVGAEG---RVLAVDIQPEMLRLLQARAEEAEIKNVD 124

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
               D  D        +   G  DL+L         + +  H   M           E L
Sbjct: 125 RILGDVHDP-------KLPAGQVDLILC-----IDVYHEFSHPVQM------LAAMRESL 166

Query: 174 NIGGDFLVKTFQGGTTN 190
              G  ++  F+    N
Sbjct: 167 KPTGRLVLVEFRAEDEN 183


>gi|67523255|ref|XP_659688.1| hypothetical protein AN2084.2 [Aspergillus nidulans FGSC A4]
 gi|40745760|gb|EAA64916.1| hypothetical protein AN2084.2 [Aspergillus nidulans FGSC A4]
          Length = 1080

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 23/120 (19%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           R IVD+G+  G W    A+I      N ++   D+   +P      V F   DF + + W
Sbjct: 85  RTIVDIGTGSGIWPIELAQIFP----NAQITGTDLSPCQPTEVPENVHFIVDDFTEDE-W 139

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
            + R ++       LS          +                    L  GG   +  F 
Sbjct: 140 LWDRNSLDYIHAGHLSGALPSYKDLIRK---------------MYSHLRPGGWAEIHEFD 184


>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
 gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
          Length = 460

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 55  LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID----- 102
           L+ I ++  +L       +   R++D  ++PG  S     +     +   ++A D     
Sbjct: 243 LISIQDESSMLVAEAIQPEPGMRVLDCCAAPGGKSAHMGELMKDEGS---IIANDIHTHK 299

Query: 103 ---ILDMEPILG---VKFFKFDFLDL----DSWEFIRQAIGGNPD-LVLSDMAYPTI-GH 150
              I D    LG   +     D LDL    +   F R  +      L +         G 
Sbjct: 300 GKLISDQASRLGLDSIMTVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGK 359

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
            + D     +L          +L  GG  +
Sbjct: 360 SEEDIAEIAALQLRLLESVSSLLRPGGILV 389


>gi|254391740|ref|ZP_05006936.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|197705423|gb|EDY51235.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
          Length = 238

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 29/126 (23%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
                R++DL   PG +    AR         RV  +D+                  L+ 
Sbjct: 30  FPRGSRVLDLCCGPGLFLVPLARRGH------RVTGVDLSPAM--------------LER 69

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRK---IDHLRTMSL------CEAATFFALEMLNI 175
                +  G   +L+ +DM   T        ++   +                A   L  
Sbjct: 70  ARAACERAGAEVELIRADMLDYTAPGAYDVILNVFTSFGYFADPADNLRVLRNARRSLAP 129

Query: 176 GGDFLV 181
           GG  LV
Sbjct: 130 GGTLLV 135


>gi|152986204|ref|YP_001349121.1| putative RNA 2'-O-ribose methyltransferase [Pseudomonas aeruginosa
           PA7]
 gi|166199443|sp|A6V7T6|RLMM_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|150961362|gb|ABR83387.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 352

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +         E  + L  +   VDLG++PG W+              RV 
Sbjct: 180 APSRSTLKLEEAWHQFIPRQEWDKRLAPDMLAVDLGAAPGGWTWQLVNR------EMRVT 233

Query: 100 AIDILDM 106
           A+D   M
Sbjct: 234 AVDNGPM 240


>gi|45272584|gb|AAS57723.1| phosphoethanolamine N-methyltransferase [Oryza sativa]
          Length = 499

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 36/187 (19%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-----ILQS--NR 69
           V+ R  Q S   +   H  D  V+        +R+A     ++++ +     +L     +
Sbjct: 15  VEERKAQKS---YWEEHSKDLTVE---AMMLDSRAA----DLDKEERPEILSLLPPYEGK 64

Query: 70  RIVDLGSSPGSWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            +++LG+  G ++    +  G   +      V+  +           F   D        
Sbjct: 65  SVLELGAGIGRFTGELVKTAGHVLAMDFIESVIKKNESINGHHKNASFMCADVT------ 118

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTF 184
                    PDL++ D +   I    +    +    E      +  L +GG   F    F
Sbjct: 119 --------CPDLMIEDNSIDLIFSNWLLMYLSDEEVEKLVKRMVRWLKVGGYIFFRESCF 170

Query: 185 QGGTTND 191
                + 
Sbjct: 171 HQSGDSK 177


>gi|317493201|ref|ZP_07951624.1| hypothetical protein HMPREF0864_02388 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918861|gb|EFV40197.1| hypothetical protein HMPREF0864_02388 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 381

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 15/70 (21%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L    + VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEALHVFIPHDEWDERLAGGMKAVDLGACPGGWTYQLVKRSMW-------V 236

Query: 99  VAIDILDMEP 108
            ++D   M P
Sbjct: 237 HSVDNGPMAP 246


>gi|255513559|gb|EET89825.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 398

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 13/62 (20%)

Query: 50  RSAYKLLQINEKHQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           R+++K   I E     +      +  +D+G++PG WS   A      + + +V+AID   
Sbjct: 182 RASFK---IAEAFNYFKVNPSKIKVAIDIGAAPGGWSYYLA------SKDIKVIAIDNAL 232

Query: 106 ME 107
           M+
Sbjct: 233 MD 234


>gi|171779487|ref|ZP_02920451.1| hypothetical protein STRINF_01332 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282104|gb|EDT47535.1| hypothetical protein STRINF_01332 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 197

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
            +  + ++DLG   G      A++ G       +    I   +        + D    D 
Sbjct: 55  FEKGKILLDLGCGYGPLGISLAKVQGVKPTMVDINNRAIDLAKQNAQKNGVEADIFQSDI 114

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF--LVK 182
           +E +     G  D ++S+   P    +++ H             ++  L +GG+   +++
Sbjct: 115 YEKVN----GTFDYIISN--PPIRAGKQVVHTIISE--------SINYLKVGGNLTIVIQ 160

Query: 183 TFQGGTTNDILCLLKKHFQKVIHVK 207
             QG  +      +++ F  V  +K
Sbjct: 161 KKQGAPSAK--AKMEEVFGNVEILK 183


>gi|225352189|ref|ZP_03743212.1| hypothetical protein BIFPSEUDO_03805 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157436|gb|EEG70775.1| hypothetical protein BIFPSEUDO_03805 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 253

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 45  EGWRARSAYKLLQINEKH---QILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           +G+ +R AYKL+   E+     +  +   R +D+G+S G +  V  R      +  +V+A
Sbjct: 63  DGYVSRGAYKLVGAFERFADVGLRSAQGLRCLDIGASTGGFCDVLLR-----NDAAQVIA 117

Query: 101 ID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY-------PTIGHR 151
           +D     ++P +       +   ++  +   + +   P++++SD+++       P I   
Sbjct: 118 LDVGHGQLDPKIAHDDRIIEMSGVNIRDVYAEDLPYRPEMIVSDVSFISLTYVIPVIARI 177

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGG 177
                + + L +         L   G
Sbjct: 178 AAPQAQIVLLVKPQFEVGKGNLGKNG 203


>gi|154488635|ref|ZP_02029484.1| hypothetical protein BIFADO_01942 [Bifidobacterium adolescentis
           L2-32]
 gi|154082772|gb|EDN81817.1| hypothetical protein BIFADO_01942 [Bifidobacterium adolescentis
           L2-32]
          Length = 238

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 45  EGWRARSAYKLLQINEKH---QILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           +G+ +R AYKL+   E+     +  +   R +D+G+S G +  V  R      +  +V+A
Sbjct: 48  DGYVSRGAYKLVGAFERFADVGLRSAQGLRCLDIGASTGGFCDVLLR-----NDAAQVIA 102

Query: 101 ID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY-------PTIGHR 151
           +D     ++P +       +   ++  +   + +   P++++SD+++       P I   
Sbjct: 103 LDVGHGQLDPKIAHDDRIIEMSGVNIRDVYAEDLPYRPEMIVSDVSFISLTYVIPVIARI 162

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGG 177
                + + L +         L   G
Sbjct: 163 AAPQAQIVLLVKPQFEVGKGNLGKNG 188


>gi|114777268|ref|ZP_01452279.1| nitroreductase family protein, putative [Mariprofundus ferrooxydans
           PV-1]
 gi|114552413|gb|EAU54896.1| nitroreductase family protein, putative [Mariprofundus ferrooxydans
           PV-1]
          Length = 402

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L      +DLG  PG+ +   A+  G +   + V    I   E +   +  + DF     
Sbjct: 234 LGDGATALDLGCGPGTQAVALAK-CGLSVTASDVSWTAIASAERLAAAEHVRVDF---HV 289

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            + +   + G  DL++    +              +L         + L  G   L+K F
Sbjct: 290 DDVLHSKLTGQFDLIIDRGVFHCFADADDQQTYVSTL--------HQRLKPGATLLLKCF 341

Query: 185 QGGTTND 191
               T++
Sbjct: 342 HKQETSE 348


>gi|124481948|gb|ABN11825.1| polyprotein [St. Louis encephalitis virus]
 gi|124481958|gb|ABN11830.1| polyprotein [St. Louis encephalitis virus]
          Length = 3412

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +      + D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAESADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKT---FQGGTTNDILCLLKKHFQK 202
                 +++  RT            E L  G   F +K    +       +  L +K +  
Sbjct: 2675 NPSC-EVEEARTA----RVLDTVEEWLKKGATEFCIKVLCPYMPKIIERLEKLQRK-YGG 2728

Query: 203  VIHVKPVASRAESVEMFLL 221
             +   P+ SR  + EM+ +
Sbjct: 2729 GLVRVPL-SRNSTHEMYWV 2746


>gi|54399546|gb|AAV34160.1| polyprotein [St. Louis encephalitis virus]
          Length = 3430

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 40   QRAQLEGWR-------ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
            ++A+ EG R       +R + KL  I E+   ++   ++VDLG   G WS   A +    
Sbjct: 2565 RKARREG-RLTGGHPVSRGSAKLRWITER-GFVKPMGKVVDLGCGRGGWSYYCATLKHVQ 2622

Query: 93   ANNTRVVAIDILDMEPILGVKFFKF------DFLDLDSWEFIRQAIGGNPDLVLSDMAYP 146
                              G +  +       + + + S   +      + D VL D+   
Sbjct: 2623 EVKGFTKGG--------PGHEEPQLMQSYGWNLVHMKSGVDVFHKPAESADTVLCDIGES 2674

Query: 147  TIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-FLVKT---FQGGTTNDILCLLKKHFQK 202
                 +++  RT            E L  G   F +K    +       +  L +K +  
Sbjct: 2675 NPSC-EVEEARTA----RVLDTVEEWLKKGATEFCIKVLCPYMPKIIERLEKLQRK-YGG 2728

Query: 203  VIHVKPVASRAESVEMFLL 221
             +   P+ SR  + EM+ +
Sbjct: 2729 GLVRVPL-SRNSTHEMYWV 2746


>gi|296109553|ref|YP_003616502.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
           ME]
 gi|295434367|gb|ADG13538.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
           ME]
          Length = 274

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNA---------NNTRVVAIDILDMEPILGVKFFK 116
               R++D+ ++PG  +   A++ G+              + +  +I  M  IL      
Sbjct: 84  SPKDRVLDMCAAPGGKTTHLAQLMGNEGTILAVEISKERVKALKSNINRMN-ILNTIIIN 142

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA----ATFFALEM 172
            D      +   ++ +     L             +    + +  C           L++
Sbjct: 143 KDMRKYKEYLMKKKILFDKILLDAPCSGNIIKDKNRKVDEKDIEYCSLRQKELLNIGLDL 202

Query: 173 LNIGGDFL 180
           L  GG+ +
Sbjct: 203 LKPGGELV 210


>gi|145591596|ref|YP_001153598.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
 gi|145283364|gb|ABP50946.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
          Length = 252

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 17/81 (20%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           + + ++++   Y +      +R     K+ ++ +K+  + +  R++D+G+  G W+    
Sbjct: 17  QRYEDKYLRTEYYRTL----YR-----KIGEVLDKY--INAGMRVLDIGAGTGFWTAYMT 65

Query: 87  RITGSNANNTRVVAIDILDME 107
           +         RVVA+DI  M 
Sbjct: 66  KR------GARVVALDISPMS 80


>gi|86157525|ref|YP_464310.1| hemolysin A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774036|gb|ABC80873.1| hemolysin A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 246

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 29/148 (19%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           A  + + +R A KL +  +   +    R   DLG+S G ++ +  +         +V A+
Sbjct: 57  AAPQRYVSRGALKLEKALDAFPVDPRGRTCADLGASTGGFTDLLLQR-----GAAKVYAV 111

Query: 102 DILDMEPILGVKFFKFDFL-----DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           D+   +        + D         ++ +   + +G   +LV+ D++            
Sbjct: 112 DVGYGQLHP---RLRADARVVVRERENARQLTAETLGERVELVVGDLS-----------F 157

Query: 157 RTMSLCEAATFFALEMLNIGG--DFLVK 182
            ++ L   A      +L  GG    LVK
Sbjct: 158 ISLRLILPAVK---AILRPGGQAVLLVK 182


>gi|115433296|ref|XP_001216785.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114189637|gb|EAU31337.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 367

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 35/195 (17%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT----RVVAIDILDMEPILGVKFFKF 117
            +I      I+D+  +PG +   A               R      + ++    +     
Sbjct: 91  FRINSIRPSILDMCMAPGGFLATALESNPGARAVGFSLPRREGGHNVLLQRSPDISLKFL 150

Query: 118 DFL--------------DLDSWEFIRQAIGGN--PDLVLSDMA----YPTIGHRKIDHLR 157
           D                  D+ +F+ +        DLV+ D      +P   +R+    R
Sbjct: 151 DITMLAEDMGRFGIPNEHPDAGKFLPRQFTPEQAFDLVICDGQVLREHPRATYRESREAR 210

Query: 158 TMSLCEAATFFALEMLNIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKPVASR--- 212
              L        LE    GG  ++     +   +  +L   ++ F  V   K   +R   
Sbjct: 211 --RLILTQLALGLEHTRPGGSMIILLHKVEAPASARLLYTFEQ-FASVQLFK--HTRFHA 265

Query: 213 AESVEMFLLAKGFRK 227
             S   ++LA   RK
Sbjct: 266 KRSS-FYMLATNIRK 279


>gi|88602782|ref|YP_502960.1| hypothetical protein Mhun_1507 [Methanospirillum hungatei JF-1]
 gi|88188244|gb|ABD41241.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 184

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 14/119 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLDS 124
           +    ++D+G  PG ++ V A + G       V+A D+   M  +   K  +   +D   
Sbjct: 34  RPGMTVLDVGCGPGFFTGVMAGLVGPEGT---VIAADLQPEMLDLTKEKMIRKGLIDRVI 90

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA--LEMLNIGGDFLV 181
                       +    D A       ++   RT+        FA   + L  GG FLV
Sbjct: 91  LHKTASETLHLNESGFVDFAIGFHMVHEVPSPRTL--------FAEVFDCLKPGGIFLV 141


>gi|317404961|gb|EFV85324.1| hypothetical protein HMPREF0005_04545 [Achromobacter xylosoxidans
           C54]
          Length = 329

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 18/123 (14%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
             R +VD+G   G++S                V   +LD+ P++       +        
Sbjct: 158 PIRHLVDVGGGAGTYSIALCAARPD-------VTAQVLDLAPVV-------EITRETVRA 203

Query: 127 F-IRQAIGGNPDLVLSDM---AYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
             +   +         D    A   +    + H  +  +C +    A + L  GG  LV+
Sbjct: 204 AGLADRVSAKVADYRQDGFGEAADALLFSNVLHQESAQVCRSMLDRARQALRPGGTLLVQ 263

Query: 183 TFQ 185
            + 
Sbjct: 264 GYF 266


>gi|295115834|emb|CBL36681.1| NOL1/NOP2/sun family. [butyrate-producing bacterium SM4/1]
          Length = 428

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 25/134 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAI-------DILDMEPILGVKFFKF 117
           +   R++D+ ++PG  S    AR+ G     +  ++          L+M  I  +     
Sbjct: 66  KPGDRVLDICAAPGGKSTELGARLRGEGLLFSNDISNSRAKALLKNLEMAGIPNI----- 120

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDM----------AYPTI-GHRKIDHLRTMSLCEAAT 166
             +  ++ E + + +    D +L D               I  +R+      + +  A  
Sbjct: 121 -CVSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPIQRAIM 179

Query: 167 FFALEMLNIGGDFL 180
             A++ML  GG  L
Sbjct: 180 EEAVKMLRPGGYLL 193


>gi|268318119|ref|YP_003291838.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262335653|gb|ACY49450.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 237

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 32/127 (25%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVKFF 115
               ++DLG+  G    +AAR  G      RV+ ID+                +  V F 
Sbjct: 66  RGATVLDLGAGAGRDCLLAARQVGPEG---RVIGIDLTPEMVALARENARKMGVTNVIFR 122

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + D   L   +        + D+VLS+ A   +  +             A   A  +L  
Sbjct: 123 EGDITALPLPDA-------SVDVVLSNCAINLVPDKA-----------RAFVEAFRVLRP 164

Query: 176 GGDFLVK 182
           GG  LV 
Sbjct: 165 GGLLLVA 171


>gi|289167577|ref|YP_003445846.1| hypothetical protein smi_0731 [Streptococcus mitis B6]
 gi|288907144|emb|CBJ21978.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 434

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGFLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLAKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPNQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|302677735|ref|XP_003028550.1| hypothetical protein SCHCODRAFT_59939 [Schizophyllum commune H4-8]
 gi|300102239|gb|EFI93647.1| hypothetical protein SCHCODRAFT_59939 [Schizophyllum commune H4-8]
          Length = 316

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 22/118 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI----LDMEPILGVKFFKFDFL 120
           +    R+++ G+  G+W   AA++ GS     ++   DI        P   V F      
Sbjct: 83  ISPGDRVLESGAGSGAWIMEAAKVLGSE---VQIDGFDIEGRNFPRHPPSNVSFCLASVT 139

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           +      +  A       V             +         E A      +L  GG 
Sbjct: 140 E------LPSAWTNRYKFV---------HQSLLTAALQKPQWEIALSEIHRVLQPGGW 182


>gi|268325998|emb|CBH39586.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 188

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 26/157 (16%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R+ YKLL    +   L+  ++++++G  PG ++   A+I G       V A+D+  +   
Sbjct: 37  RNPYKLL----RAAGLKPGQKVLEVGCGPGFFTIPVAKIVGEEGF---VYAVDVHPLAI- 88

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF- 168
                           E IR+    N   +L++ +   +  R ID      L   A    
Sbjct: 89  ------------ERVKEKIRREGIKNITPILANASDTGLPDRSIDLAFLFGLQYIAGGLG 136

Query: 169 -----ALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
                    L  GG    +  +G     I  + +  F
Sbjct: 137 NVIAEIQRTLKDGGVLSFEKTRGSAKKLIAEVERGGF 173


>gi|171673121|gb|ACB47443.1| L polymerase protein [Vesicular stomatitis Alagoas virus]
          Length = 2108

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 15/117 (12%)

Query: 118  DFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL-EML 173
            D  D  +W+    +++ +G   DL+  DM        ++       L E      L E+L
Sbjct: 1735 DLSDPRTWKYFSKLKRDVGLTIDLITMDM--------EVRDPSITKLIEMNLKSHLYELL 1786

Query: 174  NIGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
               G  + KT+        ++IL ++   FQ+V  V+   S +++ E++ + +  ++
Sbjct: 1787 EQEGTLIYKTYGTYITEFDDNILTMIGPFFQQVDLVQTEFSSSQTSEIYFVGRRLKR 1843


>gi|296124583|gb|ADG95949.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124580|gb|ADG95947.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124577|gb|ADG95945.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124574|gb|ADG95943.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124571|gb|ADG95941.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124568|gb|ADG95939.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124536|gb|ADG95918.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124484|gb|ADG95884.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|296124481|gb|ADG95882.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|239635891|ref|ZP_04676914.1| methyltransferase, UbiE/COQ5 family [Staphylococcus warneri L37603]
 gi|239598515|gb|EEQ80989.1| methyltransferase, UbiE/COQ5 family [Staphylococcus warneri L37603]
          Length = 244

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 29/135 (21%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG-- 111
           KLL   +    ++   RI+D+G + G  +Q+AA   GS      +     L  + +    
Sbjct: 10  KLLDRAD----IKPGMRILDIGCATGEVTQLAAERVGSQGEVIGIDMNQTLLEKAVENNQ 65

Query: 112 ---VKFFKFDFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
              V +  +D     ++       IG    + L D                      A  
Sbjct: 66  YNHVSYQHYDIYQLPEALGQFDVIIGRRVLMYLPD-------------------VPKALR 106

Query: 168 FALEMLNIGGDFLVK 182
              + L   G F  +
Sbjct: 107 ILKDFLKPEGIFCFQ 121


>gi|160426357|gb|ABX40010.1| nonstructural polyprotein [Cloning vector pCHIK-37997ic]
 gi|160426360|gb|ABX40012.1| nonstructural polyprotein [Cloning vector pCHIK-37997-5GFP]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|156934195|ref|YP_001438111.1| cyclopropane fatty acyl phospholipid synthase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156532449|gb|ABU77275.1| hypothetical protein ESA_02022 [Cronobacter sakazakii ATCC BAA-894]
          Length = 430

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 24/146 (16%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           A+ A KL  I EK Q L+    ++D+G   G  +  AAR  G +     + A      + 
Sbjct: 199 AQQA-KLKLICEKLQ-LKPGMTLLDIGCGWGGLAAFAARHYGVSVTGVTISAEQQKMAQE 256

Query: 109 I---LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
               L V     D+ DLDS             +V   M           +          
Sbjct: 257 RCQGLDVTILLQDYRDLDSQ---------FDRIVSVGMFEHVGPKNYATYF--------- 298

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTND 191
              A   L   G FL+ T     T++
Sbjct: 299 -EVADRSLKPDGLFLLHTIGSRKTDN 323


>gi|149176530|ref|ZP_01855143.1| Trans-aconitate 2-methyltransferase [Planctomyces maris DSM 8797]
 gi|148844643|gb|EDL58993.1| Trans-aconitate 2-methyltransferase [Planctomyces maris DSM 8797]
          Length = 256

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 25/122 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EPILGVKFFKFDFL-- 120
           L++ RRIVD+G  PG+ + V +R       +    + ++L+   E    V +F+ D    
Sbjct: 29  LEAPRRIVDVGCGPGNSTAVLSRRWPQAELSGLDSSAEMLETARESQPAVHWFQVDISSW 88

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           + ++            DL+ S+     +   +    R MS            L  GG   
Sbjct: 89  EPET----------KYDLIFSNAVLQWVPDHEAIFPRLMS-----------FLVPGGALA 127

Query: 181 VK 182
           V+
Sbjct: 128 VQ 129


>gi|82020140|sp|Q5XXP4|POLN_CHIK3 RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|52352963|gb|AAU43880.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVIINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVVCVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|302509912|ref|XP_003016916.1| hypothetical protein ARB_05210 [Arthroderma benhamiae CBS 112371]
 gi|291180486|gb|EFE36271.1| hypothetical protein ARB_05210 [Arthroderma benhamiae CBS 112371]
          Length = 378

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 10/131 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-------LGVKFFKF 117
           +Q   +++D+G   G  ++  +  TG            I               V F K 
Sbjct: 108 IQRGMKVLDVGCGVGGPAREISTFTGCKVVGVNNNGYQIQRATAHAKKEGRSEDVSFVKS 167

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF+    +       G        D            H  ++       +    +L  GG
Sbjct: 168 DFMSPAIYTSFPDYCGTKEMDFPDDSFDAVYVIEATVHAPSLQGVYEQIY---RVLKPGG 224

Query: 178 DFLVKTFQGGT 188
            F V  +    
Sbjct: 225 TFGVYEWVMTD 235


>gi|297567034|ref|YP_003686006.1| Cyclopropane-fatty-acyl-phospholipid synthase [Meiothermus silvanus
           DSM 9946]
 gi|296851483|gb|ADH64498.1| Cyclopropane-fatty-acyl-phospholipid synthase [Meiothermus silvanus
           DSM 9946]
          Length = 415

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I  K + L+   R++D+G   G     AA+  G  A     + I + D +      
Sbjct: 169 KLEHICRKLR-LKPGERLLDVGCGWGGLVIYAAQRYGVEA-----LGITLSDAQLEEARA 222

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             K   L+        +A+       + D A        + H   + L     F     L
Sbjct: 223 RVKAVGLEDRVR---IEALDYRDIDGVFDKAASVGMAEHVGHQN-LELYFQKVF---AHL 275

Query: 174 NIGGDFLVKT 183
             GG F+   
Sbjct: 276 KPGGLFMHHV 285


>gi|115439355|ref|NP_001043957.1| Os01g0695100 [Oryza sativa Japonica Group]
 gi|113533488|dbj|BAF05871.1| Os01g0695100 [Oryza sativa Japonica Group]
          Length = 499

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 36/187 (19%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-----ILQS--NR 69
           V+ R  Q S   +   H  D  V+        +R+A     ++++ +     +L     +
Sbjct: 15  VEERKAQKS---YWEEHSKDLTVE---AMMLDSRAA----DLDKEERPEILSLLPPYEGK 64

Query: 70  RIVDLGSSPGSWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            +++LG+  G ++    +  G   +      V+  +           F   D        
Sbjct: 65  SVLELGAGIGRFTGELVKTAGHVLAMDFIESVIKKNESINGHHKNASFMCADVT------ 118

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTF 184
                    PDL++ D +   I    +    +    E      +  L +GG   F    F
Sbjct: 119 --------CPDLMIEDNSIDLIFSNWLLMYLSDEEVEKLVKRMVRWLKVGGYIFFRESCF 170

Query: 185 QGGTTND 191
                + 
Sbjct: 171 HQSGDSK 177


>gi|77166376|ref|YP_344901.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|76884690|gb|ABA59371.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
          Length = 215

 Score = 38.7 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 11/126 (8%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDF 119
           +H  L    +I+D+G   G  +Q+AA  +G +    +VV +D  L M  +   K  +   
Sbjct: 43  RHAQLSPGEQILDVGCGTGVLTQLAAEKSGPSG---KVVGVDPSLPMISLARKKAAR--- 96

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
               +       +G    L   +  +  +    + H     L          +L  GG  
Sbjct: 97  ----AQSQAEFKLGVVERLPFGNETFDVVLSSLMLHHLPAELKRQGLEEIHRVLKPGGRL 152

Query: 180 LVKTFQ 185
           L   F 
Sbjct: 153 LAVDFD 158


>gi|302405841|ref|XP_003000757.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261360714|gb|EEY23142.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 361

 Score = 38.7 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF----- 119
           L+    ++DLG+  G W +      G       +    I   E    V+F+  D      
Sbjct: 108 LERGAEVLDLGTGIGIWCEERFSFEG-------IDLSPIQSSEVPPNVRFYVDDMEHEQG 160

Query: 120 --LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              D  ++++I   +      V +           + H       ++A       L  GG
Sbjct: 161 WDFDGRTFDYI--HLRHTLHSVHNRPELLKRVLEWVSHPVQ---TKSALLTTASHLKPGG 215

Query: 178 DFLVKTFQ 185
            F V+ F+
Sbjct: 216 YFEVQEFE 223


>gi|298707780|emb|CBJ30211.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 439

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL-DLDSWE 126
              ++DLG   G    + +++ G       V   D         V F    F  D  + E
Sbjct: 139 GCNVLDLGCGAGRDCYIISKLVGPEGRVVGVDMTDEQLEVANRHVDFHTKSFGYDKPNVE 198

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           F +  I    DL L D  +  I    + +L      +A    A  +L  GG
Sbjct: 199 FKKGYIEKLADLGLPDNYFDVIVSNCVINLSPDK--DAVLREAYRVLKPGG 247


>gi|294633416|ref|ZP_06711975.1| methyltransferase [Streptomyces sp. e14]
 gi|292831197|gb|EFF89547.1| methyltransferase [Streptomyces sp. e14]
          Length = 283

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDS 124
           +  R +++GS  GS ++  A     +     V+A D+    ++P  G+   + D +    
Sbjct: 46  NGWRCLEIGSGGGSVARWLADRVAPDGE---VIATDLKPHHIQPRPGLTAVRHDAVTDPL 102

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            E          DLV++ +    I  R            A     +  L  GG   ++ F
Sbjct: 103 PEA-------AFDLVVARLVLQHIPER-----------LAVLDKLVRSLAPGGWLQIEEF 144

Query: 185 QGGTTNDILC---LLKKHFQKVIHVK 207
                  +L       + ++  +  K
Sbjct: 145 DTSYEPPLLAPDEESARLYETFLATK 170


>gi|317484743|ref|ZP_07943643.1| hemolysin TlyA family protein [Bilophila wadsworthia 3_1_6]
 gi|316923995|gb|EFV45181.1| hemolysin TlyA family protein [Bilophila wadsworthia 3_1_6]
          Length = 263

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 29/139 (20%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-- 102
           E + +R AYKLL   E  ++  +    +D G+S G ++    +         +V A+D  
Sbjct: 64  EKYVSRGAYKLLTAIEHFKLDVTGFVCLDAGASTGGFTDCLLQ-----HGAAKVYAVDVG 118

Query: 103 ----ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
                  M     V   +   L     E I +      D++++D+++             
Sbjct: 119 KEQLHERMRRDPRVISMEGTNLRTAPEELIPE----PVDIIVADVSF------------- 161

Query: 159 MSLCEAATFFALEMLNIGG 177
           +SL        +  L  GG
Sbjct: 162 ISLTL-ILPPCVRWLKEGG 179


>gi|302882839|ref|XP_003040325.1| hypothetical protein NECHADRAFT_44561 [Nectria haematococca mpVI
           77-13-4]
 gi|256721202|gb|EEU34612.1| hypothetical protein NECHADRAFT_44561 [Nectria haematococca mpVI
           77-13-4]
          Length = 332

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 48/181 (26%)

Query: 36  DPYVQRAQLEG-----WRARSAY---KLLQI---NEKHQILQ----------------SN 68
           D   +  +  G     +RA S Y    L++I   N +H+ L+                  
Sbjct: 31  DSIYEFHKENGRTYHAYRAGSYYYPNDLIEIERLNTQHETLKILLDGRSCLAPFDDETPP 90

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           R+++D+ +  G W+       G      R++  D+  ++       V+F     +D  + 
Sbjct: 91  RKVLDIATGSGHWAIDL----GDEFPEARIIGTDLSPIQSELVPPNVEF----IIDDATD 142

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E+ +            D     + H ++       +       A E L  GG    +  +
Sbjct: 143 EWPQGR----------DWCNFDLIHTRVTLGCWADMTTQIIQPAFERLRPGGWIECQELE 192

Query: 186 G 186
           G
Sbjct: 193 G 193


>gi|239996071|ref|ZP_04716595.1| putative RNA 2'-O-ribose methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 365

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 47  WRARSAYKLLQ-----INEK--HQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL       +++K   ++L+S  R VDLG+ PG W+ Q+  R     A +  +
Sbjct: 189 APSRSTLKLEDALVNMLSDKQQAKVLRSGGRAVDLGACPGGWTYQLVKRGMYVEAIDNGL 248

Query: 99  VAI 101
           VA 
Sbjct: 249 VAD 251


>gi|222619100|gb|EEE55232.1| hypothetical protein OsJ_03109 [Oryza sativa Japonica Group]
          Length = 509

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 36/187 (19%)

Query: 17  VKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ-----ILQS--NR 69
           V+ R  Q S   +   H  D  V+        +R+A     ++++ +     +L     +
Sbjct: 15  VEERKAQKS---YWEEHSKDLTVE---AMMLDSRAA----DLDKEERPEILSLLPPYEGK 64

Query: 70  RIVDLGSSPGSWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            +++LG+  G ++    +  G   +      V+  +           F   D        
Sbjct: 65  SVLELGAGIGRFTGELVKTAGHVLAMDFIESVIKKNESINGHHKNASFMCADVT------ 118

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTF 184
                    PDL++ D +   I    +    +    E      +  L +GG   F    F
Sbjct: 119 --------CPDLMIEDNSIDLIFSNWLLMYLSDEEVEKLVKRMVRWLKVGGYIFFRESCF 170

Query: 185 QGGTTND 191
                + 
Sbjct: 171 HQSGDSK 177


>gi|167572849|ref|ZP_02365723.1| hypothetical protein BoklC_23638 [Burkholderia oklahomensis C6786]
          Length = 248

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+ + R++D+G   G  S +AA + G       VVAID  D+             +D  +
Sbjct: 15  LRPSMRVLDIGCGTGGVSMLAAEMVGPTGT---VVAIDQSDIA------------IDAAT 59

Query: 125 WEFIRQAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGG--- 177
               R  +         L  +         I     M     A F   A   +  GG   
Sbjct: 60  ANAERARLHNIRFRACGLDQVEGVHSFDVVIARCVLMHQLHVAEFIRHAARFVKPGGFIA 119

Query: 178 ----DFLVKTFQGGTTN-------DILCLLKKHF 200
               DFL K       N       +IL   K+ F
Sbjct: 120 FHEPDFLRKPMSMPPINLWDSVAMEILDRCKRMF 153


>gi|120404265|ref|YP_954094.1| hemolysin A [Mycobacterium vanbaalenii PYR-1]
 gi|119957083|gb|ABM14088.1| hemolysin A [Mycobacterium vanbaalenii PYR-1]
          Length = 269

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDI 103
           + W +R A+KL+   +   +    RR +D G+S G +++V             V      
Sbjct: 60  DSWVSRGAHKLIGALDAFGLSVRARRCLDAGASTGGFTEVLLDREAREVVAVDVGYGQLA 119

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             +     V     D    +  E   +AIGG  DLV++D++
Sbjct: 120 WSLRTDPRVT--VMDRT--NVRELTPEAIGGPVDLVVADLS 156


>gi|94985074|ref|YP_604438.1| hypothetical protein Dgeo_0969 [Deinococcus geothermalis DSM 11300]
 gi|94555355|gb|ABF45269.1| SAM-dependent methyltransferase [Deinococcus geothermalis DSM
           11300]
          Length = 395

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 13/133 (9%)

Query: 58  INEKHQ------ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILDMEPIL 110
           ++++        +L      +D+ S  G +S  AAR         +  +A+ +L+ E   
Sbjct: 207 LDQRDNRRLMRALLSPGEGFLDVYSYTGGFSLHAARAGAKPVAIDKDQIALGVLEREARE 266

Query: 111 GVKFFKFDFLDL--DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
                  D      D+ E +            + +  PT+  RK D  R   +       
Sbjct: 267 NA----LDVGVRWGDALETLAALERERRVFGAAVLDPPTLAKRKEDVPRAKRIFTEGAKR 322

Query: 169 ALEMLNIGGDFLV 181
           AL ML  GG  L+
Sbjct: 323 ALRMLKPGGHLLI 335


>gi|301030819|gb|ADK47994.1| polyprotein [Yellow fever virus]
          Length = 3411

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 12/176 (6%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL   +E+   ++   R+ DLG   G W   AA     +      +       E 
Sbjct: 2562 SRGTAKLRWFHER-GYVKLEGRVTDLGCGRGGWCYYAAAQKEVSGVKGFTLGK--EGHEK 2618

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + V+   ++ +       + +      D +L D+   +      +  RTM         
Sbjct: 2619 PMNVQSLGWNIITFKDKTDVHRLEPVKCDTLLCDIG-ESSPSSVTEGERTM----RVLDT 2673

Query: 169  ALEMLNIGG-DFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L  G   F VK          + L LL++ F   +   P+ SR  + EM+ +
Sbjct: 2674 VEKWLGCGVESFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPL-SRNSTHEMYYV 2728


>gi|259909478|ref|YP_002649834.1| putative RNA 2'-O-ribose methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224965100|emb|CAX56632.1| RNA 2\'-O-ribose methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283479551|emb|CAY75467.1| putative RNA 2'-O-ribose methyltransferase mtfA [Erwinia pyrifoliae
           DSM 12163]
          Length = 366

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMWAVDLGACPGGWTYQLVQR------SMMVN 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|183600878|ref|ZP_02962371.1| hypothetical protein PROSTU_04478 [Providencia stuartii ATCC 25827]
 gi|188019661|gb|EDU57701.1| hypothetical protein PROSTU_04478 [Providencia stuartii ATCC 25827]
          Length = 365

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 13/67 (19%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 185 APSRSTLKLEEAFHIFIPYDEWDERLASGMNAVDLGACPGGWTYQLVKR------SMMVH 238

Query: 100 AIDILDM 106
           A+D   M
Sbjct: 239 AVDNGPM 245


>gi|205737936|sp|P11079|LMBD2_REOVD RecName: Full=Outer capsid protein lambda-2; Short=Lambda2;
           AltName: Full=Lambda2(Cap); Includes: RecName: Full=mRNA
           guanylyltransferase; Includes: RecName: Full=mRNA
           (guanine-N(7)-)-methyltransferase
 gi|9955257|pdb|1EJ6|A Chain A, Reovirus Core
 gi|82408282|pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1289

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           +   I  + P   V+ F +D       +  R    G+   V SD+     GH  +    +
Sbjct: 534 IQGKISGVPPPSSVRQFGYDVARGAIVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--IS 591

Query: 159 MSLCEAATFFALEMLNIGGDFLVKT-FQGGTTNDILCL-LKKHFQKVIHVKPVASRAESV 216
             L E+     +     GG F+VK  F        +   +  +    + +KP  +   +V
Sbjct: 592 SGLVESLLSSCMHATAPGGSFVVKINFPTRPVWHYIEQKILPNITSYMLIKPFVT--NNV 649

Query: 217 EMFLLAKG 224
           E+F +A G
Sbjct: 650 ELFFVAFG 657


>gi|170583757|ref|XP_001896724.1| Ubiquinone biosynthesis methyltransferase ZK652.9 [Brugia malayi]
 gi|158596000|gb|EDP34425.1| Ubiquinone biosynthesis methyltransferase ZK652.9, putative [Brugia
           malayi]
          Length = 283

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L +N  ++D+    G  +  A R   S      V   DI +    +G    +    D   
Sbjct: 85  LTANTAMIDVAGGTGDIAFRAVRDIQSKKGKGSVTVCDINENMLKVGQ---QRAIDDPSV 141

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            +   + + G+ + +  D     +        R  +  +     A  +L  GG F    F
Sbjct: 142 LKARLKWVRGDAEALPFDENSFDVYTIAFGI-RNCTNIDKVLREAYRVLRPGGKFACLEF 200

Query: 185 QGGTTNDILCLLKKHFQK 202
                N +L      +  
Sbjct: 201 --SHINPLLKQFYDFYSF 216


>gi|310766615|gb|ADP11565.1| putative RNA 2'-O-ribose methyltransferase [Erwinia sp. Ejp617]
          Length = 366

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMWAVDLGACPGGWTYQLVQR------SMMVN 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|292487209|ref|YP_003530081.1| putative RNA 2'-O-ribose methyltransferase mtfA [Erwinia amylovora
           CFBP1430]
 gi|292900415|ref|YP_003539784.1| RNA 2'-O-ribose methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200263|emb|CBJ47391.1| putative RNA 2'-O-ribose methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291552628|emb|CBA19673.1| putative RNA 2'-O-ribose methyltransferase mtfA [Erwinia amylovora
           CFBP1430]
 gi|312171310|emb|CBX79569.1| putative RNA 2'-O-ribose methyltransferase mtfA [Erwinia amylovora
           ATCC BAA-2158]
          Length = 366

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHTFIPADEWDERLASGMWAVDLGACPGGWTYQLVQR------SMMVN 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|289606854|emb|CBI60981.1| unnamed protein product [Sordaria macrospora]
          Length = 333

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 24/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           L+   +++DLG+  G W    A        +  +  +D+  ++P      V+FF  D  D
Sbjct: 92  LEDGGQVLDLGTGTGIWPMQLAEEYP----DAVITGVDLSPIQPSFVPENVRFFVDDIED 147

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
                  +            D  +       +   +++          L  L  GG F V
Sbjct: 148 EWVDPENKY-----------DYIHLRFALHTLKDRKSL------MERVLRHLKPGGYFEV 190

Query: 182 K 182
           +
Sbjct: 191 Q 191


>gi|312115340|ref|YP_004012936.1| methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
 gi|311220469|gb|ADP71837.1| Methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
          Length = 275

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 58  INEKHQIL-QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------EPIL 110
           I+E   ++     R++D+   PG+ +Q   R          V AI+I +       +   
Sbjct: 50  IDELVSLIGHEGGRVLDVACGPGASTQRLCRSYEPRN----VTAINISEAQLASARDRAP 105

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           G  F K D     +      A   +  + +    +           R   L EAA     
Sbjct: 106 GCTFIKMD-----AAHLDFPAESFDAVMCVEAAFHFDT--------RQSFLREAA----- 147

Query: 171 EMLNIGGDFL--VKTFQG 186
            +L  GG  +     F+G
Sbjct: 148 RVLKPGGTLVMTDMLFRG 165


>gi|188534854|ref|YP_001908651.1| putative RNA 2'-O-ribose methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|226705361|sp|B2VFX4|RLMM_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|188029896|emb|CAO97780.1| Putative RNA 2'-O-ribose methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 366

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +        +E  + L S    VDLG+ PG W+    +       +  V 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLASGMWAVDLGACPGGWTYQLVQR------SMMVN 237

Query: 100 AIDILDMEP 108
           A+D   M P
Sbjct: 238 AVDNGPMAP 246


>gi|294341531|emb|CAZ89948.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Thiomonas sp. 3As]
          Length = 224

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 15/117 (12%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI----LDMEPILGVKFFKFDFLDLDS 124
           +R+++LG+  G++++      G +  N  VV  D     L  +    ++  + D   L +
Sbjct: 61  QRVIELGAGTGAFTRALIE-HGLHCANLLVVERDASLHGLLRQRFPDLQLIQADACALRT 119

Query: 125 WEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                   +GG  D V+S +   ++        R++         A  +L  GG F+
Sbjct: 120 AAQASGYLLGGPADAVISGLGLLSMPRAT---QRSI------LNEAFSVLRPGGCFV 167


>gi|304413297|ref|ZP_07394770.1| putative methyltransferase [Candidatus Regiella insecticola LSR1]
 gi|304284140|gb|EFL92533.1| putative methyltransferase [Candidatus Regiella insecticola LSR1]
          Length = 367

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 47  WRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             +RS  KL +       I+E    L S    VDLG+ PG W+    +       + RV 
Sbjct: 184 APSRSTLKLEEAFHVFIPIDEWEDRLASGMHAVDLGACPGGWTYQLVQR------SMRVQ 237

Query: 100 AIDI 103
           AID 
Sbjct: 238 AIDN 241


>gi|302663730|ref|XP_003023503.1| hypothetical protein TRV_02353 [Trichophyton verrucosum HKI 0517]
 gi|291187505|gb|EFE42885.1| hypothetical protein TRV_02353 [Trichophyton verrucosum HKI 0517]
          Length = 378

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 10/131 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-------LGVKFFKF 117
           +Q   +++D+G   G  ++  +  TG            I               V F K 
Sbjct: 108 IQRGMKVLDVGCGVGGPAREISTFTGCKVVGVNNNGYQIQRATAHAKKEGRSEDVSFVKS 167

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF+    +       G        D            H  ++       +    +L  GG
Sbjct: 168 DFMSPAIYTSFPNYCGTKEMDFPDDSFDAVYVIEATVHAPSLQGVYEQIY---RVLKPGG 224

Query: 178 DFLVKTFQGGT 188
            F V  +    
Sbjct: 225 TFGVYEWVMTD 235


>gi|221229056|gb|ACM09908.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCADHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|94496910|ref|ZP_01303484.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. SKA58]
 gi|94423586|gb|EAT08613.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. SKA58]
          Length = 391

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILGVKFFKF 117
           +S   +VDL +  G  +   A    + A   R++A D        +       G  F   
Sbjct: 198 RSGMTVVDLCAGAGGKTLALA---AAMAGQGRLIAADTIRSRLARLEPRAERAGATFIDT 254

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA-----------AT 166
             LD          +    D+VL D      G  + +      L  A             
Sbjct: 255 LLLDQSHEARGLAHLQEQADVVLVDAPCSGTGTWRRNPEARWRLTPARLDRLVAEQARIL 314

Query: 167 FFALEMLNIGGDFL 180
            FA  ++  GG  +
Sbjct: 315 DFAAPLVRPGGLLV 328


>gi|163749522|ref|ZP_02156770.1| hypothetical protein KT99_04624 [Shewanella benthica KT99]
 gi|161330931|gb|EDQ01858.1| hypothetical protein KT99_04624 [Shewanella benthica KT99]
          Length = 360

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 42/175 (24%)

Query: 40  QRAQLEGWRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWS-QVAARITGS 91
           + A      +RS  KL +        +E    L S    VDLG+ PG W+ Q+  R    
Sbjct: 178 KMAAE--APSRSTLKLDEAFIHFIPKDEHETRLTSGMHTVDLGACPGGWTYQLVRRGMFV 235

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            A +   +   ++D      VK ++ D    +        +       + DM        
Sbjct: 236 AAVDNGAIDQALMDTGQ---VKHYQADGFRFEPPRKNIYWL-------VCDMIEKPSRVA 285

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           ++     +                 G F    F      ++   +K  ++ V  +
Sbjct: 286 ELIEAWAI----------------NGWFKEAIF------NLKLPMKSRYKDVSII 318


>gi|116327488|ref|YP_797208.1| rRNA methylase/hemolysin-tylA [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331898|ref|YP_801616.1| rRNA methylase/hemolysin-tylA [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120232|gb|ABJ78275.1| rRNA methylase/Hemolysin-tylA [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125587|gb|ABJ76858.1| rRNA methylase/Hemolysin-tylA [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 259

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R AYKLL+  E   +    +  VDLG+S G ++QV            +V A D+
Sbjct: 62  YVSRGAYKLLRAFEIFPLQVDGKLCVDLGASTGGFTQVLLE-----KGAWKVFACDV 113


>gi|295091824|emb|CBK77931.1| tRNA and rRNA cytosine-C5-methylases [Clostridium cf.
           saccharolyticum K10]
          Length = 538

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 25/134 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVA-ARITGSNANNTRVVAI-------DILDMEPILGVKFFKF 117
           +   R++D+ ++PG  S    AR+ G     +  ++          L+M  I  +     
Sbjct: 176 KPGDRVLDICAAPGGKSTELGARLRGEGLLFSNDISNSRAKALLKNLEMAGIPNI----- 230

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDM----------AYPTI-GHRKIDHLRTMSLCEAAT 166
             +  ++ E + + +    D +L D               I  +R+      + +  A  
Sbjct: 231 -CVSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPIQRAIM 289

Query: 167 FFALEMLNIGGDFL 180
             A++ML  GG  L
Sbjct: 290 EEAVKMLRPGGYLL 303


>gi|13473478|ref|NP_105045.1| fatty acid synthase, cyclopropane-fatty-acyl-phospholipid synthase
           [Mesorhizobium loti MAFF303099]
 gi|14024227|dbj|BAB50831.1| fatty acid synthase; cyclopropane-fatty-acyl-phospholipid synthase
           [Mesorhizobium loti MAFF303099]
          Length = 422

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 17/159 (10%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
            A KL  I  K + L+   R++D+G   G+    AA+  G   +      + + + +  L
Sbjct: 172 QADKLDHICRKLR-LKPGERLLDIGCGWGAMLIHAAKNYGVTGH-----GVSLSEAQTKL 225

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
             +  + + L+      I+                       I     + L   A +F+ 
Sbjct: 226 ARERIRAEGLEDKITIEIKSYAELTGTFDKI---------SSIGMFEHLGLANHAAYFST 276

Query: 171 --EMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
              +L  GG +L       +  DI   L+K  +    +K
Sbjct: 277 VHRLLKPGGIYLHHAITRRSKGDIKKTLRKGPEYKALIK 315


>gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 443

 Score = 38.3 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-----ILDMEPI---LGVKFFKF 117
           +    +VDL ++PG  +   A +  +     ++ A D     I  M+ I    GV+  + 
Sbjct: 249 EPGETVVDLAAAPGGKTAHMAELMKNEG---KIYAFDVDSERIKRMKQILRWAGVEIAEV 305

Query: 118 DFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAATFF 168
             LD   + EF+ + I     L     +  TI          R+ +  + + L +     
Sbjct: 306 KKLDGRKAPEFLGEKIADRVLLDAPCTSDGTIAKNPELRWRLREKNIPKVVQLQKELIES 365

Query: 169 ALEMLNIGGDFL 180
           A ++L  GG  L
Sbjct: 366 AWKLLKPGGRLL 377


>gi|283795445|ref|ZP_06344598.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
 gi|291077106|gb|EFE14470.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1]
          Length = 489

 Score = 38.3 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 18/160 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQV-AARITGSN--------ANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  +   A+R+ G              R+++ +   M    G  F +
Sbjct: 100 KPGDRVLDLCAAPGGKTSHIASRLQGKGFLLSNEIHPARARILSQNAERMGIANGAVFNE 159

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA----ATFFALEM 172
                  ++      I  +       M     G R       + LC          A  M
Sbjct: 160 DSARLSAAFPEYFDKIVVDAPCSGEGMFRKDEGARAEWSPDKVRLCAQRQAEILENASAM 219

Query: 173 LNIGGDF---LVKTFQGGTTNDILCLLKKH--FQKVIHVK 207
           L  GG                 +   LK H  F+     K
Sbjct: 220 LKPGGTMAYSTCTFSPEEDEQAVEAFLKAHPEFKIKKVKK 259


>gi|328955327|ref|YP_004372660.1| Fmu (Sun) domain protein [Coriobacterium glomerans PW2]
 gi|328455651|gb|AEB06845.1| Fmu (Sun) domain protein [Coriobacterium glomerans PW2]
          Length = 325

 Score = 38.3 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 67  SNRRIVDLGSSPGS-WSQVA------ARITGSNANNTRVVAIDI-LDMEPILGVKFFKFD 118
               ++D+ ++PG   SQ+A      ARI     +  R   ++  L    + GV   + D
Sbjct: 120 PGADVLDMCAAPGGKTSQIAALTKGTARICACELHAPRAARLEHNLAKLKVSGVTLMRCD 179

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA----TFFALEMLN 174
              LD      Q +   P      +A              ++    A       AL +L 
Sbjct: 180 ARRLDPLFSFDQILLDAPCTGSGTVAAGDSRGLARITPMLLAKVSRAQAALLDRALTVLK 239

Query: 175 IGGDFL---VKTFQGGTTNDILCLLKKH 199
            GG  +            + I   +++H
Sbjct: 240 TGGTLIYSTCSVLPAENEDQIRRAIQRH 267


>gi|194367807|ref|YP_002030417.1| PUA domain-containing protein [Stenotrophomonas maltophilia R551-3]
 gi|194350611|gb|ACF53734.1| PUA domain containing protein [Stenotrophomonas maltophilia R551-3]
          Length = 389

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 21/142 (14%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGV--------KFFKF 117
            + ++DL  + G ++  AA    S+     VV IDI +  ++   G         KF + 
Sbjct: 216 GKSVLDLCCNTGGFAVYAAARGASD-----VVGIDIDEDVIQIAKGNSRLNNVRPKFIQS 270

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D      W       G   D+V+ D A  T    ++       L       AL ++  GG
Sbjct: 271 DIF---PWLRDAANRGEQYDVVILDPAKMTRDRDQVITALKKYLDMN--KLALGVVKPGG 325

Query: 178 DFLVKTFQG-GTTNDILCLLKK 198
            F   +  G    +  L +L++
Sbjct: 326 LFATFSCTGLVAEDQFLDMLRR 347


>gi|20127134|gb|AAM10974.1|AF492770_1 nonstructural polyprotein 1234 [Sindbis virus]
          Length = 2508

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 169  ALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            AL  LN GG  +VK +     N  D++  L + F +V   +P      + EMFL+   FR
Sbjct: 1260 ALNCLNPGGTLVVKAYGYADRNSEDVVTALARKFVRVSAARPDCV-TSNTEMFLI---FR 1315

Query: 227  K 227
            +
Sbjct: 1316 Q 1316


>gi|20127135|gb|AAM10975.1| nonstructural polyprotein 123 [Sindbis virus]
          Length = 1891

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 169  ALEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
            AL  LN GG  +VK +     N  D++  L + F +V   +P      + EMFL+   FR
Sbjct: 1260 ALNCLNPGGTLVVKAYGYADRNSEDVVTALARKFVRVSAARPDCV-TSNTEMFLI---FR 1315

Query: 227  K 227
            +
Sbjct: 1316 Q 1316


>gi|20086761|gb|AAM10629.1|AF429428_2 nonstructural polyprotein [Sindbis virus]
          Length = 1870

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 18/116 (15%)

Query: 122  LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEML 173
              +      A G  P      +        +  H +           L  +A       L
Sbjct: 1209 PGADRNYNLAFGFPPQSRYDMVFVKIGTKYRNHHFQQCEDHAATLKTLSSSALNC----L 1264

Query: 174  NIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            N GG  +VK +     N  D++  L + F +V   +P      + EMFL+   FR+
Sbjct: 1265 NPGGTLVVKAYGYADRNSEDVVTALARKFVRVSAARPECV-TSNTEMFLI---FRQ 1316


>gi|20086760|gb|AAM10628.1|AF429428_1 nonstructural protein [Sindbis virus]
          Length = 2487

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 18/116 (15%)

Query: 122  LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAATFFALEML 173
              +      A G  P      +        +  H +           L  +A       L
Sbjct: 1209 PGADRNYNLAFGFPPQSRYDMVFVKIGTKYRNHHFQQCEDHAATLKTLSSSALNC----L 1264

Query: 174  NIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK 227
            N GG  +VK +     N  D++  L + F +V   +P      + EMFL+   FR+
Sbjct: 1265 NPGGTLVVKAYGYADRNSEDVVTALARKFVRVSAARPECV-TSNTEMFLI---FRQ 1316


>gi|321171306|gb|ADW76863.1| core-spike protein lambda-2 [Mammalian orthoreovirus 3]
          Length = 513

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 16/123 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV----VAIDILDMEPILGVKFFKFDFL 120
           L++ + +   G+S G           S A    V    +   I  + P   V+ F +D  
Sbjct: 51  LRAGQSVAYFGASAG----------HSGAGQPLVVEPWIQGKISGVPPPSSVRQFGYDVA 100

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
                +  R    G+   V SD+     GH  +    +  L E+     +     GG F+
Sbjct: 101 RGAVVDLARPFPSGDYQFVYSDVDQVVDGHDDLS--ISSGLVESLFSSCMHATAPGGSFV 158

Query: 181 VKT 183
           VK 
Sbjct: 159 VKI 161


>gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2]
 gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2]
          Length = 450

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 29/136 (21%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILGVKFFKF 117
           +    IVD+ S+PG  +   A + G   N  +++A D        I +    LG+   K 
Sbjct: 254 KPGEFIVDVCSAPGGKTTHIAELMG---NRGQIIARDIHEHKIRLINEASSRLGIDIIKA 310

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIG-------------HRKIDHLRTMSLCEA 164
           +  D    +    ++    D VL D   P  G                 D    + L E 
Sbjct: 311 EIFDASEQDA---SLTDKADRVLVD--APCTGLGIIRRKPDIKWARNSNDLNEIVKLQEK 365

Query: 165 ATFFALEMLNIGGDFL 180
               + + +  GG  +
Sbjct: 366 ILNASSKYVKPGGVLV 381


>gi|294139902|ref|YP_003555880.1| hypothetical protein SVI_1131 [Shewanella violacea DSS12]
 gi|293326371|dbj|BAJ01102.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 360

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 42/175 (24%)

Query: 40  QRAQLEGWRARSAYKLLQ-------INEKHQILQSNRRIVDLGSSPGSWS-QVAARITGS 91
           + A      +RS  KL +        +E    L S    VDLG+ PG W+ Q+  R    
Sbjct: 178 KMASE--APSRSTLKLDEAFIHFIPKDEHETRLTSGMHSVDLGACPGGWTYQLVRRGMFV 235

Query: 92  NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
            A +   +   ++D      VK ++ D    +        +       + DM        
Sbjct: 236 AAVDNGAMDQGLMDTGQ---VKHYQADGFRFEPPRKNIYWL-------VCDMIEKPSRVA 285

Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
           ++     +                 G F    F      ++   +K  ++ V  +
Sbjct: 286 ELIEAWAI----------------NGWFKEAIF------NLKLPMKSRYKDVSII 318


>gi|294890358|ref|XP_002773145.1| hypothetical protein Pmar_PMAR026973 [Perkinsus marinus ATCC 50983]
 gi|239878106|gb|EER04961.1| hypothetical protein Pmar_PMAR026973 [Perkinsus marinus ATCC 50983]
          Length = 473

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 20/138 (14%)

Query: 49  ARSAYKLLQINEKHQ----ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
            ++ YKL +   +        +     +D+G+SPG WS+        N    R++A+D  
Sbjct: 297 CKAEYKLAEAFRRFGYEFGEKRDEMTAIDVGASPGGWSRYLY-----NEGVGRIIAVDKG 351

Query: 105 DMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           +++        +  D L  ++ + + +  G    L +       +    +    +     
Sbjct: 352 EVDCSKSDGKIEHWDMLGQEAIQKLLEHEGHRESLDV------YVCDANLPPPES----L 401

Query: 164 AATFFALEMLNIGGDFLV 181
           A    A E++  G   +V
Sbjct: 402 AMLRQASELIKPGAYVVV 419


>gi|223994053|ref|XP_002286710.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220978025|gb|EED96351.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 517

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           ++   +++DL +SPGS +  A  I  S+A   RV+A D+
Sbjct: 268 MKGGSKVLDLCASPGSKTMQALEIVASSAKKGRVIANDV 306


>gi|113868192|ref|YP_726681.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
 gi|113526968|emb|CAJ93313.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
          Length = 282

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 22/137 (16%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-----LDMEPILGVKFFKFDF 119
           ++   R++DL    GS S  AA   G+      VVA DI       +         +   
Sbjct: 45  IRPGMRVLDLACGAGSQSIQAAMRVGAGGE---VVASDISGTMLEHVRRNAARAGLQNIE 101

Query: 120 LDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
               + + + + +   +  +    +                     A      +L  G  
Sbjct: 102 TLECAVDELDETLAPFDAAMCRLGLMLFPSPGE-------------ALESVRRVLKPGAR 148

Query: 179 FLVKTFQGGTTNDILCL 195
           F    F     N  +  
Sbjct: 149 FAALVFTTPANNPFMAQ 165


>gi|303287420|ref|XP_003062999.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455635|gb|EEH52938.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 359

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 48  RARSAYKLLQINEKHQILQSNR-RIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
             R+ YKL +   + ++      R VD+G+SPG W+   AR   +      V AID
Sbjct: 155 PCRAFYKLQEACLRARVTVERDWRCVDVGASPGGWTHYIARRLDAERG-GVVYAID 209


>gi|223937763|ref|ZP_03629664.1| Methyltransferase type 11 [bacterium Ellin514]
 gi|223893556|gb|EEF60016.1| Methyltransferase type 11 [bacterium Ellin514]
          Length = 249

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+    + D+G+  G +++  A+  G+N     V A+DI   M  +L  K  + D  ++ 
Sbjct: 91  LKPGEAVADIGAGTGYYTRRLAQKVGTNGV---VFAVDIQPEMLEMLTNKMTRMDIHNVK 147

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               +         +  +D+      + + DH   M      T   ++ L  GG  +   
Sbjct: 148 PV--LGTITDPRLPVNSTDLILMVDVYHEFDHPYEM------TEAMIKALKPGGRIVFVE 199

Query: 184 FQGGT 188
           F+G  
Sbjct: 200 FRGED 204


>gi|124389458|gb|ABN10892.1| orf1ab polyprotein [Bat coronavirus HKU5-3]
          Length = 7179

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS     + +      +  ++  D+ +      +  F  D + +          
Sbjct: 6946 DKGVAPGS-----SVLRQWLPTDAILIDNDLNEYVSDADITLF-GDCVTVRV-------- 6991

Query: 133  GGNPDLVLSDMA-YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   DL++SDM    T    + +  + +        F    L +GG   +K  +   + +
Sbjct: 6992 GQQVDLLISDMYDPSTKVVGETNEAKALFFVYL-CNFIKNNLALGGSVAIKITEHSWSAE 7050

Query: 192  ILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
            +  L+ +  +  V      AS   S E FL+   +
Sbjct: 7051 LYELMGRFAWWTVFCTNANAS---SSEGFLIGINY 7082


>gi|124389448|gb|ABN10883.1| orf1ab polyprotein [Bat coronavirus HKU5-2]
          Length = 7179

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS     + +      +  ++  D+ +      +  F  D + +          
Sbjct: 6946 DKGVAPGS-----SVLRQWLPTDAILIDNDLNEYVSDADITLF-GDCVTVRV-------- 6991

Query: 133  GGNPDLVLSDMA-YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   DL++SDM    T    + +  + +        F    L +GG   +K  +   + +
Sbjct: 6992 GQQVDLLISDMYDPSTKVVGETNEAKALFFVYL-CNFIKNNLALGGSVAIKITEHSWSAE 7050

Query: 192  ILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
            +  L+ +  +  V      AS   S E FL+   +
Sbjct: 7051 LYELMGRFAWWTVFCTNANAS---SSEGFLIGINY 7082


>gi|126030123|ref|YP_001039961.1| orf1ab polyprotein [Bat coronavirus HKU5]
 gi|190360099|sp|P0C6W4|R1AB_BCHK5 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:
            Full=ORF1ab polyprotein; Contains: RecName:
            Full=Non-structural protein 1; Short=nsp1; AltName:
            Full=Leader protein; Contains: RecName:
            Full=Non-structural protein 2; Short=nsp2; AltName:
            Full=p65 homolog; Contains: RecName: Full=Non-structural
            protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName:
            Full=Papain-like proteinase; Short=PL-PRO; Contains:
            RecName: Full=Non-structural protein 4; Short=nsp4;
            Contains: RecName: Full=3C-like proteinase;
            Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains:
            RecName: Full=Non-structural protein 6; Short=nsp6;
            Contains: RecName: Full=Non-structural protein 7;
            Short=nsp7; Contains: RecName: Full=Non-structural
            protein 8; Short=nsp8; Contains: RecName:
            Full=Non-structural protein 9; Short=nsp9; Contains:
            RecName: Full=Non-structural protein 10; Short=nsp10;
            AltName: Full=Growth factor-like peptide; Short=GFL;
            Contains: RecName: Full=RNA-directed RNA polymerase;
            Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains:
            RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13;
            Contains: RecName: Full=Exoribonuclease; Short=ExoN;
            AltName: Full=nsp14; Contains: RecName:
            Full=Uridylate-specific endoribonuclease; AltName:
            Full=NendoU; AltName: Full=nsp15; Contains: RecName:
            Full=Putative 2'-O-methyl transferase; AltName:
            Full=nsp16
 gi|124389438|gb|ABN10874.1| orf1ab polyprotein [Bat coronavirus HKU5-1]
          Length = 7182

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS     + +      +  ++  D+ +      +  F  D + +          
Sbjct: 6949 DKGVAPGS-----SVLRQWLPTDAILIDNDLNEYVSDADITLF-GDCVTVRV-------- 6994

Query: 133  GGNPDLVLSDMA-YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   DL++SDM    T    + +  + +        F    L +GG   +K  +   + +
Sbjct: 6995 GQQVDLLISDMYDPSTKVVGETNEAKALFFVYL-CNFIKNNLALGGSVAIKITEHSWSAE 7053

Query: 192  ILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
            +  L+ +  +  V      AS   S E FL+   +
Sbjct: 7054 LYELMGRFAWWTVFCTNANAS---SSEGFLIGINY 7085


>gi|124389468|gb|ABN10901.1| orf1ab polyprotein [Bat coronavirus HKU5-5]
          Length = 7179

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS     + +      +  ++  D+ +      +  F  D + +          
Sbjct: 6946 DKGVAPGS-----SVLRQWLPTDAILIDNDLNEYVSDADITLF-GDCVTVRV-------- 6991

Query: 133  GGNPDLVLSDMA-YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
            G   DL++SDM    T    + +  + +        F    L +GG   +K  +   + +
Sbjct: 6992 GQQVDLLISDMYDPSTKVVGETNEAKALFFVYL-CNFIKNNLALGGSVAIKITEHSWSAE 7050

Query: 192  ILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
            +  L+ +  +  V      AS   S E FL+   +
Sbjct: 7051 LYELMGRFAWWTVFCTNANAS---SSEGFLIGINY 7082


>gi|66805089|ref|XP_636277.1| hypothetical protein DDB_G0289355 [Dictyostelium discoideum AX4]
 gi|60464630|gb|EAL62764.1| hypothetical protein DDB_G0289355 [Dictyostelium discoideum AX4]
          Length = 630

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 48  RARSAYKLLQINEKHQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANN 95
            +R+  KL++     Q++         IV+LGSSPG W+ +  R+   + ++
Sbjct: 435 PSRAYKKLIE---SFQLMGKTPTPGSTIVELGSSPGGWTSILNRLYEYDEDH 483


>gi|305666849|ref|YP_003863136.1| cyclopropane-fatty-acyl-phospholipid synthase [Maribacter sp.
           HTCC2170]
 gi|88709073|gb|EAR01307.1| cyclopropane-fatty-acyl-phospholipid synthase [Maribacter sp.
           HTCC2170]
          Length = 295

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 32/130 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PI 109
           +   ++    ++DLGS  G+   VA   TGS     +V+ ID   +              
Sbjct: 69  EFAKIKKGDTVIDLGSGAGNDCFVARHETGSEG---KVLGIDFTPIMIEKARINAEKLGY 125

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V+F + D   +   + +        D+++S+     + ++                  
Sbjct: 126 NNVEFREGDIDAMPVSDEV-------ADVIVSNCVLNLVPNKNKVIGE-----------M 167

Query: 170 LEMLNIGGDF 179
             +L  GG F
Sbjct: 168 FRVLKPGGHF 177


>gi|56698829|gb|AAW23129.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 35/241 (14%)

Query: 3    KPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQ--------LEGWR------ 48
            K    S    L +K K +  Q      L+R   D Y +            EG +      
Sbjct: 2489 KRGTGSQGETLGEKWKKKLNQ------LSRKEFDLYKKSGITEVDRTEAKEGLKRGEVTH 2542

Query: 49   ---ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
               +R + KL  + E++ ++    R++DLG   G WS   A +                +
Sbjct: 2543 HAVSRGSAKLQWLVERNMVIPEG-RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE 2601

Query: 106  MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
             EP+  +  + ++ + L S + +        D +L D+   +     ++  RT+      
Sbjct: 2602 -EPVP-MSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIG-ESSPSPTVEESRTI----RV 2654

Query: 166  TFFALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
                   L     F +K       T  + L  L++    ++   P+ SR  + EM+ ++ 
Sbjct: 2655 LKMVEPWLKNN-QFCIKVLNPYMPTVIEYLERLQRKHGGMLVRNPL-SRNSTHEMYWISN 2712

Query: 224  G 224
            G
Sbjct: 2713 G 2713


>gi|323698332|ref|ZP_08110244.1| hemolysin A [Desulfovibrio sp. ND132]
 gi|323458264|gb|EGB14129.1| hemolysin A [Desulfovibrio desulfuricans ND132]
          Length = 248

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 17/133 (12%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R AYKLL   E+  +  + +  +D G+S G ++    +        TRV A+D+     
Sbjct: 65  SRGAYKLLTAIEEFDLDFAGKVALDAGASTGGFTDCLLQF-----GATRVYAVDV----- 114

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             G                +      N      D+    +     D              
Sbjct: 115 --GYGQLHEKLRQDG---RVVNLERTNVRHAEPDLIPEPVDVITADVSFIS--LTKILPA 167

Query: 169 ALEMLNIGGDFLV 181
            L+ L  GG+ +V
Sbjct: 168 CLQFLRPGGELVV 180


>gi|303248880|ref|ZP_07335129.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302489749|gb|EFL49682.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 191

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
            +++     VD+G  PG ++   AR+ G N    RV+A+D+ +
Sbjct: 40  GLVREGDTAVDIGCGPGFFTLPLARLVGRNG---RVIAVDLQE 79


>gi|293374841|ref|ZP_06621143.1| NOL1/NOP2/sun family protein [Turicibacter sanguinis PC909]
 gi|292646510|gb|EFF64518.1| NOL1/NOP2/sun family protein [Turicibacter sanguinis PC909]
          Length = 455

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 27/135 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNA---------NNTRVVAIDILDMEPILGVKFFK 116
           +   +++DL ++PG  S   A   G               ++++ +I  M    GVK   
Sbjct: 100 KPGEKVLDLCAAPGGKSTHVASQLGQKGLLVANEIYPQRAKILSQNIERM----GVKNA- 154

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS-------LCEA----A 165
              +  ++   + +      D ++ D      G  + D +           LC       
Sbjct: 155 --IVLNETPARLAKHFPLYFDRIVVDAPCSGEGMFRKDVVAQEEWSLENVKLCATRQNEI 212

Query: 166 TFFALEMLNIGGDFL 180
              A +ML  GG  +
Sbjct: 213 LEEAAKMLKPGGRLV 227


>gi|168052697|ref|XP_001778776.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669782|gb|EDQ56362.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 309

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 31/156 (19%)

Query: 44  LEGWR---ARSAYKLLQINEKHQILQS------NRRIVDLGSSPGSWSQVAARITGSNAN 94
             GWR   AR+ +     +E+ ++ Q+         I+D+    G ++    R    + +
Sbjct: 107 ERGWRQNFARAGF--PGPDEEFKMAQNYFKSVQGGVILDVSCGSGLFT----RRFAQSGD 160

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA--YPTIGHRK 152
            + V+A+D  +       +F + D                N  LV +D+A      G   
Sbjct: 161 FSSVIALDFSENMLRQSNEFIRQD----------PSLANSNIALVRADVARLPFATGSID 210

Query: 153 IDHLRTMSLCEA--ATFFAL--EMLNIGGDFLVKTF 184
             H      C    A   A    +L  GG F+  TF
Sbjct: 211 AVHAGAALHCWPSPAAGMAEIARILKPGGVFVATTF 246


>gi|68535941|ref|YP_250646.1| hypothetical protein jk0864 [Corynebacterium jeikeium K411]
 gi|68263540|emb|CAI37028.1| hypothetical protein jk0864 [Corynebacterium jeikeium K411]
          Length = 283

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 24/142 (16%)

Query: 47  WRARSAYKLLQINEKH---QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAID 102
           W +R A+KLL   E      +    + ++D G+S G ++ V      +      V     
Sbjct: 66  WASRGAHKLLGALEAFEPQGLSVEGKTVLDAGASTGGFTDVCLDRGAAKVKAVDVGYGQL 125

Query: 103 ILDMEPILGVKFFKFDFLDLD-SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           I  ++    V     D +D         + +GG  DL++ D++             ++ L
Sbjct: 126 IWRLQNDDRV-----DVMDRTNVRTLTPEDLGGQVDLMVGDLS-----------FISIRL 169

Query: 162 CEAATFFALEMLNIGGDFLVKT 183
              A    +     GGD L   
Sbjct: 170 VLPALSACV---KEGGDLLPMV 188


>gi|303241042|ref|ZP_07327552.1| putative RNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302591467|gb|EFL61205.1| putative RNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 251

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 37/186 (19%)

Query: 54  KLLQINEKHQI------------LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           K++Q ++  +             ++    ++DLG+  G  S + A  T + +     +  
Sbjct: 20  KIIQKDKAFRFGLDAVLLANFADVKKGNSVIDLGTGTGIISILLAGKTEAKSIVGLEIQE 79

Query: 102 DILDMEP--------ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
           DI +M             VK    D       E + +    + D+V+S+  Y   G   I
Sbjct: 80  DIAEMADRSVKMNCLEDRVKIVCGDI-----KESVGRFGASSFDVVVSNPPYMNQGGGLI 134

Query: 154 D------HLRTMSLC--EAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH---FQK 202
           +        R   LC  E     A ++L  GG F     +     DI+  ++K+    + 
Sbjct: 135 NIRDTKAIARHEILCSLEDVVKSASKLLVSGGQF-AMVHRPDRLADIIWFMRKYTIEPKY 193

Query: 203 VIHVKP 208
           +  V P
Sbjct: 194 IRFVHP 199


>gi|192292446|ref|YP_001993051.1| arsenite S-adenosylmethyltransferase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286195|gb|ACF02576.1| Methyltransferase type 11 [Rhodopseudomonas palustris TIE-1]
          Length = 283

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 42/160 (26%)

Query: 39  VQRAQLEGWRARSAYK---------LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
              AQ +G  A +            L Q       L     ++DLGS  G    ++AR  
Sbjct: 47  YDAAQEQGLPAEAMLASLGCGNPTALAQ-------LSPGETVLDLGSGGGIDVLLSARRV 99

Query: 90  GSNANNTRV--------VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           G       +        +A D      +  V+F K +       E I      + D+++S
Sbjct: 100 GPTGKAYGLDMTDEMLALARDNQRKAGLDNVEFLKGEI------EAIP-LPDHSVDVIIS 152

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           +      G +                 A  +L  GG F V
Sbjct: 153 NCVINLSGDKD-----------RVLREAFRVLKPGGRFAV 181


>gi|115396806|ref|XP_001214042.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193611|gb|EAU35311.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 306

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 26/143 (18%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +S + ++D+G+  G W    A        + +V+  D+  ++P       +F+  D    
Sbjct: 70  KSIQNVLDVGTGTGIW----AIDFADEYPSAQVIGTDLSPIQPSFVPPNLRFEIDDAT-- 123

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF----LV 181
                 +  + +  L  +              +          AL  L  GG F    + 
Sbjct: 124 ---EPWVYPDNEFDLVHVRALYGAIADWPAFYSN---------ALRTLRPGGWFDQLEMS 171

Query: 182 KTFQGGT----TNDILCLLKKHF 200
             F         + +L    K F
Sbjct: 172 IQFTSDDGTVTEDHVLAQWSKIF 194


>gi|39936624|ref|NP_948900.1| arsenite S-adenosylmethyltransferase [Rhodopseudomonas palustris
           CGA009]
 gi|39650480|emb|CAE29003.1| UbiE/COQ5 methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 283

 Score = 38.3 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 42/160 (26%)

Query: 39  VQRAQLEGWRARSAYK---------LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
              AQ +G  A +            L Q       L     ++DLGS  G    ++AR  
Sbjct: 47  YDAAQEQGLPAEAMLASLGCGNPTALAQ-------LSPGETVLDLGSGGGIDVLLSARRV 99

Query: 90  GSNANNTRV--------VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           G       +        +A D      +  V+F K +       E I      + D+++S
Sbjct: 100 GPTGKAYGLDMTDEMLALARDNQRKAGLDNVEFLKGEI------EAIP-LPDHSVDVIIS 152

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           +      G +                 A  +L  GG F V
Sbjct: 153 NCVINLSGDKD-----------RVLREAFRVLKPGGRFAV 181


>gi|301766218|ref|XP_002918529.1| PREDICTED: probable methyltransferase C20orf7, mitochondrial-like
           [Ailuropoda melanoleuca]
 gi|281347932|gb|EFB23516.1| hypothetical protein PANDA_006993 [Ailuropoda melanoleuca]
          Length = 345

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 38/202 (18%)

Query: 2   VKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRH---INDPYVQRAQLEGWRARSAYKLLQI 58
           V  PGS+S R L   + +R  +   ++W  R    +   Y++     G  +R A      
Sbjct: 33  VSTPGSTSPRALN--IFDRDLKRKQKNWAARQPEPMKFDYLRE--EVG--SRIA------ 80

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI---DILDMEPILGVKFF 115
           +  + I ++    +D+G   G  +Q   + T        +      +IL+ME I  V   
Sbjct: 81  DRVYDITRNFSLALDVGCGRGYIAQHLNKETVGKFFQVDIAENALKNILEME-IPTVSVI 139

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
                   + E          DLV+S ++   +                A      +L  
Sbjct: 140 --------ADEEFLPFRENTFDLVVSSLSLHWVND-----------LPRALEQIHYVLKP 180

Query: 176 GGDFLVKTFQGGTTNDILCLLK 197
            G F+   F G T  ++ C L+
Sbjct: 181 DGVFIGAMFGGDTLYELRCSLQ 202


>gi|254436051|ref|ZP_05049558.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
 gi|207089162|gb|EDZ66434.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
          Length = 200

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 11/122 (9%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDF 119
           +H  L    +I+D+G   G  +Q+AA  +G +    +VV +D  L M  +   K  +   
Sbjct: 36  RHAQLSPGEQILDVGCGTGVLTQLAAEKSGPSG---KVVGVDPSLPMISLARKKAAR--- 89

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
               +       +G    L   +  +  +    + H     L          +L  GG  
Sbjct: 90  ----AQSQAEFKLGVVERLPFGNETFDVVLSSLMLHHLPAELKRQGLEEIHRVLKPGGRL 145

Query: 180 LV 181
           L 
Sbjct: 146 LA 147


>gi|184201185|ref|YP_001855392.1| hypothetical protein KRH_15390 [Kocuria rhizophila DC2201]
 gi|183581415|dbj|BAG29886.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 255

 Score = 38.3 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 44  LEGWRARSAYKLLQINEKHQILQS-NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
            + + +R+A+KL+   E    +    RR +D G+S G ++ V  R          V    
Sbjct: 57  EDEYASRAAHKLVGALECFSDVDPAGRRCLDAGASTGGFTDVLLRRGAREVVAVDVGHDQ 116

Query: 103 ILD-MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
           ++  +     V   +     L+        IGG  +L + D+++             +SL
Sbjct: 117 LVPQLRADPRVHVHEG----LNVRYLDAAEIGGPAELTVCDLSF-------------ISL 159

Query: 162 CEAATFFALEMLNIGGDFLVKT 183
                  A      GGD L+  
Sbjct: 160 TLVVPTLAGAT-VPGGDLLLMV 180


>gi|320535780|ref|ZP_08035861.1| conserved domain protein [Treponema phagedenis F0421]
 gi|320147328|gb|EFW38863.1| conserved domain protein [Treponema phagedenis F0421]
          Length = 333

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 44/135 (32%), Gaps = 27/135 (20%)

Query: 48  RARSAYKLLQ------------INEK------HQILQSNRRIVDLGSSPGSWSQVAARIT 89
            +R+  KL +            I EK        +  +  R +D G+ PG WS V  ++ 
Sbjct: 161 PSRAYLKLWEAMTLLEFYRKKTIAEKGFEAEGWALPGAGSRCLDAGACPGGWSWVLTQMG 220

Query: 90  GSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD-MAYPTI 148
                  R    D L   P   V+F   D   +   +       G  D +  D + YP  
Sbjct: 221 AEVVAIDRSELADSLMQNPK--VQFIPHDAFTITPQKL------GRFDWICCDVICYPPR 272

Query: 149 GHRKIDHLRTMSLCE 163
               I       LCE
Sbjct: 273 LLDWIHTWLASGLCE 287


>gi|163854801|ref|YP_001629098.1| putative methyltransferase [Bordetella petrii DSM 12804]
 gi|163258529|emb|CAP40828.1| putative methyltransferase [Bordetella petrii]
          Length = 256

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 25/127 (19%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           L ++  +H       R++DLG   G  S   A          RVVA D+           
Sbjct: 37  LAELAREH----PGTRVLDLGCGGGHVSFHVA------PCAARVVAYDLSQSM------- 79

Query: 115 FKFDFLDLDS----WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
              D +   +     + +    G    L  +D  +  +  R   H         A   A 
Sbjct: 80  --LDVVAEQAARRGLDNLSTRQGKAERLPFADGEFDLVLCRYSTHHWQD--AGQALREAR 135

Query: 171 EMLNIGG 177
            +L  GG
Sbjct: 136 RVLKPGG 142


>gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp.
           ART55/1]
          Length = 445

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           +Q+   +VD+ ++PG  +  AA + G      RV++ D+ + +       V       + 
Sbjct: 253 IQNGDLVVDVCAAPGGKTMYAASLAGQTG---RVISRDLTENKTELIEENVDRLGLTNVT 309

Query: 122 LDSWEF--IRQAIGGNPDLVLSD--------MAYPTIGHRKIDHLRTMSLCEAA---TFF 168
           +++W+   + + + G  D+V++D        M         +       L +        
Sbjct: 310 VEAWDARDLDENLVGKADVVIADLPCSGLGIMGRKNDIKYNVTGDSIDELAQLQKDILDT 369

Query: 169 ALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH-FQKVIH 205
               +  GG  +            N++   ++ H F+ V  
Sbjct: 370 VSRYVKTGGTLVYSTCTIDSRENQNNVKWFVENHDFETVSI 410


>gi|86606746|ref|YP_475509.1| hypothetical protein CYA_2107 [Synechococcus sp. JA-3-3Ab]
 gi|86555288|gb|ABD00246.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 232

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 29/125 (23%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFF 115
           L +   ++DLG+ PG       R         +++ +D++          ++ I G++  
Sbjct: 49  LPAAPCLLDLGTGPG----YVLRQWAQRYPGGQLIGVDLMPYMLERAKADLKDIPGIQLL 104

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + D  D                +V+ +M  P    + +                  +L  
Sbjct: 105 QADLHDPHLPLPDSSVDAAQAVVVIHEMVQPVRLLQAV----------------RRLLKP 148

Query: 176 GGDFL 180
           GG FL
Sbjct: 149 GGRFL 153


>gi|51246266|ref|YP_066150.1| hemolysin A [Desulfotalea psychrophila LSv54]
 gi|50877303|emb|CAG37143.1| related to hemolysin A [Desulfotalea psychrophila LSv54]
          Length = 242

 Score = 38.3 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           V+  +   + +R  +KL Q      I  + +   D+G+S G ++    +      +  +V
Sbjct: 51  VRLRKKCPYVSRGGFKLEQALNYFSIDLAGKVCADIGASSGGFTDCLLQ-----HDVGKV 105

Query: 99  VAIDI 103
            A+D+
Sbjct: 106 FAVDV 110


>gi|297686139|ref|XP_002820622.1| PREDICTED: putative methyltransferase NSUN6-like [Pongo abelii]
          Length = 469

 Score = 38.3 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 28/140 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPIL---------GVKF 114
           Q   +I+DL ++PG  +   A +         V+A+D     +E I           ++ 
Sbjct: 233 QPGEKILDLCAAPGGKTTHIAALMHDQGE---VIALDKIFNKVEKIKQNALLLGLNSIRA 289

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLS-------------DMAYPTIGHRKIDHLRTMS- 160
           F FD       + +    G  P +V+S                        +  + +   
Sbjct: 290 FCFDGTKAVKLDMVEDTEGEPPFIVVSYIRHMIEGECAGMGQRPNMACTWSLKEVASYQP 349

Query: 161 LCEAATFFALEMLNIGGDFL 180
           L       A+++L   G  +
Sbjct: 350 LQRKLFTAAVQLLKPEGVLV 369


>gi|183984481|ref|YP_001852772.1| hypothetical protein MMAR_4511 [Mycobacterium marinum M]
 gi|183177807|gb|ACC42917.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 221

 Score = 38.3 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
            +WL     D   +R+     RAR    L+++        +  R++DLG +P SW     
Sbjct: 2   SNWLRDTATDINSRRSLSGRARARRWRHLIEVFPSF----AEMRVLDLGGTPESWRLAPV 57

Query: 87  RITGSNANNTRVVAIDILDMEP-ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           R          V  +++L +E  I G+   + D     + E        + DLV S+   
Sbjct: 58  RPRA-------VTTVNLLPIESQITGITAIQGD-----ACELPSAIANDHFDLVFSNSLL 105

Query: 146 PTIGHR 151
             +G  
Sbjct: 106 EHVGGH 111


>gi|90407668|ref|ZP_01215848.1| predicted SAM-dependent methyltransferase [Psychromonas sp. CNPT3]
 gi|90311259|gb|EAS39364.1| predicted SAM-dependent methyltransferase [Psychromonas sp. CNPT3]
          Length = 366

 Score = 38.3 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
             +RS  KL +         E+ +   S  R VDLG+ PG W+    R 
Sbjct: 183 APSRSTLKLEEAVHTFLTAEEREERFTSGMRAVDLGACPGGWTYQLVRQ 231


>gi|163939674|ref|YP_001644558.1| cysteine synthase A [Bacillus weihenstephanensis KBAB4]
 gi|229132705|ref|ZP_04261551.1| cysteine synthase [Bacillus cereus BDRD-ST196]
 gi|229166743|ref|ZP_04294493.1| cysteine synthase [Bacillus cereus AH621]
 gi|163861871|gb|ABY42930.1| cysteine synthase A [Bacillus weihenstephanensis KBAB4]
 gi|228616740|gb|EEK73815.1| cysteine synthase [Bacillus cereus AH621]
 gi|228650715|gb|EEL06704.1| cysteine synthase [Bacillus cereus BDRD-ST196]
          Length = 305

 Score = 38.3 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 9/44 (20%)

Query: 36 DPYVQRAQLEGW---RA---RSAYKLLQINEKHQILQSNRRIVD 73
          D YV+    E +   R+   R+AY L+ I E+H +++    I++
Sbjct: 29 DVYVKL---EMFNPSRSVKDRAAYNLIHIAEEHGLIKPGDTIIE 69


>gi|296167245|ref|ZP_06849650.1| methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897421|gb|EFG77022.1| methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 248

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 25/138 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +      +D+GS PG+ +   AR  G                           D  +   
Sbjct: 89  IPPGGVALDVGSGPGNVTASLARAAGPEGLA-------------------LGIDISEPML 129

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE------AATFFALEMLNIGGD 178
              +R   G     + +D     +    +D + + ++ +      AA      +L  GG 
Sbjct: 130 ERAVRNEAGPQVGFIKADAQRLPLRDDTVDAVISTAVLQLVPDPAAALGEMARVLRPGGR 189

Query: 179 FLVKTFQGGTTNDILCLL 196
             V     G    +   L
Sbjct: 190 LAVMVPTVGPAARLFQKL 207


>gi|295396795|ref|ZP_06806930.1| ribosomal RNA large subunit methyltransferase J [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970379|gb|EFG46319.1| ribosomal RNA large subunit methyltransferase J [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 250

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 32/156 (20%)

Query: 36  DPYVQRAQLEGWRARSAYKL------LQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           D +V   Q + W ARSA+KL      L I+    +       +D G+S G ++QV     
Sbjct: 46  DDHVALTQADPWVARSAHKLLGALSDLGIDRVDGL-----TCLDAGASTGGFTQVLL-TK 99

Query: 90  GSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
           G+       V  D L   +     V   +   L   + E+ R    G  DLV++D+++  
Sbjct: 100 GAEHVYAVDVGHDQLHTSLRTDPRVTNLEGHNLRELTPEWTR----GLVDLVVADVSF-- 153

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
                      +SL        +++   GG  L+  
Sbjct: 154 -----------ISLTLF-IDRLVKVTRPGGHLLLMV 177


>gi|255726472|ref|XP_002548162.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240134086|gb|EER33641.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 339

 Score = 38.3 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 31/143 (21%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-------------EP 108
             I +   +++D     G    +   +         ++ +DI  +             +P
Sbjct: 122 DTIFKPGMKLLDFACGTG----MVTELFAPYVKGGELIGMDISSVWLERFNERSKQFSDP 177

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
           I+  K F +D LD    E ++Q  G    ++       TI +  I +   ++        
Sbjct: 178 IM--KSFVYDVLDESKQEELKQFEGEFDGIIC------TIAYHHIFNYEQVT-----KKL 224

Query: 169 ALEMLNIGGDFLVKTFQGGTTND 191
           A   L   G   +  F       
Sbjct: 225 AT-FLKPKGWLFIVDFYNEDVEK 246


>gi|154252738|ref|YP_001413562.1| hypothetical protein Plav_2291 [Parvibaculum lavamentivorans DS-1]
 gi|154156688|gb|ABS63905.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1]
          Length = 263

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   RI+D+G  PG  +Q  AR+ G   +  RV  +D+                  L + 
Sbjct: 38  KPGERILDVGVGPGLLAQDIARLVG---DAGRVAGLDMAPA-------MITMARTRLAAL 87

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                  G    L  +D A+      ++           A      +L  GG
Sbjct: 88  PQAECVTGDAAALEFADGAFDAAVSTQVYEYVAD--MPKALGELRRVLRPGG 137


>gi|323702581|ref|ZP_08114243.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532400|gb|EGB22277.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 448

 Score = 38.3 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 22/165 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-----KFDFL 120
           ++  +++DL ++PG     A  I G   +   +VA +I         +       +   +
Sbjct: 102 EAGDKVLDLCAAPGG---KATHIAGCLGHTGLLVANEINAKRARALSENLERWGARHILV 158

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRTMSLCEA-ATFFA 169
             +  E +     G  D ++ D                       +   ++ +      A
Sbjct: 159 TNEQPEKLAGRFAGFFDKIVVDAPCSGEGMFRKLPEACTDWSEAKVAQCAVIQKDILPLA 218

Query: 170 LEMLNIGGDFL---VKTFQGGTTNDILCLLKKHFQKVIHVKPVAS 211
             ML  GG  +       +      I   L  H +  +   P AS
Sbjct: 219 GRMLKPGGLMVYSTCTFSRAENEEQIENFLGNHPEFTLEPVPKAS 263


>gi|225859167|ref|YP_002740677.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 70585]
 gi|225719995|gb|ACO15849.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 70585]
          Length = 434

 Score = 38.3 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  + +     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLHYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|218887435|ref|YP_002436756.1| hypothetical protein DvMF_2347 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758389|gb|ACL09288.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 310

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 50  RSAYKLLQINEKHQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           R+  KL ++     ++          +DLGS PG W+ V A +        RV ++D  D
Sbjct: 158 RAYLKLWEL---FTLIGRRPGPGELCLDLGSCPGGWTWVLAEL------GARVFSVDKAD 208

Query: 106 MEP----ILGVKFFKF 117
           + P       V F   
Sbjct: 209 IAPHIAAHPNVNFCTG 224


>gi|266623221|ref|ZP_06116156.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479]
 gi|288865004|gb|EFC97302.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479]
          Length = 474

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 27/135 (20%)

Query: 66  QSNRRIVDLGSSPGS-WSQVAARITGSN--------ANNTRVVAIDILDMEPILGVKFFK 116
           +    ++DL ++PG   +Q+A R+ G              ++++ ++  M         +
Sbjct: 101 KPGDCVLDLCAAPGGKTTQIAGRLMGEGFLLSNEIHPARAKILSQNVERM-------GIR 153

Query: 117 FDFLDLDSWEFIRQAI-----GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------ 165
              +  ++ E + +       G   D   S                   +   A      
Sbjct: 154 NAVVANETPERLAERFPEFFDGMVVDAPCSGEGMFRKDEEACRQWSPDHVVMCAARQRQI 213

Query: 166 TFFALEMLNIGGDFL 180
              A  ML  GG  +
Sbjct: 214 LDSAARMLKAGGRMV 228


>gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
           periodonticum ATCC 33693]
          Length = 434

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 27/164 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---------LDMEPILGVKFFK 116
           + N  ++D+ ++PG  + V A    +      V+AIDI          +M+ + G+   K
Sbjct: 239 KPNELVLDICAAPGGKTAVLAEEMQNKGE---VIAIDIHQHKKKLIEENMKKL-GINIVK 294

Query: 117 FDFLDL-DSWEFIRQAIGGNPDLVLSDMAYPTI------GHRKIDHLRTMSLCEAATFFA 169
              LD  +  +  R+      D+  S                + +     SL       A
Sbjct: 295 ATILDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLEILNSA 354

Query: 170 LEMLNIGGDFL---VKTFQGGTTNDILCLLKKHFQKVIHVKPVA 210
            ++L  GG+ +           T++I   LK+        K  A
Sbjct: 355 ADILKDGGELIYSTCTIISQENTDNIEQFLKER----KEFKVKA 394


>gi|229085534|ref|ZP_04217770.1| Methyltransferase type 11 [Bacillus cereus Rock3-44]
 gi|228697755|gb|EEL50504.1| Methyltransferase type 11 [Bacillus cereus Rock3-44]
          Length = 260

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 28/145 (19%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--------PILGVKFFKFDFLD 121
           +I+D+G+  GS     A+    +            +           I GV F + DFL 
Sbjct: 93  KILDIGTGSGSLIIKLAKTFPKSYLTGIDYWGGNWEYSKAQCQQNAEIEGV-FNRIDFLK 151

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL- 180
             + E          D+++S + +  +   +                AL +L  GG F+ 
Sbjct: 152 ASATEL--PFTDDEFDIIVSCLTFHEVKDSENKIEVIKE--------ALRVLKPGGKFIF 201

Query: 181 ------VKTFQGGTTNDILCLLKKH 199
                  K F  G   ++L +LKKH
Sbjct: 202 LDLFMDEKIF--GDEKELLNVLKKH 224


>gi|121712445|ref|XP_001273834.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119401986|gb|EAW12408.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 325

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
            R++D+G+  G+W+   A +        +V+  D+  ++P        F+  D    E++
Sbjct: 93  ERVLDVGTGTGAWAMEFADLHP----TAKVIGTDLSPIQPNFVPPNLTFEI-DDCCDEWM 147

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            +      D +     Y ++      + +           AL+ L  GG  
Sbjct: 148 YR---DPFDFIHVRGLYGSVADWDKFYEQ-----------ALKHLKPGGYL 184


>gi|322376224|ref|ZP_08050717.1| NOL1/NOP2/sun family protein [Streptococcus sp. M334]
 gi|321282031|gb|EFX59038.1| NOL1/NOP2/sun family protein [Streptococcus sp. M334]
          Length = 434

 Score = 38.3 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD-FLDLD 123
               +++DL ++PG  S Q+AA + G     +  ++     +      +F   +  +  +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGTTNVVVTNE 149

Query: 124 SWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFALEM 172
           S + + +   G  DL++ D               + +  +D+     SL       A+ M
Sbjct: 150 SADRLAKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDAVTM 209

Query: 173 LNIGGDFL 180
           L  GG  +
Sbjct: 210 LAEGGRLV 217


>gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 471

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-----VAIDILD 105
            AYKL Q+      L+ +  + DL +  G+ +Q  A+          V      A D   
Sbjct: 304 QAYKLYQVARNFADLKGDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAF 363

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
              I  V F+  D  ++ +  FI +   G PD++++D   P  G  K    + + + 
Sbjct: 364 ANGIENVTFYVGDMKNIFNDTFIEE--NGTPDVIITD--PPRDGMHKDVVAKILQIA 416


>gi|326791170|ref|YP_004308991.1| Fmu (Sun) domain protein [Clostridium lentocellum DSM 5427]
 gi|326541934|gb|ADZ83793.1| Fmu (Sun) domain protein [Clostridium lentocellum DSM 5427]
          Length = 453

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 13/127 (10%)

Query: 67  SNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLD 123
              R++DL ++PG  S Q+AAR+ G     +  ++       ++ +      +       
Sbjct: 102 PGDRVLDLCAAPGGKSTQIAARMEGKGVLVSNDISASRAKALLKNLENFGARQAIVTSET 161

Query: 124 SWEFIRQAIGGNPDLVLSDMAY-------PTIGHRKIDHL---RTMSLCEAATFFALEML 173
           S +   +  G    +++                 +  ++      M L E     A  ML
Sbjct: 162 SEKLASKWPGYFDKILIDAPCSGEGMFRKNETAVKSWENYGVDYCMRLQETILEDAATML 221

Query: 174 NIGGDFL 180
              G  L
Sbjct: 222 KPDGMLL 228


>gi|256820983|ref|YP_003142262.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
           7271]
 gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
           7271]
          Length = 471

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-----VAIDILD 105
            AYKL Q+      L+ +  + DL +  G+ +Q  A+          V      A D   
Sbjct: 304 QAYKLYQVARNFADLKGDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAF 363

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
              I  V F+  D  ++ +  FI +   G PD++++D   P  G  K    + + + 
Sbjct: 364 ANGIENVTFYVGDMKNIFNDTFIEE--NGTPDVIITD--PPRDGMHKDVVAKILQIA 416


>gi|168491306|ref|ZP_02715449.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC0288-04]
 gi|183574356|gb|EDT94884.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC0288-04]
          Length = 434

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKIFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|126668278|ref|ZP_01739238.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter sp.
           ELB17]
 gi|126627304|gb|EAZ97941.1| cyclopropane-fatty-acyl-phospholipid synthase [Marinobacter sp.
           ELB17]
          Length = 424

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 13/139 (9%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
           SAYKL  I  K + L+   +++++G+  G ++  AA+  G +   T + A  +   +  +
Sbjct: 182 SAYKLDVICRKLE-LKPGDQVLEIGTGWGGFAIHAAKHYGCHVTTTTISAEQLALAKQRV 240

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
             +  +     L  ++  R   G    LV  +M           +   +S          
Sbjct: 241 EAEGLQDRITLL--FDDYRDLSGQYDKLVSIEMIEAVGPQFLPSYFGQIS---------- 288

Query: 171 EMLNIGGDFLVKTFQGGTT 189
           ++L   G  L++       
Sbjct: 289 QLLKPEGLALIQAINMPEQ 307


>gi|89214427|gb|ABD64515.1| polyprotein [Ngoye virus]
          Length = 1392

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 40   QRAQLEGW------RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
            + A  +G        +R A KL  + E+   L+    + DLG   G WSQ  A +     
Sbjct: 899  REAIRKGLTDHGHPVSRGAAKLHWLVER-GFLEPKGWVTDLGCGRGGWSQYTATLPQVTR 957

Query: 94   NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
                 +     + +PI    +        D  + + +      D V+ D+   +    ++
Sbjct: 958  VVGYTLGTGGHE-KPIPTESYGHNIITYHDKVD-VMRLPPHLCDTVMCDIGESSSNV-EV 1014

Query: 154  DHLRTMSLCEAATFFALEML--NIGGDFLVKT 183
            +  RT+++ E    FA   L  N G  F  K 
Sbjct: 1015 EAGRTVAVIEM---FA-NWLEANPGAQFCCKV 1042


>gi|110633093|ref|YP_673301.1| hemolysin A [Mesorhizobium sp. BNC1]
 gi|110284077|gb|ABG62136.1| hemolysin A [Chelativorans sp. BNC1]
          Length = 252

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 22/140 (15%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-D 105
           + +R+A KL+   +   +       +D+GSS G ++QV      ++     V    +   
Sbjct: 66  YVSRAALKLVHGLDAFGLDPHGALALDIGSSTGGFTQVLLERGAAHVTAIDVGTGQMDAR 125

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
           +     V   +     +++       IGG  P+ ++SD++             ++ L   
Sbjct: 126 LREDPRVACLEG----INARYLTLGMIGGRRPNFLVSDVS-----------FISLKL--- 167

Query: 165 ATFFALEMLNIG--GDFLVK 182
           A   ALEM   G  G FLVK
Sbjct: 168 ALPPALEMAEKGAWGLFLVK 187


>gi|298483603|ref|ZP_07001778.1| methyltransferase [Bacteroides sp. D22]
 gi|298270173|gb|EFI11759.1| methyltransferase [Bacteroides sp. D22]
          Length = 253

 Score = 38.0 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 41/133 (30%), Gaps = 19/133 (14%)

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWS----QVAARITGSNANNTRVVAIDILDMEPILG 111
           LQ  +K  +   + RI++L    G  +    Q    I G +  ++ +       ++  L 
Sbjct: 27  LQFYKKWLLTNKDARILELCCGTGRLTIPIAQEGYNICGVDYTSSMLERAQAKAIKTGLE 86

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
           + F + D   LD  E                     I    I HL        A      
Sbjct: 87  INFIEADIRTLDLQEQFDFIF---------------IPFNSIHHLYRNEDLFKALESVKR 131

Query: 172 MLNIGGDFLVKTF 184
            L  GG FL   F
Sbjct: 132 HLKDGGLFLFDCF 144


>gi|320182422|gb|EFW57319.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Shigella boydii
           ATCC 9905]
          Length = 366

 Score = 38.0 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R     + +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLQEDGF 262


>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
 gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
          Length = 511

 Score = 38.0 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPI-LGVKFFKFDFLDL 122
           +    +VD+ ++PG  S   A   G   +  RVVA D     +E +    +      ++ 
Sbjct: 313 RPGDLVVDVAAAPGGKSTHIAERMG---DRGRVVACDADPGRLEKVGEAARRLGLGCIEP 369

Query: 123 DSWE--FIRQAIGGNPDLVLSD-------MAYPTIGHRKI----DHLRTMSLCEAATFFA 169
            + +   + + + G  D VL+D       +       R      D      L       A
Sbjct: 370 LALDGRKLPERLAGQADRVLADVPCSGLGVLARRPDLRWRKTPDDLAALAELQGELLRAA 429

Query: 170 LEMLNIGGDFL 180
              L  GG  +
Sbjct: 430 AACLKPGGVLV 440


>gi|302894435|ref|XP_003046098.1| hypothetical protein NECHADRAFT_91149 [Nectria haematococca mpVI
           77-13-4]
 gi|256727025|gb|EEU40385.1| hypothetical protein NECHADRAFT_91149 [Nectria haematococca mpVI
           77-13-4]
          Length = 321

 Score = 38.0 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 32/146 (21%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           ++IVDLG+  G W+Q        N  + RV+  D+  ++P      V+F   D  D +  
Sbjct: 86  QKIVDLGTGVGLWAQ----DMAENFPSARVIGTDLSPIQPHWTPPNVEFRVEDLEDEN-- 139

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD-----FL 180
              R       D  L  +       RK   L            + E L  GG       +
Sbjct: 140 ---RPWTRIYADADLIHIRALLQTLRKPRQLIQ---------RSFEELRPGGWIEIHEVI 187

Query: 181 VKTFQGGTT------NDILCLLKKHF 200
            + F    T      N    L++ HF
Sbjct: 188 SRVFSEDGTADDHPMNRFYDLVEGHF 213


>gi|309792651|ref|ZP_07687105.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
 gi|308225317|gb|EFO79091.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
          Length = 247

 Score = 38.0 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 24/131 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           LQ    ++DLGS  G    +AAR  G++     V  +D+              D +   +
Sbjct: 46  LQPGEVVLDLGSGGGLEVLLAARQVGASGY---VYGLDM-------------TDAMLETA 89

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TFFALEMLNIGGD 178
                +    N   +  D+    +  + ++ + +  +   A         A  +L  GG 
Sbjct: 90  RRNAEKVGATNVSFLKGDIEAIPLPDQSVNVIISNCVINLAPDKGQVLNDAFRVLRPGGR 149

Query: 179 FLVK--TFQGG 187
             V    F G 
Sbjct: 150 LAVSDIVFDGE 160


>gi|302886844|ref|XP_003042311.1| hypothetical protein NECHADRAFT_51668 [Nectria haematococca mpVI
           77-13-4]
 gi|256723221|gb|EEU36598.1| hypothetical protein NECHADRAFT_51668 [Nectria haematococca mpVI
           77-13-4]
          Length = 344

 Score = 38.0 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 24/117 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           L+  ++IVD+G+  GSW    A   G       V+ ID+  ++P      V+F       
Sbjct: 105 LEDPQKIVDIGTGTGSW----AIDMGDEYPGAEVIGIDLSPIQPPWVPPNVRFL------ 154

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
               +     + G   L L  M   +   +  D L            A   L  GG 
Sbjct: 155 --VDDAEAPWLFGQDSLDLVHMRNMSTAIKDWDKL---------LGQAYSNLKPGGW 200


>gi|83945407|ref|ZP_00957755.1| hemolysin A [Oceanicaulis alexandrii HTCC2633]
 gi|83851241|gb|EAP89098.1| hemolysin A [Oceanicaulis alexandrii HTCC2633]
          Length = 245

 Score = 38.0 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R+A KL++  +   +  + +R +D+GSS G +++V            RVVA+D+
Sbjct: 56  YVSRAALKLVKGLDAFGVDPAGKRCLDIGSSTGGFTEVLLER-----GAARVVAVDV 107


>gi|282934635|ref|ZP_06339878.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 208-1]
 gi|281301210|gb|EFA93511.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 208-1]
          Length = 781

 Score = 38.0 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 17/157 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD---FLDL 122
           +  ++++DL ++PG  S        +                    ++    D     + 
Sbjct: 417 KPGQKVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAKNLRENIERGGADNCLVTNE 476

Query: 123 DS----WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TFFALEM 172
           D+     +F R       D   S        H  + +     + E +         A++M
Sbjct: 477 DTSHLAQKFPRFFDAILVDAPCSGEGMFRKNHDAVTYWSQEYVLECSNRQKEILNEAVKM 536

Query: 173 LNIGGDFL--VKTFQGGTTNDILCLLKKH--FQKVIH 205
           L  GG  L    T+      +I   L     F+ V  
Sbjct: 537 LKPGGSLLYSTCTYAPEEDEEICAYLVNELGFKLVET 573


>gi|145525795|ref|XP_001448714.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416269|emb|CAK81317.1| unnamed protein product [Paramecium tetraurelia]
          Length = 311

 Score = 38.0 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 32/130 (24%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPI 109
           +   L+    ++DLGS  G+   +A  + G +    +V+ +D+                 
Sbjct: 112 EFAQLKKGDIVLDLGSGAGNDCFIARALVGESG---KVIGVDMTPNMIRKAQLNSDKYNF 168

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             V+F   D  DL         +    D+ +S+     +  ++                 
Sbjct: 169 RNVEFRYGDISDLP-------ILDNFVDVAISNCVINLVPDKRKVFQEI----------- 210

Query: 170 LEMLNIGGDF 179
             +L   G F
Sbjct: 211 KRVLKSNGHF 220


>gi|30248665|ref|NP_840735.1| ribosomal protein L11 methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|38605217|sp|Q81ZZ9|PRMA_NITEU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|30180260|emb|CAD84565.1| prmA; putative ribosomal protein L11 methyltransferase
           [Nitrosomonas europaea ATCC 19718]
          Length = 313

 Score = 38.0 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 8/146 (5%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
            Q LQ    ++D G   G  +  A +         RV  +DI        +   + +F D
Sbjct: 159 DQFLQPGDSVLDYGCGSGILAIAALKF-----GADRVTGMDIDPNAITASLDNARNNFCD 213

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D   F         D   S    P      + ++    L   A     + L  GG  ++
Sbjct: 214 PDRLLFTTVLPPLVEDDRASAEWAPVTI--VVANILANPLIMLAPVLM-KALQPGGRIVL 270

Query: 182 KTFQGGTTNDILCLLKKHFQKVIHVK 207
                   +++L +  + F   I  K
Sbjct: 271 SGILETQADEVLQVYSEWFDMHIAAK 296


>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rettgeri DSM 1131]
 gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rettgeri DSM 1131]
          Length = 427

 Score = 38.0 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 20/131 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----------MEPILGVKFF 115
           Q+   I+DL ++PG  +     +    A    V+A+DI +          +         
Sbjct: 245 QNGESILDLCAAPGGKTTHILEL----APRANVIAVDIDEYRLKRVKENLIRLKQHAVVI 300

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMA----YPTIG--HRKIDHLRTMSLCEAATFFA 169
           + D    + W   +Q      D   S       +P I    R  D      L        
Sbjct: 301 QGDGTQPEKWAKDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQAQILEAI 360

Query: 170 LEMLNIGGDFL 180
              L  GG  L
Sbjct: 361 WPYLKPGGTLL 371


>gi|215769253|dbj|BAH01482.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632457|gb|EEE64589.1| hypothetical protein OsJ_19441 [Oryza sativa Japonica Group]
          Length = 495

 Score = 38.0 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 33/181 (18%)

Query: 23  QGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQ--ILQ-----SNRRIVDLG 75
           + + R +   H  D  V+        +R+A     ++++ +  +L        + +++LG
Sbjct: 14  RKAQRSYWEEHSKDLTVE---AMMLDSRAA----DLDKEERPEVLSVLPSYKGKSVLELG 66

Query: 76  SSPGSWSQVAARITG---SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
           +  G ++   A+  G   +      V+  +         + F   D    D         
Sbjct: 67  AGIGRFTGELAKEAGHVLALDFIESVIKKNENINGHHKNITFMCADVTSPD--------- 117

Query: 133 GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD--FLVKTFQGGTTN 190
                L + D +   I    +    +    E      ++ L +GG   F    F     +
Sbjct: 118 -----LTIEDNSIDLIFSNWLLMYLSDEEVEKLVGRMVKWLKVGGHIFFRESCFHQSGDS 172

Query: 191 D 191
            
Sbjct: 173 K 173


>gi|85084986|ref|XP_957418.1| hypothetical protein NCU07193 [Neurospora crassa OR74A]
 gi|28918509|gb|EAA28182.1| predicted protein [Neurospora crassa OR74A]
 gi|28950222|emb|CAD71089.1| hypothetical protein [Neurospora crassa]
          Length = 436

 Score = 38.0 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 33/120 (27%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDL 122
           +S + I+D+G+  G W+  A           RV  +DI  ++P+     V F     +D 
Sbjct: 202 KSPQNILDIGTGTGIWAIDAGDRWP----MARVRGMDISPVQPVWVPPNVDFL----VDD 253

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF----ALEMLNIGGD 178
              E++ +                  G     H R M++           A+E L  GG 
Sbjct: 254 CEQEWLMR------------------GELDYAHFRFMAIVLKDLPVVLGHAMEALKPGGW 295


>gi|284050071|ref|ZP_06380281.1| Fmu, rRNA SAM-dependent methyltransferase [Arthrospira platensis
           str. Paraca]
 gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
           platensis NIES-39]
          Length = 447

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 18/130 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPIL------GVKFFKF 117
           Q    I+D  ++PG  +   A + G N    +V+AID     ++P+        ++  + 
Sbjct: 258 QPGEIIIDACAAPGGKTTHIAELMGDNG---KVIAIDRSPGRLKPLKQNINRLKLRSIQV 314

Query: 118 DFLDLDSWEFIRQAIGG---NPDLVLSDMAYPTIGHRKIDHLRTM----SLCEAATFFAL 170
           +  D   +            +         +     R       +     L         
Sbjct: 315 EVGDSRHFPQYNNMADRVLLDAPCSGGGTLHRRSDSRWRQTPDQIRQLSQLQAELLEMVS 374

Query: 171 EMLNIGGDFL 180
             +  GG  +
Sbjct: 375 HWVKPGGVLV 384


>gi|239579484|gb|ACR82301.1| polyprotein pp1ab [Gill-associated virus]
          Length = 943

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 112 VKFFKFDFLDLDSWEFIRQA--IGGNPDLVLSDMAYP---TIGHRKIDHLRTMSLCEAAT 166
             F +    ++ S + IR     G +  + L D   P         + +           
Sbjct: 784 CPFIQHIPGEVTSVDLIRHINPKGPSFAIDLHDELPPGKYDTIISDLYNATPEITFPRFL 843

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
                 L   G FL K       N I+  + ++F      K
Sbjct: 844 DIINRNLKEHGHFLFKVTNKFRHNKIIEEIAQYFSYTHIFK 884


>gi|219851763|ref|YP_002466195.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
 gi|219546022|gb|ACL16472.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
          Length = 274

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLD 123
           + +  R++DLG   G  ++  A ITG       +   D    +       F +  F    
Sbjct: 44  INNGDRVLDLGCGTGRLARHVAEITGKTGFVVGLDPSDHRIKLALEKSRLFPQLSFRVGS 103

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                  ++G  PD     +   +  H   DH       E+A      +L  GG
Sbjct: 104 DL-----SLGNFPDNSFDAVYLNSAFHHIKDHKGQ----ESALTQVRRILKPGG 148


>gi|15606155|ref|NP_213532.1| hemolysin [Aquifex aeolicus VF5]
 gi|2983347|gb|AAC06935.1| hemolysin [Aquifex aeolicus VF5]
          Length = 258

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 17/187 (9%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-D 105
           + +R   KL    ++  +   ++ ++D+GSS G ++  A +          V    +   
Sbjct: 56  YVSRGGEKLEWAIKRFSLDLKDKVVLDVGSSTGGFTDCALQHGAKKVYAVDVGRGQMDYK 115

Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY-------PTIGHRKIDHLRT 158
           +     V  ++    + D+ E   + +    DL+  D+++       P +     +    
Sbjct: 116 LRQDPRVVLYE----ETDARELSEEHVPEKVDLITCDVSFISSTKVLPNVFKFLKEDGLL 171

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH-FQK--VIHVKPVASRAES 215
           + L +         +   G    K  +      ++  LK++ F+   VI  KP  +   +
Sbjct: 172 LVLVKPQFELCPRKVKK-GVVREKEHKREALQKVVNFLKENGFRILGVIKSKPKGT-KGN 229

Query: 216 VEMFLLA 222
            E F+LA
Sbjct: 230 EEFFVLA 236


>gi|46114338|ref|XP_383187.1| hypothetical protein FG03011.1 [Gibberella zeae PH-1]
          Length = 363

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 26/132 (19%)

Query: 53  YKLLQINEKHQILQSNR---RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP- 108
           Y LL ++ K  +         ++D+G+  G W   A      + N  +V+  DI  ++P 
Sbjct: 108 YLLLALDGKLHLAPVGDDAKSVLDVGTGTGIW---AIDFADEHPNAEQVIGTDISPIQPS 164

Query: 109 --ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
                VKF   D     ++                 M Y          L          
Sbjct: 165 WVPPNVKFEIEDCTQPWTF--------SPNTFDFIHMRYLYGSIGDWGALFQE------- 209

Query: 167 FFALEMLNIGGD 178
             A  +   GG 
Sbjct: 210 --AYRVCKPGGW 219


>gi|225374853|ref|ZP_03752074.1| hypothetical protein ROSEINA2194_00476 [Roseburia inulinivorans DSM
           16841]
 gi|225213314|gb|EEG95668.1| hypothetical protein ROSEINA2194_00476 [Roseburia inulinivorans DSM
           16841]
          Length = 281

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 61  KHQILQSNRRIVDLGSSPGS-WSQVAARITGSN--------ANNTRVVAIDILDM---EP 108
           ++ + +   RI+DL ++PG   SQ+A  + G              ++++ +I  M     
Sbjct: 85  EYLMAEPGERILDLCAAPGGKSSQIACSMQGEGLIVCNEIHPARAKILSENIERMGVCNA 144

Query: 109 ILGVKFFK--FDFLDLDSWEFIRQAIGGNPDLVL--SDMAYPTIGHRKID-HLRTMSLCE 163
           ++  +  +   D         +  A      +     D           +   R   +  
Sbjct: 145 LVTNETPQKLSDNFREYFDRILVDAPCSGEGMFRKNEDACDEWSPENVENCAARQAEI-- 202

Query: 164 AATFFALEMLNIGGDFL 180
                A EML  GG  +
Sbjct: 203 --LDCAAEMLKPGGRLV 217


>gi|332702418|ref|ZP_08422506.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552567|gb|EGJ49611.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 307

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 50  RSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--- 105
           R+  KL ++  +  I        +DLG+SPG WS V A          RV A+D  D   
Sbjct: 157 RAYLKLWELFTRLGIKPAPGDLCLDLGASPGGWSWVLA------GLGARVFAVDKADLAA 210

Query: 106 -MEPILGVKFFKF 117
            +  +  V+  + 
Sbjct: 211 NVAAMPNVEHCRG 223


>gi|195970192|ref|NP_384985.2| hypothetical protein SMc00973 [Sinorhizobium meliloti 1021]
 gi|307304209|ref|ZP_07583961.1| hemolysin A [Sinorhizobium meliloti BL225C]
 gi|307320514|ref|ZP_07599929.1| hemolysin A [Sinorhizobium meliloti AK83]
 gi|187904153|emb|CAC45451.2| Probable hemolysin [Sinorhizobium meliloti 1021]
 gi|306893790|gb|EFN24561.1| hemolysin A [Sinorhizobium meliloti AK83]
 gi|306902677|gb|EFN33270.1| hemolysin A [Sinorhizobium meliloti BL225C]
          Length = 251

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL+   +   +  S +  +D+G+S G +++V  +   ++     V    I 
Sbjct: 63  QDYVSRAALKLVAALDHFGLDPSEQTCLDVGASTGGFTEVLLKRGAAHVVAVDVGHGQIH 122

Query: 105 D-MEPILGVKFFKF 117
             +     V   + 
Sbjct: 123 PRVAEDPRVTNIEG 136


>gi|21655312|gb|AAM64226.1| non-structural polyprotein [Semliki forest virus]
          Length = 2431

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK-T 183
            +G   D    D+         +I H +     + A         AL +L  GG  +    
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGILMRAYG 1264

Query: 184  FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +    +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 YADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1305


>gi|25121502|ref|NP_740666.1| nonstructural protein nsP2 [Semliki forest virus]
          Length = 798

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 132 IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK-T 183
           +G   D    D+         +I H +     + A         AL +L  GG  +    
Sbjct: 670 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGILMRAYG 727

Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
           +    +  ++  L + F     ++P      + E+FLL   F
Sbjct: 728 YADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 768


>gi|29650476|ref|NP_819009.1| Nonstructural protein P123 [Semliki forest virus]
          Length = 1817

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK-T 183
            +G   D    D+         +I H +     + A         AL +L  GG  +    
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGILMRAYG 1264

Query: 184  FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +    +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 YADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1305


>gi|16767846|ref|NP_463457.1| Nonstructural polyprotein [Semliki forest virus]
 gi|58615|emb|CAA27741.1| polyprotein of non-structural proteins [Semliki forest virus]
          Length = 2431

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 132  IGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK-T 183
            +G   D    D+         +I H +     + A         AL +L  GG  +    
Sbjct: 1207 LGLPADAGRFDLVFVNIHTEFRIHHYQQ--CVDHAMKLQMLGGDALRLLKPGGILMRAYG 1264

Query: 184  FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +    +  ++  L + F     ++P      + E+FLL   F
Sbjct: 1265 YADKISEAVVSSLSRKFSSARVLRPDCV-TSNTEVFLLFSNF 1305


>gi|301066545|ref|YP_003788568.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
 gi|300438952|gb|ADK18718.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
           Zhang]
          Length = 443

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 23/148 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  S   A   G          N   ++V++ ++       G +   
Sbjct: 92  KPGERVLDLCAAPGGKSTQLACYLGDTGLLVSNEINGPRSKVLSGNLERW----GTRQIL 147

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMA-------YPTIGHRKIDHLRT-MSLCEAATFF 168
               D D+       +     +                  +   D+        +     
Sbjct: 148 VTNNDPDTLAKAWPQMFDRILVDAPCSGEGMFRKDPDATQYWHADYPAQCAERQKQILKA 207

Query: 169 ALEMLNIGGDFL--VKTFQGGTTNDILC 194
           A++ML  GG  +    TF       I+ 
Sbjct: 208 AVKMLAPGGTLIYSTCTFSPEEDEQIIA 235


>gi|302888198|ref|XP_003042986.1| hypothetical protein NECHADRAFT_103915 [Nectria haematococca mpVI
           77-13-4]
 gi|256723900|gb|EEU37273.1| hypothetical protein NECHADRAFT_103915 [Nectria haematococca mpVI
           77-13-4]
          Length = 315

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
              +R++D+G+  G W    A   G      +V+ +D+  ++P      V+FF  D  + 
Sbjct: 77  SKVKRVLDVGTGTGIW----AVDFGDEHPEAKVIGVDLSPIQPSFVPPNVEFFVDDIEEP 132


>gi|258574877|ref|XP_002541620.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901886|gb|EEP76287.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 315

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 24/119 (20%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFL 120
           I  + +R++DLG+  G W+   A    S A    VVA D+  ++P      ++F   DF 
Sbjct: 87  ITSNPQRVLDLGTGTGIWAMDFADEFPSAA----VVATDVSPIQPSLVPPNLEFQIDDFC 142

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              ++            L      YP +    +DH                 L  GG F
Sbjct: 143 QPWTFRQNSFDYIHARCLYGCCDDYPALYQEVLDH-----------------LKPGGWF 184


>gi|229128527|ref|ZP_04257505.1| hypothetical protein bcere0015_29730 [Bacillus cereus BDRD-Cer4]
 gi|228654720|gb|EEL10580.1| hypothetical protein bcere0015_29730 [Bacillus cereus BDRD-Cer4]
          Length = 415

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEATVSPYKP 291


>gi|212225090|ref|YP_002308326.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212010047|gb|ACJ17429.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 442

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 24/134 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-----DMEPI---LGV---KF 114
           +    +VDL ++PG  +   A +     N  ++ A DI       M+ +    GV   + 
Sbjct: 249 EPGETVVDLAAAPGGKTAHMAELMN---NTGKIYAFDIDSARIKRMKEVLRRAGVEIAET 305

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAAT 166
            K D     + E + + I     L     +  TI          R+ +  + + L +   
Sbjct: 306 IKADGR--KAPEILGEKIADRVLLDAPCTSDGTIVKNPELRWRLREKNIPKVVQLQKELI 363

Query: 167 FFALEMLNIGGDFL 180
             A ++L  GG  L
Sbjct: 364 ESAWKLLKPGGRLL 377


>gi|196037772|ref|ZP_03105082.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196031042|gb|EDX69639.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 415

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEATVSPYKP 291


>gi|292492924|ref|YP_003528363.1| RNA 2'-O-ribose methyltransferase [Nitrosococcus halophilus Nc4]
 gi|291581519|gb|ADE15976.1| putative RNA 2'-O-ribose methyltransferase [Nitrosococcus
           halophilus Nc4]
          Length = 371

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 44  LEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANN 95
                +R+  KL +         ++ + LQ   + VDLG++PG W+ Q   R        
Sbjct: 180 PANAPSRATLKLEEAWQVFLTPKQRQERLQPGMQAVDLGAAPGGWTWQFVRR-------G 232

Query: 96  TRVVAIDILDMEP 108
            RV A+D   + P
Sbjct: 233 IRVTAVDNGALAP 245


>gi|332140939|ref|YP_004426677.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|269969525|sp|B4RSU6|RLMM_ALTMD RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|327550961|gb|AEA97679.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 365

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 48  RARSAYKLLQ--IN-----EKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVV 99
            +RS  KL    +N     ++ ++L+S  R VDLG+ PG W+ Q+  R     A +  ++
Sbjct: 190 PSRSTLKLEDALVNMLSNKQQSKVLRSGGRAVDLGACPGGWTYQLVKRGMYVEAIDNGLI 249

Query: 100 AI 101
           A 
Sbjct: 250 AD 251


>gi|307709068|ref|ZP_07645527.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK564]
 gi|307620014|gb|EFN99131.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK564]
          Length = 434

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLAKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|307706865|ref|ZP_07643667.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK321]
 gi|307617738|gb|EFN96903.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK321]
          Length = 434

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLAKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|302670992|ref|YP_003830952.1| RNA methylase NOL1/NOP2/sun family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395465|gb|ADL34370.1| RNA methylase NOL1/NOP2/sun family [Butyrivibrio proteoclasticus
           B316]
          Length = 505

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 27/135 (20%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGS--------NANNTRVVAIDILDMEPILGVKFFK 116
           +   +I+DL ++PG  S Q+A R+ GS        N +  R+++++I  +          
Sbjct: 116 KPGEKILDLCAAPGGKSTQIAVRMGGSGILVTNEINRDRARILSLNIERL-------GIT 168

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSD-------MAYPTIGHRKIDHLRTMSLC----EAA 165
              +  ++ E +     G  D +L D       M               + LC    +  
Sbjct: 169 NALVLNETPENLANVFEGYFDKILVDAPCSGEGMFRKNENASSEWSPENVELCGIRQKEI 228

Query: 166 TFFALEMLNIGGDFL 180
              A  ML  GG  +
Sbjct: 229 LDAASRMLLPGGRLV 243


>gi|145683676|gb|ABP88817.1| polyprotein [Usutu virus]
          Length = 3434

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 6    GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYV-------QRAQLEGWR------ARSA 52
            G    R L ++ K +    S  D+L ++  +          ++A+ +G +      +R +
Sbjct: 2530 GRPGGRTLGEQWKEKLNGLSKEDFL-KYRKEAITEVDRSAARKARRDGNKTGGHPVSRGS 2588

Query: 53   YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
             KL  + E+ Q ++   ++VDLG   G WS  AA + G      
Sbjct: 2589 AKLRWMVER-QFVKPIGKVVDLGCGRGGWSYYAATLKGVQEVRG 2631


>gi|91205423|ref|YP_537778.1| hemolysin A [Rickettsia bellii RML369-C]
 gi|91068967|gb|ABE04689.1| Hemolysin A [Rickettsia bellii RML369-C]
          Length = 249

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
            D  V+  +   + +R A KL++  +  +I  S    +D GSS G +++V       
Sbjct: 50  TDIKVKLPK-HNYVSRGALKLIKALDHFKINPSGMVCIDFGSSTGGFTEVLLEQGAE 105


>gi|56692442|ref|YP_164264.1| polyprotein precursor [Usutu virus]
 gi|45378908|gb|AAS59402.1| polyprotein precursor [Usutu virus]
          Length = 3434

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 6    GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYV-------QRAQLEGWR------ARSA 52
            G    R L ++ K +    S  D+L ++  +          ++A+ +G +      +R +
Sbjct: 2530 GRPGGRTLGEQWKEKLNGLSKEDFL-KYRKEAITEVDRSAARKARRDGNKTGGHPVSRGS 2588

Query: 53   YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
             KL  + E+ Q ++   ++VDLG   G WS  AA + G      
Sbjct: 2589 AKLRWMVER-QFVKPIGKVVDLGCGRGGWSYYAATLKGVQEVRG 2631


>gi|300710727|ref|YP_003736541.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299124410|gb|ADJ14749.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 264

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 22/123 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+    ++DLGS  G    +AAR  G      RV+ +D+                +   +
Sbjct: 78  LRPGETVLDLGSGGGFDCFLAARRVGPEG---RVIGVDMTPE-------------MVEKA 121

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
            +   +   G     L ++ +  +    +D + +  +   +         A  +L  GG 
Sbjct: 122 RKNAEKNDAGTVSFRLGEIEHLPVADESVDAIVSNCVINLSADKPRVFAEAFRVLRPGGR 181

Query: 179 FLV 181
             V
Sbjct: 182 LAV 184


>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
 gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
          Length = 423

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 28/167 (16%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKF 114
           +N++    +  ++++DL ++PG  +   A +      +  VVA DI D +       +  
Sbjct: 238 LNKED--FKKAKKVLDLCAAPGGKTFNCAEVI-----DGFVVACDINDHKLDVLRENILR 290

Query: 115 FKFD--FLDLDSWEFIRQAIGGNPDLVLSD------MAYPTIGHRKIDHLRT-----MSL 161
             FD   +     E       G  D+V++D       A       K +           L
Sbjct: 291 LGFDNIIVAKSDAEIFNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHEL 350

Query: 162 CEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--FQKV 203
                  A   L  GG          +      +L  L KH  F  V
Sbjct: 351 QVRILDNAASYLKRGGLLFYSTCTLGRKENEETVLKFLDKHKDFSLV 397


>gi|282163359|ref|YP_003355744.1| putative methyltransferase [Methanocella paludicola SANAE]
 gi|282155673|dbj|BAI60761.1| putative methyltransferase [Methanocella paludicola SANAE]
          Length = 271

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 14/139 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+  + ++DLGS  G    ++A+  GS      V A   +        K      ++   
Sbjct: 65  LKPGQTVLDLGSGGGIDVFLSAQAVGSKGKAIGVDATPEMIWRARKAAKEMNATNVEFRL 124

Query: 125 WEF-IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
            E           D+V+S+        +           E A   A  +L  GG      
Sbjct: 125 GEIECMPVESNTVDVVISNCVINLSPDK-----------EKAFMEAFRVLRPGGKL--AV 171

Query: 184 FQGGTTNDILCLLKKHFQK 202
                T D+    ++ F+ 
Sbjct: 172 SDMVLTEDVKADEQEMFKS 190


>gi|241007814|ref|XP_002405180.1| protein arginine N-methyltransferase PRMT1, putative [Ixodes
           scapularis]
 gi|215491707|gb|EEC01348.1| protein arginine N-methyltransferase PRMT1, putative [Ixodes
           scapularis]
          Length = 510

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 20/138 (14%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           E +R     K L++N +  I    R ++D+G      +  AAR        +RV+ +D  
Sbjct: 219 EAYR-----KALEMNAETSI--KGRVVLDVGCGTAILAMFAAR-----CGASRVIGVDQS 266

Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMS-LC 162
           D+       F   D +  +        + G   D+ L       I    + +      + 
Sbjct: 267 DI------VFQAMDIVRENDLHGTVTLLKGRLEDIDLPVERVDVIVSEWMGYFLLFEGML 320

Query: 163 EAATFFALEMLNIGGDFL 180
           +         L  GG  L
Sbjct: 321 DTVLHARDHHLKPGGTLL 338


>gi|319948387|ref|ZP_08022528.1| putative methyltransferase [Dietzia cinnamea P4]
 gi|319437941|gb|EFV92920.1| putative methyltransferase [Dietzia cinnamea P4]
          Length = 201

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 33/125 (26%), Gaps = 16/125 (12%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
              ++D G  PG W+   A           V            G  F + D LD    E 
Sbjct: 42  GGPVLDAGCGPGHWTAHLAGAGMDVRGVDGVSEFVDHARAAHPGCCFEQAD-LDALPLE- 99

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
                    D  +S +               + L E A      +L  GG  LV  F G 
Sbjct: 100 ---------DASMSGVLAWYSLIHHEPEGIGVPLAEFA-----RVLRPGGHLLVGFFYGE 145

Query: 188 TTNDI 192
                
Sbjct: 146 LVERF 150


>gi|190576469|ref|YP_001974314.1| hypothetical protein Smlt4687 [Stenotrophomonas maltophilia K279a]
 gi|190014391|emb|CAQ48039.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 389

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 21/142 (14%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGV--------KFFKF 117
            + ++DL  + G ++  AA    S      VV IDI +  ++   G         KF + 
Sbjct: 216 GKSVLDLCCNTGGFAVYAAARGASE-----VVGIDIDEDVIQIAKGNSRLNNVRPKFIQS 270

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D      W       G   D+V+ D A  T    ++       L       AL ++  GG
Sbjct: 271 DIF---PWLRDAANRGEQYDVVILDPAKMTRDRDQVITALKKYLDMN--KLALGVVKPGG 325

Query: 178 DFLVKTFQG-GTTNDILCLLKK 198
            F   +  G    +  L +L++
Sbjct: 326 LFATFSCTGLVAEDQFLDMLRR 347


>gi|84684126|ref|ZP_01012028.1| UbiE/COQ5 methyltransferase [Maritimibacter alkaliphilus HTCC2654]
 gi|84667879|gb|EAQ14347.1| UbiE/COQ5 methyltransferase [Rhodobacterales bacterium HTCC2654]
          Length = 273

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 18/124 (14%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
             R ++DL    G+ +                 A+  L    +   +F + D + L    
Sbjct: 46  PGRTVLDLCCGHGNVAAGLVATGADVTGLDFSAAMLDLARANVPDARFVEGDAMTLP--- 102

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
                 G + D V      P +               AA   A  +L  GG      + G
Sbjct: 103 ----FAGADFDAVTIGFGMPHLPDPP-----------AALHEARRVLKPGGRIAFSVWCG 147

Query: 187 GTTN 190
              +
Sbjct: 148 PEVD 151


>gi|304439922|ref|ZP_07399816.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371661|gb|EFM25273.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 275

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 10/148 (6%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           +      +D+G   G+ +   A+          +V  DI          K    +   L+
Sbjct: 104 IPDGGIGLDIGCGSGALTIACAKKNPK----ATMVGCDIWRGTYKTEFSKELCENNAKLE 159

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               +R   G    L   D ++  +    + H  T    +      L +L  GG F++  
Sbjct: 160 EIANVRFEEGNAVKLPFRDESFDAVTSNYVYHNITGENKQKLLLETLRVLKKGGVFVIHD 219

Query: 184 FQG----GTTNDILCLLKKH-FQKVIHV 206
                  G  N  +  LKK  F+ V  +
Sbjct: 220 LMSKSRYGDMNKFMEKLKKDGFEDVQLI 247


>gi|283850922|ref|ZP_06368207.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
 gi|283573568|gb|EFC21543.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
          Length = 298

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 46  GWRARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           G  +R+  KL ++  +           +D+G SPG W+ V A +        +    D +
Sbjct: 144 GPPSRAYLKLWELFTRLGTHPGPGDLCLDMGGSPGGWAFVLASLGARVFCIDKAGLADNV 203

Query: 105 DMEPI 109
           D  P+
Sbjct: 204 DKNPL 208


>gi|254422218|ref|ZP_05035936.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Synechococcus sp. PCC 7335]
 gi|196189707|gb|EDX84671.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Synechococcus sp. PCC 7335]
          Length = 299

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 16/195 (8%)

Query: 8   SSRRGLTQKVKNRSCQGSSRDWLN---RHINDPYV-QRAQLEGWRARSAYKLLQINEKHQ 63
           ++   L +K++ R    SS  W      H++  Y  +  +    R ++   L++      
Sbjct: 2   TASTPLVEKIQ-RFYDASSPLWEKTWGEHMHHGYYGRNGRHRKNRRQAQIDLIEALIDWA 60

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLD 123
            L +   I+D+G   G  +   A+   + A     V I +  ++     +      +DL 
Sbjct: 61  GLTTAHTILDVGCGIGGSTLYLAKKFDAQA-----VGITLSPVQAKRAGERAAEQGIDLL 115

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TFFALEMLNIGG 177
           ++E    A        ++D           D + +M   E              +L  GG
Sbjct: 116 AYENFETAQAPAVQFQVTDALATPFPDGAFDFVWSMESGEHMPDKQGFLQECYRVLKPGG 175

Query: 178 DFLVKTFQGGTTNDI 192
            FL+ T+   +T  +
Sbjct: 176 TFLMATWCHRSTRTL 190


>gi|124295586|gb|ABN04193.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPAMLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|118472123|ref|YP_884514.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118173410|gb|ABK74306.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 237

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 25/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +     ++D+G  PG+ +   AR  G +     V                   D  +   
Sbjct: 79  IPPGGTVLDIGCGPGNITAQLARAAGLDGLALGV-------------------DISEPML 119

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE------AATFFALEMLNIGGD 178
              +    G     V +D           D   ++++ +      AA    + +L  GG 
Sbjct: 120 ARAVAAEAGRQVGFVRADAQQLPFRDEVFDAATSLAVFQLIPDPVAAVSEIVRVLKPGGR 179

Query: 179 FLVKT 183
             +  
Sbjct: 180 VAIMV 184


>gi|302417188|ref|XP_003006425.1| methyltransferase [Verticillium albo-atrum VaMs.102]
 gi|261354027|gb|EEY16455.1| methyltransferase [Verticillium albo-atrum VaMs.102]
          Length = 282

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 20/144 (13%)

Query: 39  VQRAQLEGWRAR-----SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
             RA      AR     +A+ L        ++    RI+D+G  PG+ +   A I     
Sbjct: 18  YSRATTSSHAARTIYSDAAFVL-------PLIDPADRILDVGCGPGTITTGFATIVPQGE 70

Query: 94  NNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
                ++ ++L              F    +       +G N  +V S   +P       
Sbjct: 71  VVGIDISDEVLATARSSVPAGLSNIFFQRANLLEGLPFLGDNFSVVFSSQVFP------- 123

Query: 154 DHLRTMSLCEAATFFALEMLNIGG 177
            HL T  +  AA      +   GG
Sbjct: 124 -HLATAEMRTAALKEMRRVTRPGG 146


>gi|228908996|ref|ZP_04072826.1| hypothetical protein bthur0013_31520 [Bacillus thuringiensis IBL
           200]
 gi|228850718|gb|EEM95542.1| hypothetical protein bthur0013_31520 [Bacillus thuringiensis IBL
           200]
          Length = 415

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +  +D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIVDEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  +    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNSFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEATVSPYKP 291


>gi|254410696|ref|ZP_05024474.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
 gi|196182051|gb|EDX77037.1| Methyltransferase domain family [Microcoleus chthonoplastes PCC
           7420]
          Length = 278

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF----DFL 120
           L+    ++DLG   G WS + A     N    RV+ +DI       G +  +     D +
Sbjct: 38  LKPGDWVLDLGCGAGLWSSMFAEKVKPNG---RVIGVDIDSRWIEYGEQNLEQNPLKDMI 94

Query: 121 DLDSWEFIRQAIGGN-PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +    +    +      DLV      P +        +   + +     A       G F
Sbjct: 95  EYRVDDLRNLSFAPETFDLVFISGCSPYLADIHAVLAQQKQITKKCGRIADR-SWDDGMF 153

Query: 180 LVKTFQGGTTNDILCLLKKHFQK 202
           +V       +  ++  + + F++
Sbjct: 154 IVHPISPYLSGKVMLAVAQAFEE 176


>gi|320588014|gb|EFX00489.1| umta methyltransferase family protein [Grosmannia clavigera kw1407]
          Length = 329

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 39/152 (25%)

Query: 45  EGWRARSAYKLLQINEKHQILQSN--------------RRIVDLGSSPGSWSQVAARITG 90
            G+   S++++  +N +H I +                +R++DLG+  G WS   A    
Sbjct: 43  PGYDDGSSFQVRPLNRRHHIYRLVLNGELHLAPIGEHPQRVLDLGTGTGIWSMDFADQYP 102

Query: 91  SNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
           S      V+  D+  ++P        F   DF +   +                D  +  
Sbjct: 103 SAE----VIGTDLSPIQPRWTPPNCTFEVDDFEEEWVYRR------------KFDYIHAR 146

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                I     +         A E L  GG F
Sbjct: 147 ELGGCIGDANQL------FRRAFENLTSGGHF 172


>gi|319406942|emb|CBI80579.1| hemolysin-like protein [Bartonella sp. 1-1C]
          Length = 249

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KLL   +   ++ +    +D+G+S G ++QV      S+     V+A+D+ 
Sbjct: 59  KSYVSRAALKLLYALDVFPVMTNKITAIDIGASTGGFTQVLLERGASH-----VIALDVG 113

Query: 105 DMEPILGVKFFKFDFLD----LDSWEFIRQAIGGN-PDLVLSDMA 144
             +    V+    D +     L+  +  ++ + G+  DL++SD++
Sbjct: 114 HNQ--FDVRLSGNDAITLLEGLNVRDLKQEHLNGHEIDLIVSDVS 156


>gi|198282338|ref|YP_002218659.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246859|gb|ACH82452.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 202

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 30/125 (24%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFK 116
           +    ++DL    G ++   AR       + R++  D+ +            +    F +
Sbjct: 38  KPGITVLDLCCGDGYFTAALARQV----EDGRILGFDLDEQMLAAAASVCAGLENCTFLQ 93

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D         + + +    D  L    +  +  + +           A   A  +L  G
Sbjct: 94  GD------AMALHRLLPEPVDYCLMANTFHGVPEQTV----------LAREIA-RVLKPG 136

Query: 177 GDFLV 181
           G F V
Sbjct: 137 GLFAV 141


>gi|322367899|ref|ZP_08042468.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320551915|gb|EFW93560.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 226

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 31/127 (24%), Gaps = 32/127 (25%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------MEPILGVKFFKF 117
           +    ++DLG   G     A R         RV  +D                 V +   
Sbjct: 37  EDGDTVLDLGCGSG----YAGRAVRDTKGAGRVYGLDGSPEMARNARGYTDDSNVSYLVG 92

Query: 118 DFLD-LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
           DF     + + I            +D   P    R++                  +L  G
Sbjct: 93  DFDHLPFADDSIDHVFTMEAFYYAND---PHETLREV----------------RRILRPG 133

Query: 177 GDFLVKT 183
           G F    
Sbjct: 134 GTFFCAV 140


>gi|317052167|ref|YP_004113283.1| type 11 methyltransferase [Desulfurispirillum indicum S5]
 gi|316947251|gb|ADU66727.1| Methyltransferase type 11 [Desulfurispirillum indicum S5]
          Length = 184

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           +    ++D+G  PG ++   A + G   +  RV+A DI  
Sbjct: 37  REGMTVLDIGCGPGFFTTDLADMVG---DRGRVIACDIQP 73


>gi|297206034|ref|ZP_06923429.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16]
 gi|297149160|gb|EFH29458.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16]
          Length = 781

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 17/157 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD---FLDL 122
           +  ++++DL ++PG  S        +                    ++ +  D     + 
Sbjct: 417 KPGQKVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAKNLRENIERWGADNCLVTNE 476

Query: 123 DS----WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TFFALEM 172
           D+     +F R       D   S        H  + +     + E +         A++M
Sbjct: 477 DTSHLAQKFPRFFDAILVDAPCSGEGMFRKNHDAVTYWSQEYVLECSNRQKEILNEAVKM 536

Query: 173 LNIGGDFL--VKTFQGGTTNDILCLLKKH--FQKVIH 205
           L  GG  L    T+      +I   L     F+ V  
Sbjct: 537 LKPGGSLLYSTCTYAPEEDEEICAYLVNELGFKLVET 573


>gi|222622281|gb|EEE56413.1| hypothetical protein OsJ_05572 [Oryza sativa Japonica Group]
          Length = 387

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSN--ANNTRVVAIDILDMEPILG-VKFFKFDFLD 121
           L  ++R++DL    G ++  AA+   +N    ++   A+D+ +   IL  +   +  F+ 
Sbjct: 208 LSKDQRVLDLCCYSGGFALNAAKGGANNVIGIDSSASALDLANKNIILNKLDTQRISFVK 267

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+  F++ AI  N    L  +  P +  RK        +  +    A++++  GG  + 
Sbjct: 268 EDATAFMKGAISRNEVWDLVILDPPKLAPRKKVLQSASGMYRSLNALAMQVVKPGGLLMT 327

Query: 182 KTFQGGTTN 190
            +  G  T 
Sbjct: 328 CSCSGAMTQ 336


>gi|115444525|ref|NP_001046042.1| Os02g0173700 [Oryza sativa Japonica Group]
 gi|49388970|dbj|BAD26187.1| SAM-dependent methyltransferase-like [Oryza sativa Japonica Group]
 gi|113535573|dbj|BAF07956.1| Os02g0173700 [Oryza sativa Japonica Group]
          Length = 346

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSN--ANNTRVVAIDILDMEPILG-VKFFKFDFLD 121
           L  ++R++DL    G ++  AA+   +N    ++   A+D+ +   IL  +   +  F+ 
Sbjct: 167 LSKDQRVLDLCCYSGGFALNAAKGGANNVIGIDSSASALDLANKNIILNKLDTQRISFVK 226

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+  F++ AI  N    L  +  P +  RK        +  +    A++++  GG  + 
Sbjct: 227 EDATAFMKGAISRNEVWDLVILDPPKLAPRKKVLQSASGMYRSLNALAMQVVKPGGLLMT 286

Query: 182 KTFQGGTTN 190
            +  G  T 
Sbjct: 287 CSCSGAMTQ 295


>gi|71280266|ref|YP_270215.1| putative RNA 2'-O-ribose methyltransferase [Colwellia
           psychrerythraea 34H]
 gi|84029352|sp|Q47YA5|RLMM_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|71146006|gb|AAZ26479.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 368

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 48  RARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
            +RS  KL +        +E  + L S    VDLGS+PG W+    R 
Sbjct: 189 PSRSTLKLDEAFLHFIPRDEWDERLTSGMNAVDLGSAPGGWTYQLVRR 236


>gi|269114896|ref|YP_003302659.1| Hemolysin A [Mycoplasma hominis]
 gi|268322521|emb|CAX37256.1| Hemolysin A [Mycoplasma hominis ATCC 23114]
          Length = 244

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           + +R AYKLL+  EK  I  +++  +D+GSS G +  V  R         +V A+D
Sbjct: 59  YVSRGAYKLLEAIEKFNINLTDKICLDIGSSTGGFVDVMLRHGAK-----KVYAVD 109


>gi|242814941|ref|XP_002486472.1| arsenite methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714811|gb|EED14234.1| arsenite methyltransferase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 303

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 49/200 (24%)

Query: 39  VQRAQLEG--WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
              A  +     + +A+ L  I       +   RI+D+G  PGS +   A+     +   
Sbjct: 17  YTLATQQSRTAESHAAFLLPHI-------EKGDRILDVGCGPGSITTGFAKYASEGSIVG 69

Query: 97  RVVAIDIL------------DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             ++ ++L              E    V F + + L+                L   D +
Sbjct: 70  VDISAEVLQKAKEAAAEAKIPSEGPGSVVFEQGNVLE---------------GLPYPDES 114

Query: 145 YPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDF-----LVKTFQGGTTNDILCLLKK 198
           +  +   ++  HL    L   A      +L  GG         + F   + N +  L   
Sbjct: 115 FDVVYASQLFGHLPPPDLPLRALAEMRRVLKPGGILATRDAADQHFYPRSLN-LDKLWVH 173

Query: 199 HFQKVIHVK------PVASR 212
           +F +V  +K      P ++R
Sbjct: 174 NFHRVASLKLAPEDDPTSTR 193


>gi|162453898|ref|YP_001616265.1| putative methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161164480|emb|CAN95785.1| putative methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 389

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+    +VDLGS  G  + +AA+  G    + RV+ ID+   M  +           D  
Sbjct: 59  LRRGDVVVDLGSGAGLDAFIAAKQVG---RSGRVIGIDMTPEMLEVARRNI------DPV 109

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPT-IGHRKIDHLRTMSLCEA---ATFFALEMLNIGGDF 179
           +            +  + +           +     ++LCE    A      +L  GG F
Sbjct: 110 TRALGYDEPNVRFEQSVIERLPLADSSVDVVLSNCVINLCEDKRDAFSEIFRVLKPGGRF 169

Query: 180 LV 181
           ++
Sbjct: 170 VI 171


>gi|134095439|ref|YP_001100514.1| putative cyclopropane-fatty-acyl-phospholipid synthase
           [Herminiimonas arsenicoxydans]
 gi|133739342|emb|CAL62392.1| Putative cyclopropane-fatty-acyl-phospholipid synthase
           [Herminiimonas arsenicoxydans]
          Length = 440

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 32/174 (18%)

Query: 27  RDWLNRH---------INDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           + WL++            D  +++AQ         +KL  I  K + L++  R +D+G  
Sbjct: 168 KLWLDKQMVYSCAYFESKDDTLEQAQE--------HKLDHICRKLR-LKAGERFLDVGCG 218

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
            G+    AAR  G  A+   +        +  +  +    D + ++  ++ R   G    
Sbjct: 219 WGAMVCWAARHYGVRAHGITLSQKQYEYAQARIQAEGM-GDLVTVELRDY-RDLEGEAVY 276

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL--EMLNIGGDFLVKTFQGGTT 189
             +S           I     + L     + A    +L  GG FL         
Sbjct: 277 DKIS----------SIGMFEHVGLANLPLYNATIKRVLRPGGLFLNHGITHDEE 320


>gi|46198486|ref|YP_004153.1| hemolysin [Thermus thermophilus HB27]
 gi|46196108|gb|AAS80526.1| hemolysin [Thermus thermophilus HB27]
          Length = 235

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E +  R AYKLL   E   +    +   DLG+S G ++QV            RV A+D+
Sbjct: 53  EERYVGRGAYKLLGALEAFPVEPRGKVAADLGASTGGFTQVLLER-----GVRRVYAVDV 107


>gi|317052704|ref|YP_004113820.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
 gi|316947788|gb|ADU67264.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
          Length = 316

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +   +++DL ++PG  +   A +  +    + V A+          V+ F    +     
Sbjct: 110 RPGEQVLDLAAAPGGKTLHLAALMENRGWISAVEAVKDRFFRLKANVEAFGASIVHTYLR 169

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS--------LCEAA------TFFALE 171
           +     +          +  P     +       S        + EAA       F A +
Sbjct: 170 DGRTVGLACPEHFDRVLLDAPCSSEARFHADNPASWQFWSPAKIREAARKQKPLLFSAWQ 229

Query: 172 MLNIGGDFL 180
            L  GG  +
Sbjct: 230 SLKPGGTMV 238


>gi|285019508|ref|YP_003377219.1| RNA 2'-O-ribose methyltransferase [Xanthomonas albilineans GPE
           PC73]
 gi|283474726|emb|CBA17225.1| putative rna 2'-o-ribose methyltransferase protein [Xanthomonas
           albilineans]
          Length = 349

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 60  EKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
           E+  +L+   R  DLG++PG W+ V  R  
Sbjct: 202 ERETLLRPGMRAADLGAAPGGWTWVLTRQH 231


>gi|260597765|ref|YP_003210336.1| cyclopropane fatty acyl phospholipid synthase [Cronobacter
           turicensis z3032]
 gi|260216942|emb|CBA30553.1| Cyclopropane-fatty-acyl-phospholipid synthase [Cronobacter
           turicensis z3032]
          Length = 423

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 42/192 (21%)

Query: 21  SCQGSSRDWL--NRHI---NDPYVQRAQLEG------WR-------ARSAYKLLQINEKH 62
           + Q   R W+    H    ND + +            W+       A+ A KL  I +K 
Sbjct: 146 NLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCGYWKEADNLEDAQQA-KLKLICDKL 204

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDF 119
             L+    ++D+G   G  +  AAR  G +     + A      +     L V     D+
Sbjct: 205 A-LKPGMTLLDIGCGWGGLAAFAARHYGVSVTGVTISAEQQKMAQARCEGLDVTILLQDY 263

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            DLDS             +V   M           +             A   L   G F
Sbjct: 264 RDLDSQ---------FDRIVSVGMFEHVGPKNYATYF----------DVADRNLKPDGLF 304

Query: 180 LVKTFQGGTTND 191
           L+ T     T++
Sbjct: 305 LLHTIGSRKTDN 316


>gi|237740345|ref|ZP_04570826.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229422362|gb|EEO37409.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 434

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + N  ++D+ ++PG  + V A    +      +             +K    D +     
Sbjct: 239 KPNDLVLDICAAPGGKTAVLAEEMKNKGEIIAIDIHQHKKKLIEENMKKLGIDIVKATVL 298

Query: 126 EFIR-QAIGGNPDLVLSDMAYPTIGH-------------RKIDHLRTMSLCEAATFFALE 171
           +       G   D +L D+  P  G+              + +     SL       A +
Sbjct: 299 DARNVNKQGRKFDKILVDV--PCSGYGVIRKKPEILYTKNRENIEELASLQLEILNSAAD 356

Query: 172 MLNIGGDFL---VKTFQGGTTNDILCLL--KKHFQKVIH 205
           +L  GG+ +           T ++   L  +K F KV  
Sbjct: 357 ILKDGGELIYSTCTIISQENTENVEKFLNERKEF-KVKA 394


>gi|227485570|ref|ZP_03915886.1| type 11 methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236436|gb|EEI86451.1| type 11 methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 275

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 9/139 (6%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           +      +D+G   G+ +   A+          +V  DI          K    D   L+
Sbjct: 104 IPDGGVGLDVGCGSGALTIACAKKNPK----ATMVGCDIWSGTYKSEFSKKLCEDNAKLE 159

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
             E ++   G   +L   D ++  +    + H       +        +L  GG F++  
Sbjct: 160 GVENVKFEEGNAVNLPFEDESFDAVTSNYVYHNIAGQNKQKLLLETFRVLKKGGVFVIHD 219

Query: 184 FQG----GTTNDILCLLKK 198
                  G  N  +  LKK
Sbjct: 220 LMNKSSYGDMNKFMEKLKK 238


>gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
 gi|153793969|gb|EDN76389.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
          Length = 448

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVA-------IDILDMEPILGVKFFKF 117
           +   R++D+ ++PG  +   A ++ G+ +   R ++        + ++   +  +   + 
Sbjct: 253 KKGDRVIDVCAAPGGKALHVAEKLRGTGSVEARDLSLYKVGLITENIERSGLTNIHAVQK 312

Query: 118 DFL--DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC---EAATFFALEM 172
           D    D D  +     I   P   L  +A  T    K     T  L          A   
Sbjct: 313 DATVCDADVKDAADLVIADLPCSGLGVLAKKTDLKYKATEQSTKELAGLQREILKNAASY 372

Query: 173 LNIGGDFL---VKTFQGGTTNDILCLLKKHFQKV 203
           +  GG  +             ++   LK+  + V
Sbjct: 373 VRPGGTLIYSTCTINPAENIENVHWFLKEFPEFV 406


>gi|262410950|gb|ACY66842.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2470

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSSF 1304


>gi|189409707|gb|ACD93571.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSSF 1304


>gi|189409704|gb|ACD93569.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSSF 1304


>gi|189409701|gb|ACD93567.1| non-structural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPP-CITSNTEMFFLFSSF 1304


>gi|141450|sp|P20187|YT37_STRFR RecName: Full=Uncharacterized 37.1 kDa protein in transposon TN4556
 gi|1196914|gb|AAA88564.1| unknown protein [Streptomyces fradiae]
          Length = 345

 Score = 38.0 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 35/151 (23%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
           Q A  +  R+   YK + ++      +     +DLG  PG+     A+   + + + RV+
Sbjct: 104 QLATTDAARS---YKSVMLDALD--ARPGESALDLGCGPGTDLGTLAK---AVSPSGRVI 155

Query: 100 AID---------ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
            ID             E +  V+    D   L           G+ D   +D     +  
Sbjct: 156 GIDSSQEMVEQARRRTENLPAVEVELGDIHTLP-------LEDGSIDCARTDRVLQHVAD 208

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
                         A   A  +L  GG  ++
Sbjct: 209 PA-----------QALAEARRVLRPGGRLVM 228


>gi|289667660|ref|ZP_06488735.1| oxidoreductase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 388

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPILGV--KFFKFDFL 120
           + + ++DL  + G ++  AA   G++      +  D++ +      +  V  KF + D  
Sbjct: 215 AGKTVLDLCCNTGGFAVYAAAR-GASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIF 273

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
               W       G   D+V+ D A  T    ++       L       AL ++  GG F 
Sbjct: 274 ---PWLRDASHRGDQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFA 328

Query: 181 VKTFQG-GTTNDILCLLKK 198
             +  G     + L +L++
Sbjct: 329 TFSCTGLVAEQEFLDMLRR 347


>gi|226359907|ref|YP_002777685.1| methyltransferase [Rhodococcus opacus B4]
 gi|226238392|dbj|BAH48740.1| putative methyltransferase [Rhodococcus opacus B4]
          Length = 208

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKF--FKFDFLDLDSWEF 127
           ++D G  PG W+   A      A       ID++        V++    FD  D ++ + 
Sbjct: 52  VLDAGCGPGQWTDFLA------ACGVAASGIDLVPEFVERARVRYPRLSFDVGDFEAVDA 105

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
             +++GG        +               + L E A      ++  GG  LV  F+G 
Sbjct: 106 AAESLGG--------VLSWYSLVHHSPQDIQIPLAEFA-----RVIRPGGGLLVGFFEGA 152

Query: 188 TTNDI 192
           T +  
Sbjct: 153 TVDTF 157


>gi|186939583|dbj|BAG31010.1| putative methylase [Bosea sp. AJ110407]
          Length = 330

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 14/137 (10%)

Query: 66  QSNRRIVDLGSSP--------GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           ++  R++DL +          G +          + +   V  +++ D +    V  F+ 
Sbjct: 162 EAVDRVLDLCTGSACLAIIAAGRFPNAEVDAVELSPDALDVARLNVADYDLDDRVHLFQG 221

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM------SLCEAATFFALE 171
           D       +     I   P +   ++A     +     +  +       L       A  
Sbjct: 222 DLFVPLDGQRYDLIIANPPYVTAEEVAAFPPEYASEPQMAHIAGNDGLDLVHRILAQARN 281

Query: 172 MLNIGGDFLVKTFQGGT 188
            LN GG  L +   G  
Sbjct: 282 HLNPGGGLLCEVGTGRE 298


>gi|304406690|ref|ZP_07388345.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
 gi|304344223|gb|EFM10062.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
          Length = 268

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 19/144 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +Q    ++D G   G    +AA I    A    + A   +DM     VK     F     
Sbjct: 46  IQPGETVIDWGCGTG---DLAAGIADKGAVVFGIDAS--VDMIERARVKHPSIKF---AV 97

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            +  R       D + S+ A   +           +            L  GG F+ +  
Sbjct: 98  EDGQRYRSEQPVDAIFSNAALHWMTDAAGTAASIAA-----------SLKPGGRFVAEFG 146

Query: 185 QGGTTNDILCLLKKHFQKVIHVKP 208
             G    +   L+  F+ V   KP
Sbjct: 147 GSGNVKAVTDALQSAFETVKPAKP 170


>gi|289662295|ref|ZP_06483876.1| oxidoreductase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 388

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPILGV--KFFKFDFL 120
           + + ++DL  + G ++  AA   G++      +  D++ +      +  V  KF + D  
Sbjct: 215 AGKTVLDLCCNTGGFAVYAAAR-GASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIF 273

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
               W       G   D+V+ D A  T    ++       L       AL ++  GG F 
Sbjct: 274 ---PWLRDASHRGDQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFA 328

Query: 181 VKTFQG-GTTNDILCLLKK 198
             +  G     + L +L++
Sbjct: 329 TFSCTGLVAEQEFLDMLRR 347


>gi|229167904|ref|ZP_04295635.1| hypothetical protein bcere0007_28640 [Bacillus cereus AH621]
 gi|228615544|gb|EEK72638.1| hypothetical protein bcere0007_28640 [Bacillus cereus AH621]
          Length = 415

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 18/158 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R              + + +       GV+   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKEEVKRLIASWKEEHVPIYKFIAEDGVEHVAWKIADEDVIA 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHF----QKVIHVKPV 209
               +VK   G +    L  + ++F      V   KP 
Sbjct: 255 DYNRVVKDLNGLSEEQFLKQIAQYFYVEEANVSPYKPK 292


>gi|325292121|ref|YP_004277985.1| hemolysin [Agrobacterium sp. H13-3]
 gi|325059974|gb|ADY63665.1| hemolysin [Agrobacterium sp. H13-3]
          Length = 250

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 15/96 (15%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KL    +   +       +D+G+S G +++V   +    A +   + +   
Sbjct: 62  QAYVSRAALKLTAALDHFGLDPKGHECLDVGASTGGFTEV---LLHRGAKHVTSIDVGHG 118

Query: 105 DMEPIL------------GVKFFKFDFLDLDSWEFI 128
            M P +              +F   D +D  S +FI
Sbjct: 119 QMHPRIENDSRVTNLEGLNARFLTTDDIDDRSVDFI 154


>gi|146278958|ref|YP_001169117.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557199|gb|ABP71812.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 422

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 21/149 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           Q   RI DL ++PG  +   A      A    V A+D+ +   +   +      L  +  
Sbjct: 232 QPGERIADLCAAPGGKTLQLA------AAGAEVTALDLSEPRLVRLRENLARTGLQAEVV 285

Query: 126 EF-IRQAIGGNPDLVLSDMAYPTIGHRKID-----------HLRTMSLCEAATFFALEML 173
              +    GG  D VL D      G  +                 ++L  A    AL ML
Sbjct: 286 AADLLAWEGGPFDAVLLDAPCSATGTIRRHPDLPFVKDGSELPALVALQSAMLDRALGML 345

Query: 174 NIGGDFL---VKTFQGGTTNDILCLLKKH 199
             GG  +       +      +  LL++H
Sbjct: 346 KPGGRLVFCTCSLLEEEGEAQLSALLERH 374


>gi|282882352|ref|ZP_06290980.1| methyltransferase type 11 [Peptoniphilus lacrimalis 315-B]
 gi|281297773|gb|EFA90241.1| methyltransferase type 11 [Peptoniphilus lacrimalis 315-B]
          Length = 275

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 10/148 (6%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLD 123
           +      +D+G   G+ S   A+          +V  DI          K    D   L+
Sbjct: 104 IPDGGVGLDVGCGSGALSIACAKKNPK----ATMVGCDIWSGSYKSEFSKKLCEDNAKLE 159

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
               ++   G   +L   D ++  +    + H  T    +        +L  GG F++  
Sbjct: 160 GLANVKFEEGNAVNLPFEDQSFDAVTSNYVYHNITGQNKQKLLLETFRVLKKGGVFVIHD 219

Query: 184 FQG----GTTNDILCLLKKH-FQKVIHV 206
                  G  N  +  LKK  +Q V  +
Sbjct: 220 LMNKSSYGDMNKFMEKLKKDGYQDVRLI 247


>gi|237731375|ref|ZP_04561856.1| cyclopropane fatty acyl phospholipid synthase [Citrobacter sp.
           30_2]
 gi|226906914|gb|EEH92832.1| cyclopropane fatty acyl phospholipid synthase [Citrobacter sp.
           30_2]
          Length = 382

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA-IDILDME 107
           A+ A KL  I EK Q L+   R++D+G   G  SQ  A   G +     + A    +  E
Sbjct: 151 AQQA-KLKMIAEKLQ-LKPGMRVLDIGCGWGGLSQFMASQYGVSVVGVTISAEQQKMAQE 208

Query: 108 PILG--VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
              G  V     D+ D          +    D ++S   +  +G +              
Sbjct: 209 RCAGLDVTILLQDYRD----------LNDKFDRIVSVGMFEHVGPKNYATY--------- 249

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTND 191
                  L   G FL+ +     T++
Sbjct: 250 FEVVDRNLKPDGLFLLHSIGSKKTDN 275


>gi|156936862|ref|YP_001434658.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I]
 gi|156565846|gb|ABU81251.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I]
          Length = 326

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---MEPILGVKFFKFDFLDL 122
           +    + DL S+PG  +   A++ G++     +          M  +  ++    + +  
Sbjct: 128 KPGETVADLASAPGGKATHLAQLMGNSGRLILIERRRDRAKALMSNLERMEILNANVIID 187

Query: 123 DSWEFIRQAIGGNPDLVLSDMA-------YPTIGHRKIDHLRTMSLCEAA-TFFALEMLN 174
           D++   +        L                   R+ + L  M   +A     AL+ L 
Sbjct: 188 DAYNASKYGPFDKALLDAPCTGEGVIARDPSRKRSRRPEDLALMHKVQAMLLNRALDSLK 247

Query: 175 IGGDFL 180
            GG+ +
Sbjct: 248 PGGELV 253


>gi|56692454|ref|YP_164818.1| NS5 [Usutu virus]
          Length = 905

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 6   GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYV-------QRAQLEGWR------ARSA 52
           G    R L ++ K +    S  D+L ++  +          ++A+ +G +      +R +
Sbjct: 1   GRPGGRTLGEQWKEKLNGLSKEDFL-KYRKEAITEVDRSAARKARRDGNKTGGHPVSRGS 59

Query: 53  YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
            KL  + E+ Q ++   ++VDLG   G WS  AA + G      
Sbjct: 60  AKLRWMVER-QFVKPIGKVVDLGCGRGGWSYYAATLKGVQEVRG 102


>gi|254516007|ref|ZP_05128067.1| methyltransferase type 11 [gamma proteobacterium NOR5-3]
 gi|219675729|gb|EED32095.1| methyltransferase type 11 [gamma proteobacterium NOR5-3]
          Length = 238

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 14/128 (10%)

Query: 58  INEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI----LDMEPILGVK 113
           ++  +  +Q  +R++DLG   G     A  + G +A    +   D+      ME   G  
Sbjct: 4   LDRNYFPMQPGQRVLDLGCGEGRHVIAACALDGVDAVGVDLSLEDLATARQRMEEFRGES 63

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
                  +  +   +    G    L  +D ++  +   ++          +A      +L
Sbjct: 64  ------TEDSALFLL--LAGDALRLPFADASFDAVICSEVLEHIPDY--RSALAEISRVL 113

Query: 174 NIGGDFLV 181
             GG F  
Sbjct: 114 KPGGRFCA 121


>gi|317485219|ref|ZP_07944100.1| hypothetical protein HMPREF0179_01453 [Bilophila wadsworthia 3_1_6]
 gi|316923510|gb|EFV44715.1| hypothetical protein HMPREF0179_01453 [Bilophila wadsworthia 3_1_6]
          Length = 318

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 48  RARSAYKLLQINEKHQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            +R+  KL +      +L          +DLGS+PG W+ V A +        +V +ID 
Sbjct: 164 PSRAYLKLWE---SFTLLPKRPGPGDLCLDLGSAPGGWTWVLASL------GAQVFSIDK 214

Query: 104 LDMEP----ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
             + P    + GV         LD          G  D + SDM
Sbjct: 215 APLAPQVDHMPGVSHCIGSGFALDPRHA------GAVDWLFSDM 252


>gi|313125402|ref|YP_004035666.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312291767|gb|ADQ66227.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 262

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 19/159 (11%)

Query: 40  QRAQLEG--WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
           + A+ E   +R ++A    ++  +   LQ   R++ +G  PG      A + G+   +  
Sbjct: 10  KEARQEAAIYRTQAAADRRELVRETLDLQRGDRVLSIGCGPGFEP---AELAGAVGESGY 66

Query: 98  VVAIDILD-MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHL 156
           V  ID  + M  +                +  + A+     L L            +   
Sbjct: 67  VHGIDRSEAMLTLAN----------QRCDDLPQAALSKGNALDLPVADESFDAAVAVQVF 116

Query: 157 RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
             +   +AA      +L  GG  +V        + ++  
Sbjct: 117 EYLDRVDAAVNELARVLRPGGRAVV---CDADFDSLVWR 152


>gi|55980515|ref|YP_143812.1| hemolysin [Thermus thermophilus HB8]
 gi|55771928|dbj|BAD70369.1| hemolysin [Thermus thermophilus HB8]
          Length = 235

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E +  R AYKLL   E   +    +   DLG+S G ++QV            RV A+D+
Sbjct: 53  EERYVGRGAYKLLGALEAFPVEPRGKVAADLGASTGGFTQVLLERGAR-----RVYAVDV 107


>gi|171673115|gb|ACB47438.1| L polymerase protein [Cocal virus]
          Length = 2108

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 118  DFLDLDSWE---FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            D  D  +W+    +++  G   DL++ DM                            +L 
Sbjct: 1735 DLSDPATWDYFVKLKKGTGLCLDLIVMDMEVRDPSMSLKIEQNLRHNIH-------NLLQ 1787

Query: 175  IGGDFLVKTFQG---GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              G  + KT+         ++L LL  +FQ+V  V+   S +++ E++ + +G +
Sbjct: 1788 QEGTLIYKTYGTHLVEAEENVLTLLGPYFQRVELVQTDYSSSQTSEVYFVGRGLK 1842


>gi|330508737|ref|YP_004385165.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929545|gb|AEB69347.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 250

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 32/128 (25%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----------MEPILGVK 113
           ++    ++DLGS  G  S +AA   G      +V+ +D+             +     V+
Sbjct: 73  IKEGETVLDLGSGAGFDSFLAANRVGPTG---KVIGVDMTPEMINRARENAAIGGYSNVQ 129

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           F   +  DL   +        + D+V+S+     +  +K            A   A  +L
Sbjct: 130 FLPGELEDLPVED-------NSVDIVISNCVINLVPDKKK-----------AFMEAFRVL 171

Query: 174 NIGGDFLV 181
             GG  +V
Sbjct: 172 KPGGRLMV 179


>gi|114778275|ref|ZP_01453134.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol methylase
           [Mariprofundus ferrooxydans PV-1]
 gi|114551377|gb|EAU53933.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol methylase
           [Mariprofundus ferrooxydans PV-1]
          Length = 237

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 22/151 (14%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           LLQ++         + I++LG           R   +  N+ +++A   L+++ I     
Sbjct: 22  LLQLD--------GKSILELGCG----KAEITRAIATEGNDRQIIA---LEVDEIQHRNH 66

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
              D  DL + EFI     G  ++  +D +   +   K  H   + L + A      +L 
Sbjct: 67  LAID--DLPNVEFIMA---GAEEIPCADNSIDVVFMFKSLHHVPLELMDRALLEIRRVLK 121

Query: 175 IGG-DFLVKTFQGGTTNDILCLLKKHFQKVI 204
            GG  ++ +    G  ND+L +     ++V 
Sbjct: 122 PGGYAYISEPVYAGDFNDLLKMFHDE-EQVR 151


>gi|327355275|gb|EGE84132.1| methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 332

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSW 125
           +R +DLG+  G W    A   G    + + + +D+  ++P      VKF+  D       
Sbjct: 108 QRALDLGTGTGLW----ALDFGDEYPSAQAIGVDLSPIQPTWVAPNVKFYVDDIETD--- 160

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--- 182
                +     DL+ S     ++G+ K    +            LE L  GG   ++   
Sbjct: 161 --WAYSRDEPFDLIHSRQIGGSVGNWKKLLAQ-----------CLEHLKPGGWLELQEPE 207

Query: 183 TFQGGTTNDILC 194
            +     + +  
Sbjct: 208 AWMSSDDDTMER 219


>gi|332073709|gb|EGI84188.1| nop2p [Streptococcus pneumoniae GA17570]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|327389588|gb|EGE87933.1| nop2p [Streptococcus pneumoniae GA04375]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|301802143|emb|CBW34880.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae INV200]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|242794113|ref|XP_002482306.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218718894|gb|EED18314.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 322

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 25/114 (21%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           ++++D+G   G+W+ + A +      N RV+  ++  ++P    L V+F+  D  D  ++
Sbjct: 88  QKVLDIGCGTGAWAIMIADMFP----NARVIGTELSPIQPSMVPLNVRFYIEDAEDEWTF 143

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +     + G               H                  A   L  GG  
Sbjct: 144 DKGFDLVHGR--------MLAGSIHDWTKFFGQ----------AFAQLKPGGWL 179


>gi|168493306|ref|ZP_02717449.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC3059-06]
 gi|225854849|ref|YP_002736361.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae JJA]
 gi|183576723|gb|EDT97251.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC3059-06]
 gi|225722175|gb|ACO18028.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae JJA]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|148993038|ref|ZP_01822632.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168489567|ref|ZP_02713766.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP195]
 gi|225857037|ref|YP_002738548.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae P1031]
 gi|147928239|gb|EDK79256.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183571889|gb|EDT92417.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP195]
 gi|225724613|gb|ACO20465.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae P1031]
 gi|301794442|emb|CBW36876.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae INV104]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|149011643|ref|ZP_01832839.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP19-BS75]
 gi|221232142|ref|YP_002511295.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae ATCC 700669]
 gi|147764074|gb|EDK71006.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP19-BS75]
 gi|220674603|emb|CAR69166.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae ATCC 700669]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|116516379|ref|YP_816700.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae D39]
 gi|148997544|ref|ZP_01825149.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP11-BS70]
 gi|149002792|ref|ZP_01827718.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS69]
 gi|168575861|ref|ZP_02721776.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae MLV-016]
 gi|182684360|ref|YP_001836107.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CGSP14]
 gi|237649322|ref|ZP_04523574.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CCRI 1974]
 gi|237820947|ref|ZP_04596792.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254557|ref|ZP_07340661.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS455]
 gi|303258998|ref|ZP_07344977.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP-BS293]
 gi|303261682|ref|ZP_07347629.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303264351|ref|ZP_07350271.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS397]
 gi|303265850|ref|ZP_07351747.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS457]
 gi|303268183|ref|ZP_07353982.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS458]
 gi|307068055|ref|YP_003877021.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
 gi|116076955|gb|ABJ54675.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae D39]
 gi|147756599|gb|EDK63640.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP11-BS70]
 gi|147759086|gb|EDK66080.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS69]
 gi|182629694|gb|ACB90642.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CGSP14]
 gi|183578178|gb|EDT98706.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae MLV-016]
 gi|302598525|gb|EFL65567.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS455]
 gi|302637262|gb|EFL67750.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302639941|gb|EFL70397.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP-BS293]
 gi|302642262|gb|EFL72610.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS458]
 gi|302644585|gb|EFL74835.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS457]
 gi|302646163|gb|EFL76390.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS397]
 gi|306409592|gb|ADM85019.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
           AP200]
 gi|332074983|gb|EGI85455.1| nop2p [Streptococcus pneumoniae GA41301]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|25121484|ref|NP_740704.1| nonstructural protein P2 [O'nyong-nyong virus]
          Length = 798

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
              +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 667 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 725

Query: 183 T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              +   T+  ++ +L + F+    +KP      + EMF L   F
Sbjct: 726 AYGYADRTSERVISVLGRKFRSSRALKPQ-CITSNTEMFFLFSRF 769


>gi|81984655|sp|O90370|POLN_ONNVI RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|3396059|gb|AAC97206.1| nonstructural polyprotein [Igbo Ora virus]
          Length = 2513

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++ +L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVISVLGRKFRSSRALKPQ-CITSNTEMFFLFSRF 1304


>gi|81984654|sp|O90368|POLN_ONNVS RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|3396054|gb|AAC97204.1| nonstructural polyprotein [O'nyong-nyong virus]
          Length = 2513

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++ +L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVISVLGRKFRSSRALKPQ-CITSNTEMFFLFSRF 1304


>gi|15903302|ref|NP_358852.1| hypothetical protein spr1259 [Streptococcus pneumoniae R6]
 gi|15458898|gb|AAL00063.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
          Length = 267

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA + G     +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLAGEGLLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSLDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|9627008|ref|NP_041254.1| hypothetical protein [O'nyong-nyong virus]
 gi|130541|sp|P13886|POLN_ONNVG RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
            nsP1234; Short=P1234; Contains: RecName: Full=P123;
            Contains: RecName: Full=mRNA-capping enzyme nsP1;
            AltName: Full=Non-structural protein 1; Contains:
            RecName: Full=Protease nsP2; AltName: Full=Non-structural
            protein 2; Short=nsP2; Contains: RecName:
            Full=Non-structural protein 3; Short=nsP3; Contains:
            RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
            Full=Non-structural protein 4; Short=nsP4
 gi|332559|gb|AAA46784.1| O'Nyong-nyong polyprotein A [O'nyong-nyong virus]
          Length = 2514

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVK 182
               +G    L   D+    I      H       + A         +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQ-QCVDHAMKLQMLGGDSLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++ +L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVISVLGRKFRSSRALKPQ-CITSNTEMFFLFSRF 1304


>gi|261192711|ref|XP_002622762.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239589244|gb|EEQ71887.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239610220|gb|EEQ87207.1| methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 342

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSW 125
           +R +DLG+  G W    A   G    + + + +D+  ++P      VKF+  D       
Sbjct: 108 QRALDLGTGTGLW----ALDFGDEYPSAQAIGVDLSPIQPTWVAPNVKFYVDDIETD--- 160

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK--- 182
                +     DL+ S     ++G+ K    +            LE L  GG   ++   
Sbjct: 161 --WAYSRDEPFDLIHSRQIGGSVGNWKKLLAQ-----------CLEHLKPGGWLELQEPE 207

Query: 183 TFQGGTTNDILC 194
            +     + +  
Sbjct: 208 AWMSSDDDTMER 219


>gi|212639278|ref|YP_002315798.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
           domain [Anoxybacillus flavithermus WK1]
 gi|212560758|gb|ACJ33813.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized
           domain [Anoxybacillus flavithermus WK1]
          Length = 457

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 23/133 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFL 120
               R++DL ++PG  +   A +  +      ++A +I       +   +         +
Sbjct: 105 SPGERVLDLCAAPGGKTTQLAALMNNEGF---LLANEIHPKRVKALSENIERLGITNAVV 161

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGH------------RKIDH-LRTMSLCEAATF 167
             ++ E + +   G  D +L D   P  G               ++H  +          
Sbjct: 162 TNETPEKLSETFEGFFDKILVD--APCSGEGMFRKDEEAIQFWSLEHVQKCAQTQRHILS 219

Query: 168 FALEMLNIGGDFL 180
            A +ML+ GG  +
Sbjct: 220 CAYKMLSEGGTLV 232


>gi|187928794|ref|YP_001899281.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia pickettii
           12J]
 gi|309783431|ref|ZP_07678137.1| cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia sp.
           5_7_47FAA]
 gi|187725684|gb|ACD26849.1| Cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia pickettii
           12J]
 gi|308917830|gb|EFP63521.1| cyclopropane-fatty-acyl-phospholipid synthase [Ralstonia sp.
           5_7_47FAA]
          Length = 447

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  +  K + L+   R++D+G   G+    AAR  G +A+   +    +      + ++
Sbjct: 194 KLEHVCRKLR-LRPGERLLDIGCGWGALVCWAAREHGVHAHGITLSERQLEYARERIRIE 252

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             + D + ++  ++      G  D V S   +  +G R +     +            ML
Sbjct: 253 GLQ-DRVTVELRDYRDLEGEGVYDKVSSIGMFEHVGLRNLPAYYAVV---------RRML 302

Query: 174 NIGGDFLVKTFQGGTT 189
             GG FL         
Sbjct: 303 KPGGLFLNHGITHDEE 318


>gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
 gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           kodakarensis KOD1]
          Length = 450

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 24/134 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-----ILDMEPI---LGVKF--- 114
           +    +VDL ++PG  +   A +     N  ++ A D     I  M+ +    GV+    
Sbjct: 249 KPGETVVDLAAAPGGKTAHMAELME---NRGKIYAFDVDSARIKRMKEVLKRTGVEIAEV 305

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH--------RKIDHLRTMSLCEAAT 166
            K D    ++ E + + I     L     +  TI          R+ +  + ++L +   
Sbjct: 306 IKADGR--NAPELLGEEIADRVLLDAPCTSDGTIAKNPELRWRLREKNIPKVVALQKELM 363

Query: 167 FFALEMLNIGGDFL 180
             A ++L  GG  L
Sbjct: 364 ESAWKLLKPGGRLL 377


>gi|240167848|ref|ZP_04746507.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium kansasii ATCC 12478]
          Length = 271

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           L+   R++D+G  PG  S +AAR+ G       V A
Sbjct: 37  LRPGMRVLDVGCGPGDVSFIAARLVGPTGTVLGVDA 72


>gi|226313940|ref|YP_002773836.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226096890|dbj|BAH45332.1| probable ribosomal RNA small subunit methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 470

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 31/137 (22%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEPIL--------GVKFFK 116
           Q   RI+DL ++PG  S Q+AA + G       +VA +I  +            GV    
Sbjct: 102 QPGERILDLCAAPGGKSTQLAAFLHGQ----GMLVANEIHPVRAKALSENLERCGVTNA- 156

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRK---IDHLRTMSLCE 163
              +  ++ E +++      D +L D               I       +     M    
Sbjct: 157 --VVTNETPERLQERFPQFFDRILVDAPCSGEGMFRKLPEAIEDWSPAKVTECHVMQ--G 212

Query: 164 AATFFALEMLNIGGDFL 180
                A  ML  GG  +
Sbjct: 213 DILEAAAAMLKPGGTLV 229


>gi|92115681|ref|YP_575410.1| ubiquinone/menaquinone biosynthesis methyltransferase [Nitrobacter
           hamburgensis X14]
 gi|122418973|sp|Q1QS47|UBIE_NITHX RecName: Full=Ubiquinone/menaquinone biosynthesis methyltransferase
           ubiE
 gi|91798575|gb|ABE60950.1| demethylmenaquinone methyltransferase /
           2-octaprenyl-6-methoxy-1,4-benzoquinone methylase
           [Nitrobacter hamburgensis X14]
          Length = 253

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 18/131 (13%)

Query: 79  GSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138
           G    +A R   +     R    DI              D L +     I+Q +      
Sbjct: 74  GGTGDIAFRAAKAAGLGFRATVCDINP------------DMLAVGHERAIKQHLDHQVSF 121

Query: 139 VLSDMAYPTIGHRKIDHLRTMS------LCEAATFFALEMLNIGGDFLVKTFQGGTTNDI 192
           V  +        R  D              ++A   A  +L  GG FL   F       +
Sbjct: 122 VEGNAETLAFADRSFDAYTIAFGIRNVPRIDSALREAFRVLKPGGRFLCLEFSTVDVPGL 181

Query: 193 LCLLKKHFQKV 203
             +      KV
Sbjct: 182 DKIYDLFSFKV 192


>gi|148263695|ref|YP_001230401.1| cyclopropane-fatty-acyl-phospholipid synthase [Geobacter
           uraniireducens Rf4]
 gi|146397195|gb|ABQ25828.1| Cyclopropane-fatty-acyl-phospholipid synthase [Geobacter
           uraniireducens Rf4]
          Length = 431

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 27/147 (18%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I  K + L++  R +D+G   GS    AA   G       V A  I   +P     
Sbjct: 188 KLDYICRKLR-LKAGERFLDIGCGWGSLVMHAAENYG-------VDAFGITLSQPQA--- 236

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA-------- 165
                     + E IR+    N   V        +G  + D L ++ + E          
Sbjct: 237 --------ELAKERIRRLGLENRCRVEVCDYREVLGESRFDKLASIGMFEHVGTSHLQEY 288

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDI 192
              A  +L  GG FL     G  +   
Sbjct: 289 FERAWRLLKPGGVFLNHGIAGSLSEPF 315


>gi|296411932|ref|XP_002835682.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629471|emb|CAZ79839.1| unnamed protein product [Tuber melanosporum]
          Length = 361

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 55  LLQINEKHQI--LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME--PIL 110
           LL++++K  +  L++ RRI+D+G+  G W+            N R++  D+  ++  P  
Sbjct: 105 LLRMDDKLHLAPLENPRRILDIGTGTGIWAIE----MAFKYPNARIIGTDLSPIQVSPPA 160

Query: 111 GVKFFKFD 118
              F   D
Sbjct: 161 NCSFEVED 168


>gi|319403928|emb|CBI77516.1| hemolysin-like protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 237

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 12/105 (11%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           + + +R+A KLL   +   ++ +    +D+G+S G ++QV      S      V+A+D+ 
Sbjct: 47  QSYVSRAALKLLYALDVFPVMTNKITAIDVGASTGGFTQVLLERGAS-----YVIALDVG 101

Query: 105 DMEPILGVKFFKFDFLD----LDSWEFIRQAIGGN-PDLVLSDMA 144
             +    V+    D +     L+  +  ++ + G+  DL++SD++
Sbjct: 102 HNQ--FDVRLSGNDAITLLEGLNVRDLKQEHLNGHEIDLIVSDVS 144


>gi|41057601|ref|NP_958055.1| large protein [Mossman virus]
 gi|33637711|gb|AAQ23993.1| large protein [Mossman virus]
          Length = 2205

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 119  FLDLDSWEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +L+ + +I   +  G   LV  DM        K  H     +C      AL +   G 
Sbjct: 1869 IGNLECFSYILNQVKLGTCSLVHCDME---GVGDKTSHQVLEEMC-HVISLALAVGEYGS 1924

Query: 178  DFLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             F++K    G     +I+ ++ +H+ + +   P  S  +S E++++  G +
Sbjct: 1925 CFVLKMMPLGQDWSAEIIRVISEHYDETLIYIPWFSNPDSTEVYVIGIGLK 1975


>gi|115399204|ref|XP_001215191.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114192074|gb|EAU33774.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 321

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 36/147 (24%)

Query: 55  LLQINEKHQILQ-------------SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAI 101
           L +++ +H +L+             + +RI+D+G+  G W    A I         ++  
Sbjct: 46  LDRLDMQHHMLKLANNGRLFFAPVQNPKRILDIGTGSGIWPIEMASIFPQAE----IIGT 101

Query: 102 DILDMEP---ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT 158
           D+  ++P      V F   D +D D        + G          +          L  
Sbjct: 102 DLSPVQPTEVPENVHFLVDDAIDDD-------WLWGPDHFDFIHTGHLCGAFPSFKDL-- 152

Query: 159 MSLCEAATFFALEMLNIGGDFLVKTFQ 185
                       E L  GG      F 
Sbjct: 153 -------LRKIFEHLKPGGYVECHEFD 172


>gi|20091604|ref|NP_617679.1| hypothetical protein MA2781 [Methanosarcina acetivorans C2A]
 gi|19916767|gb|AAM06159.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 197

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           + ++  + ++DLG  PG +S   A++ G      RV+++DI D
Sbjct: 34  RYIKEGQTVLDLGCGPGFFSLAMAKLVGEEG---RVISVDIQD 73


>gi|283835424|ref|ZP_06355165.1| putative RNA 2'-O-ribose methyltransferase [Citrobacter youngae
           ATCC 29220]
 gi|291068597|gb|EFE06706.1| putative RNA 2'-O-ribose methyltransferase [Citrobacter youngae
           ATCC 29220]
          Length = 366

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|161506476|ref|YP_001573588.1| putative RNA 2'-O-ribose methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189040351|sp|A9MSA2|RLMM_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|160867823|gb|ABX24446.1| hypothetical protein SARI_04682 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 366

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|157148351|ref|YP_001455670.1| putative RNA 2'-O-ribose methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|166199435|sp|A8AP21|RLMM_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|157085556|gb|ABV15234.1| hypothetical protein CKO_04169 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEALHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 436

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 34/175 (19%)

Query: 53  YK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           +K  L+ I +K  +        +   +++D  S+PG  +   A I     +   V A DI
Sbjct: 226 FKDGLISIQDKSSMFIGELMALKEGDQVLDACSAPGGKACHIAEILNGTGH---VDATDI 282

Query: 104 ---------LDMEPIL--GVKFFKFDFLD--LDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
                     ++  +    +  F+ D  +     ++ I   +   P   L  + +     
Sbjct: 283 HEHKIDLIDFNIRKLRLSNISAFEHDATEKYDKVYDKI---LVDAPCSGLGVLRHKPEIK 339

Query: 151 RKIDHLRTMSLCEAATFFALEM---LNIGGDFL---VKTFQGGTTNDILCLLKKH 199
            +       SL E        +   +  GG  +       Q    N +   LK++
Sbjct: 340 YEQSQHAIESLVEIQLEILNNVKYNVKPGGTMIYSTCTIEQMENENVVYTFLKEN 394


>gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           warneri L37603]
 gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
           warneri L37603]
          Length = 435

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 49  ARSAYK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNT--- 96
           +R A+K  L+ I +K  +          +  ++D  S+PG  +   A I     +     
Sbjct: 222 SR-AFKDGLVSIQDKSSMFVAHIMGLNRDDSVLDACSAPGGKACHIAEILSPEGHVDATD 280

Query: 97  ------RVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTIG 149
                 +++  +I  +  +  +K ++ D     + ++ +  +        +         
Sbjct: 281 IHDHKIKLIDFNIRKLR-LKNIKAYQHDATKPYNNQYDKILVDAPCSGFGVLRHKPEIKY 339

Query: 150 HRKIDHLRTM-SLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
            +  + ++++  L           +  GG  +       Q    N +   LK++
Sbjct: 340 TQSKNSIQSLVELQLQILENVKHNVKPGGSIIYSTCTIEQMENENVVYTFLKQN 393


>gi|237729770|ref|ZP_04560251.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908376|gb|EEH94294.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 366

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEALHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|189218158|ref|YP_001938800.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
 gi|189185016|gb|ACD82201.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
          Length = 284

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+    ++DLGS  G    +AAR  G +    +V+ +D+   M            + +++
Sbjct: 89  LKEGETVLDLGSGGGFDCFLAARQVGESG---KVIGVDMTPEMVARAQANALLGHYTNVE 145

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                   +G    L + D     I    + +L      +     A  +L  GG
Sbjct: 146 ------FRLGKIEHLPVGDATIDVIISNCVINLSAEK--QKVFSEAFRVLKPGG 191


>gi|311112967|ref|YP_003984189.1| CheR methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944461|gb|ADP40755.1| CheR methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 216

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 34/183 (18%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH---------QILQSNRRIVDLGSSPG 79
           WL +  NDP    A  + +  R  +K ++   K           +     +I+D GS PG
Sbjct: 17  WLIKKENDP----AHSQWYIDR--FKAMEAEGKDMAGESRLVNALASRGAKILDAGSGPG 70

Query: 80  SWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIG 133
              +        +A   RV  +DI                +   D +D      + QA+G
Sbjct: 71  RVGKQL------HALGHRVTGVDIDPELIDEARRVCPEATWVTADLVD------LPQALG 118

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D    D     +    +      S  +       ++L  GG  ++    G   +   
Sbjct: 119 FESDAG-EDGFELIVCAGNVMGFLARSTRKPVLENFRKVLAPGGRAVIGYGSGPGRDYAF 177

Query: 194 CLL 196
              
Sbjct: 178 AQF 180


>gi|167565750|ref|ZP_02358666.1| putative methyltransferase [Burkholderia oklahomensis EO147]
          Length = 362

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+ + R++D+G   G  S +AA + G       VVAID  D+             +D  +
Sbjct: 129 LRPSMRVLDIGCGTGGVSMLAAEMVGPTGT---VVAIDQSDIA------------IDAAT 173

Query: 125 WEFIRQAIGG--NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGG--- 177
               R  +         L  +         I     M     A F   A   +  GG   
Sbjct: 174 ANAERARLHNIRFRACGLDQVEGVHSFDVVIARCVLMHQLHVAEFIRHAARFVKPGGFIA 233

Query: 178 ----DFLVKTFQGGTTN-------DILCLLKKHF 200
               DFL K       N       +IL   K+ F
Sbjct: 234 FHEPDFLRKPMSMPPINLWDSVAMEILDRCKRMF 267


>gi|20093312|ref|NP_619387.1| hypothetical protein MA4527 [Methanosarcina acetivorans C2A]
 gi|19918671|gb|AAM07867.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 183

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   +I+D G   GS+ + A+ + G +    +V A+DI  +  +  V+        L +
Sbjct: 41  IKPGFKILDYGCGSGSYIRDASEMVGPSG---KVYALDINPVA-VEMVRHL-ASIKQLRN 95

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM-SLCEAATFFALEMLNIGGDFLVKT 183
            E I      + D  L   +  T+      H      L          +L   G      
Sbjct: 96  IETILS----DYDTGLPSGSLDTVLFYDTYHTLNKPELVMKELH---RVLKPEGTLSFSD 148

Query: 184 FQGGTTNDILCLLKK-HFQKVIHVK 207
            Q      +  + +K  F+     K
Sbjct: 149 HQMKEEEIMESITRKRLFKLKKRGK 173


>gi|73991499|ref|XP_534340.2| PREDICTED: similar to CG8067-PA [Canis familiaris]
          Length = 345

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 69/200 (34%), Gaps = 34/200 (17%)

Query: 2   VKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRH---INDPYVQRAQLEGWRARSAYKLLQI 58
           V PPGS+S R L   + +R  +   ++W  R    +   Y++     G          QI
Sbjct: 33  VSPPGSTSPRALN--IFDRDLKRKQKNWAARQPEPMRFDYLKE--EVG---------SQI 79

Query: 59  NEK-HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKF 117
            ++ + I ++    +D+G   G  +Q   +         +   +DI +          + 
Sbjct: 80  ADRVYDITRNFSLALDVGCGRGYIAQHLNK-----ETVGKFFQVDIAENAL---KNTLEM 131

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           +   +       + +    +    D+   ++    ++          A      +L   G
Sbjct: 132 EIPTVSVLAD-EEFLPFKENTF--DLVVSSLSLHWVND------LPRALEQIHYVLKPDG 182

Query: 178 DFLVKTFQGGTTNDILCLLK 197
            F+   F G T  ++ C L+
Sbjct: 183 VFIGAMFGGDTLYELRCSLQ 202


>gi|322490828|emb|CBZ26092.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1909

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 35  NDPYVQ-RAQLEGWRARSAYKLL--------QINEKHQILQSNRRIVDLGSSPGSWSQVA 85
            D +V+ RAQ E + AR+ +KLL        Q+ E+  +++  +R+     +    SQ+A
Sbjct: 530 TDSHVRERAQQEEYVARNVFKLLLMVEDCRVQVLERW-LVEKGKRV-----AFFYGSQLA 583

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138
           A +  + A +    A D    +P   V          D+   +R+ +     L
Sbjct: 584 ANLFDNAAVHQAAFAHDPSPCDP--SVVTISPTRTLADANRVLRETLQAYVRL 634


>gi|295111849|emb|CBL28599.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Synergistetes bacterium SGP1]
          Length = 263

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 12/163 (7%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           AR+   +++   ++  L      +D+G   G+ +   A+     +       ID+  +  
Sbjct: 80  ARA---IVEGVAQYVRLPDGGCGLDVGCGSGALTIACAKRNPEGSMT----GIDLWGITY 132

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
               K    D    +    +R   G    L   D ++  +      H       +     
Sbjct: 133 ASYNKKLCEDNALAEGVGNVRFLQGNAVKLDFPDESFDAVTSNYCYHNIVGVNRQDVLLE 192

Query: 169 ALEMLNIGGDFLVKTFQG----GTTNDILCLLKKH-FQKVIHV 206
            L +L  GG F +         G     +  L+   +Q+V  +
Sbjct: 193 TLRVLKKGGTFALHDLMSRARYGDMQAFVERLRGMGYQEVQII 235


>gi|167527334|ref|XP_001747999.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773417|gb|EDQ87056.1| predicted protein [Monosiga brevicollis MX1]
          Length = 420

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 12/60 (20%)

Query: 39  VQRAQLEGWR--ARSAYKLLQ------INEKHQILQSNRRI-VDLGSSPGSWSQVAARIT 89
                  GWR  +R+ YK+ +      ++++   ++    + +D+G+SPG WSQ  A   
Sbjct: 212 YNTGHPIGWRAVSRAYYKMDESLIRRPLDQR---MRDGPLVGLDVGASPGGWSQRMAEFC 268


>gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
 gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
          Length = 449

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNA-------NNTRVVAI-DILDMEPILGVKFFKF 117
           +    +VD+ ++PG  +Q  A +  +         +  R+  + DIL    +   + ++ 
Sbjct: 256 KPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRTGVRNARIYRE 315

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSD-----MAYPTIGHRKIDHLRTMS---LCEAATFFA 169
           D     + + + + I     L         +        ++   +      L        
Sbjct: 316 D--SRKAPDILGEEIADRVLLDAPCSSDGTIMKNPDLRWRLREEKISELQKLQYEMLEAG 373

Query: 170 LEMLNIGGDFL-VKTFQGGTTNDIL--CLLKKHFQ 201
            ++L  GG  L          N+ +    LK+H+ 
Sbjct: 374 WKLLKPGGKLLYCTCSMLLEENEYIIEKFLKQHYN 408


>gi|262199925|ref|YP_003271134.1| hemolysin A [Haliangium ochraceum DSM 14365]
 gi|262083272|gb|ACY19241.1| hemolysin A [Haliangium ochraceum DSM 14365]
          Length = 282

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 41  RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
           R++   + +R A KL++  +   I  +    +D+G+S G ++ V  R         RV A
Sbjct: 54  RSKDHPYVSRGALKLVEGLDTFAIDPAGLVALDIGASTGGFTDVLLRR-----GCRRVYA 108

Query: 101 IDI 103
           ID+
Sbjct: 109 IDV 111


>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 465

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 23/176 (13%)

Query: 67  SNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
               I+D  ++PG  +  +A+R+ G        V    L +      +    D +    +
Sbjct: 266 PGDTIIDCCAAPGGKALNLASRLNGQGKVVAVDVNEGRLRILSEAAEQQGVGDVVSPCHY 325

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEM 172
           +    A           +  P  G   +             D  +   L ++    A  +
Sbjct: 326 DLRDYAAKAAGTADRVLLDAPCSGLGVLSKRADLRWRRSPEDVKQLTELQDSLLDAAALL 385

Query: 173 LNIGGDFLVKTFQGGTTND------ILCLLKKH-FQKVIHVKPVASRAESVEMFLL 221
           +  GG  +  T    T+ +       L   +    + V    P +    S E F +
Sbjct: 386 VKPGGVLVYSTCSIETSENSERIAAFLSRNRDFVSENVEPFVPAS--MVSKEGFFV 439


>gi|316932025|ref|YP_004107007.1| type 11 methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315599739|gb|ADU42274.1| Methyltransferase type 11 [Rhodopseudomonas palustris DX-1]
          Length = 206

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
           L+   R +D+G  PG  +   AR  G++    RV A+DI D
Sbjct: 57  LRPGERAIDIGCGPGRVTIPLARAVGAHG---RVTALDIQD 94


>gi|256851169|ref|ZP_05556558.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660593|ref|ZP_05861508.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
           115-3-CHN]
 gi|256616231|gb|EEU21419.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548315|gb|EEX24290.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
           115-3-CHN]
          Length = 461

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 17/157 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD---FLDL 122
           +  ++++DL ++PG  S        +                    ++ +  D     + 
Sbjct: 97  KPGQKVLDLCAAPGGKSTALLSALKNKGLLVANEISTSRAKNLRENIERWGADNCLVTNE 156

Query: 123 DS----WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TFFALEM 172
           D+     +F R       D   S        H  + +     + E +         A++M
Sbjct: 157 DTSHLAQKFPRFFDAILVDAPCSGEGMFRKNHDAVTYWSQEYVLECSNRQKEILNEAVKM 216

Query: 173 LNIGGDFL--VKTFQGGTTNDILCLLKKH--FQKVIH 205
           L  GG  L    T+      +I   L     F+ V  
Sbjct: 217 LKPGGSLLYSTCTYAPEEDEEICAYLVNELGFKLVET 253


>gi|296129503|ref|YP_003636753.1| hemolysin A [Cellulomonas flavigena DSM 20109]
 gi|296021318|gb|ADG74554.1| hemolysin A [Cellulomonas flavigena DSM 20109]
          Length = 286

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 42  AQLEGWRARSAYKLLQINEKHQILQS---NRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           A   G+ +R+A+KL    + +         R  +D G+S G ++ V  R         RV
Sbjct: 61  ADDPGYASRAAHKLADALDAYGDAGPRVAGRVCLDAGASTGGFTDVLLRRGAE-----RV 115

Query: 99  VAIDI 103
           VA+D+
Sbjct: 116 VAVDV 120


>gi|300787880|ref|YP_003768171.1| hemolysin-like protein [Amycolatopsis mediterranei U32]
 gi|299797394|gb|ADJ47769.1| putative hemolysin-like protein [Amycolatopsis mediterranei U32]
          Length = 275

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 45  EGWRARSAYKLLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            GW +R A+KLL   E   ++    +R +D G+S G ++ V  R  G+       V   +
Sbjct: 60  PGWASRGAHKLLGALEAFTELTVEGKRCLDAGASTGGFTDVLLR-NGAATVIAADVGRGL 118

Query: 104 LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
           LD       +    D    +      + +GG  DL++ D++             ++ L  
Sbjct: 119 LDWRIRTDDRVVVMDRT--NVRNLTPEDLGGQVDLIVGDLS-----------FISLKLVL 165

Query: 164 AATFFALEMLNIGGDFLVKT 183
            A          G D +   
Sbjct: 166 PALAACA---REGADLVPMV 182


>gi|289621956|emb|CBI51134.1| unnamed protein product [Sordaria macrospora]
          Length = 382

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 23/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   +++D+G   G  ++  A+ T ++     +  ++  D +            +D  +
Sbjct: 129 IKKGMKVLDVGCGVGGPAREIAKFTDAH-----ITGLNNNDYQ------------IDRAT 171

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
              +R  + G    V  D    +      D +  +     A            +L  GG 
Sbjct: 172 HYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYRVLKPGGV 231

Query: 179 F 179
           F
Sbjct: 232 F 232


>gi|259487544|tpe|CBF86301.1| TPA: TAM domain methyltransferase, putative (AFU_orthologue;
           AFUA_2G15860) [Aspergillus nidulans FGSC A4]
          Length = 373

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 25/121 (20%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           +RI+D+G+  G+W+   A           ++  D+  ++P        F   D +     
Sbjct: 139 KRILDIGTGTGAWALEMAEQFPEAE----IIGTDLSPIQPSFSPPNCTFIIDDAE----- 189

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF----ALEMLNIGGDFLVKTF 184
                       SD A+         H R+M    A        A   L  GG   V+ F
Sbjct: 190 ------------SDWAFSKDEPFDYIHARSMGGGIADWDRLFRQAYNHLKPGGWLEVQEF 237

Query: 185 Q 185
           +
Sbjct: 238 E 238


>gi|238924345|ref|YP_002937861.1| NOL1/NOP2/sun family protein [Eubacterium rectale ATCC 33656]
 gi|238876020|gb|ACR75727.1| NOL1/NOP2/sun family protein [Eubacterium rectale ATCC 33656]
          Length = 462

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 28/156 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  S   A   G          N   +R+++ +I  M          
Sbjct: 105 KPGMRVLDLCAAPGGKSTQLATYLGDSGLLVSNEINTQRSRILSQNIERMG------IKN 158

Query: 117 FDFLDLDSWEFIRQAIGG----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------T 166
               + DS+       G       D   S           I+     ++   A       
Sbjct: 159 AIVTNEDSFVLASHFPGFFNAIQVDAPCSGEGMFRKLPEAIEQWSMENVAICAARQKEIL 218

Query: 167 FFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
             A  ML  GG  +       +    + I C L++H
Sbjct: 219 DNAAVMLKPGGTIVYSTCTFSREENEDVIECFLERH 254


>gi|67523419|ref|XP_659769.1| hypothetical protein AN2165.2 [Aspergillus nidulans FGSC A4]
 gi|40745053|gb|EAA64209.1| hypothetical protein AN2165.2 [Aspergillus nidulans FGSC A4]
          Length = 371

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 25/121 (20%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           +RI+D+G+  G+W+   A           ++  D+  ++P        F   D +     
Sbjct: 137 KRILDIGTGTGAWALEMAEQFPEAE----IIGTDLSPIQPSFSPPNCTFIIDDAE----- 187

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF----ALEMLNIGGDFLVKTF 184
                       SD A+         H R+M    A        A   L  GG   V+ F
Sbjct: 188 ------------SDWAFSKDEPFDYIHARSMGGGIADWDRLFRQAYNHLKPGGWLEVQEF 235

Query: 185 Q 185
           +
Sbjct: 236 E 236


>gi|291525122|emb|CBK90709.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium rectale
           DSM 17629]
          Length = 462

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 28/156 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  S   A   G          N   +R+++ +I  M          
Sbjct: 105 KPGMRVLDLCAAPGGKSTQLATYLGDSGLLVSNEINTQRSRILSQNIERMG------IKN 158

Query: 117 FDFLDLDSWEFIRQAIGG----NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------T 166
               + DS+       G       D   S           I+     ++   A       
Sbjct: 159 AIVTNEDSFVLASHFPGFFNAIQVDAPCSGEGMFRKLPEAIEQWSMENVAICAARQKEIL 218

Query: 167 FFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
             A  ML  GG  +       +    + I C L++H
Sbjct: 219 DNAAVMLKPGGTIVYSTCTFSREENEDVIECFLERH 254


>gi|262073972|gb|ACY09950.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAY-PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVK 182
               +G    L   D+         +I H +      M L       +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHSMKLQMLGGD-SLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073966|gb|ACY09947.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAY-PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVK 182
               +G    L   D+         +I H +      M L       +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHSMKLQMLGGD-SLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|262073963|gb|ACT35048.1| nonstructural polyprotein [Chikungunya virus]
          Length = 2474

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 129  RQAIGGNPDLVLSDMAY-PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVK 182
               +G    L   D+         +I H +      M L       +L +L  GG  L++
Sbjct: 1202 NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHSMKLQMLGGD-SLRLLKPGGSLLIR 1260

Query: 183  T--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
               +   T+  ++C+L + F+    +KP      + EMF L   F
Sbjct: 1261 AYGYADRTSERVICVLGRKFRSSRALKPPCV-TSNTEMFFLFSNF 1304


>gi|50954393|ref|YP_061681.1| hemolysin [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950875|gb|AAT88576.1| hemolysin [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 257

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R A+KLL   +   +  + R  +D G+S G +SQV             VVA+D+
Sbjct: 52  YVSRGAHKLLAALDAFGVPVAGRTALDAGASTGGFSQVLLER-----GAGTVVALDV 103


>gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           1_1_41FAA]
 gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
           1_1_41FAA]
          Length = 434

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 24/160 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           + N  ++D+ ++PG  + V A    +      +             +K    D +     
Sbjct: 239 KPNELVLDICAAPGGKTAVLAEEMENKGEIIAIDIHQHKKKLIEENMKKLGIDIVKATVL 298

Query: 126 EFIR-QAIGGNPDLVLSDMAYPTIGH-------------RKIDHLRTMSLCEAATFFALE 171
           +       G   D +L D+  P  G+              + +     SL       A +
Sbjct: 299 DARNVNKQGRKFDKILVDV--PCSGYGVIRKKPEILYTKNRENIEELASLQLEILNSAAD 356

Query: 172 MLNIGGDFL----VKTFQGGTTN--DILCLLKKHFQKVIH 205
           +L  GG+ +       FQ  T N    L   K+   KV  
Sbjct: 357 ILKDGGELIYSTCTIIFQENTENVEKFLNERKEF--KVKA 394


>gi|304315861|ref|YP_003851006.1| methyltransferase type 11 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777363|gb|ADL67922.1| Methyltransferase type 11 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 209

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 26/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV--------AIDILDMEPILGVKFFK 116
           L+    ++DLG   G+    AA+  G       +         A    +   I  V+F  
Sbjct: 33  LKEGENVLDLGCGRGNDILNAAKTIGEKGIAVGLDLTKRMIEKAEKNREKLNIKNVEFIV 92

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D  ++   +       G  D+V+SD        ++  +                +L  G
Sbjct: 93  GDVENIPLQD-------GKFDVVISDCVINHAKDKEKVYREIY-----------RVLKDG 134

Query: 177 GDFLV 181
           G F+V
Sbjct: 135 GRFVV 139


>gi|219126364|ref|XP_002183429.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405185|gb|EEC45129.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 263

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 31/133 (23%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------MEP 108
           LL++ +    +   +RI+D+G   G  +Q  + +    A N  V  +D          + 
Sbjct: 35  LLELIQ----VSDGQRILDVGCGSGELTQALSHL----AKNLVVTGMDADPDMVAKARQQ 86

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
                FF+ D  + +  E          D++ S+ A   I  +             A   
Sbjct: 87  FPSCDFFQGDMRNFEVPE--------PVDVLFSNAALHWIPAKDAG---------RAVAC 129

Query: 169 ALEMLNIGGDFLV 181
             + L  GG  +V
Sbjct: 130 MAKALRPGGQLVV 142


>gi|116747715|ref|YP_844402.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116696779|gb|ABK15967.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
          Length = 279

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 26/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+    ++DLGS  G    +AA   G +    RV+ +D+                 ++ +
Sbjct: 77  LREGETVLDLGSGAGFDCFLAAAKVGPSG---RVIGVDMTP---------------EMIA 118

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--------ALEMLNIG 176
                   GG  +          +          +S C              A  +L  G
Sbjct: 119 KAQENALKGGYANTEFRFGEIENLPVEDSSVDVIVSNCVINLSPDKPKVFKEAFRVLKPG 178

Query: 177 GDFLV 181
           G F+V
Sbjct: 179 GRFIV 183


>gi|239916588|ref|YP_002956146.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Micrococcus luteus NCTC 2665]
 gi|281414946|ref|ZP_06246688.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Micrococcus luteus NCTC 2665]
 gi|239837795|gb|ACS29592.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Micrococcus luteus NCTC 2665]
          Length = 200

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 22/125 (17%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF--I 128
           ++D+G  PG W+         N    +V  ID +             +F+D     F  +
Sbjct: 46  VLDVGCGPGHWASFL------NQTGVKVTGIDPVP------------EFIDDARARFPDV 87

Query: 129 RQAIGGNPDLVLSDMAYPTIGHR-KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG 187
              +G    L + D +   I     + H     L      FA  +L  GG  LV  F G 
Sbjct: 88  AFRVGRAEALDVYDASVGGILAWYSLIHTDPSQLTAVFGEFA-RVLRPGGSILVGFFAGV 146

Query: 188 TTNDI 192
                
Sbjct: 147 DLTRF 151


>gi|327538953|gb|EGF25591.1| UbiE/COQ5 methyltransferase [Rhodopirellula baltica WH47]
          Length = 275

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
             R++DLG  P   + +         +   +      + +  +    F  D L+L S+E 
Sbjct: 67  GPRVIDLGCGPAGIALMLGERWRELEDAGGLSQSSFAEGQLQIMAVDFSVDMLELASFEI 126

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE-------AATFFALEMLNIGG-DF 179
               +     L   D+  P      +      +               A+  L  GG  F
Sbjct: 127 ELNGMQDLVWLQQIDLTDPESLQEDLAQTIISNTVLHHLPDPITGIQVAMRALMPGGRIF 186

Query: 180 LVKTFQGGTTNDILCLLKKH 199
           +   F+ G+ +++  L+K+H
Sbjct: 187 IRDLFRPGSKDEVERLVKEH 206


>gi|284447373|gb|ADB88761.1| RNA polymerase [Durham virus]
          Length = 2084

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 118  DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D     +WE+ ++    +   +  D+    + +R     +  SL E        +L +GG
Sbjct: 1730 DLTKFQTWEYFKKLRAQHK--LQLDLMIFDMENRDDQSSQIESLLEQNLH---GLLELGG 1784

Query: 178  DFLVKTF----QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              + K++      G   +   +L +HF+KV+  +   +   S E +++    
Sbjct: 1785 TLIFKSYGARLLAGGQKNPTLILGRHFEKVLICQTSFTSNFSSECYIVCLNL 1836


>gi|289615578|emb|CBI57624.1| unnamed protein product [Sordaria macrospora]
          Length = 292

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 20/120 (16%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSW 125
            +I+DLG   G W+   A          +VV +D+  ++P+     V+++  D  D +  
Sbjct: 120 NKILDLGCGTGKWTVEVADKF----QFAKVVGVDLSPIQPVMSPENVEWWIDDVEDEE-- 173

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E   +  G + D V +    P +                      + L  GG    + F 
Sbjct: 174 ENFFETEGYDYDFVHARYLLPMVVDPA-----------GIIRKCFDHLKPGGWIETQDFH 222


>gi|254471298|ref|ZP_05084700.1| arsenite methyltransferase [Pseudovibrio sp. JE062]
 gi|211959444|gb|EEA94642.1| arsenite methyltransferase [Pseudovibrio sp. JE062]
          Length = 277

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD 121
              ++    ++DLGS  G    +AA  TG +    +V+ ID+ + + I   +        
Sbjct: 61  FSQIKEGETVLDLGSGAGLDLILAAEKTGPSG---KVIGIDVSE-DMIAQART------- 109

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL--EMLNIGGDF 179
            +  ++  Q I  +  ++       +     I +       + A  FA    +L  GG  
Sbjct: 110 -NCDKYGLQNIELHQGVIEDLPFPDSSIDWIISNCVINLSADKAAVFAEVYRVLKPGGHL 168

Query: 180 LV 181
           ++
Sbjct: 169 MI 170


>gi|146323517|ref|XP_754131.2| TAM domain methyltransferase [Aspergillus fumigatus Af293]
 gi|129558251|gb|EAL92093.2| TAM domain methyltransferase, putative [Aspergillus fumigatus
           Af293]
          Length = 336

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 25/119 (21%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFL 120
           I +   RI+DLG+  G W+              +V+  D+  ++P      + F   DF 
Sbjct: 98  IPRDVSRILDLGTGTGIWAIE----MADEFPTAKVIGNDLSPIQPTWVPPNLSFEVDDFE 153

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
               +      I         D+      + ++               A   L  GG F
Sbjct: 154 SDWEYSKPFDFIHAR------DLQGSVSDYNRLVAQ------------AFANLAPGGWF 194


>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 444

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 36/185 (19%)

Query: 53  YK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           YK  L+ I ++  +L       +    ++D+ ++PG  +   A++  ++     V+A D+
Sbjct: 225 YKEGLIYIQDEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGE---VIAFDL 281

Query: 104 LD-----MEP------ILGVKFFKFD--FLDLDSWEFIRQAIGGNPD--LVLSDMAYPTI 148
                  ++       I  VK   FD  F++    E   + +   P   + +        
Sbjct: 282 HPHRLELIKENCKRLGITNVKTEVFDSTFVNEKYLEKADKVLADVPCTGIGIIRKKPDIK 341

Query: 149 GHRKIDHLRTMSLCEAA---TFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--F 200
                    +  L EA       + + +  GG  +       +    N I+  LK+H  F
Sbjct: 342 LKNYTRKEIS-ELIEAQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDF 400

Query: 201 QKVIH 205
           + V  
Sbjct: 401 KLVDI 405


>gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 444

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 36/185 (19%)

Query: 53  YK--LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           YK  L+ I ++  +L       +    ++D+ ++PG  +   A++  ++     V+A D+
Sbjct: 225 YKEGLIYIQDEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGE---VIAFDL 281

Query: 104 LD-----MEP------ILGVKFFKFD--FLDLDSWEFIRQAIGGNPD--LVLSDMAYPTI 148
                  ++       I  VK   FD  F++    E   + +   P   + +        
Sbjct: 282 HPHRLELIKENCKRLGITNVKTEVFDSTFVNEKYLEKADKVLADVPCTGIGIIRKKPDIK 341

Query: 149 GHRKIDHLRTMSLCEAA---TFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH--F 200
                    +  L EA       + + +  GG  +       +    N I+  LK+H  F
Sbjct: 342 LKNYTRKEIS-ELIEAQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDF 400

Query: 201 QKVIH 205
           + V  
Sbjct: 401 KLVDI 405


>gi|45378910|gb|AAS59401.1| polyprotein precursor [Usutu virus]
          Length = 3434

 Score = 37.6 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 6    GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYV-------QRAQLEGWR------ARSA 52
            G    R L ++ K +    S  D+L ++  +          ++A+ +G +      +R +
Sbjct: 2530 GRPGGRTLGEQWKEKLNGLSREDFL-KYRKEAITEVDRSAARKARRDGNKTGGHPVSRGS 2588

Query: 53   YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
             KL  + E+ Q ++   ++VDLG   G WS  AA + G      
Sbjct: 2589 AKLRWMVER-QFVKPIGKVVDLGCGRGGWSYYAATLKGVQEVRG 2631


>gi|319957378|ref|YP_004168641.1| hemolysin a [Nitratifractor salsuginis DSM 16511]
 gi|319419782|gb|ADV46892.1| hemolysin A [Nitratifractor salsuginis DSM 16511]
          Length = 239

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD- 105
           + +RSA KL    ++H +    +R +D+GSS G ++QV      +  +   V    +   
Sbjct: 57  YVSRSAQKLAGYLQEHPLETEGKRCLDIGSSTGGFTQVLLEKGAAGVDAVDVGRDQLHPS 116

Query: 106 MEPILGVKFF-KFDFLDLD 123
           +     V+ + + D  D D
Sbjct: 117 LRADPRVRSYEQTDIRDFD 135


>gi|297565097|ref|YP_003684069.1| trans-aconitate 2-methyltransferase [Meiothermus silvanus DSM 9946]
 gi|296849546|gb|ADH62561.1| Trans-aconitate 2-methyltransferase [Meiothermus silvanus DSM 9946]
          Length = 253

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 24/121 (19%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDL 122
           +   R +DLG   G  ++  A     +       +  +L    +    G++F + D  + 
Sbjct: 29  KPGVRAIDLGCGTGELTRKLADTLPDSEVTGLDSSASMLARSGLHVRPGLRFIQGDIAE- 87

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
                    + G+ DL+ S+ A   +        +               LN GG  +V+
Sbjct: 88  ---------LKGSYDLIFSNAALQWLPDHWRLFPKLW-----------RHLNPGGQLVVQ 127

Query: 183 T 183
            
Sbjct: 128 M 128


>gi|78044795|ref|YP_359413.1| UbiE/COQ5 family methlytransferase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996910|gb|ABB15809.1| methyltransferase, UbiE/COQ5 family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 204

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 25/124 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-------EPILGVKFFKF 117
           L+    ++DLG   G  +  AA+I          +   +L+        + +  V F K 
Sbjct: 28  LKPGMIVLDLGCGNGGETIRAAQIVAPGFAVGLDITEKLLEKGQKKAREQGVKNVVFIKG 87

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           +             +G + D+V+S+ A      + +   R +            +L   G
Sbjct: 88  EI-------ENLPFVGESFDVVISNCALNHARDK-LKVYREIY----------RVLKEDG 129

Query: 178 DFLV 181
            F+V
Sbjct: 130 YFIV 133


>gi|332999900|gb|EGK19483.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           K-218]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|332091937|gb|EGI97015.1| SAM-dependent methyltransferase-like protein [Shigella boydii
           3594-74]
          Length = 361

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 179 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 231

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 232 YSVDNGPM 239


>gi|332087527|gb|EGI92655.1| SAM-dependent methyltransferase-like protein [Shigella boydii
           5216-82]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|324016337|gb|EGB85556.1| hypothetical protein HMPREF9542_05055 [Escherichia coli MS 117-3]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|323188775|gb|EFZ74060.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           RN587/1]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|323172889|gb|EFZ58520.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           LT-68]
          Length = 361

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 179 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 231

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 232 YSVDNGPM 239


>gi|320202453|gb|EFW77023.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli
           EC4100B]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|313647871|gb|EFS12317.1| SAM-dependent methyltransferase-like protein [Shigella flexneri 2a
           str. 2457T]
 gi|332753664|gb|EGJ84043.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           K-671]
 gi|332765763|gb|EGJ95976.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71]
          Length = 361

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 179 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 231

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 232 YSVDNGPM 239


>gi|312964922|ref|ZP_07779162.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           2362-75]
 gi|312290478|gb|EFR18358.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           2362-75]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|331664368|ref|ZP_08365274.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA143]
 gi|331058299|gb|EGI30280.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA143]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|300815773|ref|ZP_07095997.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300531702|gb|EFK52764.1| conserved hypothetical protein [Escherichia coli MS 107-1]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|300936274|ref|ZP_07151207.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300458599|gb|EFK22092.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|301027523|ref|ZP_07190860.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300395031|gb|EFJ78569.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|301026227|ref|ZP_07189691.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299879776|gb|EFI87987.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|323154853|gb|EFZ41046.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           EPECa14]
 gi|332089118|gb|EGI94228.1| SAM-dependent methyltransferase-like protein [Shigella dysenteriae
           155-74]
          Length = 361

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 179 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 231

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 232 YSVDNGPM 239


>gi|297518720|ref|ZP_06937106.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli OP50]
          Length = 312

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|291284135|ref|YP_003500953.1| putative RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764008|gb|ADD57969.1| Putative RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli
           O55:H7 str. CB9615]
          Length = 332

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 150 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 202

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 203 YSVDNGPM 210


>gi|281179807|dbj|BAI56137.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|260869484|ref|YP_003235886.1| rRNA large subunit methyltransferase M [Escherichia coli O111:H-
           str. 11128]
 gi|257765840|dbj|BAI37335.1| rRNA large subunit methyltransferase M [Escherichia coli O111:H-
           str. 11128]
 gi|323180239|gb|EFZ65791.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           1180]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|303311907|ref|XP_003065965.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105627|gb|EER23820.1| methyltransferase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039920|gb|EFW21854.1| UMTA [Coccidioides posadasii str. Silveira]
          Length = 335

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 24/114 (21%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           +R++DLG+  G W+   A    S A    V+A D+  ++P      ++F   DF +  ++
Sbjct: 97  QRVLDLGTGTGIWAMDFADEFPSAA----VIATDVSAIQPTLVPPNLEFQIDDFCEPWTF 152

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                    +   +       +  +  +               AL+ L  GG F
Sbjct: 153 RK-ESFDYIHARCIYGC----SSDYPALYQE------------ALDHLKPGGWF 189


>gi|209761234|gb|ACI78929.1| hypothetical protein ECs3666 [Escherichia coli]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|218547682|ref|YP_002381473.1| RNA 2'-O-ribose methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|226705362|sp|B7LVW4|RLMM_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|218355223|emb|CAQ87830.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|324111206|gb|EGC05189.1| hypothetical protein ERIG_04149 [Escherichia fergusonii B253]
 gi|325496158|gb|EGC94017.1| RNA 2'-O-ribose methyltransferase [Escherichia fergusonii ECD227]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|170765598|ref|ZP_02900409.1| conserved hypothetical protein [Escherichia albertii TW07627]
 gi|170124744|gb|EDS93675.1| conserved hypothetical protein [Escherichia albertii TW07627]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|91212175|ref|YP_542161.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli UTI89]
 gi|117625034|ref|YP_854022.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli APEC
           O1]
 gi|218559794|ref|YP_002392707.1| RNA 2'-O-ribose methyltransferase [Escherichia coli S88]
 gi|237706562|ref|ZP_04537043.1| methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|122422638|sp|Q1R7N4|RLMM_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|166199436|sp|A1AEZ3|RLMM_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705353|sp|B7MLC7|RLMM_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|91073749|gb|ABE08630.1| hypothetical protein YgdE [Escherichia coli UTI89]
 gi|115514158|gb|ABJ02233.1| methyltransferase [Escherichia coli APEC O1]
 gi|218366563|emb|CAR04316.1| putative methyltransferase [Escherichia coli S88]
 gi|226899602|gb|EEH85861.1| methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|294491159|gb|ADE89915.1| conserved hypothetical protein [Escherichia coli IHE3034]
 gi|307625624|gb|ADN69928.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli UM146]
 gi|315289339|gb|EFU48734.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323950977|gb|EGB46853.1| ygdE protein [Escherichia coli H252]
 gi|323957181|gb|EGB52905.1| ygdE protein [Escherichia coli H263]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|119193638|ref|XP_001247425.1| hypothetical protein CIMG_01196 [Coccidioides immitis RS]
          Length = 335

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 24/114 (21%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDSW 125
           +R++DLG+  G W+   A    S A    V+A D+  ++P      ++F   DF +  ++
Sbjct: 97  QRVLDLGTGTGIWAMDFADEFPSAA----VIATDVSAIQPTLVPPNLEFQIDDFCEPWTF 152

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                    +   +       +  +  +               AL+ L  GG F
Sbjct: 153 RK-ESFDYIHARCIYGC----SSDYPALYQE------------ALDHLKPGGWF 189


>gi|82545104|ref|YP_409051.1| RNA 2'-O-ribose methyltransferase [Shigella boydii Sb227]
 gi|123558916|sp|Q31XI5|RLMM_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|81246515|gb|ABB67223.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320185276|gb|EFW60051.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Shigella flexneri
           CDC 796-83]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|82778185|ref|YP_404534.1| putative RNA 2'-O-ribose methyltransferase [Shigella dysenteriae
           Sd197]
 gi|309785118|ref|ZP_07679749.1| SAM-dependent methyltransferase-like protein [Shigella dysenteriae
           1617]
 gi|123561734|sp|Q32CB2|RLMM_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|81242333|gb|ABB63043.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308926238|gb|EFP71714.1| SAM-dependent methyltransferase-like protein [Shigella dysenteriae
           1617]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|74313377|ref|YP_311796.1| putative RNA 2'-O-ribose methyltransferase [Shigella sonnei Ss046]
 gi|84029357|sp|Q3YY51|RLMM_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|73856854|gb|AAZ89561.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323167854|gb|EFZ53545.1| SAM-dependent methyltransferase-like protein [Shigella sonnei 53G]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|15803328|ref|NP_289361.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|25366978|pir||D85932 hypothetical protein ygdE [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517285|gb|AAG57920.1|AE005508_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|26249211|ref|NP_755251.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           CFT073]
 gi|215488123|ref|YP_002330554.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218690929|ref|YP_002399141.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli ED1a]
 gi|227888348|ref|ZP_04006153.1| RNA 2'-O-ribose methyltransferase [Escherichia coli 83972]
 gi|300979398|ref|ZP_07174542.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|301049429|ref|ZP_07196390.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|306812313|ref|ZP_07446511.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli NC101]
 gi|331648535|ref|ZP_08349623.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           M605]
 gi|81474881|sp|Q8FEE5|RLMM_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|254809563|sp|B7UHM2|RLMM_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|254809565|sp|B7MYV7|RLMM_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|26109618|gb|AAN81821.1|AE016765_223 Hypothetical protein ygdE [Escherichia coli CFT073]
 gi|215266195|emb|CAS10621.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218428493|emb|CAR09274.1| putative methyltransferase [Escherichia coli ED1a]
 gi|222034497|emb|CAP77239.1| RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli LF82]
 gi|227834617|gb|EEJ45083.1| RNA 2'-O-ribose methyltransferase [Escherichia coli 83972]
 gi|300298779|gb|EFJ55164.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300409498|gb|EFJ93036.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|305854351|gb|EFM54789.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli NC101]
 gi|307554778|gb|ADN47553.1| SAM-dependent methyltransferase [Escherichia coli ABU 83972]
 gi|312947334|gb|ADR28161.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315293762|gb|EFU53114.1| conserved hypothetical protein [Escherichia coli MS 153-1]
 gi|315298836|gb|EFU58090.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|320194948|gb|EFW69577.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli
           WV_060327]
 gi|324005612|gb|EGB74831.1| hypothetical protein HMPREF9532_04719 [Escherichia coli MS 57-2]
 gi|330908836|gb|EGH37350.1| putative RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli
           AA86]
 gi|331042282|gb|EGI14424.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           M605]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|110642947|ref|YP_670677.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli 536]
 gi|191171173|ref|ZP_03032723.1| conserved hypothetical protein [Escherichia coli F11]
 gi|300976442|ref|ZP_07173427.1| hypothetical protein HMPREF9553_00828 [Escherichia coli MS 200-1]
 gi|122958074|sp|Q0TE53|RLMM_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|110344539|gb|ABG70776.1| hypothetical protein YgdE [Escherichia coli 536]
 gi|190908473|gb|EDV68062.1| conserved hypothetical protein [Escherichia coli F11]
 gi|300308523|gb|EFJ63043.1| hypothetical protein HMPREF9553_00828 [Escherichia coli MS 200-1]
 gi|324015371|gb|EGB84590.1| hypothetical protein HMPREF9533_00554 [Escherichia coli MS 60-1]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|193071115|ref|ZP_03052040.1| conserved hypothetical protein [Escherichia coli E110019]
 gi|192955576|gb|EDV86054.1| conserved hypothetical protein [Escherichia coli E110019]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|24114090|ref|NP_708600.1| putative RNA 2'-O-ribose methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|30064151|ref|NP_838322.1| putative RNA 2'-O-ribose methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|110806746|ref|YP_690266.1| putative RNA 2'-O-ribose methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|187731283|ref|YP_001881455.1| putative RNA 2'-O-ribose methyltransferase [Shigella boydii CDC
           3083-94]
 gi|81723085|sp|Q83JW6|RLMM_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|123047949|sp|Q0T154|RLMM_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705376|sp|B2TZC9|RLMM_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|24053220|gb|AAN44307.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042407|gb|AAP18132.1| hypothetical protein S3015 [Shigella flexneri 2a str. 2457T]
 gi|110616294|gb|ABF04961.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|187428275|gb|ACD07549.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
 gi|281602166|gb|ADA75150.1| putative RNA 2'-O-ribose methyltransferase mtfA [Shigella flexneri
           2002017]
 gi|320172922|gb|EFW48152.1| putative RNA 2'-O-ribose methyltransferase mtfA [Shigella
           dysenteriae CDC 74-1112]
 gi|332753527|gb|EGJ83907.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           4343-70]
 gi|332754608|gb|EGJ84974.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           2747-71]
 gi|332999563|gb|EGK19148.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           VA-6]
 gi|333000951|gb|EGK20521.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           K-272]
 gi|333015062|gb|EGK34405.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           K-304]
 gi|333015547|gb|EGK34886.1| SAM-dependent methyltransferase-like protein [Shigella flexneri
           K-227]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|15832920|ref|NP_311693.1| RNA 2'-O-ribose methyltransferase [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130713|ref|NP_417286.1| 23S rRNA C2498 ribose 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109592|ref|AP_003372.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|157157061|ref|YP_001464130.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           E24377A]
 gi|157162260|ref|YP_001459578.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli HS]
 gi|168751023|ref|ZP_02776045.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758191|ref|ZP_02783198.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764526|ref|ZP_02789533.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766779|ref|ZP_02791786.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777568|ref|ZP_02802575.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778800|ref|ZP_02803807.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788070|ref|ZP_02813077.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168801670|ref|ZP_02826677.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170018948|ref|YP_001723902.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli ATCC
           8739]
 gi|170082377|ref|YP_001731697.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680808|ref|YP_001744971.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           SMS-3-5]
 gi|188493142|ref|ZP_03000412.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|191168557|ref|ZP_03030342.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|193065091|ref|ZP_03046165.1| conserved hypothetical protein [Escherichia coli E22]
 gi|194426401|ref|ZP_03058956.1| conserved hypothetical protein [Escherichia coli B171]
 gi|194434691|ref|ZP_03066945.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194439646|ref|ZP_03071717.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|195936410|ref|ZP_03081792.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806845|ref|ZP_03249182.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813999|ref|ZP_03255328.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820825|ref|ZP_03261145.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398340|ref|YP_002272272.1| hypothetical protein ECH74115_4070 [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920257|ref|YP_002294341.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli SE11]
 gi|217326958|ref|ZP_03443041.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555357|ref|YP_002388270.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli IAI1]
 gi|218696405|ref|YP_002404072.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli 55989]
 gi|218701523|ref|YP_002409152.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli IAI39]
 gi|218706302|ref|YP_002413821.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           UMN026]
 gi|238901944|ref|YP_002927740.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772337|ref|YP_003035168.1| RNA 2'-O-ribose methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037860|ref|ZP_04871918.1| methyltransferase [Escherichia sp. 1_1_43]
 gi|254162737|ref|YP_003045845.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli B str.
           REL606]
 gi|254794747|ref|YP_003079584.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019405|ref|ZP_05433270.1| putative RNA 2'-O-ribose methyltransferase [Shigella sp. D9]
 gi|256024690|ref|ZP_05438555.1| putative RNA 2'-O-ribose methyltransferase [Escherichia sp.
           4_1_40B]
 gi|260845452|ref|YP_003223230.1| rRNA large subunit methyltransferase M [Escherichia coli O103:H2
           str. 12009]
 gi|260856916|ref|YP_003230807.1| rRNA large subunit methyltransferase M [Escherichia coli O26:H11
           str. 11368]
 gi|261226107|ref|ZP_05940388.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256638|ref|ZP_05949171.1| rRNA large subunit methyltransferase M [Escherichia coli O157:H7
           str. FRIK966]
 gi|293406298|ref|ZP_06650224.1| RNA 2'-O-ribose methyltransferase [Escherichia coli FVEC1412]
 gi|293412154|ref|ZP_06654877.1| RNA 2'-O-ribose methyltransferase [Escherichia coli B354]
 gi|293416053|ref|ZP_06658693.1| RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli B185]
 gi|293449132|ref|ZP_06663553.1| RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli B088]
 gi|298382034|ref|ZP_06991631.1| RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli FVEC1302]
 gi|300820597|ref|ZP_07100748.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|300898130|ref|ZP_07116496.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300906664|ref|ZP_07124353.1| hypothetical protein HMPREF9536_04628 [Escherichia coli MS 84-1]
 gi|300920336|ref|ZP_07136774.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923214|ref|ZP_07139269.1| hypothetical protein HMPREF9548_01424 [Escherichia coli MS 182-1]
 gi|300931272|ref|ZP_07146612.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300950542|ref|ZP_07164449.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958126|ref|ZP_07170284.1| hypothetical protein HMPREF9547_03843 [Escherichia coli MS 175-1]
 gi|301304578|ref|ZP_07210688.1| hypothetical protein HMPREF9347_03184 [Escherichia coli MS 124-1]
 gi|301325756|ref|ZP_07219208.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|301645224|ref|ZP_07245177.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|307139493|ref|ZP_07498849.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli H736]
 gi|307312765|ref|ZP_07592395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Escherichia coli W]
 gi|309795277|ref|ZP_07689696.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|312972974|ref|ZP_07787147.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           1827-70]
 gi|331643493|ref|ZP_08344624.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           H736]
 gi|331654291|ref|ZP_08355291.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           M718]
 gi|331658921|ref|ZP_08359863.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA206]
 gi|331669541|ref|ZP_08370387.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA271]
 gi|331674297|ref|ZP_08375057.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA280]
 gi|331678787|ref|ZP_08379461.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           H591]
 gi|331684429|ref|ZP_08385021.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           H299]
 gi|332280523|ref|ZP_08392936.1| conserved hypothetical protein [Shigella sp. D9]
 gi|83287983|sp|P0ADR7|RLMM_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|83287984|sp|P0ADR6|RLMM_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|171855165|sp|A7ZQQ1|RLMM_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|172044358|sp|A8A3U1|RLMM_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|189040347|sp|B1IU35|RLMM_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705354|sp|B5Z4C6|RLMM_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705355|sp|B7NVV4|RLMM_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705356|sp|B7LXM2|RLMM_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705357|sp|B1XDL5|RLMM_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705358|sp|B7N740|RLMM_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705359|sp|B6I6K4|RLMM_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|226705360|sp|B1LR00|RLMM_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|254809564|sp|B7LEY3|RLMM_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|259494574|sp|C4ZZW1|RLMM_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|269969528|sp|C6USC2|RLMM_ECO5T RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|269969529|sp|C5W8B2|RLMM_ECOBB RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|269969530|sp|C6UCT5|RLMM_ECOBR RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|312768|emb|CAA51815.1| unnamed protein product [Escherichia coli]
 gi|882701|gb|AAB40456.1| alternate name Orf2 of X73413 and U01030; ORF_f366 [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1789171|gb|AAC75848.1| 23S rRNA C2498 ribose 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13363138|dbj|BAB37089.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|85675625|dbj|BAE76878.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|157067940|gb|ABV07195.1| conserved hypothetical protein [Escherichia coli HS]
 gi|157079091|gb|ABV18799.1| conserved hypothetical protein [Escherichia coli E24377A]
 gi|169753876|gb|ACA76575.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
 gi|169890212|gb|ACB03919.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170518526|gb|ACB16704.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
 gi|187767215|gb|EDU31059.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014892|gb|EDU53014.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188488341|gb|EDU63444.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|189003629|gb|EDU72615.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354932|gb|EDU73351.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363790|gb|EDU82209.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365502|gb|EDU83918.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372133|gb|EDU90549.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189376200|gb|EDU94616.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190901404|gb|EDV61168.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|192927222|gb|EDV81842.1| conserved hypothetical protein [Escherichia coli E22]
 gi|194415709|gb|EDX31976.1| conserved hypothetical protein [Escherichia coli B171]
 gi|194417088|gb|EDX33203.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194421393|gb|EDX37409.1| conserved hypothetical protein [Escherichia coli 101-1]
 gi|208726646|gb|EDZ76247.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735276|gb|EDZ83963.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740948|gb|EDZ88630.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159740|gb|ACI37173.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761228|gb|ACI78926.1| hypothetical protein ECs3666 [Escherichia coli]
 gi|209761230|gb|ACI78927.1| hypothetical protein ECs3666 [Escherichia coli]
 gi|209761232|gb|ACI78928.1| hypothetical protein ECs3666 [Escherichia coli]
 gi|209761236|gb|ACI78930.1| hypothetical protein ECs3666 [Escherichia coli]
 gi|209913516|dbj|BAG78590.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217319325|gb|EEC27750.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353137|emb|CAU98984.1| putative methyltransferase [Escherichia coli 55989]
 gi|218362125|emb|CAQ99734.1| putative methyltransferase [Escherichia coli IAI1]
 gi|218371509|emb|CAR19347.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218433399|emb|CAR14301.1| putative methyltransferase [Escherichia coli UMN026]
 gi|226839484|gb|EEH71505.1| methyltransferase [Escherichia sp. 1_1_43]
 gi|238862665|gb|ACR64663.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378358|emb|CAQ33135.1| 23S rRNA 2'-O-ribose C2498 methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|253323381|gb|ACT27983.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974638|gb|ACT40309.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978803|gb|ACT44473.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|254594147|gb|ACT73508.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755565|dbj|BAI27067.1| rRNA large subunit methyltransferase M [Escherichia coli O26:H11
           str. 11368]
 gi|257760599|dbj|BAI32096.1| rRNA large subunit methyltransferase M [Escherichia coli O103:H2
           str. 12009]
 gi|260448143|gb|ACX38565.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|284922745|emb|CBG35833.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli 042]
 gi|291322222|gb|EFE61651.1| RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli B088]
 gi|291426304|gb|EFE99336.1| RNA 2'-O-ribose methyltransferase [Escherichia coli FVEC1412]
 gi|291432242|gb|EFF05224.1| RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli B185]
 gi|291468925|gb|EFF11416.1| RNA 2'-O-ribose methyltransferase [Escherichia coli B354]
 gi|298277174|gb|EFI18690.1| RNA 2'-O-ribose methyltransferase ygdE [Escherichia coli FVEC1302]
 gi|300315192|gb|EFJ64976.1| hypothetical protein HMPREF9547_03843 [Escherichia coli MS 175-1]
 gi|300358188|gb|EFJ74058.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300401565|gb|EFJ85103.1| hypothetical protein HMPREF9536_04628 [Escherichia coli MS 84-1]
 gi|300412661|gb|EFJ95971.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420523|gb|EFK03834.1| hypothetical protein HMPREF9548_01424 [Escherichia coli MS 182-1]
 gi|300450110|gb|EFK13730.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300460926|gb|EFK24419.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300526861|gb|EFK47930.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|300840182|gb|EFK67942.1| hypothetical protein HMPREF9347_03184 [Escherichia coli MS 124-1]
 gi|300847455|gb|EFK75215.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|301076494|gb|EFK91300.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|306907200|gb|EFN37706.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Escherichia coli W]
 gi|308121248|gb|EFO58510.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|309703164|emb|CBJ02498.1| putative RNA 2'-O-ribose methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310332916|gb|EFQ00130.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           1827-70]
 gi|315062087|gb|ADT76414.1| predicted methyltransferase [Escherichia coli W]
 gi|315137413|dbj|BAJ44572.1| RNA 2'-O-ribose methyltransferase [Escherichia coli DH1]
 gi|315256669|gb|EFU36637.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           MS 85-1]
 gi|315615194|gb|EFU95831.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           3431]
 gi|320189142|gb|EFW63801.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640456|gb|EFX09995.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Escherichia coli O157:H7 str. G5101]
 gi|320645702|gb|EFX14687.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Escherichia coli O157:H- str. 493-89]
 gi|320651002|gb|EFX19442.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Escherichia coli O157:H- str. H 2687]
 gi|320656498|gb|EFX24394.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662394|gb|EFX29791.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667092|gb|EFX34055.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|323159877|gb|EFZ45847.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           E128010]
 gi|323183348|gb|EFZ68745.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           1357]
 gi|323377330|gb|ADX49598.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Escherichia coli KO11]
 gi|323935832|gb|EGB32135.1| hypothetical protein ERCG_02951 [Escherichia coli E1520]
 gi|323941512|gb|EGB37694.1| hypothetical protein ERDG_01880 [Escherichia coli E482]
 gi|323946466|gb|EGB42492.1| hypothetical protein EREG_01948 [Escherichia coli H120]
 gi|323960672|gb|EGB56296.1| hypothetical protein ERGG_02818 [Escherichia coli H489]
 gi|323966784|gb|EGB62215.1| hypothetical protein ERJG_01891 [Escherichia coli M863]
 gi|323971588|gb|EGB66819.1| hypothetical protein ERHG_02371 [Escherichia coli TA007]
 gi|323978583|gb|EGB73665.1| hypothetical protein ERFG_00512 [Escherichia coli TW10509]
 gi|324119848|gb|EGC13727.1| hypothetical protein ERBG_00186 [Escherichia coli E1167]
 gi|326339119|gb|EGD62934.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli
           O157:H7 str. 1044]
 gi|326342999|gb|EGD66767.1| Putative RNA 2'-O-ribose methyltransferase mtfA [Escherichia coli
           O157:H7 str. 1125]
 gi|327251547|gb|EGE63233.1| SAM-dependent methyltransferase-like protein [Escherichia coli
           STEC_7v]
 gi|331036964|gb|EGI09188.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           H736]
 gi|331047673|gb|EGI19750.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           M718]
 gi|331053503|gb|EGI25532.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA206]
 gi|331063209|gb|EGI35122.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA271]
 gi|331068391|gb|EGI39786.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           TA280]
 gi|331073617|gb|EGI44938.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           H591]
 gi|331078044|gb|EGI49250.1| putative RNA 2'-O-ribose methyltransferase YgdE [Escherichia coli
           H299]
 gi|332102875|gb|EGJ06221.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332344699|gb|AEE58033.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R          V
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMW-------V 236

Query: 99  VAIDILDM 106
            ++D   M
Sbjct: 237 YSVDNGPM 244


>gi|300743715|ref|ZP_07072735.1| SAM-dependent methyltransferase [Rothia dentocariosa M567]
 gi|300380076|gb|EFJ76639.1| SAM-dependent methyltransferase [Rothia dentocariosa M567]
          Length = 216

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 34/183 (18%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKH---------QILQSNRRIVDLGSSPG 79
           WL +  NDP    A  + +  R  +K ++   K           +     +I+D GS PG
Sbjct: 17  WLIKKENDP----AHSQWYIDR--FKAMEAEGKDMAGESRLVNALASRGAKILDAGSGPG 70

Query: 80  SWSQVAARITGSNANNTRVVAIDILD------MEPILGVKFFKFDFLDLDSWEFIRQAIG 133
              +    +        RV  +DI                +   D +D      + QA+G
Sbjct: 71  RVGKQLHTLGH------RVTGVDIDPELIDEARRVCPEATWVTADLVD------LPQALG 118

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193
              D    D     +    +      S  +       ++L  GG  ++    G   +   
Sbjct: 119 FESDAG-EDGFELIVCAGNVMGFLARSTRKPVLENFRKVLAPGGRAVIGYGSGPGRDYAF 177

Query: 194 CLL 196
              
Sbjct: 178 AQF 180


>gi|242777041|ref|XP_002478952.1| ubiquinone biosynthesis methlytransferase Coq5, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218722571|gb|EED21989.1| ubiquinone biosynthesis methlytransferase Coq5, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 324

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 53/182 (29%), Gaps = 27/182 (14%)

Query: 30  LNRHINDPYVQRAQL--EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG----SWSQ 83
           ++R   D +V+          +RSA      ++K    +    I+D+    G        
Sbjct: 91  IHRLWKDHFVRSLNPGSPSMLSRSA------DDK----EKGWNILDVAGGSGDIAFRMLD 140

Query: 84  VAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
            A  I   N  +TRV   DI       G K        LD+  +  + +           
Sbjct: 141 HATNIN--NDRDTRVTVADINADMLAEGRK------RSLDTPYYNTKRLSFMVANAEHMP 192

Query: 144 A-YPTIGHRKIDHLRTMSLC--EAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
                            +    +AA   A  +L  GG F    F      D+   + K +
Sbjct: 193 QVPDNSVDLYTVSFGIRNFTDKQAALNEAYRVLKPGGVFACMEFSKVQNFDLFNEVYKRW 252

Query: 201 QK 202
             
Sbjct: 253 SF 254


>gi|218291354|ref|ZP_03495308.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218238758|gb|EED05973.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 479

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-----LDMEPILGVKFFKFDFL 120
           Q   RI+DL ++PG  +  AA +  +     ++VA DI     L +              
Sbjct: 105 QPGERILDLCAAPGGKTTHAA-LLAARRGGAQIVANDIHRDRVLALAENAERVGAPCAIT 163

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAY--------PTIGHRKIDHL--RTMSLCEAATFFAL 170
           +                +V+             P +          R  +L +     AL
Sbjct: 164 NESPAALAEAWPQAFDAMVVDTPCSGEGMFRKDPAVRAEWRPDAPERFQALQKDILHHAL 223

Query: 171 EMLNIGGDFL 180
            ML  GG  +
Sbjct: 224 TMLRPGGRLV 233


>gi|310790452|gb|EFQ25985.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 654

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTR-VVAIDILDMEPILGVKFFKFDFLDLDS 124
               R++++    G WSQ   +      ++      +DI  M    G      D      
Sbjct: 334 SPPGRVLEVACGSGFWSQSCHQYFAQRGHSDIEFTGMDIAPMGANAG------DVSREMK 387

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           W F++  +   P           +       + +    +AA      +L  GG 
Sbjct: 388 WNFVQHDMRHFPWPFADGEFDLVMVKDLSLVVTSPHSLQAAIEEYHRILRPGGT 441


>gi|300088509|ref|YP_003759031.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528242|gb|ADJ26710.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 274

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 26/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV--------AIDILDMEPILGVKFFK 116
           L     ++DLGS  G  + +AAR  G       V         A D         V+F +
Sbjct: 71  LVPGETVLDLGSGAGFDAFLAARQVGPAGKVIGVDMTPDMLSRARDNAARSGFTNVEFRQ 130

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            +  DL           G  D V+S+        +            A    A  +L  G
Sbjct: 131 GEIEDLPVA-------SGTIDTVISNCVINLSPDKP-----------AVFAEAFRVLKPG 172

Query: 177 GDFLV 181
           G   V
Sbjct: 173 GRLAV 177


>gi|256378799|ref|YP_003102459.1| methyltransferase type 11 [Actinosynnema mirum DSM 43827]
 gi|255923102|gb|ACU38613.1| Methyltransferase type 11 [Actinosynnema mirum DSM 43827]
          Length = 267

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 32/136 (23%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDFL 120
               ++D     GS +  AAR  G + +   V      + +       +  V+F + D  
Sbjct: 37  PGEHVLDACCGIGSSAAPAARAVGPDGSVDAVDLSPELLGVGRRRAAGLGNVRFAQADVT 96

Query: 121 D----LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                   ++ ++ A G      L DM                   + A    + +L  G
Sbjct: 97  AWPGRDGGYDLVQCAFGV---FFLPDM-------------------DDAARGLVRLLRPG 134

Query: 177 GDFLVKTFQGGTTNDI 192
           G F+V  ++ G   + 
Sbjct: 135 GRFVVAVWRSGALEEF 150


>gi|146411779|gb|ABI54474.1| polyprotein [Wesselsbron virus]
          Length = 3405

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R A K+  ++E+   L+   R++DLG   G WS  AA      +       + I   E 
Sbjct: 2555 SRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKG--YTLGIEGHEK 2611

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + ++   ++ +       +        D +L D+   +     ++  RTM         
Sbjct: 2612 PIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESSSN-PLVERDRTMK-VLENFER 2669

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
               +     +F VK          + L  L+  F   I   P  SR  + EM+ +
Sbjct: 2670 WKHVNTE--NFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPF-SRNSTHEMYYI 2721


>gi|238801615|ref|YP_002922020.1| polyprotein [Wesselsbron virus]
 gi|197631351|gb|ACH70606.1| polyprotein [Wesselsbron virus]
          Length = 3405

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 10/175 (5%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R A K+  ++E+   L+   R++DLG   G WS  AA      +       + I   E 
Sbjct: 2555 SRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKG--YTLGIEGHEK 2611

Query: 109  ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
             + ++   ++ +       +        D +L D+   +     ++  RTM         
Sbjct: 2612 PIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESSSN-PLVERDRTMK-VLENFER 2669

Query: 169  ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
               +     +F VK          + L  L+  F   I   P  SR  + EM+ +
Sbjct: 2670 WKHVNTE--NFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPF-SRNSTHEMYYI 2721


>gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS
           571]
 gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 346

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 143 MAYPTIGHRKIDHLRTMSLCEA--ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHF 200
           M   T   + +       L E   A   A  +L  GG  +V TF       +   + K+F
Sbjct: 209 MHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHS-----LEDRIVKNF 263

Query: 201 QKVIHVKPVASR 212
                  P ASR
Sbjct: 264 LSHRSKAPSASR 275


>gi|86749091|ref|YP_485587.1| arsenite S-adenosylmethyltransferase [Rhodopseudomonas palustris
           HaA2]
 gi|86572119|gb|ABD06676.1| UbiE/COQ5 methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 276

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 26/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--------VAIDILDMEPILGVKFFK 116
           L+    ++DLGS  G    ++AR  G       +        +A D         V+F K
Sbjct: 69  LKPGETVLDLGSGGGIDVLLSARRVGPTGKAYGLDMTDEMLALARDNQRKAGADNVEFLK 128

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
                    E I      + D+++S+      G +                 A  +L  G
Sbjct: 129 GQI------EAIP-LPDNSVDVIISNCVINLSGDKD-----------RVLREAFRVLKPG 170

Query: 177 GDFLV 181
           G F V
Sbjct: 171 GRFAV 175


>gi|322387522|ref|ZP_08061131.1| NOL1/NOP2/sun family protein [Streptococcus infantis ATCC 700779]
 gi|321141389|gb|EFX36885.1| NOL1/NOP2/sun family protein [Streptococcus infantis ATCC 700779]
          Length = 437

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
           +   +++DL ++PG  S Q+A+ + G     +  ++     +        G        +
Sbjct: 90  KPGMKVLDLAAAPGGKSTQLASYLAGDGLLVSNEISSKRSKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  DL++ D               + +  +D+     SL       A
Sbjct: 147 TNESADRLAKVFKGYFDLIVLDAPCSGEGMFRKQPDAMDYWSVDYPSQCASLQREILSDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 ITMLADGGRLV 217


>gi|295695000|ref|YP_003588238.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912]
 gi|295410602|gb|ADG05094.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912]
          Length = 194

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLDSW 125
               + D+G+ PG ++   A           V AID+   M  +L  ++           
Sbjct: 35  PADTVADIGAGPGYFTLPLAER-----TQGTVYAIDVEPRMLEVLQSRWPGG------MP 83

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             +R  +G   DL L D +   + +  + H   +   + A   A  +L + G  +V  + 
Sbjct: 84  ARVRPLVGAADDLPLPDGSVDRLLYSLVLHE--VDALDEALQEARRVLRLNGRMVVIEWH 141

Query: 186 GGTTND 191
              T+ 
Sbjct: 142 PEATDQ 147


>gi|307943521|ref|ZP_07658865.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
           TrichSKD4]
 gi|307773151|gb|EFO32368.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
           TrichSKD4]
          Length = 462

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 24/155 (15%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---------LDMEPI-LGVKFFK 116
           S + + DL ++PG  +   A      A++ +V A+DI          +M+ + L V+   
Sbjct: 266 SGQTVADLCAAPGGKTAQLA------ASSGKVTAVDISKGRLKRLSQNMDRLGLPVETVV 319

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM---L 173
            D    D  E     +   P      +                +L E        +   L
Sbjct: 320 ADLRKYDPPELFDAILLDVPCSATGTIRRHPDVPWLKGERDIETLAEIQKELLERVAGWL 379

Query: 174 NIGGDFL---VKTFQGGTTNDILCLLKKH--FQKV 203
             GG  +       +      I   LK H  F+ V
Sbjct: 380 KPGGQMVYCTCSMERDEGEAQIEAFLKAHLDFRLV 414


>gi|254520991|ref|ZP_05133046.1| oxidoreductase [Stenotrophomonas sp. SKA14]
 gi|219718582|gb|EED37107.1| oxidoreductase [Stenotrophomonas sp. SKA14]
          Length = 389

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
            + ++DL  + G ++  AA    S      +    I   +    +   +  F+  D + +
Sbjct: 216 GKSVLDLCCNTGGFAVYAAARGASEVVGIDIDEDVIQIAKGNSRLNNVRPKFVQSDIFPW 275

Query: 128 IRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +R A   G   D+V+ D A  T    ++       L       AL ++  GG F   +  
Sbjct: 276 LRDAANRGEQYDVVILDPAKMTRDRDQVITALKKYLDMN--KLALGVVKPGGLFATFSCT 333

Query: 186 G-GTTNDILCLLKK 198
           G    +  L +L++
Sbjct: 334 GLVAEDQFLDMLRR 347


>gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265]
 gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 15/127 (11%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVV-----AIDILDMEPILGVKFFKFDFLD 121
               ++D+ ++PG  +   A + G+  + T +         I  +   LG+       L 
Sbjct: 250 PGSEVLDMCAAPGGKTAALAELMGNEGHITALDIYEQKTNKIRRLAETLGISIITA--LT 307

Query: 122 LDSWEFIR-----QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---ALEML 173
            D+  FI        +   P      +   T    K+D  +   L +        A  +L
Sbjct: 308 DDARSFIPPTPPDAILLDAPCTGTGVLGRRTELRWKLDSEKLDGLLKLQAELLEHAAHIL 367

Query: 174 NIGGDFL 180
             GG  +
Sbjct: 368 KEGGVLV 374


>gi|229151423|ref|ZP_04279626.1| hypothetical protein bcere0011_29680 [Bacillus cereus m1550]
 gi|228631966|gb|EEK88592.1| hypothetical protein bcere0011_29680 [Bacillus cereus m1550]
          Length = 415

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEAPVSPYKP 291


>gi|206969282|ref|ZP_03230237.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206736323|gb|EDZ53481.1| conserved hypothetical protein [Bacillus cereus AH1134]
          Length = 415

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEAPVSPYKP 291


>gi|121592891|ref|YP_984787.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax sp. JS42]
 gi|120604971|gb|ABM40711.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax sp. JS42]
          Length = 427

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 29  WL--NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           WL   R  +  Y +   +   +A+ A KL  I  K  +L+   R +D+G+  G     AA
Sbjct: 132 WLDPRRVYSCAYYRTPDMSLAQAQEA-KLDHICRKL-LLRPGDRFLDIGAGWGGLLLWAA 189

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           +  G +A    +       ++ ++  +  + 
Sbjct: 190 QEYGVDATGITLSRNQHAHVQRLIAERGLQG 220


>gi|254820547|ref|ZP_05225548.1| methyltransferase type 11 [Mycobacterium intracellulare ATCC 13950]
          Length = 248

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 25/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +      +D+GS PG+ +   AR  G +     V                   D  +   
Sbjct: 89  IPPGGIALDVGSGPGNVTASLARAAGPDGLALGV-------------------DISEPML 129

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRT---MSLC---EAATFFALEMLNIGGD 178
              +R   G     + +D     +     D   +   + L    +AA      +L  GG 
Sbjct: 130 ARAVRNEAGPQVGFIKADAQRLPLRDNTFDAAVSTAVLQLVPDPKAALAEIARVLRPGGR 189

Query: 179 FLVKT 183
             +  
Sbjct: 190 VAIMV 194


>gi|294654691|ref|XP_002770020.1| DEHA2A09724p [Debaryomyces hansenii CBS767]
 gi|199429073|emb|CAR65397.1| DEHA2A09724p [Debaryomyces hansenii]
          Length = 317

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 28/160 (17%)

Query: 63  QILQSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDM-------------EP 108
            + +   +++D     G  +Q  A  +  ++   + ++ +DI                  
Sbjct: 90  SVFKPGMKMMDFACGTGILTQYFAPYLATNSDQTSDIIGVDINSTFLAKYNEKASHVNAT 149

Query: 109 ILGV--KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
             GV    +  D LD  + E + Q  G    +  +   +    + K+    +        
Sbjct: 150 YDGVAMTSYLCDILDPTAQEVVSQFEGSMDLITCTLSYHHIDNYEKVTQKLST------- 202

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
                 L  GG   +  F        +   K   + V H+
Sbjct: 203 -----FLRPGGWLFIVDFYNEDVETSVSATKSASEAVRHM 237


>gi|180165296|gb|ACB87142.1| polyprotein [Dengue virus 1]
 gi|239840392|gb|ACS32001.1| polyprotein [Dengue virus 1]
 gi|239840404|gb|ACS32007.1| polyprotein [Dengue virus 1]
 gi|239840408|gb|ACS32009.1| polyprotein [Dengue virus 1]
          Length = 3392

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 11/166 (6%)

Query: 61   KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
            +  +++   +++DLG   G WS   A +                + EPI     + ++ +
Sbjct: 2560 ERNLVKPEGKVIDLGCGRGGWSYYCAGLKKVTEVKGYTKGGPGHE-EPIPMAT-YGWNLV 2617

Query: 121  DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
             L S + +        D +L D+   +  +  I+  RT              L  G  F 
Sbjct: 2618 KLHSGKDVFFMPPEKCDTLLCDIG-ESSPNPTIEEGRT----LRVLKMVEPWLR-GNQFC 2671

Query: 181  VKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
            +K       +  + L  +++    ++   P+ SR  S EM+ ++ G
Sbjct: 2672 IKILNPYMPSVVETLEQMQRKHGGMLVRNPL-SRNSSHEMYWVSCG 2716


>gi|82712724|ref|YP_415514.1| large polymerase protein [Menangle virus]
 gi|82393545|gb|ABB72059.1| large polymerase protein [Menangle virus]
          Length = 2269

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 63   QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
             +  S +        P   +Q    I   N  ++  V+ D +   P+      + D    
Sbjct: 1847 SLFSSGQNPPQRNFQP-MPTQFVESIVYQNIQDSESVSDDQI-FYPLWSGDGCQTDLTKT 1904

Query: 123  DSWEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +   FI  + I  +  L+  D            H   ++        A  +L   G  +V
Sbjct: 1905 ECTNFILSKIISYSLSLINIDFEDTRSLMSSEVHKAHIN----TLILAGMLLKPNGILIV 1960

Query: 182  KTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
            KT+       N ++ + +  F     ++   S   S E+FL+
Sbjct: 1961 KTYLTPFCRFNHLIRMTQHIFGFCHALRSSYSDPNSDEIFLI 2002


>gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 454

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDM-------EPILGVKFFKF 117
           +    ++DL ++PG  +   A ++ G+   + R ++    D+       +  L V   + 
Sbjct: 255 KEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLIRENAIRQNFLNVVVSEK 314

Query: 118 DFL--DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---ALEM 172
           D    D +S+E     I   P   L  +   T     I       L          A   
Sbjct: 315 DATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQTGIAELVNLQRKILEQASTY 374

Query: 173 LNIGGDFL 180
           +  GG  +
Sbjct: 375 VKPGGTLI 382


>gi|225389039|ref|ZP_03758763.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme
           DSM 15981]
 gi|225044897|gb|EEG55143.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme
           DSM 15981]
          Length = 532

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVV----AIDILDMEPILGVKFFKFDFL 120
           +   R++DL ++PG  S Q+ AR+ G     +  +    A  +L    + G+       +
Sbjct: 105 EPGDRVLDLCAAPGGKSTQLGARLLGEGLLVSNDISNSRARALLKNLELAGIPNIC---V 161

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM-----------AYPTIGHRKIDHLRTMSLCEAATFFA 169
             +S E + Q      D +L D                             L       A
Sbjct: 162 TSESPERLSQVFPLYFDKILVDAPCSGEGMFRRDGEMVKDWALKGPAYYAPLQREILAAA 221

Query: 170 LEMLNIGGDFL 180
           + ML  GG  L
Sbjct: 222 VTMLRPGGTIL 232


>gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428]
 gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428]
          Length = 410

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 26/135 (19%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--------GVKF--- 114
           Q    ++D  ++PG  +   A++     +  R++A D+ D             GV     
Sbjct: 230 QPGETVLDACAAPGGKTTYLAQLMH---DQGRIIACDLYDSRVARLRENLKRLGVTIARA 286

Query: 115 FKFDFL------DLDSWEFIRQAIGGNPDLV---LSDMAYPTIGHRKIDHLRTMSLCEAA 165
            + D +      D DS++ I      +   V     D+ +       I          A 
Sbjct: 287 IRHDCMQAGPPLDPDSFDRILVDAPCSNTGVIRRRVDVRWRLTEEDFIRMPAQQ---LAL 343

Query: 166 TFFALEMLNIGGDFL 180
                 +L  GG  +
Sbjct: 344 LRRTATLLKPGGTLV 358


>gi|258405364|ref|YP_003198106.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797591|gb|ACV68528.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfohalobium
           retbaense DSM 5692]
          Length = 362

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 23/137 (16%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNA----NNTRVVAIDILDMEPILG---VKFFKF 117
           LQ   R++DLG   GS++  AA    ++     +N R   + I +     G   V+    
Sbjct: 129 LQDGMRVLDLGCGWGSFTLWAAERFPNSRFWAVSNARDQGLHIREQAAKRGLSNVEALTA 188

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D  D               D ++S   +  + + +    R  S            L  GG
Sbjct: 189 DMNDFAPPAA-----AVPFDRIVSVEMFEHMRNWQALLARIAS-----------WLADGG 232

Query: 178 DFLVKTFQGGTTNDILC 194
              +  F          
Sbjct: 233 HLFLHVFTHRELAYFFR 249


>gi|170751295|ref|YP_001757555.1| methyltransferase small [Methylobacterium radiotolerans JCM 2831]
 gi|170657817|gb|ACB26872.1| methyltransferase small [Methylobacterium radiotolerans JCM 2831]
          Length = 324

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPIL-GVKFFKFDFLDL 122
           +  RR VD+G   G+     A+     A    VV +DI    M       +    D +D+
Sbjct: 140 RPVRRAVDIGCGSGAAGICVAKR----APGAEVVLVDINPAAMRAARVNARLAGTDGVDV 195

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDH---LRTMSLCEAATFFALEMLNIGGDF 179
              + +R   G    +V +         R   H        L  A    A   L  GG  
Sbjct: 196 RRSDMLRDVEGQFDLIVSNPPFMIDTAERAYRHGGGPLGAGLSLAVAEQAAGRLAPGGSL 255

Query: 180 L 180
           +
Sbjct: 256 V 256


>gi|83319276|ref|YP_424051.1| hemolysin A [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|83283162|gb|ABC01094.1| hemolysin A [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 269

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 35  NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           ND    R+    + +R+  KL +   K  I  +N+  +D+G+S G ++Q       +   
Sbjct: 48  NDVIEIRSTKLKYVSRAYEKLEKAINKWNIDLTNKVCLDIGASTGGFTQCCLD-NNAKLV 106

Query: 95  NTRVVAIDILDMEPILGVKFF---KFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
               V  D L    +  +K     + +F +    +F++       D V  D++
Sbjct: 107 YAVDVGTDQLHSSLLNNLKVINMSQCNFRNAKKQDFLKNI-----DFVCCDVS 154


>gi|76801130|ref|YP_326138.1| S-adenosylmethionine-dependent methyltransferase 3 [Natronomonas
           pharaonis DSM 2160]
 gi|76556995|emb|CAI48569.1| homolog 6 to S-adenosylmethionine-dependent methyltransferase 3
           [Natronomonas pharaonis DSM 2160]
          Length = 227

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 30/124 (24%), Gaps = 26/124 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +++  ++DLG   G     AAR      +  R   +D                       
Sbjct: 37  EADETVLDLGCGSG----YAARALRDAKDAGRAYGLDGSP----------------EMVR 76

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA------TFFALEMLNIGGDF 179
                        V+ D          IDH  +M     A            +L  GG F
Sbjct: 77  NAREYTDDPQVSYVVGDFGSLPFAADSIDHAFSMEAFYYAADPVGALNELRRVLRPGGTF 136

Query: 180 LVKT 183
               
Sbjct: 137 YCAV 140


>gi|125538276|gb|EAY84671.1| hypothetical protein OsI_06043 [Oryza sativa Indica Group]
          Length = 464

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSN--ANNTRVVAIDILDMEPILG-VKFFKFDFLD 121
           L  ++R++DL    G ++  AA+   +N    ++   A+D+     IL  +   +  F+ 
Sbjct: 285 LSKDQRVLDLCCYSGGFALNAAKGGANNVIGIDSSASALDLASKNIILNKLDTQRISFVK 344

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+  F++ AI  N    L  +  P +  RK        +  +    A++++  GG  + 
Sbjct: 345 EDATAFMKGAISRNEVWDLVILDPPKLAPRKKVLQSASGMYRSLNALAMQVVKPGGLLMT 404

Query: 182 KTFQGGTTN 190
            +  G  T 
Sbjct: 405 CSCSGAMTQ 413


>gi|146312893|ref|YP_001177967.1| putative RNA 2'-O-ribose methyltransferase [Enterobacter sp. 638]
 gi|172045970|sp|A4WDY6|RLMM_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|145319769|gb|ABP61916.1| conserved hypothetical protein [Enterobacter sp. 638]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RS  KL +        +E  + L +    VDLG+ PG W+    +  
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMHAVDLGACPGGWTYQLVKRN 233


>gi|119945329|ref|YP_943009.1| putative RNA 2'-O-ribose methyltransferase [Psychromonas ingrahamii
           37]
 gi|166199446|sp|A1SV95|RLMM_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|119863933|gb|ABM03410.1| methyltransferase [Psychromonas ingrahamii 37]
          Length = 365

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
             +RS  KL +         E+ + L S  R VDLG+ PG W+    R 
Sbjct: 183 APSRSTLKLDEAIQVFLTAEEQQERLHSGMRAVDLGACPGGWTYQLVRR 231


>gi|261856122|ref|YP_003263405.1| cyclopropane-fatty-acyl-phospholipid synthase [Halothiobacillus
           neapolitanus c2]
 gi|261836591|gb|ACX96358.1| Cyclopropane-fatty-acyl-phospholipid synthase [Halothiobacillus
           neapolitanus c2]
          Length = 394

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 35/165 (21%)

Query: 29  WLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
           W   H  D     AQ          KL  I  K + L+   R++D+G   GS+ + AA  
Sbjct: 153 WEQAHNLD----EAQEA--------KLDLICRKLE-LKPGERVLDIGCGWGSFMRFAAER 199

Query: 89  TGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
            G       +        + +   L V F   D+ D+D           + D ++S   +
Sbjct: 200 YGVECVGLTISKEQAKLGQALCAGLPVTFRLQDYRDID----------ESFDKIVSIGMF 249

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
             +GH+                     L   G FL+ T      N
Sbjct: 250 EHVGHKNYATY---------MDVVRRCLKPDGLFLLHTIASSDVN 285


>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
           polymyxa SC2]
 gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
           polymyxa SC2]
          Length = 471

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILG---VKF 114
           +    ++D  ++PG  +   A +     +  R+VA D        I +    LG   V+ 
Sbjct: 274 EPGMTVLDCCAAPGGKTAHMAELMK---DRGRIVANDLHAHKHQLIREQASRLGLDAVET 330

Query: 115 FKFDFLDLD----SWEFIRQAIGGNPD-LVLSDMAYPTIGHRKIDHLR-TMSLCEAATFF 168
              D LDL        F R  +        +          +  + +R    L       
Sbjct: 331 VTGDALDLKERYAPASFDRILLDAPCSGFGVIRRKPDLRWSKTAEDVRDITQLQHELLDS 390

Query: 169 ALEMLNIGGDFL 180
              +L  GG  +
Sbjct: 391 VAGLLKPGGILV 402


>gi|302419791|ref|XP_003007726.1| sterol 24-C-methyltransferase [Verticillium albo-atrum VaMs.102]
 gi|261353377|gb|EEY15805.1| sterol 24-C-methyltransferase [Verticillium albo-atrum VaMs.102]
          Length = 381

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 35/163 (21%)

Query: 36  DPYVQR-AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN 94
           +P+ Q  A+ E + A        IN     ++   +++D+G   G  ++  A+ TG++  
Sbjct: 109 EPFYQAIARHEHYLAHC------IN-----IKRGMKVLDVGCGVGGPAREIAKFTGAH-- 155

Query: 95  NTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID 154
              +  ++  D +            +D  +    ++ + G  D V  D    +      D
Sbjct: 156 ---ITGLNNNDYQ------------IDRATHYAAKEGLSGQLDFVKGDFMQMSFPDNSFD 200

Query: 155 HLRTMSLCEAATFF------ALEMLNIGGDFLVKTFQGGTTND 191
            +  +     A            +L  GG F V  +      D
Sbjct: 201 AVYAIEATVHAPTLEGIYSEIFRVLKPGGVFGVYEWLMTDEYD 243


>gi|262041562|ref|ZP_06014759.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041123|gb|EEW42197.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|224826558|ref|ZP_03699659.1| Methyltransferase type 11 [Lutiella nitroferrum 2002]
 gi|224601159|gb|EEG07341.1| Methyltransferase type 11 [Lutiella nitroferrum 2002]
          Length = 292

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNT-------RVVAIDILDMEPILGVKFFK 116
           +++    ++DL   P +     AR+                 +A + L    +  V   +
Sbjct: 63  VIRPGDVVLDLACGPANQLLQIARLHPDARFIGLDASAGMLALARENLVQAGLPNVSLQQ 122

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI- 175
            D   LD             D VL  M+   +   ++       +          +L   
Sbjct: 123 GDIGRLD------GFADAAVDCVLCTMSLHHLPDTELLGQTMRQI--------RRVLRPD 168

Query: 176 GGDFLVKTFQGGTTNDILCLLKKHF 200
           GG +L           +     + F
Sbjct: 169 GGVYLA------DFGRLKRRATQSF 187


>gi|191638489|ref|YP_001987655.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei BL23]
 gi|190712791|emb|CAQ66797.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei BL23]
 gi|327382524|gb|AEA54000.1| NOL1/NOP2/sun family protein [Lactobacillus casei LC2W]
 gi|327385721|gb|AEA57195.1| NOL1/NOP2/sun family protein [Lactobacillus casei BD-II]
          Length = 443

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 23/148 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  S   A   G          N   ++V++ ++       G +   
Sbjct: 92  KPGERVLDLCAAPGGKSTQLACYLGDTGLLVSNEINGPRSKVLSSNLERW----GTRQIL 147

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMA-------YPTIGHRKIDHLRT-MSLCEAATFF 168
               D D+       +     +                I +   D+        +     
Sbjct: 148 VTNNDPDTLAKAWPQMFDRILVDAPCSGEGMFRKDPDAIKYWHADYPAQCAERQKQILKA 207

Query: 169 ALEMLNIGGDFL--VKTFQGGTTNDILC 194
           A++ML  GG  +    TF       I+ 
Sbjct: 208 AVKMLAPGGTLIYSTCTFSPEEDEQIIA 235


>gi|302379428|ref|ZP_07267915.1| methyltransferase domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312773|gb|EFK94767.1| methyltransferase domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 277

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDF 119
           ++  +      +D+G   G+ +   A+          +V  DI          K    + 
Sbjct: 100 QYVEIPDGGVGLDVGCGSGALTIACAKRNPK----ATMVGCDIWSGSYKTEFSKELCENN 155

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
             L+  E +R   G   +L   D ++  +    + H       +      L +L  GG F
Sbjct: 156 AKLEGIENVRFKEGNAVNLPFEDESFDVVTSNYVYHNIMGHNKQKLLLETLRVLKKGGVF 215

Query: 180 L----VKTFQGGTTNDILCLLKK 198
           +    +K    G     +  LK+
Sbjct: 216 VIHDLIKKSNYGDIEKFIEELKE 238


>gi|284028686|ref|YP_003378617.1| type 12 methyltransferase [Kribbella flavida DSM 17836]
 gi|283807979|gb|ADB29818.1| Methyltransferase type 12 [Kribbella flavida DSM 17836]
          Length = 259

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 53  YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV 112
           + LL ++   Q+    RR++DL   PGS          +      VVA+DI  +   L  
Sbjct: 40  FGLL-LDYVEQLAGPPRRVLDLCCGPGS----LTERVLARFPAAEVVAVDIDPLLLDLAR 94

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
             F  D          RQ    + DL L+      +           +L E     A  +
Sbjct: 95  DRFAGD---HRVSVLARQLAAPDWDLGLTTGFDAVVTATATHWFPADALAEVYAGVA-RL 150

Query: 173 LNIGGDF 179
           L  GG F
Sbjct: 151 LRPGGVF 157


>gi|206577966|ref|YP_002236829.1| hypothetical protein KPK_0960 [Klebsiella pneumoniae 342]
 gi|288933779|ref|YP_003437838.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Klebsiella variicola
           At-22]
 gi|290511141|ref|ZP_06550510.1| hypothetical protein HMPREF0485_02911 [Klebsiella sp. 1_1_55]
 gi|226705363|sp|B5XUY0|RLMM_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|206567024|gb|ACI08800.1| conserved hypothetical protein [Klebsiella pneumoniae 342]
 gi|288888508|gb|ADC56826.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Klebsiella variicola
           At-22]
 gi|289776134|gb|EFD84133.1| hypothetical protein HMPREF0485_02911 [Klebsiella sp. 1_1_55]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|70607497|ref|YP_256367.1| methyltransferase [Sulfolobus acidocaldarius DSM 639]
 gi|68568145|gb|AAY81074.1| methyltransferase [Sulfolobus acidocaldarius DSM 639]
          Length = 178

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 26/162 (16%)

Query: 55  LLQINEKH-QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           L++  +     ++    ++D G  PG ++   AR  G+      V A+D  + +      
Sbjct: 21  LIESEDDFIDYVKPGMVVLDHGCGPGYYTFSLARKVGNKG---LVYALDSDERQ------ 71

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC-----EAATFF 168
                 + + S +  R+ I      V  D++            + +  C     E A   
Sbjct: 72  ------IRILSSKLEREGITNVKTFVSRDLSPIPSNSIDFVLSKDVLCCTVLHKELADEI 125

Query: 169 ALEMLNIGG-DFL--VKTFQGGTTNDILCLLKKHF-QKVIHV 206
              +L  GG  F+   K F     N     L   F   V   
Sbjct: 126 -KRVLKPGGLAFVSIRKGFGPDPRNISAKELFSLFPDSVKRY 166


>gi|116494978|ref|YP_806712.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
 gi|227535017|ref|ZP_03965066.1| tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|116105128|gb|ABJ70270.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
 gi|227187332|gb|EEI67399.1| tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 443

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 23/148 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +   R++DL ++PG  S   A   G          N   ++V++ ++       G +   
Sbjct: 92  KPGERVLDLCAAPGGKSTQLACYLGDTGLLVSNEINGPRSKVLSGNLERW----GTRQIL 147

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMA-------YPTIGHRKIDHLRT-MSLCEAATFF 168
               D D+       +     +                I +   D+        +     
Sbjct: 148 VTNNDPDTLAKAWPQMFDRILVDAPCSGEGMFRKDPDAIQYWHADYPAQCAERQKQILKA 207

Query: 169 ALEMLNIGGDFL--VKTFQGGTTNDILC 194
           A++ML  GG  +    TF       I+ 
Sbjct: 208 AVKMLAPGGTLIYSTCTFSPEEDEQIIA 235


>gi|315441657|ref|YP_004074534.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
 gi|315265312|gb|ADU02053.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
          Length = 208

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 28/125 (22%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILG-VKF 114
           +      +++G  PG  SQ+  +  G++    R+ A+D+           + P    V  
Sbjct: 33  IPPGSTALEIGCGPGYGSQLVLQRFGAD----RIDALDLDPTMIDRARKRLAPCGNRVTL 88

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            +    DL               L   D +Y  +    I H         A   A  +L 
Sbjct: 89  VRGSATDL------------RAALDADDDSYDAVFDFGIIHHIPQW--RTAVAEAARVLA 134

Query: 175 IGGDF 179
            GG F
Sbjct: 135 PGGRF 139


>gi|238896278|ref|YP_002921014.1| putative RNA 2'-O-ribose methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330003169|ref|ZP_08304548.1| putative RNA 2'-O-ribose methyltransferase YgdE [Klebsiella sp. MS
           92-3]
 gi|238548596|dbj|BAH64947.1| putative RNA 2'-O-ribose methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328537052|gb|EGF63336.1| putative RNA 2'-O-ribose methyltransferase YgdE [Klebsiella sp. MS
           92-3]
          Length = 366

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|294508979|ref|YP_003565868.1| methyltransferase, UbiE/COQ5 family [Bacillus megaterium QM B1551]
 gi|294352283|gb|ADE72605.1| methyltransferase, UbiE/COQ5 family [Bacillus megaterium QM B1551]
          Length = 269

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM---------EPILGVK 113
            IL+    ++D+G   G+ ++  A + G N    RV+ ID   +             G+ 
Sbjct: 34  SILKKGMTVLDIGCGTGAITRGIAEVVGPNG---RVIGIDSNPILIEKARQTHGETPGLT 90

Query: 114 FFKFDF 119
           F   D 
Sbjct: 91  FETGDI 96


>gi|223984268|ref|ZP_03634413.1| hypothetical protein HOLDEFILI_01707 [Holdemania filiformis DSM
           12042]
 gi|223963753|gb|EEF68120.1| hypothetical protein HOLDEFILI_01707 [Holdemania filiformis DSM
           12042]
          Length = 405

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 27/156 (17%)

Query: 58  INEKHQI-----LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-------- 104
           +++K+       L   R ++D  +  GS++     +  + A   RV+A DI         
Sbjct: 216 LDQKYNRQAAARLAKGRTVLDCCTHTGSFA-----LNAAKAGAARVIAADISASALASAR 270

Query: 105 ---DMEPILGV-KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
               +  +  V +F + D  DL +    +       D ++ D    T   + I +     
Sbjct: 271 HNAQLNGLEAVMEFVQADVFDLLADPKWKAQ---GVDYIILDPPAFTKSRKTIRNAYQGY 327

Query: 161 LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
                   A+++L  GG F   +      + +   +
Sbjct: 328 CQINTL--AMKLLPRGGLFATASCSHFMEDAMFEAM 361


>gi|270264833|ref|ZP_06193097.1| putative RNA 2'-O-ribose methyltransferase [Serratia odorifera
           4Rx13]
 gi|270041131|gb|EFA14231.1| putative RNA 2'-O-ribose methyltransferase [Serratia odorifera
           4Rx13]
          Length = 367

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARI 88
             +RS  KL +        +E  + L S    VDLG+ PG W+    + 
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLSSGMHAVDLGACPGGWTYQLVQR 232


>gi|330445128|ref|ZP_08308780.1| 23S rRNA 2'-O-ribose C2498 methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489319|dbj|GAA03277.1| 23S rRNA 2'-O-ribose C2498 methyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 361

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        NE  + L      VDLG+ PG W+ Q+  R    +A +  +
Sbjct: 184 APSRSTLKLEEAFHVFIPRNEWDERLAPGMWGVDLGACPGGWTYQLVKRSMFVHAIDNGL 243

Query: 99  VAIDILDM--------------EPILGVKFFKFDFLDLDSW 125
           +A  ++D                P   V +   D ++  + 
Sbjct: 244 MAQSLMDTGQVKHHAVDGFKFEPPRKNVTWIVCDMVEKPAR 284


>gi|284166307|ref|YP_003404586.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015962|gb|ADB61913.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 295

 Score = 37.2 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 12/116 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L++   ++DLGS  G    +AAR  G +    RV+ +D+   M         + +F    
Sbjct: 119 LEAGETVLDLGSGGGFDCFLAAREVGPSG---RVIGVDMTPEMLERARENAAEGEF---- 171

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
             E +   +G    L ++D    TI    + +L            A  +L  GG  
Sbjct: 172 --ENVEFRLGEIEHLPVADATVDTIVSNCVVNLSPDK--GQVFAEAYRVLRPGGTL 223


>gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6]
 gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6]
          Length = 437

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-------- 108
           Q++ +   +++  R++DL ++PG  S +A+ +TG +     V++ D+ + +         
Sbjct: 243 QLSVRAAGIRAGDRVLDLCAAPGGKSMLASDLTGPDG---LVISRDLTEYKTERIRENVE 299

Query: 109 ---ILGVKFFKFDFL--DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
              +  V+  + D    D  S   +   I   P      +        + D     +L +
Sbjct: 300 RLGLSNVEVQEHDATVPDDRSVGEMDVVIADVPCSGYGVIGKKPDIKYRADAENQKNLVD 359

Query: 164 AATFF---ALEMLNIGGDFL 180
                   A+  +  GG  L
Sbjct: 360 LQRKILSNAMTYVKPGGVLL 379


>gi|145559681|gb|ABP73665.1| non-structural polyprotein [Middelburg virus]
          Length = 2411

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 132  IGGNPDLVLSDMAY-PTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGDFLVKT- 183
            +G + DL   D+A+       +  H +     + A         AL  L  GG  L++  
Sbjct: 1207 LGLSTDLGRYDLAFINVHTEFRNHHYQQCE--DHAMKLQMLGGDALRHLKPGGCLLMRAY 1264

Query: 184  -FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
             +   T+  ++  L + F  +  ++P A  A + E+ LL  GF
Sbjct: 1265 GYADRTSEMVVNALARKFASIRVLRP-ACVASNTEVLLLLSGF 1306


>gi|152971679|ref|YP_001336788.1| putative RNA 2'-O-ribose methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|166199441|sp|A6TD87|RLMM_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|150956528|gb|ABR78558.1| putative RNA 2'-O-ribose methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 366

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|326510103|dbj|BAJ87268.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 454

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSN--ANNTRVVAIDILDMEPILG-VKFFKFDFLD 121
           L   +R++DL    G ++  AA+   +N    ++   A+D+ +   +L  +   +  FL 
Sbjct: 275 LSKGQRVLDLCCYSGGFALSAAKGGATNVTGIDSSGSALDLANENILLNKLDAERISFLK 334

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            D+  F++ AI  N    L  +  P +  RK        +  +    A++++  GG  + 
Sbjct: 335 EDATAFMKGAISRNELWDLVILDPPKLAPRKKVLQSASGMYRSLNALAMQVVKPGGLLMT 394

Query: 182 KTFQGGTTN 190
            +  G  T 
Sbjct: 395 CSCSGAMTQ 403


>gi|161653002|gb|ABX75372.1| polymerase [Zaire ebolavirus]
          Length = 2212

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 118  DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D  +   ++  R  +    +++  D       +R   +     L          +L    
Sbjct: 1903 DITNPTWFKDQRARLPKQVEVITMDAETTENINRSKLYEAVYKLILHHID--PSVLK--- 1957

Query: 178  DFLVKTFQGGTTNDIL--CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              ++K F   T   +     L   F     +KP+ S A S E +L    F
Sbjct: 1958 AVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLCLTNF 2007


>gi|75548697|sp|Q6V1Q2|L_EBOZ5 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|33860549|gb|AAQ55053.1| polymerase [Zaire ebolavirus]
          Length = 2212

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 118  DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D  +   ++  R  +    +++  D       +R   +     L          +L    
Sbjct: 1903 DITNPTWFKDQRARLPKQVEVITMDAETTENINRSKLYEAVYKLILHHID--PSVLK--- 1957

Query: 178  DFLVKTFQGGTTNDIL--CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              ++K F   T   +     L   F     +KP+ S A S E +L    F
Sbjct: 1958 AVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLCLTNF 2007


>gi|11761753|gb|AAG40171.1|AF272001_8 L protein [Zaire ebolavirus]
          Length = 2212

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 118  DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D  +   ++  R  +    +++  D       +R   +     L          +L    
Sbjct: 1903 DITNPTWFKDQRARLPKQVEVITMDAETTENINRSKLYEAVYKLILHHID--PSVLK--- 1957

Query: 178  DFLVKTFQGGTTNDIL--CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              ++K F   T   +     L   F     +KP+ S A S E +L    F
Sbjct: 1958 AVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLCLTNF 2007


>gi|21702655|gb|AAM76038.1| L protein [Zaire ebolavirus]
          Length = 2212

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 118  DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D  +   ++  R  +    +++  D       +R   +     L          +L    
Sbjct: 1903 DITNPTWFKDQRARLPKQVEVITMDAETTENINRSKLYEAVYKLILHHID--PSVLK--- 1957

Query: 178  DFLVKTFQGGTTNDIL--CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              ++K F   T   +     L   F     +KP+ S A S E +L    F
Sbjct: 1958 AVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLCLTNF 2007


>gi|10313999|ref|NP_066251.1| L [Zaire ebolavirus]
 gi|8489003|sp|Q05318|L_EBOZM RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|2546941|emb|CAA47483.1| L-polymerase, structural protein [Zaire ebolavirus]
 gi|4262354|gb|AAD14589.1| polymerase [Zaire ebolavirus]
 gi|23630490|gb|AAN37511.1| polymerase protein L [Zaire ebolavirus]
          Length = 2212

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 118  DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D  +   ++  R  +    +++  D       +R   +     L          +L    
Sbjct: 1903 DITNPTWFKDQRARLPKQVEVITMDAETTENINRSKLYEAVYKLILHHID--PSVLK--- 1957

Query: 178  DFLVKTFQGGTTNDIL--CLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              ++K F   T   +     L   F     +KP+ S A S E +L    F
Sbjct: 1958 AVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLCLTNF 2007


>gi|325479469|gb|EGC82565.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 264

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-------ILGVKFFKFDF 119
              +I+D+G+  G+ +    +  G +      ++ D LD+         +  V F K D 
Sbjct: 98  KKDKILDIGTGSGAIALSLGKKLGKSEILASDISDDALDLARENKKRIGVHNVSFIKSDI 157

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA-TFF-------ALE 171
            +  S +F    I   P +  SD  Y  +  R     ++    E    +F       A  
Sbjct: 158 FEEISGKFDI-IISNPPYINKSD--YENLDKRLYHEPKSALFAEENGLYFYKKIVSEANN 214

Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
            LN GG  + +       +    L K  F+ +  +K
Sbjct: 215 YLNCGGKLVFEIGYDQKQSLFELLNKFDFKNLKCIK 250


>gi|316933156|ref|YP_004108138.1| type 11 methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315600870|gb|ADU43405.1| Methyltransferase type 11 [Rhodopseudomonas palustris DX-1]
          Length = 282

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 42/160 (26%)

Query: 39  VQRAQLEGWRARSAYK---------LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
              AQ +G  A +            L Q       L     ++DLGS  G    ++AR  
Sbjct: 48  YDAAQEQGLPAEAMLASLGCGNPTALAQ-------LSPGEIVLDLGSGGGIDVLLSARRV 100

Query: 90  GSNANNTRV--------VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           G       +        +A D      +  V+F K +   +   +        + D+++S
Sbjct: 101 GPTGKAYGLDMTDAMLALARDNQRKAGLDNVEFLKGEIEAIPLPDA-------SVDVIIS 153

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           +      G +                 A  +L  GG F V
Sbjct: 154 NCVINLSGDKD-----------RVLREAFRVLKPGGRFAV 182


>gi|260599149|ref|YP_003211720.1| putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase
           [Cronobacter turicensis z3032]
 gi|260218326|emb|CBA33327.1| Putative RNA 2'-O-ribose methyltransferase ESA_00505 [Cronobacter
           turicensis z3032]
          Length = 366

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 435

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 19/151 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---------LDMEPIL--GVK 113
           L  N  ++D  S+PG     A  +    +    V A DI          +++ +    + 
Sbjct: 246 LGRNDVVLDACSAPGG---KACHMAEILSPEGHVDATDIHTHKIDLINFNIKKLKLDNIS 302

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTIGHRKIDHLRTM-SLCEAATFFALE 171
            F+ D  +  +  + +  +      L +          +  + ++++  L          
Sbjct: 303 AFQHDATEPYTRTYDKILVDAPCSGLGVLRHKPEIKYTQSKESIQSLVELQLQILENIKR 362

Query: 172 MLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
            +  GG  +       Q    N I   LK++
Sbjct: 363 NIKPGGTIVYSTCTIEQMENENVIYTFLKQN 393


>gi|239945448|ref|ZP_04697385.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239991911|ref|ZP_04712575.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291448904|ref|ZP_06588294.1| UbiE family methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291351851|gb|EFE78755.1| UbiE family methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 269

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 18/127 (14%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
           +AY L +       L+    ++D+G  PG+ +   A +        RV A+D      + 
Sbjct: 29  AAYLLDE-------LRPGLAVLDVGCGPGTITADLAALVAP----GRVTAVD-----AVA 72

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           G+       +D    E +  A+     L   D ++  +   ++       +   A     
Sbjct: 73  GILGGAAAVVDERGLENVEFAVADVHALEFPDDSFDVVHAHQVLQHVGDPV--QALREMR 130

Query: 171 EMLNIGG 177
            +   GG
Sbjct: 131 RVCRPGG 137


>gi|220907316|ref|YP_002482627.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219863927|gb|ACL44266.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 266

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 26/149 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           LQ+  R+V++G   G+ S   AR  G N +   V+ +D+   +              ++ 
Sbjct: 37  LQAGMRVVEIGCGTGNMSCWLARQVGGNGS---VIGVDVSPAQ--------------VEQ 79

Query: 125 WEFIRQAIG-GNPDLVLSDMAYPTIGHRKIDHLRT----MSLC--EAATFFALEMLNIGG 177
                +A G  N    ++D   P +     D +      M L     A    L +L  GG
Sbjct: 80  ARLQAEAFGLTNVSFAVADAYAPGLPLESFDLVYCRLVLMHLTHPLDALKQMLALLQSGG 139

Query: 178 DFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
             + +  +   +          F++V   
Sbjct: 140 RLVCE--EMDLSQWFAVPDNDAFRRVQAF 166


>gi|78043160|ref|YP_360803.1| hemolysin A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995275|gb|ABB14174.1| hemolysin A [Carboxydothermus hydrogenoformans Z-2901]
          Length = 266

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R  YKL +  E+ +I    + ++D+G+S G ++  A +   +      V A+D+
Sbjct: 59  YVSRGGYKLEKALEEFKINLQGKIVIDIGASTGGFTDCALQYGANT-----VYAVDV 110


>gi|317124058|ref|YP_004098170.1| trans-aconitate 2-methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315588146|gb|ADU47443.1| Trans-aconitate 2-methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 283

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 26/166 (15%)

Query: 20  RSCQGSSRDWLNRHINDP--YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
           R  +G    W      DP  Y + A     RAR  +   ++  + +     +R+VD+G  
Sbjct: 10  RGQRGRETLW------DPGQYGRFADE---RARPFH---ELVARIRTAAP-QRVVDIGCG 56

Query: 78  PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
           PG  +   AR       + RVV +D    E +   +    D       +++         
Sbjct: 57  PGDLTLGLARRWP----DARVVGVDSSP-EMLAEARTRDRDGR----VQWVESRAEAWDP 107

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           +V  D A+  +            L     +F  E L  GG F ++ 
Sbjct: 108 VVTGDPAFDVVITNATLQWIPTHLRLIPAWF--EALAPGGTFAMQV 151


>gi|229179509|ref|ZP_04306862.1| hypothetical protein bcere0005_28580 [Bacillus cereus 172560W]
 gi|228604010|gb|EEK61478.1| hypothetical protein bcere0005_28580 [Bacillus cereus 172560W]
          Length = 415

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+  ++D  + +    K+             E    F L +L    +    
Sbjct: 195 TLVNAFEDIPNFYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEGAPVSPYKP 291


>gi|261342228|ref|ZP_05970086.1| putative RNA 2'-O-ribose methyltransferase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315563|gb|EFC54501.1| putative RNA 2'-O-ribose methyltransferase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 366

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|71899314|ref|ZP_00681475.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71730940|gb|EAO33010.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 389

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           + + ++DL  + G ++  AA    ++     +    I   +    +   +  FL  D + 
Sbjct: 215 AGKTVLDLCCNTGGFAVYAALRGAADVVGVDIDQDVIQIAKANAKLNSVRPKFLQADIFP 274

Query: 127 FIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           ++R A   G   D+V+ D A  T    +I +     L       AL ++  GG F   + 
Sbjct: 275 YLRDAAVRGDQYDVVILDPAKMTRDRDQIINALKKYLDMN--KLALGVVKKGGLFATFSC 332

Query: 185 QG-GTTNDILCLLKK 198
            G  +    L +L++
Sbjct: 333 TGLISEEQFLEMLRR 347


>gi|295097360|emb|CBK86450.1| Predicted SAM-dependent methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 366

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|220966639|gb|ACL97360.1| L protein [Nariva virus]
          Length = 2201

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 119  FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
              +L+ + +I   +      ++      T    ++  L    LC      A+     G  
Sbjct: 1869 IGNLECYAYILNQVKIGTCSMVHCDMEGTSEKTRLQVL--EELC-HVVSIAVATGAPGSV 1925

Query: 179  FLVKTFQGGTT--NDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
             ++K    G    ++++  + + +++V    P  S  +S EM+++A   +
Sbjct: 1926 LVLKLMPLGDDWMSELIKFICEQYEEVFLHIPWYSNPDSTEMYVIAINLK 1975


>gi|296104469|ref|YP_003614615.1| putative RNA 2'-O-ribose methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058928|gb|ADF63666.1| putative RNA 2'-O-ribose methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 366

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L +    VDLG+ PG W+ Q+  R    ++ +   
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVSSVDNGP 243

Query: 99  VAIDILDMEPILGVKFFKFDFL 120
           +A  ++D      V + + D  
Sbjct: 244 MAQSLMDTGQ---VTWLREDGF 262


>gi|149916683|ref|ZP_01905185.1| putative methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149822400|gb|EDM81789.1| putative methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 269

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L   +R+V+LG   G  +   A   G++    RVVA+DI            +        
Sbjct: 40  LDEGQRVVELGCGAGHMTCWLADQVGASG---RVVAVDIS-----------REQLEHARR 85

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL--CEAATFFALEMLNIGGDFLV 181
               R  +                       L  M L   E A     E+L  GG  L 
Sbjct: 86  RCAERPWVDLVAADARDTGLAQGSFDVAFVRLLLMHLPEPERALEHCFELLRPGGVLLC 144


>gi|89067213|ref|ZP_01154726.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola granulosus HTCC2516]
 gi|89046782|gb|EAR52836.1| ribosomal RNA small subunit methyltransferase B, putative
           [Oceanicola granulosus HTCC2516]
          Length = 432

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 18/127 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD----------MEPILGVKFF 115
           +   R++DL ++PG       +     A    V A+DI                L  +  
Sbjct: 240 RPGERVLDLCAAPGG------KTLQVAATGADVTALDISPDRLARVEENLARCGLAARTL 293

Query: 116 KFD--FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
             D    D   W+ I      +    +             +  R + L       AL +L
Sbjct: 294 AGDALAFDEGGWDAILLDAPCSATGTIRRHPDLPHAKDGAEFGRLIELQARLLDHALTLL 353

Query: 174 NIGGDFL 180
             GG  +
Sbjct: 354 RPGGRLV 360


>gi|325962895|ref|YP_004240801.1| hemolysin A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468982|gb|ADX72667.1| hemolysin A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 271

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 16  KVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQS-NRRIVDL 74
           KV +     S          D  V+  + + + +R+ +KL    +    ++   +R +D 
Sbjct: 29  KVSSAGQILSKASLQVDDGKDLAVRHDEQDTYVSRAGHKLAGALDAFPAIKPQGKRCLDA 88

Query: 75  GSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLDSWEFIRQAIG 133
           G+S G ++ V  R   ++     V    ++  +     V+  +     L+        IG
Sbjct: 89  GASTGGFTDVLLRRGAAHVVAVDVGHGQLVPQLREDPRVEVHEG----LNVRYMSPADIG 144

Query: 134 GNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
           G  +L ++D+++             +SL       A      GGD ++  
Sbjct: 145 GPAELTVADLSF-------------ISLALVVGPLAECT-EPGGDLVLMV 180


>gi|167534415|ref|XP_001748883.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772563|gb|EDQ86213.1| predicted protein [Monosiga brevicollis MX1]
          Length = 351

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 29/158 (18%)

Query: 66  QSNRRIVDLGSSPGS------------WSQVAARITGSNANNTRVVAIDILDME-PILGV 112
           Q    ++DL ++PG                 A        +  + V ID L       GV
Sbjct: 125 QPGDTVLDLCAAPGGKALILAEQLDGRGHIQANERASGRQSRLQRVMIDYLPERIRHKGV 184

Query: 113 KFFKFDFLDLDSW--EFIRQAIGGNPD-------LVLSDMAYPTIGHRKIDHLRTMSLCE 163
           +    D     +   E   + +   P        + L ++A  +    + +  R + L  
Sbjct: 185 RVTGLDGTRARALGKEQYSKILVDAPCSSDRHVLMDLDELAVWSPTRIRANSKRQIQLLW 244

Query: 164 AATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKK 198
           AA     + L  GG  +            + +  ++K+
Sbjct: 245 AAA----QALKPGGTVVYSTCALSDMENDDVVRTIIKR 278


>gi|74317446|ref|YP_315186.1| arsenite S-adenosylmethyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056941|gb|AAZ97381.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 268

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 26/121 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           LQS   ++DLGS  G  + +AAR  G+  +   V+ +D+                 D+ +
Sbjct: 80  LQSGETVLDLGSGAGFDAFLAARQVGAEGS---VIGVDMTP---------------DMVT 121

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--------ALEMLNIG 176
                   GG  ++         +          +S C              A  +L  G
Sbjct: 122 KARANAVKGGYANVDFRLGEIEHLPVADATVDAIISNCVINLSPDKVQVFREAFRVLKPG 181

Query: 177 G 177
           G
Sbjct: 182 G 182


>gi|73669877|ref|YP_305892.1| hypothetical protein Mbar_A2392 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397039|gb|AAZ71312.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 206

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 16/118 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNA-----NNTRVVAIDILDMEPILGVKFFKFDF 119
           L++    +D+G  PG +S  A+ I G++         + +  D+ +   + G+   K   
Sbjct: 43  LKNGDIFLDMGCGPGDYSFFASTIVGNSGIVYALEKRQDLIDDLTEKADLKGLTNIKGIV 102

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            D+     I +           D+ + +     +D  +  ++        L +L   G
Sbjct: 103 SDITKPLPINE--------CCIDVYFISTVLHALDLAKDSNMI---FDEVLRVLKPDG 149


>gi|50555530|ref|XP_505173.1| YALI0F08701p [Yarrowia lipolytica]
 gi|62900205|sp|Q6C2D9|ERG6_YARLI RecName: Full=Sterol 24-C-methyltransferase; AltName:
           Full=Delta(24)-sterol C-methyltransferase
 gi|49651043|emb|CAG77980.1| YALI0F08701p [Yarrowia lipolytica]
          Length = 381

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 23/133 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +Q   +++D+G   G  ++  AR TG+N     +V ++  D +   G  + +        
Sbjct: 126 IQPGMKVLDVGCGVGGPAREIARFTGAN-----IVGLNNNDYQVERGTHYSEV------- 173

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
                Q  G     V  D           D +  +     A            +L  GG 
Sbjct: 174 -----QGFGDQVTYVKGDFMQMDFPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGV 228

Query: 179 FLVKTFQGGTTND 191
           F V  +      D
Sbjct: 229 FGVYEWVMTDEYD 241


>gi|218232053|ref|YP_002367965.1| hypothetical protein BCB4264_A3259 [Bacillus cereus B4264]
 gi|218160010|gb|ACK60002.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 415

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDLDSWE 126
           R VD+  +      +  R      +  R    +   +       GVK   +   D D   
Sbjct: 135 RHVDVCDANTGPIFLTYRTKDEVKHLIRSWKEEHAPIYTFTAEDGVKHVAWKIADEDVIT 194

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKID----HLRTMSLCEAATFFALEMLNIGGDF--- 179
            +  A    P+L ++D  + +    K+             E    F L +L    +    
Sbjct: 195 SLVNAFEDIPNLYIADGHHRSASAAKVGLMRREQYPNYTGEEEFNFFLSVLFPHDELSIW 254

Query: 180 ----LVKTFQGGTTNDILCLLKKHFQK----VIHVKP 208
               +VK   G +    L  + ++F      V   KP
Sbjct: 255 DYNRVVKDLNGLSEEQFLNQITQYFYVEEAPVSPYKP 291


>gi|308801947|ref|XP_003078287.1| sterol 24-C-methyltransferase (ISS) [Ostreococcus tauri]
 gi|116056738|emb|CAL53027.1| sterol 24-C-methyltransferase (ISS) [Ostreococcus tauri]
          Length = 537

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 25/121 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-------LGVKFFKFD 118
           +   R++D+G   G   +  +  TG+        A  I   E +           F K D
Sbjct: 270 KKGDRVLDVGCGVGGPLREISAFTGAAVTGLNNNAFQIARGETLNRRTGRHDHCGFIKAD 329

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           F+++   +    +  G   +  +  A   +G                      +L  GG 
Sbjct: 330 FMNIPCDD---NSFDGVYQIEATCHAPDAVGCYSEI---------------FRVLKPGGV 371

Query: 179 F 179
           F
Sbjct: 372 F 372


>gi|92113572|ref|YP_573500.1| hemolysin A [Chromohalobacter salexigens DSM 3043]
 gi|91796662|gb|ABE58801.1| hemolysin A [Chromohalobacter salexigens DSM 3043]
          Length = 253

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 44  LEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
            E + +R+  KL  + E   +      ++D+G S G ++  A R   +      V    +
Sbjct: 60  EERYVSRAGLKLEGVLEALNVRFDGMTVLDVGQSTGGFTDCAMRFGAARVVGIEVGHDQL 119

Query: 104 LD-MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
              +     V   +     +++    R+ +         D   P   H  +  +  +S  
Sbjct: 120 APTLREDARVTCLEG----VNARALPRERL---------DALAPEGLHAAVMDVSFISQT 166

Query: 163 EAATFFALEMLNIGGDFL 180
                 A  +L  GG  +
Sbjct: 167 LILPELA-AVLAPGGQLI 183


>gi|15837009|ref|NP_297697.1| hypothetical protein XF0407 [Xylella fastidiosa 9a5c]
 gi|9105245|gb|AAF83217.1|AE003892_2 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 389

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           + + ++DL  + G ++  AA    ++     +    I   +    +   +  FL  D + 
Sbjct: 215 AGKTVLDLCCNTGGFAVYAALRGAADVVGVDIDQDVIQIAKANAKLNSVRPKFLQADIFP 274

Query: 127 FIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           ++R A   G   D+V+ D A  T    +I +     L       AL ++  GG F   + 
Sbjct: 275 YLRDAAVRGDQYDVVILDPAKMTRDRDQIINALKKYLDMN--KLALGVVKKGGLFATFSC 332

Query: 185 QG-GTTNDILCLLKK 198
            G  +    L +L++
Sbjct: 333 TGLISEEQFLEMLRR 347


>gi|71274646|ref|ZP_00650934.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71899641|ref|ZP_00681795.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|170730913|ref|YP_001776346.1| hypothetical protein Xfasm12_1828 [Xylella fastidiosa M12]
 gi|71164378|gb|EAO14092.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71730593|gb|EAO32670.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|167965706|gb|ACA12716.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 389

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           + + ++DL  + G ++  AA    ++     +    I   +    +   +  FL  D + 
Sbjct: 215 AGKTVLDLCCNTGGFAVYAALRGAADVVGVDIDQDVIQIAKANAKLNSVRPKFLQTDIFP 274

Query: 127 FIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           ++R A   G   D+V+ D A  T    +I +     L       AL ++  GG F   + 
Sbjct: 275 YLRDAAVRGDQYDVVILDPAKMTRDRDQIINALKKYLDMN--KLALGVVKKGGLFATFSC 332

Query: 185 QG-GTTNDILCLLKK 198
            G  +    L +L++
Sbjct: 333 TGLISEEQFLEMLRR 347


>gi|311899281|dbj|BAJ31689.1| hypothetical protein KSE_59190 [Kitasatospora setae KM-6054]
          Length = 244

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 25/136 (18%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL--GVKFFKFDFLDLDSWEF 127
           R++D+G   G  + V A   G++A  T +  +D+ D  P      +F + DFLD      
Sbjct: 78  RVLDVGCGRGRQTAVLAERLGADA--TGLDLLDVWDTVPPAAGTARFHQGDFLD------ 129

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF--- 184
                G   DL++ +                     AA   AL  L  GG  +V  F   
Sbjct: 130 ---YRGPAVDLLVDNGCLHHQRREDWPG-------WAAHTRAL--LRPGGSLVVSVFLSP 177

Query: 185 QGGTTNDILCLLKKHF 200
            G  +  +L   + ++
Sbjct: 178 DGEVSEHLLADGRHNW 193


>gi|222109671|ref|YP_002551935.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax ebreus
           TPSY]
 gi|221729115|gb|ACM31935.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax ebreus
           TPSY]
          Length = 427

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 29  WL--NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           WL   R  +  Y +   +   +A+ A KL  I  K  +L+   R +D+G+  G     AA
Sbjct: 132 WLDPRRVYSCAYYRTPDMSLAQAQEA-KLDHICRKL-LLRPGDRFLDIGAGWGGLLLWAA 189

Query: 87  RITGSNANNTRVVAIDILDMEPILGVKFFKF 117
           +  G +A    +       ++ ++  +  + 
Sbjct: 190 QEYGVDATGITLSRNQHAHVQRLIEERGLQG 220


>gi|300213913|gb|ADJ78348.1| nonstructural polyprotein [Ross River virus]
          Length = 2480

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 146  PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
                  +  H +      M L       +L +L  GG  L++ +      +  ++  L +
Sbjct: 1218 NIHTEYRTHHYQQCVDHSMKLQMLGGD-SLHLLKPGGSLLIRAYGYADRVSEMVVTALAR 1276

Query: 199  HFQKVIHVKPVASRAESVEMFLLAKGF 225
             F     ++P A    + E+FLL   F
Sbjct: 1277 KFSAFRVLRP-ACVTSNTEVFLLFTNF 1302


>gi|257786660|gb|ACV67001.1| non-structural polyprotein [Ross River virus]
          Length = 2481

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 146  PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
                  +  H +      M L       +L +L  GG  L++ +      +  ++  L +
Sbjct: 1218 NIHTEYRTHHYQQCVDHSMKLQMLGGD-SLHLLKPGGSLLIRAYGYADRVSEMVVTALAR 1276

Query: 199  HFQKVIHVKPVASRAESVEMFLLAKGF 225
             F     ++P A    + E+FLL   F
Sbjct: 1277 KFSAFRVLRP-ACVTSNTEVFLLFTNF 1302


>gi|257786657|gb|ACV66999.1| non-structural polyprotein [Ross River virus]
          Length = 2481

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 146  PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
                  +  H +      M L       +L +L  GG  L++ +      +  ++  L +
Sbjct: 1218 NIHTEYRTHHYQQCVDHSMKLQMLGGD-SLHLLKPGGSLLIRAYGYADRVSEMVVTALAR 1276

Query: 199  HFQKVIHVKPVASRAESVEMFLLAKGF 225
             F     ++P A    + E+FLL   F
Sbjct: 1277 KFSAFRVLRP-ACVTSNTEVFLLFTNF 1302


>gi|257786654|gb|ACV66997.1| non-structural polyprotein [Ross River virus]
          Length = 2481

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 146  PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
                  +  H +      M L       +L +L  GG  L++ +      +  ++  L +
Sbjct: 1218 NIHTEYRTHHYQQCVDHSMKLQMLGGD-SLHLLKPGGSLLIRAYGYADRVSEMVVTALAR 1276

Query: 199  HFQKVIHVKPVASRAESVEMFLLAKGF 225
             F     ++P A    + E+FLL   F
Sbjct: 1277 KFSAFRVLRP-ACVTSNTEVFLLFTNF 1302


>gi|257786645|gb|ACV66991.1| non-structural polyprotein [Ross River virus]
          Length = 2493

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 146  PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
                  +  H +      M L       +L +L  GG  L++ +      +  ++  L +
Sbjct: 1218 NIHTEYRTHHYQQCVDHSMKLQMLGGD-SLHLLKPGGSLLIRAYGYADRVSEMVVTALAR 1276

Query: 199  HFQKVIHVKPVASRAESVEMFLLAKGF 225
             F     ++P A    + E+FLL   F
Sbjct: 1277 KFSAFRVLRP-ACVTSNTEVFLLFTNF 1302


>gi|80973275|gb|ABB53380.1| nonstructural polyprotein [Ross River virus]
 gi|257786648|gb|ACV66993.1| non-structural polyprotein [Ross River virus]
 gi|257786651|gb|ACV66995.1| non-structural polyprotein [Ross River virus]
 gi|257786663|gb|ACV67003.1| non-structural polyprotein [Ross River virus]
          Length = 2481

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 146  PTIGHRKIDHLRT-----MSLCEAATFFALEMLNIGGDFLVKTFQGGT--TNDILCLLKK 198
                  +  H +      M L       +L +L  GG  L++ +      +  ++  L +
Sbjct: 1218 NIHTEYRTHHYQQCVDHSMKLQMLGGD-SLHLLKPGGSLLIRAYGYADRVSEMVVTALAR 1276

Query: 199  HFQKVIHVKPVASRAESVEMFLLAKGF 225
             F     ++P A    + E+FLL   F
Sbjct: 1277 KFSAFRVLRP-ACVTSNTEVFLLFTNF 1302


>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
 gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
          Length = 449

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP-----------ILGVKF 114
           +    ++D+ ++PG  S   A +     N+ +V+A+D    +            I  +  
Sbjct: 254 EEGETVLDMCAAPGGKSTFLAELMH---NSGKVIAVDRYPNKCRTIRERASQMAISVITT 310

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC---EAATFFALE 171
              D  ++ +     + +   P      +A       K++  +   L    E+    A  
Sbjct: 311 IDSDARNVPAGISPAKILLDAPCSGTGVLARRPELRWKMNREKITQLVALQESLLNHAAT 370

Query: 172 MLNIGGDFLVKTFQGGTTNDILC 194
           +L  GG  +  T       ++L 
Sbjct: 371 LLPAGGVLVYSTCSIEEEENMLQ 393


>gi|294101847|ref|YP_003553705.1| hemolysin A [Aminobacterium colombiense DSM 12261]
 gi|293616827|gb|ADE56981.1| hemolysin A [Aminobacterium colombiense DSM 12261]
          Length = 271

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           W +R AYKLL+  E   +    +  +DLG+S G ++ V            RV A+D+
Sbjct: 63  WVSRGAYKLLRALEVFSVDPKGKVCMDLGASTGGFTDVLLARGAR-----RVYAVDV 114


>gi|270292469|ref|ZP_06198680.1| NOL1/NOP2/sun family protein [Streptococcus sp. M143]
 gi|270278448|gb|EFA24294.1| NOL1/NOP2/sun family protein [Streptococcus sp. M143]
          Length = 434

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFL 120
               +++DL ++PG  S Q+AA +       +  ++     +        G        +
Sbjct: 90  SPGMKVLDLAAAPGGKSTQLAAYLANQGVLVSNEISSKRAKILVENMERFGATNV---VV 146

Query: 121 DLDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFA 169
             +S + + +   G  D+++ D               + +   D+     SL       A
Sbjct: 147 TNESADRLAKVFKGYFDVIVLDAPCSGEGMFRKQPDAMDYWSTDYPSQCASLQREILEDA 206

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 207 VTMLAEGGRLV 217


>gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
           DSM 20583]
 gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
           DSM 20583]
          Length = 454

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQV-AARITGSNANNTRVVAIDILDM-------EPILGVKFFKF 117
           +    ++DL ++PG  +   A ++ G+   + R ++    D+       +  L V   + 
Sbjct: 255 KEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLIRENAIRQNFLNVVVTEK 314

Query: 118 DFL--DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---ALEM 172
           D    D +S+E     I   P   L  +   T     I       L          A   
Sbjct: 315 DATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQNGIAELVNLQRKILEQASTY 374

Query: 173 LNIGGDFL 180
           +  GG  +
Sbjct: 375 VKPGGTLI 382


>gi|160936945|ref|ZP_02084309.1| hypothetical protein CLOBOL_01834 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440135|gb|EDP17882.1| hypothetical protein CLOBOL_01834 [Clostridium bolteae ATCC
           BAA-613]
          Length = 260

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-------EPILG-VK 113
             +++   +++DLG+  G    +    T  +      +  +  DM         + G V 
Sbjct: 55  FAVVKKGEKVLDLGTGTGIIPILLTAKTEGSHFTGLEIQEESADMARRSVAYNHLEGKVD 114

Query: 114 FFKFDFLDLDSWEFIRQA---IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
               D ++      +          P +  S         + I         E       
Sbjct: 115 IVTGDIVEASRLFALASFDVVTTNPPYMNESHGLKNPGDAKAIARHEVKCTLEDVVREGT 174

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCLLKKH---FQKVIHVKPVASR 212
            +L  GG F     +     +I+ ++K+H    +++  V P A R
Sbjct: 175 RVLKPGGRFF-MVHRPRRLIEIITVMKRHGLEPKRMKMVHPYADR 218


>gi|28199542|ref|NP_779856.1| hypothetical protein PD1665 [Xylella fastidiosa Temecula1]
 gi|182682279|ref|YP_001830439.1| oxidoreductase [Xylella fastidiosa M23]
 gi|28057657|gb|AAO29505.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632389|gb|ACB93165.1| oxidoreductase [Xylella fastidiosa M23]
 gi|307578556|gb|ADN62525.1| oxidoreductase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 389

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
           + + ++DL  + G ++  AA    ++     +    I   +    +   +  FL  D + 
Sbjct: 215 AGKTVLDLCCNTGGFAVYAALRGAADVVGVDIDQDVIQIAKANAKLNSVRPKFLQTDIFP 274

Query: 127 FIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           ++R A   G   D+V+ D A  T    +I +     L       AL ++  GG F   + 
Sbjct: 275 YLRDAAVRGDQYDVVILDPAKMTRDRDQIINALKKYLDMN--KLALGVVKKGGLFATFSC 332

Query: 185 QG-GTTNDILCLLKK 198
            G  +    L +L++
Sbjct: 333 TGLISEEQFLEMLRR 347


>gi|229917009|ref|YP_002885655.1| methyltransferase type 11 [Exiguobacterium sp. AT1b]
 gi|229468438|gb|ACQ70210.1| Methyltransferase type 11 [Exiguobacterium sp. AT1b]
          Length = 209

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 30/155 (19%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           + Q++     +Q    +++LG   G       +            +  ILD         
Sbjct: 41  IEQLD-----IQPGTTVLELGCGAGDAMATILQRHPDVHVMGLDRSKTILDSARQRNHDS 95

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSL------CEAATFF 168
            +                     L+  D+    +    ++H+ ++               
Sbjct: 96  MQT----------------KRAKLIQGDLHQFEMMDASVNHVFSVHTLYFWRDVTTVLSE 139

Query: 169 ALEMLNIGGDFLVKTFQGGTT---NDILCLLKKHF 200
              +L   G F++    G      NDI  +++  F
Sbjct: 140 IERVLKPNGTFVITYCDGKGDVEWNDISDMIRNQF 174


>gi|218245211|ref|YP_002370582.1| type 11 methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165689|gb|ACK64426.1| Methyltransferase type 11 [Cyanothece sp. PCC 8801]
          Length = 283

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 33/186 (17%)

Query: 24  GSSRDWLN---RHINDPYVQRAQLEGWRARS-AYKL----LQINEKHQIL-----QSNRR 70
            SS  W      H++          G+  RS  YK+     QI+   ++L     ++   
Sbjct: 15  ASSELWEKIWGEHMH---------HGYYGRSGNYKINRRQAQIDLIEELLIWAKIKTVEN 65

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           ++D+G   G  +   A    + A    +  +              +   L   +      
Sbjct: 66  LIDVGCGIGGSTLYLAEKFNAKATGITLSPVQASRATERAKNANLQETVLFQVADAQNMP 125

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
               N DLV S  +   +  +                    +L  GG F+  T+   +TN
Sbjct: 126 FPDNNFDLVWSLESGEHMPDK--TQFLQE---------CYRVLKPGGTFIFATWCHRSTN 174

Query: 191 DILCLL 196
            +   L
Sbjct: 175 SLAGEL 180


>gi|85059932|ref|YP_455634.1| putative RNA 2'-O-ribose methyltransferase [Sodalis glossinidius
           str. 'morsitans']
 gi|123518930|sp|Q2NRJ6|RLMM_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|84780452|dbj|BAE75229.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 42/178 (23%)

Query: 37  PYV----QRAQLEGWRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVA 85
           P+     +        +RS  KL +        +E  + L S    VDLG+ PG W+   
Sbjct: 170 PFYMGIPRLRFPPDAPSRSMLKLEEAFHVFIPADEWDERLGSGMYAVDLGACPGGWTYQL 229

Query: 86  ARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
            +       +  V A+D   M+            +   +  F  +    N   ++ DM  
Sbjct: 230 VKR------SMMVHAVDNGTMDE---ALMATGQVIHHRADGFRFEPPRNNVYWLVCDMVE 280

Query: 146 PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKV 203
                                  A + L   G      F      ++   +KK +++V
Sbjct: 281 KPS---------------RVAQLAADWLVK-GWCREAIF------NLKLPMKKRYEEV 316


>gi|296166620|ref|ZP_06849048.1| oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898023|gb|EFG77601.1| oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 360

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDLDS 124
              +++L        Q+A  +  ++   + V A+     +P      +++    FL L  
Sbjct: 11  GDHVLEL--------QIAEVVAETDDARSLVFAVPDEPGDPGIPPERLRYAPGQFLTLRV 62

Query: 125 WEFIRQAIGGNPDLVLS---DMAYPTIGHRKIDHLRTMSLCEAA-TFFALEMLNIGGDFL 180
                 ++     L  S   D A      R  D   +  LCE A T   + +L   G+F+
Sbjct: 63  PSERTGSVARCYSLCSSPFTDDALTVTVKRTADGYASNWLCEHARTGMRIHVLAPSGNFV 122

Query: 181 VKTFQ 185
            KT  
Sbjct: 123 PKTLD 127


>gi|317152934|ref|YP_004120982.1| hemolysin A [Desulfovibrio aespoeensis Aspo-2]
 gi|316943185|gb|ADU62236.1| hemolysin A [Desulfovibrio aespoeensis Aspo-2]
          Length = 249

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 29/137 (21%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID---- 102
           + +R A+KLL   E+  +  +    +D G+S G ++    +         RV A D    
Sbjct: 64  YVSRGAHKLLTAIEEFGLDFAGAVALDAGASTGGFTDCLLQ-----HGAVRVYAADVGYG 118

Query: 103 --ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS 160
                +     V   +      +        I    D+V++D++             +++
Sbjct: 119 QLHEKLRQDARVINLE----RTNVRHAGPDLIPEPVDVVVADVS-----------FISLT 163

Query: 161 LCEAATFFALEMLNIGG 177
               A    L+ L  GG
Sbjct: 164 KILPA---CLQFLRPGG 177


>gi|159898196|ref|YP_001544443.1| NAD-dependent epimerase/dehydratase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891235|gb|ABX04315.1| NAD-dependent epimerase/dehydratase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 349

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSWEF 127
           RR V +  + G W +  AR   +     RV+ +DI   E PI GV++ + D  +    E 
Sbjct: 3   RRTVLITGAAGRWGRRLARQL-AKFPIVRVIGLDITPPERPIDGVEYIQADLRNPLLVEL 61

Query: 128 IR 129
           +R
Sbjct: 62  LR 63


>gi|317032984|ref|XP_001394683.2| hypothetical protein ANI_1_2208094 [Aspergillus niger CBS 513.88]
          Length = 201

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 37/148 (25%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNT---------RVVAIDI----LDMEPILGVKFFKF 117
           I D+G   G W Q  A+   S    +          +V  D+        P  G+   + 
Sbjct: 57  IADIGCGTGIWLQEVAQSLQSPGGASASPTTTTLPSLVGFDLNAAAFPENPTPGIHLVQH 116

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D                 P        +  +  R + +  T      A   AL +L  GG
Sbjct: 117 DCT--------------KPFDARYHGQFDLVNIRGLAYAITEEKLSRALDNALLLLRPGG 162

Query: 178 DF--------LVKTFQGGTTNDILCLLK 197
                     L K F    T D+L  ++
Sbjct: 163 YLQWTESEARLFKVF--PETPDMLKAME 188


>gi|225573357|ref|ZP_03782112.1| hypothetical protein RUMHYD_01549 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039270|gb|EEG49516.1| hypothetical protein RUMHYD_01549 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 14/131 (10%)

Query: 57  QINEKHQILQS-----NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILG 111
           QIN+   IL+        R++D+G   G   + AA+  G +     +             
Sbjct: 158 QINKVDHILEKLHLEKGMRLLDIGCGWGFLLKRAAKKYGVHGVGITLSEEQKKK------ 211

Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
              F+ D +     + +   +    +L  S M +  +    +         E        
Sbjct: 212 ---FQEDIVREGMTDLLEVRLLDYRELEKSGMEFDRVVSVGMIEHVERGNYERFMRNVDA 268

Query: 172 MLNIGGDFLVK 182
           +L  GG FL+ 
Sbjct: 269 VLTPGGLFLLH 279


>gi|134079373|emb|CAK97002.1| unnamed protein product [Aspergillus niger]
          Length = 300

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 37/148 (25%)

Query: 71  IVDLGSSPGSWSQVAARITGSNANNT---------RVVAIDI----LDMEPILGVKFFKF 117
           I D+G   G W Q  A+   S    +          +V  D+        P  G+   + 
Sbjct: 57  IADIGCGTGIWLQEVAQSLQSPGGASASPTTTTLPSLVGFDLNAAAFPENPTPGIHLVQH 116

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D                 P        +  +  R + +  T      A   AL +L  GG
Sbjct: 117 DCT--------------KPFDARYHGQFDLVNIRGLAYAITEEKLSRALDNALLLLRPGG 162

Query: 178 DF--------LVKTFQGGTTNDILCLLK 197
                     L K F    T D+L  ++
Sbjct: 163 YLQWTESEARLFKVF--PETPDMLKAME 188


>gi|32477611|ref|NP_870605.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|32448165|emb|CAD77682.1| probable methyltransferase [Rhodopirellula baltica SH 1]
          Length = 275

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
             R++DLG  P   + +         +   +      + +  +    F  D L+L S+E 
Sbjct: 67  GPRVIDLGCGPAGIALMLGERWRELEDAGGLSQSSFAEGQLQIMAVDFSVDMLELASFEI 126

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE-------AATFFALEMLNIGG-DF 179
               +     L   D+  P      +      +               A+  L  GG  F
Sbjct: 127 ELNGMQDLVWLQQIDLTDPESLQEDLAQTIISNTVFHHLPDPITGIQVAMRALMPGGRIF 186

Query: 180 LVKTFQGGTTNDILCLLKKH 199
           +   F+ G+ +++  L+++H
Sbjct: 187 IRDLFRPGSEDEVERLVEEH 206


>gi|115380177|ref|ZP_01467206.1| CalE5 [Stigmatella aurantiaca DW4/3-1]
 gi|310820596|ref|YP_003952954.1| type 11 methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115362819|gb|EAU62025.1| CalE5 [Stigmatella aurantiaca DW4/3-1]
 gi|309393668|gb|ADO71127.1| Methyltransferase type 11 [Stigmatella aurantiaca DW4/3-1]
          Length = 258

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFD 118
           LQ   +++D G  PG  + + A + G +   T V      +A        +    F + D
Sbjct: 28  LQPGMKVLDAGCGPGVVTSILAELVGPSGKVTGVDFNAPRLAEARATCASLPQCHFLQAD 87

Query: 119 FLDLD 123
               D
Sbjct: 88  IRSTD 92


>gi|37521052|ref|NP_924429.1| methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35212048|dbj|BAC89424.1| gll1483 [Gloeobacter violaceus PCC 7421]
          Length = 217

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 17/139 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L +   ++DL   PG  ++  A          R           + G  F +        
Sbjct: 52  LSAASSVLDLCCGPGGATRYLAATGARVTGLDRSEGSLRHARARVPGAHFVQG------- 104

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
                +A          D+ + ++   +++  +  ++          +L  GG F +  +
Sbjct: 105 -----RAEAMPFAGASFDLVHTSVALHEMEPTQRRTIIREVL----RVLKPGGTFALIDY 155

Query: 185 QGGTTNDILCLLKKHFQKV 203
               TN +       F  V
Sbjct: 156 H-RPTNPLYWPGLALFLWV 173


>gi|156932717|ref|YP_001436633.1| putative RNA 2'-O-ribose methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|166199437|sp|A7MR02|RLMM_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|156530971|gb|ABU75797.1| hypothetical protein ESA_00505 [Cronobacter sakazakii ATCC BAA-894]
          Length = 366

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWSQVAARIT 89
             +RS  KL +        +E  + L +    VDLG+ PG W+    +  
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRN 233


>gi|229133600|ref|ZP_04262427.1| hypothetical protein bcere0014_25190 [Bacillus cereus BDRD-ST196]
 gi|228650000|gb|EEL06008.1| hypothetical protein bcere0014_25190 [Bacillus cereus BDRD-ST196]
          Length = 211

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 4/135 (2%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDFLDLDSW 125
                + +  + G   +             R++  +  +M      ++  + D  D    
Sbjct: 2   KATNKIAILGANGKVGKYLVNQALEKGYQVRILTRNSKNMTITNENIETIRGDARDFSV- 60

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             I++ + G   ++ +        +      + +            +L  GG   VK  Q
Sbjct: 61  --IQELLQGCKAVINAVGQPKNEPYIFSTVTKHILKVMKEYEMKRYILISGGSLNVKGDQ 118

Query: 186 GGTTNDILCLLKKHF 200
            G  N I   L + F
Sbjct: 119 KGIANKIGANLFRLF 133


>gi|226311249|ref|YP_002771143.1| hypothetical protein BBR47_16620 [Brevibacillus brevis NBRC 100599]
 gi|226094197|dbj|BAH42639.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 283

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 11/113 (9%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFI 128
           + ++D+G   G           +     +++ IDI+      G +F K   LD      +
Sbjct: 60  KTVLDIGCGGGG-----KTCYYATFEPKKMIGIDIVPHYADEGNEFAKKKGLD----HLV 110

Query: 129 RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
               G    +   D  + TI              E        +L  GG   +
Sbjct: 111 SFMTGDAARMDFPDNTFDTIIMNDAMEHVGEP--EKTLEECFRVLKPGGHLYI 161


>gi|51473737|ref|YP_067494.1| hemolysin [Rickettsia typhi str. Wilmington]
 gi|51460049|gb|AAU04012.1| hemolysin [Rickettsia typhi str. Wilmington]
          Length = 251

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGS 91
           H  D  V+  Q   + +R A KL+   +  +I  +N   +D+GSS G +++V      +
Sbjct: 48  HDQDIKVKLPQ-HNYVSRGALKLITALDYFKIEPTNLVCIDIGSSTGGFTEVLFERKAA 105


>gi|313887823|ref|ZP_07821503.1| methyltransferase domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846166|gb|EFR33547.1| methyltransferase domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 275

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 9/143 (6%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-PILGVKFFKFDF 119
           ++  +      +D+G   G+ +   A+          +V  DI      +   K    D 
Sbjct: 100 QYVEIPDGGVGLDVGCGSGALTIACAKRN----LKATMVGCDIWSGSYKVEFSKKICEDN 155

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
              +    +R   G    L   D ++  +    + H       +      L +L  GG F
Sbjct: 156 AKAEGVSNVRFEEGNAVKLPFEDESFDVVTSNYVYHNIMGHNKQKLILETLRVLKKGGVF 215

Query: 180 ----LVKTFQGGTTNDILCLLKK 198
               L+K    G     +  LKK
Sbjct: 216 AIHDLIKKSNYGDIEKFIEELKK 238


>gi|302509432|ref|XP_003016676.1| TAM domain methyltransferase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291180246|gb|EFE36031.1| TAM domain methyltransferase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 383

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 23/127 (18%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFD 118
              L +  R++D+G+  G W    A I      + +++  D+  ++P      V+FF   
Sbjct: 133 FAPLDNPERVLDIGTGSGIWPIEMAEIFP----DAQIIGTDLSPVQPGQVPPNVQFFV-- 186

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
               D+ E        + D + S M         ++  +++         A   L  GG 
Sbjct: 187 ---DDAQEEDWLWPKDHFDYIRSSML-----LGALNSYKSL------INTARTYLKPGGY 232

Query: 179 FLVKTFQ 185
                + 
Sbjct: 233 MECHEWD 239


>gi|329851870|ref|ZP_08266551.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Asticcacaulis biprosthecum C19]
 gi|328839719|gb|EGF89292.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Asticcacaulis biprosthecum C19]
          Length = 405

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 18/116 (15%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+  + ++++G   G ++Q AA + G+     RV  + I   +    ++  +   L    
Sbjct: 186 LKPGQHVLEIGCGWGGFAQYAAEVIGA-----RVTGLTISPAQRDYAIERMERLGLSDKV 240

Query: 125 WEFI---RQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
              +   R   G    +V  +M           +   +           ++L  GG
Sbjct: 241 DIQLKDYRDVEGQYDAVVSIEMFEAVGEAYWKTYFNKLH----------DVLKTGG 286


>gi|288958027|ref|YP_003448368.1| RNA 2'-O-ribose methyltransferase [Azospirillum sp. B510]
 gi|288910335|dbj|BAI71824.1| RNA 2'-O-ribose methyltransferase [Azospirillum sp. B510]
          Length = 303

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 48  RARSAYKLLQINEKHQILQ-SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
             R+  KL +             R +DLG+ PG W+ V   +  S      VV++D   +
Sbjct: 149 PNRAYLKLWEALTLFGEQPGPGDRCLDLGACPGGWTWVLHELGAS------VVSVDKAPL 202

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC 162
           +P +     + +     ++     A+G    L    + YPT   R +       L 
Sbjct: 203 DPAIAA-LPRVEIRQESAFGLKPAAVGPVDWLCCDVICYPTRLLRLVTEWMESGLA 257


>gi|114570061|ref|YP_756741.1| type 11 methyltransferase [Maricaulis maris MCS10]
 gi|114340523|gb|ABI65803.1| Methyltransferase type 11 [Maricaulis maris MCS10]
          Length = 208

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 29/160 (18%)

Query: 27  RDWL----NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS 82
           + W      ++ NDP    A +E W     +KL +I +K   L ++ R+++ G   G   
Sbjct: 5   QRWWDKIAEKYSNDP---IADVESWE----FKLAKIRDK---LTADSRLLEFGCGTGG-- 52

Query: 83  QVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
             A R+  +  +   ++A DI  +M  I   +       D +    IR   G   +L L 
Sbjct: 53  -TARRLANAAGS---ILATDISGEMLRIAEAR------GDEEGVTNIRYQRGDFVELDLP 102

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           +  +  +    I HL      +AA   A+ +L  GG F+ 
Sbjct: 103 EGEFDMVLGMSILHLLEDR--QAAMDKAMRLLKPGGVFIT 140


>gi|254519240|ref|ZP_05131296.1| sun protein [Clostridium sp. 7_2_43FAA]
 gi|226912989|gb|EEH98190.1| sun protein [Clostridium sp. 7_2_43FAA]
          Length = 439

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 19/132 (14%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILGVKFFK 116
           L+   +++DL ++PG  +   A +  ++     V+A D        I +    LG+    
Sbjct: 245 LKEGDKVLDLCAAPGGKTTHIAELLANSGE---VLAFDLHENKLSLIEENAKRLGLNNIV 301

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAY-----PTIGHRKIDHLRTMSLC---EAATFF 168
              +D         + G    + +                     +   L          
Sbjct: 302 CKAMDATKLNSDYISYGDKVLIDVPCSGLGIIRKKPEIKWNKTRQQLKDLVPIQREIMEN 361

Query: 169 ALEMLNIGGDFL 180
           A + L  GG  +
Sbjct: 362 AWQYLKPGGTLV 373


>gi|149184704|ref|ZP_01863022.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21]
 gi|148832024|gb|EDL50457.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21]
          Length = 393

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 25/154 (16%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEPILGVKFFKFD 118
               ++DL +  G  +   A    +  N  R++A D        +       G    +  
Sbjct: 201 PGETVIDLCAGGGGKTLALA---AAMDNLGRLIASDADRGRLSRLAPRAERAGATIIETR 257

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR-----------KIDHLRTMSLCEAATF 167
            L+          + G  D V+ D      G             + +  R  +L      
Sbjct: 258 LLNPKREFEALADLEGQADAVMIDAPCSGTGTWRRNPEARWRLDEAELARLTALQSELLD 317

Query: 168 FALEMLNIGGDFL---VKTFQGGTTNDILCLLKK 198
            A  ++  GG  +                  LK+
Sbjct: 318 LATRLVKPGGRIIYVTCSLLDEEGAGQFEAFLKR 351


>gi|116536737|ref|YP_803213.1| replicase polyprotein 1ab [White bream virus]
 gi|115432780|gb|ABI97394.1| replicase polyprotein 1ab [White bream virus]
          Length = 6872

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 18/95 (18%)

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGG--TTN 190
                  +LSD+  P      +           A  +    L +GG  + K  +      N
Sbjct: 6720 EWKAHFILSDVYAPDTDFTSL-----------ALEYMQNHLRLGGSIMWKMTETSILQVN 6768

Query: 191  DILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
            +I+      ++ V      A    S E FL   G+
Sbjct: 6769 EIVKYFGS-WKAVTF----AVNYSSSETFLFCAGY 6798


>gi|9695423|ref|NP_054714.1| large protein [Mumps virus]
 gi|401032|sp|P30929|L_MUMPM RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|222146|dbj|BAA01432.1| L protein [Mumps virus]
 gi|7592778|dbj|BAA94391.1| large protein [Mumps virus]
          Length = 2261

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 118  DFLDLDSW---EFIRQAIGGNPDLVLS-DMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
            D  DL +    E+I   +G +   ++  D+         +     +     A    + +L
Sbjct: 1889 DITDLSTKTSVEYIIHKVGADTCALVHVDLEGVPGSMNSMLERAQVH----ALLITVTVL 1944

Query: 174  NIGGDFLVKTFQGG--TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
              GG  ++K         + +L +L +    +  ++   S   + E++++A 
Sbjct: 1945 KPGGLLILKASWEPFNRFSFLLTILWQFSSTIRILRSSYSDPNNHEVYIIAT 1996


>gi|242240408|ref|YP_002988589.1| RNA 2'-O-ribose methyltransferase [Dickeya dadantii Ech703]
 gi|269969526|sp|C6CC07|RLMM_DICDC RecName: Full=Ribosomal RNA large subunit methyltransferase M;
           AltName: Full=23S rRNA 2'-O-ribose methyltransferase
           rlmM
 gi|242132465|gb|ACS86767.1| putative RNA 2'-O-ribose methyltransferase [Dickeya dadantii
           Ech703]
          Length = 366

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 23/151 (15%)

Query: 47  WRARSAYKLLQI-------NEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRV 98
             +RS  KL +        +E  + L S    VDLG+ PG W+ Q+  R    +A +  +
Sbjct: 184 APSRSTLKLEEAFHVFIPADEWDERLGSGMYAVDLGACPGGWTYQLVKRSMMVHAVDNGM 243

Query: 99  VAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHRKID 154
           +A  ++D      V   + D    +        +       P  V S MA   +     +
Sbjct: 244 MAQSLMDTGQ---VIHHQADGFRFEPPRNNIYWLVCDMVEKPAKVTSRMADWLVNGWCRE 300

Query: 155 HLRTMSL--------CEAATFFALEMLNIGG 177
            +  + L                 + L  GG
Sbjct: 301 AIFNLKLPMKKRYEEVALNLEKLTQRLQEGG 331


>gi|229550555|ref|ZP_04439280.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus
           faecalis ATCC 29200]
 gi|229304274|gb|EEN70270.1| cyclopropane-fatty-acyl-phospholipid synthase [Enterococcus
           faecalis ATCC 29200]
          Length = 422

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 26/181 (14%)

Query: 18  KNRSCQGSSRDWLNRHI---NDPYVQRAQLEGWRARSAYK-----LLQ--INEKHQIL-- 65
           K    +  S++ ++ H    ND Y +        + + +K     L Q  +N+ H IL  
Sbjct: 136 KESHSKKRSQEDIHSHYDLGNDFYKKWLDQTMTYSCAYFKTPEDTLEQAQVNKVHHILDK 195

Query: 66  ---QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
              +    ++D+G   G+    A +  G+ A    +       +  I+  +  + D + +
Sbjct: 196 LFIKEGDTLLDIGCGWGTLILTAVKEYGAKATGITLSEEQFHHIRHIIEKEGIQ-DRMTV 254

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
              ++ R   GG+ D + S   +  +G   +                   L   G  L+ 
Sbjct: 255 KLMDY-RDLKGGSFDHITSAGMFEHVGAENLHEY---------FDVVQRNLAPKGTALIH 304

Query: 183 T 183
            
Sbjct: 305 G 305


>gi|256424267|ref|YP_003124920.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
 gi|256039175|gb|ACU62719.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 275

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 17/127 (13%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           L+Q     + L  N  + D+G  PG +S   A+          V+  D     P+     
Sbjct: 39  LIQ-----RFLPKNGVVADVGGGPGVYSAWMAKAGYE------VILFD-----PVPKHIE 82

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK-IDHLRTMSLCEAATFFALEML 173
                         +  +G    L L D +         + HL+      AA   A  +L
Sbjct: 83  QATKKAAKFKKNPFKAILGEARKLDLPDASVDVAILHGPLYHLQEKQDRIAALREAYRIL 142

Query: 174 NIGGDFL 180
             GG  L
Sbjct: 143 KPGGVLL 149


>gi|157738061|ref|YP_001490745.1| hemolysin A [Arcobacter butzleri RM4018]
 gi|157699915|gb|ABV68075.1| hemolysin A [Arcobacter butzleri RM4018]
          Length = 232

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 47  WRARSAYKLL-QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-IL 104
           + +R+AYKL   + E       ++  +D+GSS G ++Q+             V       
Sbjct: 52  YVSRAAYKLKFFLQELKNFDLKDKNALDIGSSTGGFTQILLENEIKKVTCVDVGTNQLHE 111

Query: 105 DMEPILGVKFF-KFDFLDLDSWEF 127
            ++    + FF   D  + +S E 
Sbjct: 112 RIKYNDKINFFENTDIRNFESDEI 135


>gi|148227140|ref|NP_001090297.1| NOP2/Sun domain family, member 6 [Xenopus laevis]
 gi|114108045|gb|AAI23126.1| MGC154309 protein [Xenopus laevis]
          Length = 467

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 26/160 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV--VAIDILDMEPILGV------KFFKF 117
           Q   RI+D+ ++PG  +   A +         +  +A  +  ++    V      K F F
Sbjct: 233 QPGERILDMCAAPGGKTTHIATLMEDQGEVIALDKIASKVEKIKQNASVLKLKCIKAFCF 292

Query: 118 DFLDLDSWEFIRQAIGGNPDLV------------LSDMA--YPTIGHRKIDHLRTMS-LC 162
           +       +      G  P                S M      +    +  L +   L 
Sbjct: 293 NSTKAVRDQNCPDEQGDGPPFFPESFDRILLDAPCSGMGQRPNMVCPFSLKELTSYQPLQ 352

Query: 163 EAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
                 A+E+L  GG  +              +   LK  
Sbjct: 353 RKLFSAAVELLRPGGTLVYSTCTVTLSENEEQVAWALKTF 392


>gi|294508496|ref|YP_003572554.1| methyltransferase [Salinibacter ruber M8]
 gi|294344825|emb|CBH25603.1| methyltransferase [Salinibacter ruber M8]
          Length = 713

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 40/123 (32%), Gaps = 26/123 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV--------AIDILDMEPILGVKFFK 116
           LQ   R++DLGS  G  + VA R  G + +   V         A    D      V F  
Sbjct: 514 LQPGERVLDLGSGAGMDAFVARRTVGPDGHVHGVDFAEEMVAKARANADTLDYDNVTFEV 573

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D   L           G  D+VLS+     +  +           EAA       L  G
Sbjct: 574 GDIEALPV-------ESGAFDVVLSNCVLNLVPDK-----------EAAFAQMHRALRPG 615

Query: 177 GDF 179
           G F
Sbjct: 616 GRF 618


>gi|87309024|ref|ZP_01091162.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Blastopirellula
           marina DSM 3645]
 gi|87288367|gb|EAQ80263.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Blastopirellula
           marina DSM 3645]
          Length = 262

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+   R++++G   G+     A++ G      +V+ +DI   M+ +   K  K D  D  
Sbjct: 83  LKPGDRVLEIGFGTGNSMIDLAKLVGPTG---KVIGVDISPGMQKVAEKKIAKTDLGD-- 137

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
               I   IG   +L     ++          L   S   +     L+ L  GG
Sbjct: 138 ---QIELHIGDARNLDFPPNSFDAAFMSFTLELFDESDIPSVLGEILKALKPGG 188


>gi|46126565|ref|XP_387836.1| hypothetical protein FG07660.1 [Gibberella zeae PH-1]
          Length = 331

 Score = 36.8 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
              +R++DLG+  G W    A           VV ID+  ++P      V+F   D  D 
Sbjct: 92  SKVKRVLDLGTGTGIW----AIDFADEHPEAEVVGIDLSPIQPAFVPPNVRFIIDDIDDE 147

Query: 123 DSWEF 127
            ++  
Sbjct: 148 WTYAE 152


>gi|110277465|gb|ABG57185.1| phosphoethanolamine N-methyltransferase [Salicornia europaea]
          Length = 494

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 31/135 (22%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME---------PILGVKFFKFD 118
            + +++LG+  G ++   A   G       V+A+D +D               VKF   D
Sbjct: 57  GKCVLELGAGIGRFTGELAEKAGQ------VIALDFIDKAIKKNEYIDGHYKNVKFMCAD 110

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
                        +   P+      +   I    +    +    E      L+ L  GG+
Sbjct: 111 VTSPT--------LNFPPN------SLDVIFSNWLLMYLSDEEVEHLVERMLKWLKPGGN 156

Query: 179 --FLVKTFQGGTTND 191
             F    F     + 
Sbjct: 157 IFFRESCFHQSGDHK 171


>gi|302556659|ref|ZP_07309001.1| methyltransferase type 11 [Streptomyces griseoflavus Tu4000]
 gi|302474277|gb|EFL37370.1| methyltransferase type 11 [Streptomyces griseoflavus Tu4000]
          Length = 262

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 26/134 (19%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAID--ILDMEPI--LGVKFFKFDFLDLDSW 125
            +VD+G   G       R    + +  R++ +D  I  +      GV   + D       
Sbjct: 48  TVVDVGCGTG----ALLRRCAESGHAGRLIGVDTSIASVRATGGKGVTALQGD------A 97

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
             +         L+   M Y                 E A   A  +L  GG  +V    
Sbjct: 98  CALPLRTRSVDCLMERHMLYHVTD------------VERALREARRVLRPGGTLVVVLNM 145

Query: 186 GGTTNDILCLLKKH 199
            GTT  +  +L+  
Sbjct: 146 RGTTPRLARMLRAC 159


>gi|213424333|pdb|3ELD|A Chain A, Wesselsbron Methyltransferase In Complex With Sinefungin
 gi|213424375|pdb|3ELU|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
 gi|213424403|pdb|3ELW|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
           And Gpppg
 gi|213424404|pdb|3ELY|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adohcy
 gi|213424408|pdb|3EMB|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
           And 7megpppg
 gi|213424409|pdb|3EMD|A Chain A, Wesselsbron Virus Methyltransferase In Complex With
           Sinefungin And 7megpppa
          Length = 300

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 10/175 (5%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R A K+  ++E+   L+   R++DLG   G WS  AA      +       + I   E 
Sbjct: 64  SRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKG--YTLGIEGHEK 120

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            + ++   ++ +       +        D +L D+   +     ++  RTM         
Sbjct: 121 PIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESSSN-PLVERDRTMK-VLENFER 178

Query: 169 ALEMLNIGGDFLVKTFQ--GGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              +     +F VK          + L  L+  F   I   P  SR  + EM+ +
Sbjct: 179 WKHVNTE--NFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPF-SRNSTHEMYYI 230


>gi|313664984|ref|YP_004046855.1| ribosomal RNA large subunit methyltransferase J [Mycoplasma leachii
           PG50]
 gi|312949495|gb|ADR24091.1| ribosomal RNA large subunit methyltransferase J [Mycoplasma leachii
           PG50]
          Length = 269

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           + +R+  KL +   K  I  +N+  +D+G+S G ++Q       +       V  D L  
Sbjct: 60  YVSRAYEKLEKAINKWNIDLTNKVCLDIGASTGGFTQCCLE-NNAKLVYAVDVGTDQLHP 118

Query: 107 EPILGVKFF---KFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
             +   K     +++F +    EF+        + +  D++
Sbjct: 119 SLLNNKKVINMSQYNFKNAKKQEFLENI-----NFICCDVS 154


>gi|25010556|ref|NP_734951.1| hypothetical protein gbs0486 [Streptococcus agalactiae NEM316]
 gi|23094909|emb|CAD46130.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 251

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
             ++ R++++       +Q  + I  + A +  + A+D LD + I      K +      
Sbjct: 36  FSADSRVLEVAC-----NQCTSSIDIAKAFSCHITALD-LDSKVIEKA---KENVKKAQL 86

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-- 182
            EFI    G    L   D ++  + +  +  + + S  E A    L +L  GG  L    
Sbjct: 87  EEFIEVIQGNALKLPFPDNSFDIVINEAMLTMLSNSAKEKAIKEYLRVLKPGGCLLTHDV 146

Query: 183 TFQGGTTNDILCLLKK 198
           ++Q   T  ++  L+ 
Sbjct: 147 SYQDEDTAKLIDQLRH 162


>gi|315636413|ref|ZP_07891657.1| hemolysin A [Arcobacter butzleri JV22]
 gi|315479279|gb|EFU69968.1| hemolysin A [Arcobacter butzleri JV22]
          Length = 236

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 47  WRARSAYKLL-QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-IL 104
           + +R+AYKL   + E       ++  +D+GSS G ++Q+             V       
Sbjct: 56  YVSRAAYKLKFFLQELKNFDLKDKNALDIGSSTGGFTQILLENEIKKVTCVDVGTNQLHE 115

Query: 105 DMEPILGVKFF-KFDFLDLDSWEF 127
            ++    + FF   D  + +S E 
Sbjct: 116 RIKYNDKINFFENTDIRNFESDEI 139


>gi|17549665|ref|NP_523005.1| cyclopropane fatty acyl phospholipid synthase [Ralstonia
           solanacearum GMI1000]
 gi|17431919|emb|CAD18597.1| probable cyclopropane-fatty-acyl-phospholipid synthase protein
           [Ralstonia solanacearum GMI1000]
          Length = 388

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 17/133 (12%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
            A+KL  +  K   LQ   R++D+G   GS+ + AA+  G       + A          
Sbjct: 154 QAHKLDLVCRKLG-LQPGMRVLDIGCGWGSFMRFAAKRYGVQCTGVTISAEQ-------A 205

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
           G    +   L +++     + + G  D ++S   +  +G +                   
Sbjct: 206 GFVRAQCAGLPIETRLADYRDLDGRFDRIVSLGMFEHVGRKNHAAY---------MRVTE 256

Query: 171 EMLNIGGDFLVKT 183
             L   G FL+ T
Sbjct: 257 RCLADDGLFLLHT 269


>gi|87161409|ref|YP_494057.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195204|ref|YP_500005.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87127383|gb|ABD21897.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202762|gb|ABD30572.1| menaquinone biosynthesis methyltransferase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 200

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILDM-----EPILGVKFFKFDF 119
           +   + +D+    G W+   ++  G     T +  + ++L++       +  VK    D 
Sbjct: 7   RKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 66

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 67  MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 108

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 109 VCLETSQPTLPVFKQMYALYFKFV 132


>gi|149193898|ref|ZP_01870996.1| Hemolysin A [Caminibacter mediatlanticus TB-2]
 gi|149135851|gb|EDM24329.1| Hemolysin A [Caminibacter mediatlanticus TB-2]
          Length = 238

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD- 105
           + +R+A+KL     K+ I    + ++D+G+S G +S+V+            V +  +   
Sbjct: 55  YVSRAAWKLKNYLNKYNISFKEKSVLDVGASTGGFSEVSLEKGAKKVVCVDVGSNQLHPK 114

Query: 106 -MEPILGVKFFKFDFLD 121
             E +    F   D  D
Sbjct: 115 IKENMKVENFENTDIRD 131


>gi|125623607|ref|YP_001032090.1| ubiquinone/menaquinone biosynthesis methyltransferase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492415|emb|CAL97357.1| Ubiquinone/menaquinone biosynthesis methyltransferase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300070373|gb|ADJ59773.1| ubiquinone/menaquinone biosynthesis methyltransferase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 246

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPIL----------GVKFFK 116
              I+DL    G W+     ++ S   + +V+ +D  + M  I            ++F +
Sbjct: 48  GLSILDLCCGTGDWTF---DLSESVGPSGKVIGLDFSENMLEIAKAKLKEEAKKNIEFLQ 104

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            + + L           G+ D+V                                +L  G
Sbjct: 105 GNAMALP-------FEKGSFDVVTIGYGLRNTPDY-----------LTVLKEIFRVLKPG 146

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKV 203
           G  +       T        + +F+ V
Sbjct: 147 GRVVCIETSHPTLPIYKQAFELYFKNV 173


>gi|258676516|gb|ACV87266.1| polyprotein 1ab [Turkey coronavirus]
          Length = 6605

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6400 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6445

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6446 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6505

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6506 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLIGLNY 6540


>gi|255071427|ref|XP_002499387.1| sterol methytransferase [Micromonas sp. RCC299]
 gi|226514650|gb|ACO60646.1| sterol methytransferase [Micromonas sp. RCC299]
          Length = 346

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 25/120 (20%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI-------LGVKFFKFDF 119
             ++++D+G   G   +  A  TG++       A  I   E +           F K DF
Sbjct: 98  PGKKVLDVGCGVGGPLREIAAFTGASVTGLNNNAFQISRGEELNRRTGRHDHCDFIKADF 157

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +++   +    A+     +  +  A   +G                      +L  GG F
Sbjct: 158 MNIPVPDATYDAV---YQIEATCHAPDAVGCYSEI---------------FRVLKPGGVF 199


>gi|330685487|gb|EGG97140.1| NOL1/NOP2/sun family protein [Staphylococcus epidermidis VCU121]
          Length = 198

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNT---------RVVAIDILDMEPILGVKFF 115
           L  N  ++D  S+PG  +   A I     +           +++  +I  +  +  ++ +
Sbjct: 9   LNRNDSVLDACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDFNIRKLR-LKNIEAY 67

Query: 116 KFDFLDLDSWEFIRQAIGGNPD-LVLSDMAYPTIGHRKIDHLRTM-SLCEAATFFALEML 173
           + D  +    ++ +  +        +          +  + ++++  L           +
Sbjct: 68  QHDATEPYVTQYDKILVDAPCSGFGVLRHKPEIKYTQSKNSIQSLVELQLQILENVKHNV 127

Query: 174 NIGGDFL---VKTFQGGTTNDILCLLKKH 199
             GG  +       Q    N +   LK++
Sbjct: 128 KPGGSIIYSTCTIEQMENENVVYTFLKQN 156


>gi|310696834|gb|ADP06460.1| polyprotein 1ab [Infectious bronchitis virus]
          Length = 6620

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6391 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6436

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F  + L +GG F VK  +   
Sbjct: 6437 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSNFLRKNLALGGSFAVKVTETSW 6496

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6497 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6531


>gi|52550460|gb|AAU84309.1| conserved hypothetical protein [uncultured archaeon GZfos9D1]
          Length = 164

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++    ++D G  PGS+    + + G +    R+ A+DI  +  I  V+          +
Sbjct: 23  IKLGDHVLDYGCGPGSYITPISELVGKDG---RIYALDIHPLA-IQRVQRI------AST 72

Query: 125 WEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
            +    + I  +    L D +   +    + H  +    +A       +L   G
Sbjct: 73  KQLTNVETICSDCKTGLPDNSLDAVLLYDVFHKLSEP--DAVLEKLHRVLKPNG 124


>gi|261198371|ref|XP_002625587.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239594739|gb|EEQ77320.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239610139|gb|EEQ87126.1| TAM domain methyltransferase [Ajellomyces dermatitidis ER-3]
 gi|327357226|gb|EGE86083.1| TAM domain methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 340

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 23/121 (19%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  I    +R++D G++ G+W    A       +   V+  D+  ++P       KF+  
Sbjct: 96  RAPITAKPKRVLDFGTATGAW----AIDFADEFHTATVIGNDLSPIQPSWVPPNCKFYVD 151

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D                   +  SD A+  I  R +           +   AL+ L  GG
Sbjct: 152 DVESE--------------WVYTSDEAFDFIHARGMGGSIKDWNTLYS--RALQHLKPGG 195

Query: 178 D 178
            
Sbjct: 196 W 196


>gi|257058243|ref|YP_003136131.1| methyltransferase type 11 [Cyanothece sp. PCC 8802]
 gi|256588409|gb|ACU99295.1| Methyltransferase type 11 [Cyanothece sp. PCC 8802]
          Length = 283

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 33/186 (17%)

Query: 24  GSSRDWLN---RHINDPYVQRAQLEGWRARS-AYKL----LQINEKHQIL-----QSNRR 70
            SS  W      H++          G+  RS  YK+     QI+   ++L     ++   
Sbjct: 15  ASSELWEKIWGEHMH---------HGYYGRSGNYKINRRQAQIDLIEELLIWAKIKTVEN 65

Query: 71  IVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQ 130
           ++D+G   G  +   A    + A    +  +              +       +      
Sbjct: 66  LIDVGCGIGGSTLYLAEKFNAKATGITLSPVQASRATERAKNANLQETIQFQVADAQNMP 125

Query: 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
               N DLV S  +   +  +                    +L  GG F+  T+   +TN
Sbjct: 126 FPDNNFDLVWSLESGEHMPDK--TQFLQE---------CYRVLKPGGTFIFATWCHRSTN 174

Query: 191 DILCLL 196
            +   L
Sbjct: 175 SLAGEL 180


>gi|147744573|sp|P16379|L_VSNJO RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=mRNA guanylyltransferase
 gi|27447195|gb|AAL73076.1| L protein [Vesicular stomatitis virus]
          Length = 2109

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 13/115 (11%)

Query: 118  DFLDLDSWEFIRQA---IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
            D  D ++W++        G + +L+  DM         +   +  SL      +   +L 
Sbjct: 1735 DLSDENTWKYFLHLKKGCGMSINLITMDME----VQDSVISYKIESLVRQ---YVPVLLE 1787

Query: 175  IGGDFLVKTF---QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
              G  + KT+        ++ L L+   F  V  V+   S + + E++L+ +G +
Sbjct: 1788 SDGCLIYKTYGTYIATQEDNSLTLIGSLFHSVQLVQTDLSSSNTSELYLVCRGLK 1842


>gi|85374245|ref|YP_458307.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
 gi|84787328|gb|ABC63510.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
          Length = 393

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 22/140 (15%)

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDMEP 108
           Q+  +    +    ++DL +  G  +   A    S     R++A D        +L    
Sbjct: 191 QLACRAADARPGETVLDLCAGAGGKTLALA---ASMELRGRLIASDTDLRRGRQLLPRAE 247

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK---------IDHLRT- 158
             G    +   LD      +   + G  D VL D      G  +           H    
Sbjct: 248 RAGAAGIETRLLDPGRELEVLGDLTGQVDCVLVDAPCSGTGTWRRKPEAKWRLTPHALQR 307

Query: 159 -MSLCEAATFFALEMLNIGG 177
              L +     A  ++  GG
Sbjct: 308 YADLQDHLLDVAARLVKPGG 327


>gi|94984158|ref|YP_603522.1| cyclopropane-fatty-acyl-phospholipid synthase [Deinococcus
           geothermalis DSM 11300]
 gi|94554439|gb|ABF44353.1| Cyclopropane-fatty-acyl-phospholipid synthase [Deinococcus
           geothermalis DSM 11300]
          Length = 471

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 17/132 (12%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I  K ++ Q   R++D+G   G  +  AA+  G       V+ + + + +   G  
Sbjct: 220 KLEHICRKLRLTQ-GERLLDIGCGWGGLAIYAAQHYGVE-----VLGVTLSEAQLREGRA 273

Query: 114 FFKFDFLDLDSWEFIRQA--IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
             +   L       +R    + G  D + S      +G R +               A  
Sbjct: 274 RVEAAGLRDRVRLELRDYRDVEGQFDKISSVGMAEHVGRRNMPEY---------FATAYR 324

Query: 172 MLNIGGDFLVKT 183
           +L  GG  +   
Sbjct: 325 VLKPGGLMMNHA 336


>gi|296133277|ref|YP_003640524.1| ubiquinone/menaquinone biosynthesis methyltransferase [Thermincola
           sp. JR]
 gi|296031855|gb|ADG82623.1| ubiquinone/menaquinone biosynthesis methyltransferase [Thermincola
           potens JR]
          Length = 526

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 19/142 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLD 123
           L+   R +D+    G    +   +  +     +VV +D   DM  I G         +  
Sbjct: 319 LKPGGRALDVCCGTG---MLTLELAKAAGPVGKVVGLDFCGDMLQIAGKN-----ITNTP 370

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIG----HRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
             + I    G   DL   D  +         R +  +R       A    + ++  GG  
Sbjct: 371 YIKNIEFIQGNAMDLPFPDNYFDCATIGFGLRNVPDMRQ------AIREMMRVVKPGGRV 424

Query: 180 LVKTFQGGTTNDILCLLKKHFQ 201
           +   F   T      +   +F+
Sbjct: 425 VSLEFAKPTVPGFRQIYNFYFR 446


>gi|223935420|ref|ZP_03627337.1| Methyltransferase type 11 [bacterium Ellin514]
 gi|223895830|gb|EEF62274.1| Methyltransferase type 11 [bacterium Ellin514]
          Length = 271

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 20/145 (13%)

Query: 56  LQINEKHQILQS----NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-ILDMEPIL 110
           LQI   H +LQS     + I+++G   G       R            +   I       
Sbjct: 64  LQIGLYHHLLQSASPHGKSILEVGCGRGGGLSYIHRYHQPAETVGVDFSAKVIQLCRRKY 123

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
             +  +F   D ++  F         ++  S                   L EAA     
Sbjct: 124 TGQKIQFQPGDAEALPFDNNRFDCIINVESSHCYPSMEKF----------LAEAA----- 168

Query: 171 EMLNIGGDFLVKTFQGGTTNDILCL 195
            +L  GG FL   F+  T   +L  
Sbjct: 169 RVLKPGGHFLCADFRDATQLPLLHQ 193


>gi|49483658|ref|YP_040882.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904052|ref|ZP_06311940.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905817|ref|ZP_06313672.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908787|ref|ZP_06316605.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|283958234|ref|ZP_06375685.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295427979|ref|ZP_06820611.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591051|ref|ZP_06949689.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749739|sp|Q6GGU0|UBIE_STAAR RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|49241787|emb|CAG40478.1| putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282327051|gb|EFB57346.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331109|gb|EFB60623.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595670|gb|EFC00634.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790383|gb|EFC29200.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295128337|gb|EFG57971.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297575937|gb|EFH94653.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|315195367|gb|EFU25754.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 241

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++  GS    T +      + +       +  VK    D 
Sbjct: 48  RKGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPVFKQMYALYFKFV 173


>gi|302678103|ref|XP_003028734.1| hypothetical protein SCHCODRAFT_85907 [Schizophyllum commune H4-8]
 gi|300102423|gb|EFI93831.1| hypothetical protein SCHCODRAFT_85907 [Schizophyllum commune H4-8]
          Length = 347

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 44/161 (27%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             A+ E + A       Q+N     L+   R++D+G   G  ++  AR          ++
Sbjct: 78  SLARHEHYLA------AQMN-----LRPKMRVLDIGCGVGGPAREIARFADVE-----II 121

Query: 100 AIDILDMEPILG------------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            ++  D +                VKF K DF+ L + +F   A      +  +  A   
Sbjct: 122 GLNNNDFQVARARQYTKEAGLENQVKFVKGDFMKL-AEQFGENAFDAVYAVEATCHAPSF 180

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            G                      +L  GG F    +    
Sbjct: 181 AGVYGEV---------------FRVLKPGGVFGCYEWVMTD 206


>gi|297207870|ref|ZP_06924303.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296887444|gb|EFH26344.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 241

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   +++ G     T +      + +       +  VK    D 
Sbjct: 48  RKGTKALDVCCGTGDWTIALSKVVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPVFKQMYALYFKFV 173


>gi|330906457|ref|XP_003295481.1| hypothetical protein PTT_01258 [Pyrenophora teres f. teres 0-1]
 gi|311333196|gb|EFQ96418.1| hypothetical protein PTT_01258 [Pyrenophora teres f. teres 0-1]
          Length = 460

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           +  +R++D+G   G W         ++    RV  ID+  ++P      V FF  D    
Sbjct: 202 KRPKRMLDIGCGTGKWCFE----MANDFPKCRVEGIDLSPIQPKISCDNVDFFMDDITRP 257

Query: 123 D 123
           +
Sbjct: 258 E 258


>gi|253575807|ref|ZP_04853142.1| arsenite S-adenosylmethyltransferase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844850|gb|EES72863.1| arsenite S-adenosylmethyltransferase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 264

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+    ++DLGS  G    +A+R  G   +   V+ +D+   M         K  F + D
Sbjct: 77  LKPGEVVLDLGSGGGFDCFLASRQVG---DTGYVIGVDMTPEMVSRARSNAVKGGFTNTD 133

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                   +G    L + D     I    + +L      +     A  +L  GG
Sbjct: 134 ------FRLGEIEHLPVPDQTVDVIISNCVINLSPDK--QQVYDEAFRVLRSGG 179


>gi|70982043|ref|XP_746550.1| sterol 24-c-methyltransferase [Aspergillus fumigatus Af293]
 gi|66844173|gb|EAL84512.1| sterol 24-c-methyltransferase, putative [Aspergillus fumigatus
           Af293]
 gi|159122217|gb|EDP47339.1| sterol 24-c-methyltransferase, putative [Aspergillus fumigatus
           A1163]
          Length = 377

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 23/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   +++D+G   G  ++   + T +N     VV ++  D +            ++  +
Sbjct: 125 IKEGMKVLDVGCGVGGPAREIVKFTDAN-----VVGLNNNDYQ------------IERAT 167

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               R+ +      V  D           D +  +     A            +L  GG 
Sbjct: 168 RYAEREGLSHKLSFVKGDFMQMKFPDNSFDAVYAIEATVHAPDLEGVYKEIFRVLKPGGV 227

Query: 179 F 179
           F
Sbjct: 228 F 228


>gi|297545215|ref|YP_003677517.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842990|gb|ADH61506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 459

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 15/157 (9%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK--FFKFDFLDLD 123
           +   +I+D+ ++PG  +   A   G                  +  V+    +   +  +
Sbjct: 102 KPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRMKALVENVERMGIRNIVITNE 161

Query: 124 SWEFIRQAIGGNPDLVLSDM--------AYPTIGHRKIDHLRTMSLCEAATFFALEM--- 172
           + E +  A  G  D +L D                +       +S           +   
Sbjct: 162 TPEKLTTAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLNNVISCSITQKNILRNVAPL 221

Query: 173 LNIGGDFL--VKTFQGGTTNDILCLLKKHFQKVIHVK 207
           L  GG  +    TF       ++    + + +    K
Sbjct: 222 LKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKVEK 258


>gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1]
 gi|19068511|emb|CAD24979.1| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi
           GB-M1]
          Length = 370

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 20/131 (15%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNA-------NNTRVVA--IDILDMEPILGVKFF 115
           L+    +VDL ++PG  +   A +  +         N  R+     +I  M  +      
Sbjct: 169 LKEGLTVVDLCAAPGGKTTHIAALMENTGVIYANDVNEERIAGLKSNIQRMG-VRNCIVM 227

Query: 116 KFDFLDLDSWEFIRQAIGGNPD---LVLSDMAYPTIGHRKIDH---LRTMSLCEAATFFA 169
             D   ++     R  +        ++  D +  T   R            L        
Sbjct: 228 NMDGRKVNVGRVDRVLLDAPCSGTGVISKDPSVKTSRTRSEIDRMVTLQKELILHGF--- 284

Query: 170 LEMLNIGGDFL 180
             ML  GG  +
Sbjct: 285 -GMLKPGGILM 294


>gi|121714493|ref|XP_001274857.1| sterol 24-c-methyltransferase, putative [Aspergillus clavatus NRRL
           1]
 gi|119403011|gb|EAW13431.1| sterol 24-c-methyltransferase, putative [Aspergillus clavatus NRRL
           1]
          Length = 377

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 23/133 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++S  +++D+G   G  ++   + T +N     V  ++  D +            ++  +
Sbjct: 125 IKSGMKVLDVGCGVGGPAREIVKFTDAN-----VTGLNNNDYQ------------IERAT 167

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               R+ +    + V  D           D +  +     A            +L  GG 
Sbjct: 168 RYAGREGLSHKLNFVKGDFMQMKFPDNSFDAVYAIEATVHAPELEGVYKEIFRVLKPGGV 227

Query: 179 FLVKTFQGGTTND 191
           F V  +      D
Sbjct: 228 FGVYEWLMTDEYD 240


>gi|302678101|ref|XP_003028733.1| hypothetical protein SCHCODRAFT_258271 [Schizophyllum commune H4-8]
 gi|300102422|gb|EFI93830.1| hypothetical protein SCHCODRAFT_258271 [Schizophyllum commune H4-8]
          Length = 325

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 44/161 (27%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             A+ E + A       Q+N     L+   R++D+G   G  ++  AR          ++
Sbjct: 56  SLARHEHYLA------AQMN-----LRPKMRVLDIGCGVGGPAREIARFADVE-----II 99

Query: 100 AIDILDMEPILG------------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            ++  D +                VKF K DF+ L + +F   A      +  +  A   
Sbjct: 100 GLNNNDFQVARARQYTKEAGLENQVKFVKGDFMKL-AEQFGENAFDAVYAVEATCHAPSF 158

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            G                     ++L  GG F    +    
Sbjct: 159 AGVYGEV---------------FKVLKPGGVFGCYEWVMTD 184


>gi|302672336|ref|XP_003025861.1| hypothetical protein SCHCODRAFT_259040 [Schizophyllum commune H4-8]
 gi|300099530|gb|EFI90958.1| hypothetical protein SCHCODRAFT_259040 [Schizophyllum commune H4-8]
          Length = 291

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 44/161 (27%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             A+ E + A       Q+N     L+   R++D+G   G  ++  AR          ++
Sbjct: 55  SLARHEHYLA------AQMN-----LRPKMRVLDIGCGVGGPAREIARFADVE-----II 98

Query: 100 AIDILDMEPILG------------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            ++  D +                VKF K DF+ L + +F   A      +  +  A   
Sbjct: 99  GLNNNDFQVARARQYTKEAGLENQVKFVKGDFMKL-AEQFGENAFDAVYAVEATCHAPSF 157

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            G                     ++L  GG F    +    
Sbjct: 158 AGVYGEV---------------FKVLKPGGVFGCYEWVMTD 183


>gi|220933251|ref|YP_002512150.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994561|gb|ACL71163.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 249

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           +  +R++DL    G    +A+R          VV  DI      +G         D    
Sbjct: 60  RPGQRVLDLAGGTG---DLASRFARLTGPTGEVVLCDINASMLNVGRDRL----TDEGLV 112

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           E +R   G    L   D  +  I         T    + A      +L  GG  LV  F 
Sbjct: 113 ENLRFVQGNAECLPFPDEHFDLITIAFGLRNVTDK--DKALASMRRVLKPGGKLLVLEFS 170

Query: 186 GGTTNDIL 193
              T  + 
Sbjct: 171 HPVTPGLK 178


>gi|326407135|gb|ADZ64206.1| ubiquinone/menaquinone biosynthesis methyltransferase [Lactococcus
           lactis subsp. lactis CV56]
          Length = 252

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 32/147 (21%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPIL----------GVKFFK 116
              I+DL    G W+     ++ S   + +V+ +D  + M  I            ++F +
Sbjct: 54  GLSILDLCCGTGDWTF---DLSESVGPSGKVIGLDFSENMLEIAKAKLKEEAKKNIEFLQ 110

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            + + L            N D+V                                +L  G
Sbjct: 111 GNAMALP-------FENENFDVVTIGYGLRNTPDY-----------LTVLKEIFRVLKPG 152

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKV 203
           G  +       T        + +F+ V
Sbjct: 153 GRVVCIETSHPTLPIYKQAFELYFKNV 179


>gi|293365714|ref|ZP_06612423.1| tRNA/rRNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307703658|ref|ZP_07640600.1| NOL1/NOP2/sun family protein [Streptococcus oralis ATCC 35037]
 gi|291316082|gb|EFE56526.1| tRNA/rRNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307623065|gb|EFO02060.1| NOL1/NOP2/sun family protein [Streptococcus oralis ATCC 35037]
          Length = 434

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 19/130 (14%)

Query: 67  SNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDILDM----EPILGVKFFKFDFLD 121
              +++DL ++PG  S Q+AA +       +  ++     +        G        + 
Sbjct: 91  PGMKVLDLAAAPGGKSTQLAAYLANQGVLVSNEISSKRAKILVENMERFGATNV---VVT 147

Query: 122 LDSWEFIRQAIGGNPDLVLSDM----------AYPTIGHRKIDHLRT-MSLCEAATFFAL 170
            +S + + +   G  D+++ D               + +  ID+     SL       A+
Sbjct: 148 NESADRLAKVFKGYFDVIVLDAPCSGEGMFRKQPDAMDYWNIDYPNQCASLQRKILEDAV 207

Query: 171 EMLNIGGDFL 180
            ML  GG  +
Sbjct: 208 TMLAEGGRLV 217


>gi|258512029|ref|YP_003185463.1| Fmu (Sun) domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478755|gb|ACV59074.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 479

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-----LDMEPILGVKFFKFDFL 120
           Q   RI+DL ++PG  +  AA +  +     ++VA DI     L +              
Sbjct: 105 QPGERILDLCAAPGGKTTHAA-LLAARRGGAQIVANDIHRDRVLALAENAERVGAPCAIT 163

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAY--------PTIGHRKIDHL--RTMSLCEAATFFAL 170
           +                +V+             P +          R  +L +     AL
Sbjct: 164 NESPAALAEAWPQAFDAMVVDAPCSGEGMFRKDPAVRAEWRPDAPERFQALQKDILHHAL 223

Query: 171 EMLNIGGDFL 180
            ML  GG  +
Sbjct: 224 TMLRPGGRLV 233


>gi|119487178|ref|XP_001262444.1| sterol 24-c-methyltransferase, putative [Neosartorya fischeri NRRL
           181]
 gi|119410601|gb|EAW20547.1| sterol 24-c-methyltransferase, putative [Neosartorya fischeri NRRL
           181]
          Length = 377

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 23/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++   +++D+G   G  ++   + T +N     VV ++  D +            ++  +
Sbjct: 125 IKEGMKVLDVGCGVGGPAREIVKFTDAN-----VVGLNNNDYQ------------IERAT 167

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               R+ +      V  D           D +  +     A            +L  GG 
Sbjct: 168 RYAEREGLSHKLSFVKGDFMQMKFPDNSFDAVYAIEATVHAPDLEGVYKEIFRVLKPGGV 227

Query: 179 F 179
           F
Sbjct: 228 F 228


>gi|163847401|ref|YP_001635445.1| ribosomal protein L11 methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525250|ref|YP_002569721.1| ribosomal protein L11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|259534492|sp|A9WD89|PRMA_CHLAA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|259534495|sp|B9LFP4|PRMA_CHLSY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|163668690|gb|ABY35056.1| ribosomal protein L11 methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449129|gb|ACM53395.1| ribosomal protein L11 methyltransferase [Chloroflexus sp. Y-400-fl]
          Length = 328

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 25/140 (17%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME---PILG 111
           LL+     +++Q  ++++DLG+  G  +  AA++        +V+A+D   +        
Sbjct: 159 LLE-----RLVQPGQQVLDLGTGSGILAIAAAKL-----GAGQVLALDNDPIAVRVAHEN 208

Query: 112 VKFFK-FDFLDLD-----SWEFIRQAIGGN-----PDLVLSDMAYPTIGHRKIDHLRTMS 160
           V+  +  D + +      + + +   + G+     PD  L D            +L    
Sbjct: 209 VERNQVQDLVTVAEGSLGAGQAMGHWLSGDFGPETPDPTLHDNTPQATFDLIAANLIAKV 268

Query: 161 LCEAATFFALEMLNIGGDFL 180
           L   A   A   L  GG  +
Sbjct: 269 LVLLAPDLATA-LKPGGLLI 287


>gi|285019908|ref|YP_003377619.1| hypothetical protein XALc_3146 [Xanthomonas albilineans GPE PC73]
 gi|283475126|emb|CBA17625.1| hypothetical protein XALc_3146 [Xanthomonas albilineans]
          Length = 393

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 13/138 (9%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP------ILGVKFFKFDFLD 121
            +R++DL  + G ++  A ++ G+       +  D++++         +  KF + D   
Sbjct: 220 GKRVLDLCCNTGGFAVYA-QVRGAAEVVGVDIDQDVIEIAKGNARLNEVRPKFVQADIF- 277

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
              +     A G   D+V+ D A  T    ++       L       AL ++  GG F  
Sbjct: 278 --PYLRDAAARGDQYDVVILDPAKMTRDRDQVIPALKKYLDMN--KLALGVVAPGGLFAT 333

Query: 182 KTFQG-GTTNDILCLLKK 198
            +  G    ++ L +L++
Sbjct: 334 FSCTGLVAEHEFLDMLRR 351


>gi|224080275|ref|XP_002306079.1| predicted protein [Populus trichocarpa]
 gi|222849043|gb|EEE86590.1| predicted protein [Populus trichocarpa]
          Length = 252

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 60/215 (27%), Gaps = 47/215 (21%)

Query: 34  INDPYV---QRAQLEGWRARSAYK-------LLQINEKHQILQSNRRIVDLGSSPGSWSQ 83
             DP+    + ++ E +     +K       L+Q +     +     +++LG       +
Sbjct: 18  YQDPHYWNERFSKEEHY---EWFKDYSHFRHLIQAH-----IPPTSSVLELGCGNSQLCE 69

Query: 84  VAARITGSNANNTRVVAIDILDMEP------ILGVKFFKFDFLDLDSWEFIRQAIGGNPD 137
              R   +      + A+ +  M+          +K  + D LDL   +     +     
Sbjct: 70  EMYRDGITEVTCIDLSAVAVEKMQKRLEAKGYKEIKVLEADMLDLPFNDECFDVVIEKGT 129

Query: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG----------DFLVKTFQGG 187
           +   D+ +   G        T++  +A       +L   G           F    F   
Sbjct: 130 M---DVLFVNSGDPWNPRPETVAQVKAMLEGVHRVLKPDGIFISISFGQPHFRRPLFDAP 186

Query: 188 TT------NDILCLLKKHFQKVIHVKPVASRAESV 216
                   +         F  +      ASR  S 
Sbjct: 187 DFTWSVEWSTFGDGFHYFFNVLR----KASRRSSS 217


>gi|17887465|gb|AAL40895.1| phosphoethanolamine methyltransferase [Triticum aestivum]
          Length = 498

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSW 81
           + +   H  D  V+        +R+  K L   E+ ++L      + + +++LG+  G +
Sbjct: 20  KSYWEEHSKDLTVES---MMLDSRA--KDLDKEERPEVLAILPSYAGKTVLELGAGIGRF 74

Query: 82  SQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
           +   A+  G       V+A+D +D   I   +    D     ++     A   +P+L + 
Sbjct: 75  TGELAKEAGH------VIALDFID-SVIKKNEEINGDIYKNITFMC---ADVTSPELKIE 124

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           D +   +    +         E      ++ L  GG   +
Sbjct: 125 DNSVDIVFSNWLLMYLNDEEVEKLIGRIVKWLKPGGHIFI 164


>gi|1346175|sp|P49016|UBIE_LACLA RecName: Full=Menaquinone biosynthesis methyltransferase ubiE;
           AltName: Full=gerC2 protein homolog
 gi|410740|gb|AAA03166.1| putative [Lactococcus lactis]
          Length = 252

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPIL----------GVKFFK 116
              I+DL    G W+     ++ S   + +V+ +D  + M  I            ++F +
Sbjct: 54  GLSILDLCCGTGDWTF---DLSESVGPSGKVIGLDFSENMLEIAKAKLKEEAKKNIEFLQ 110

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            + + L           G+ D+V                                +L  G
Sbjct: 111 GNAMALP-------FEKGSFDVVTIGYGLRNTPDY-----------LTVLKEIFRVLKPG 152

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKV 203
           G  +       T        + +F+ V
Sbjct: 153 GRVVCIETSHPTLPIYKQAFELYFKNV 179


>gi|46114284|ref|XP_383160.1| hypothetical protein FG02984.1 [Gibberella zeae PH-1]
          Length = 390

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 52  AYKLL---QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            YK++   +++E   I ++ +R++DLG   G W   A     +N +   V+ +D+  ++P
Sbjct: 137 VYKIILDGELHE-APINENPQRVLDLGCGTGIW---AIEFADANPSAD-VIGVDLSPIQP 191

Query: 109 ---ILGVKFFKFDFLDL 122
                  +F   D    
Sbjct: 192 KFVPPNCRFEVDDITQE 208


>gi|297181969|gb|ADI18145.1| predicted rRNA methylase [uncultured Verrucomicrobiales bacterium
           HF0200_39L05]
          Length = 301

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 39  VQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV 98
           V  A  + + +R  YKL    E   +  +  R +DLG+S G ++    +   +      V
Sbjct: 105 VTLAATDKFVSRGGYKLEHALETFGVEAAGLRAIDLGASTGGFTDCLLQHGAAMVAAVDV 164


>gi|303271891|ref|XP_003055307.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463281|gb|EEH60559.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 184

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 18/127 (14%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           L+   EK+ +   +  IVD+G S G    ++ R         R++ +D+           
Sbjct: 9   LINTAEKNGVAWRDIAIVDVGCSVG----ISTRYISDAFPTARMIGMDLSPYM------- 57

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
                  L   +   +   G  D  + D +   +    + H        A    A  +L 
Sbjct: 58  -------LAVAKRADEGKPGGEDTKMEDGSVDVVSLAFVIHECPEYATRALLTEAARILK 110

Query: 175 IGGDFLV 181
            GG F++
Sbjct: 111 PGGTFVM 117


>gi|331003128|ref|ZP_08326638.1| hypothetical protein HMPREF0491_01500 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412959|gb|EGG92336.1| hypothetical protein HMPREF0491_01500 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 248

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 15/157 (9%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           ++   I+DL +  G    + +  T +       +  DI DM     +      K D ++ 
Sbjct: 47  KNGGHIIDLCTGSGIVPVLLSAKTSAKRITGIEIQKDIADMANRSVLYNSLEEKIDIIND 106

Query: 123 DSWEFIRQAIGGNPDLVLSDMAY---------PTIGHRKIDHLRTMSLCEAATFFALEML 173
           D    ++     + D +  +  Y         P +      H     L E     + ++L
Sbjct: 107 DIANALKYIKPCSVDTISVNPPYMKDTTAIKNPDLPLAIARHELLTDL-ETVVGISGKLL 165

Query: 174 NIGGDFLV--KTFQGGTTNDILCLLKKHFQKVIHVKP 208
              G F +  K  +      +L   +   +++  V P
Sbjct: 166 KENGKFFMIHKPSRLSEIFAVLKKNRIEPKRIRFVHP 202


>gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038286|gb|EEG48532.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
           10507]
          Length = 446

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 21/132 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +   +I+DL ++PG  S   A                    ++  +I+    I  V+   
Sbjct: 251 KKGDQILDLCAAPGGKSLHVADKMAGFGMVEARDLTEYKVGLIQENIVRAGTI-NVQTRC 309

Query: 117 FD--FLDLDSWEFIRQAIGGNPDLV------LSDMAYPTIGHRKIDHLRTMSLCEAATFF 168
            D   LD+DS +     +   P           D+ Y     +       + L       
Sbjct: 310 MDATVLDIDSEDSADIVLADVPCSGYGVIGKKPDIKYKVTPSK---QEEIVILQRKILDR 366

Query: 169 ALEMLNIGGDFL 180
           A   +  GG  +
Sbjct: 367 AARYVKRGGTLV 378


>gi|85375086|ref|YP_459148.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
 gi|84788169|gb|ABC64351.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
           HTCC2594]
          Length = 415

 Score = 36.4 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 19/143 (13%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-----MEPILGVKFFKFDFLDL 122
            R ++DL ++PG  +   A      A   +V A+DI       ++  L     K   +  
Sbjct: 226 GRHVLDLCAAPGGKTLQLA------AAGWKVTALDISKRRLGLLKDNLTRTNLKASTVRA 279

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHR-KIDH---LRTM----SLCEAATFFALEMLN 174
           D+  +  +       L     A  T      + H    R +     L  A    A   L 
Sbjct: 280 DALAWEPKHHFDAILLDAPCTATGTCRRHPDVLHRIGPRQIGEMSELQAALLGRAQGWLK 339

Query: 175 IGGDFLVKTFQGGTTNDILCLLK 197
            GG  +            +   K
Sbjct: 340 PGGTLVYAVCSLEEEEGKVQAAK 362


>gi|310696870|gb|ADP06493.1| polyprotein 1ab [Infectious bronchitis virus]
          Length = 6631

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6402 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6447

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6448 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6507

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6508 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6542


>gi|310696858|gb|ADP06482.1| polyprotein 1ab [Infectious bronchitis virus]
          Length = 6620

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6391 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6436

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6437 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6496

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6497 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6531


>gi|284029155|ref|YP_003379086.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283808448|gb|ADB30287.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 245

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           LL+   +   L+   R++DLGS  G  S   A+  G+     +V A D+  ++P      
Sbjct: 32  LLEDLARDLDLRPGMRVLDLGSGKGVTSVFLAKEYGA-----QVWAADLW-IDPTDAAAN 85

Query: 115 FKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           F   D   L +            D ++   AY   G                  +    L
Sbjct: 86  FTGLDITALKAEAHALPFAREFFDAIVCIDAYEYFGTADNY-----------LAYLTSFL 134

Query: 174 NIGG 177
             GG
Sbjct: 135 RPGG 138


>gi|171988308|gb|ACB59371.1| 1ab polyprotein [Infectious bronchitis virus]
          Length = 6610

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6381 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6426

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6427 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6486

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6487 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6521


>gi|171988297|gb|ACB59361.1| 1ab polyprotein [Infectious bronchitis virus]
          Length = 6610

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6381 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6426

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6427 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6486

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6487 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6521


>gi|255933818|ref|XP_002558288.1| Pc12g14840 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582907|emb|CAP81111.1| Pc12g14840 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 377

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 23/131 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++ + +++D+G   G  ++   + TG++     V  ++  D +            +D  +
Sbjct: 125 IKEDMKVLDVGCGVGGPAREMVKFTGAH-----VTGLNNNDYQ------------IDRAT 167

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               +Q +      V  D    +      D +  +     A            +L  GG 
Sbjct: 168 HYAHKQGLSDKMAFVKGDFMQMSFPDNSFDVVYAIEATVHAPELVGVYSEIFRVLKPGGT 227

Query: 179 FLVKTFQGGTT 189
           F V  +     
Sbjct: 228 FAVYEWLMTDD 238


>gi|83815482|ref|YP_446560.1| arsenite S-adenosylmethyltransferase [Salinibacter ruber DSM 13855]
 gi|83756876|gb|ABC44989.1| cyclopropane-fatty-acyl-phospholipid synthase [Salinibacter ruber
           DSM 13855]
          Length = 270

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 40/123 (32%), Gaps = 26/123 (21%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV--------AIDILDMEPILGVKFFK 116
           LQ   R++DLGS  G  + VA R  G + +   V         A    D      V F  
Sbjct: 71  LQPGERVLDLGSGAGMDAFVARRTVGPDGHVHGVDFAEEMVAKARANADTLDYDNVTFEV 130

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D   L           G  D++LS+     +  +           EAA       L  G
Sbjct: 131 GDIEALPV-------ESGAFDVILSNCVLNLVPDK-----------EAAFAQMHRALRPG 172

Query: 177 GDF 179
           G F
Sbjct: 173 GRF 175


>gi|282598517|gb|ADA83496.1| replicase polyprotein 1ab [Infectious bronchitis virus]
          Length = 6619

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6390 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6435

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6436 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSNFLRNNLALGGSFAVKVTETSW 6495

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
              ++  + +   +  +      A  A S E FL+   +
Sbjct: 6496 HENLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6530


>gi|327349225|gb|EGE78082.1| hypothetical protein BDDG_01019 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 327

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 28/130 (21%)

Query: 59  NEKHQILQ---SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGV 112
           +E+  +       +RI+D+G+  G W        G    +  +  +D+  ++P      V
Sbjct: 82  DERFFLAPINPDGKRILDIGTGTGKWPIE----MGDLYPSAELTGVDLSPIQPRWAPPNV 137

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           KF   D         +   I     +         +                      E 
Sbjct: 138 KFIVEDLEQDWVETELYDFIHCRYMMGSIKDWPRLVKKFY------------------EH 179

Query: 173 LNIGGDFLVK 182
           L  GG    K
Sbjct: 180 LKPGGWVEFK 189


>gi|239610350|gb|EEQ87337.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
          Length = 327

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 28/130 (21%)

Query: 59  NEKHQILQ---SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGV 112
           +E+  +       +RI+D+G+  G W        G    +  +  +D+  ++P      V
Sbjct: 82  DERFFLAPINPDGKRILDIGTGTGKWPIE----MGDLYPSAELTGVDLSPIQPRWAPPNV 137

Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
           KF   D         +   I     +         +                      E 
Sbjct: 138 KFIVEDLEQDWVETELYDFIHCRYMMGSIKDWPRLVKKFY------------------EH 179

Query: 173 LNIGGDFLVK 182
           L  GG    K
Sbjct: 180 LKPGGWVEFK 189


>gi|146309213|ref|YP_001189678.1| SAM-dependent methyltransferase [Pseudomonas mendocina ymp]
 gi|145577414|gb|ABP86946.1| SAM-dependent methyltransferase [Pseudomonas mendocina ymp]
          Length = 399

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 3/133 (2%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFL--DLDS 124
             +R++DL S  G W   AA    S           +  +E    +  F       + D 
Sbjct: 221 KGKRVLDLFSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNATLNGFAEKITCVEGDV 280

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           +  +R+         +     P    RK D     +        A+ +LN  G  +  + 
Sbjct: 281 FAALRELKSAEERFDVVIADPPAFIKRKKDIKNGEAAYRRLNEIAMRLLNKDGILVSASC 340

Query: 185 QGG-TTNDILCLL 196
                 +++  +L
Sbjct: 341 SMHLEEDNLQNIL 353


>gi|299069817|emb|CBJ41097.1| Cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty
           acid synthase) (CFA synthase) [Ralstonia solanacearum
           CMR15]
          Length = 402

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           LQ   R++D+G   GS+ + AA+  G       + A          G    +   L +++
Sbjct: 181 LQPGMRVLDIGCGWGSFMRFAAQRYGVQCTGVTISAEQ-------AGFVRAQCAGLPIET 233

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
                + + G  D ++S   +  +G +                 A   L   G FL+ T
Sbjct: 234 RLADYRDLDGRFDRIVSLGMFEHVGRKNHAAY---------MRVAERCLADDGLFLLHT 283


>gi|119717022|ref|YP_923987.1| methyltransferase type 11 [Nocardioides sp. JS614]
 gi|119537683|gb|ABL82300.1| Methyltransferase type 11 [Nocardioides sp. JS614]
          Length = 249

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL-D 123
           L+   R++D+G+  G     A  +    A+   VVA D+ D + + GV        +  +
Sbjct: 11  LRPGERVLDMGAGGGR---HAFEMYRRGAD---VVAFDM-DADELAGVLEIFGAMKENGE 63

Query: 124 SWEFIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
             E     I  G    L   D  +  I   ++       +  AA    + +L  GG   V
Sbjct: 64  VPEGANADIKQGDALQLPFPDGEFDRIVAAEVLEHIHDDV--AAIKELVRVLRPGGTLAV 121


>gi|294827622|ref|NP_710508.2| hemolysin A [Leptospira interrogans serovar Lai str. 56601]
 gi|293385466|gb|AAN47526.2| hemolysin A [Leptospira interrogans serovar Lai str. 56601]
          Length = 259

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R  YKLL+  E   +    +  +DLG+S G ++QV            +V A D+
Sbjct: 62  YVSRGVYKLLKAFEVFPLQVDGKLCIDLGASTGGFTQVLLE-----KGAWKVFACDV 113


>gi|120401137|ref|YP_950966.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119953955|gb|ABM10960.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 25/135 (18%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
               +D+GS PG+ +    R  G       V                   D  +      
Sbjct: 80  GGTALDVGSGPGNVTGALGRAVGPGGLALGV-------------------DISEPMLARA 120

Query: 128 IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA------ATFFALEMLNIGGDFLV 181
           +R   G N   + +D  +        D + ++++ +       A    + +L  G    V
Sbjct: 121 VRAEAGPNVGFIRADAQHLPFRDESFDAVVSIAMLQLIPDPAVALAEMVRVLRPGRRMAV 180

Query: 182 KTFQGGTTNDILCLL 196
                G    +L  L
Sbjct: 181 MVPTAGPAAGLLRYL 195


>gi|85118140|ref|XP_965392.1| sterol 24-C-methyltransferase [Neurospora crassa OR74A]
 gi|62900336|sp|Q9P3R1|ERG6_NEUCR RecName: Full=Sterol 24-C-methyltransferase; AltName:
           Full=Delta(24)-sterol C-methyltransferase
 gi|9367272|emb|CAB97289.1| probable DELTA(24)-STEROL C-METHYLTRANSFERASE (ERG6) [Neurospora
           crassa]
 gi|28927200|gb|EAA36156.1| sterol 24-C-methyltransferase [Neurospora crassa OR74A]
          Length = 379

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 23/121 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++ + +++D+G   G  ++  A+ T ++     +  ++  D +            +D  +
Sbjct: 126 IKKDMKVLDVGCGVGGPAREIAKFTDAH-----ITGLNNNDYQ------------IDRAT 168

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
              +R  + G    V  D    +      D +  +     A            +L  GG 
Sbjct: 169 HYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYRVLKPGGT 228

Query: 179 F 179
           F
Sbjct: 229 F 229


>gi|289579009|ref|YP_003477636.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus
           Ab9]
 gi|289528722|gb|ADD03074.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus
           Ab9]
          Length = 459

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 15/157 (9%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK--FFKFDFLDLD 123
           +   +I+D+ ++PG  +   A   G                  +  V+    +   +  +
Sbjct: 102 KPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRIKALVENVERLGIRNIVITNE 161

Query: 124 SWEFIRQAIGGNPDLVLSDM--------AYPTIGHRKIDHLRTMSLCEAATFFALEM--- 172
           + E +  A  G  D +L D                +       +S           +   
Sbjct: 162 TPEKLTTAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLNNVISCSITQKNILRNVAPL 221

Query: 173 LNIGGDFL--VKTFQGGTTNDILCLLKKHFQKVIHVK 207
           L  GG  +    TF       ++    + + +    K
Sbjct: 222 LKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKVEK 258


>gi|326801075|ref|YP_004318894.1| Cyclopropane-fatty-acyl-phospholipid synthase [Sphingobacterium sp.
           21]
 gi|326551839|gb|ADZ80224.1| Cyclopropane-fatty-acyl-phospholipid synthase [Sphingobacterium sp.
           21]
          Length = 369

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 23/138 (16%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME---PIL 110
           KL  I +K   L + + ++D+G   G +++ A+   G       + A  I   +     L
Sbjct: 141 KLDLICKKLD-LSAGQTVLDIGCGWGGFAKFASENYGVTVTGISIAAEQIEFAKTWCHKL 199

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            V+F   D+ DLD              +V   M            ++T+  C        
Sbjct: 200 PVEFRLQDYRDLD---------EKFDRIVSIGMFEHVGYKNYRIFMQTVHSC-------- 242

Query: 171 EMLNIGGDFLVKTFQGGT 188
             L   G FL+    G  
Sbjct: 243 --LKSNGLFLLHCIGGNE 258


>gi|303248941|ref|ZP_07335188.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302489664|gb|EFL49600.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 255

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLDS 124
           +  +R++D+G  PG+ S+V AR         RV  ID    M         + DF   D+
Sbjct: 29  EDVKRVLDVGCGPGNSSEVLARRFP----RARVRGIDSSPEMIGSARQAHSEIDFELCDA 84

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            + +    GG  D+V S+     +   K      M L           L  GG   V+  
Sbjct: 85  GKELESLEGG-YDVVFSNACIQWVPDHKALLKNMMGL-----------LAPGGVLAVQIP 132

Query: 185 QGGTT 189
                
Sbjct: 133 MNQHE 137


>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
           multacida DSM 20544]
 gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
           multacida DSM 20544]
          Length = 452

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 23/133 (17%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-----LDMEPILGVKFFKFDFL 120
           Q    I+D  ++PG        +     +  R++A DI       +E        +    
Sbjct: 252 QPGEFIIDCCAAPGG---KTTHMAALMHDEGRILAGDIYSHKLQRIEENAARLGIQSIET 308

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIG----------HRKIDHLRTM---SLCEAATF 167
           +      I +      D VL D   P  G            +           L  A   
Sbjct: 309 EEIDAREIGEQYEAMADRVLVD--APCSGLGVLRRKPDARWRKTQQEIAALPDLQLAILE 366

Query: 168 FALEMLNIGGDFL 180
            A   +  GG  +
Sbjct: 367 SAARAVKPGGVLV 379


>gi|296273828|ref|YP_003656459.1| hemolysin A [Arcobacter nitrofigilis DSM 7299]
 gi|296098002|gb|ADG93952.1| hemolysin A [Arcobacter nitrofigilis DSM 7299]
          Length = 240

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-ILD 105
           + +R+AYKL    ++  +  ++   +D+GSS G ++Q+       +     V +      
Sbjct: 56  YVSRAAYKLKYFLDEIDLDLNDLTALDIGSSTGGFTQILLENGVKSVTCVDVGSNQLHEK 115

Query: 106 MEPILGVKFF-KFDFLDLDSWEF 127
           ++    ++F+   D  D  S + 
Sbjct: 116 IKHNKKIEFYENCDIRDFKSDKA 138


>gi|45656188|ref|YP_000274.1| hemolysin A [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599422|gb|AAS68911.1| hemolysin A [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 259

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
           + +R  YKLL+  E   +    +  +DLG+S G ++QV            +V A D+
Sbjct: 62  YVSRGVYKLLKAFEVFPLQVDGKLCIDLGASTGGFTQVLLE-----KGAWKVFACDV 113


>gi|150019695|ref|YP_001311949.1| methyltransferase small [Clostridium beijerinckii NCIMB 8052]
 gi|149906160|gb|ABR36993.1| methyltransferase small [Clostridium beijerinckii NCIMB 8052]
          Length = 249

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 62  HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-------EPILG-VK 113
              +++  +++DL +  G    +              +  D++DM         + G V 
Sbjct: 43  FAYIKNKHKVMDLCTGTGIIPFLIYGKYKPERVYGLEIQEDMVDMAKRSVKLNELEGNVC 102

Query: 114 FFKFDFLDLDSWEFIRQA----IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
           F   D  ++D  + + +     +     L  S +  P        H    +L E     A
Sbjct: 103 FINEDLKNIDYLKTLDKFDAVTVNPPYKLNNSGIINPNDKLAIARHEILCNL-EDVISAA 161

Query: 170 LEMLNIGGDFLVKTFQGGTTNDILCLLKKH---FQKVIHVKPV 209
             +L   G       +     DI  L++K+    ++V  + P 
Sbjct: 162 RILLKDNGRLF-MIHRPERLADIFVLMRKYKIEPKRVKMIHPK 203


>gi|116512532|ref|YP_811439.1| demethylmenaquinone methyltransferase /
           2-octaprenyl-6-methoxy-1,4-benzoquinone methylase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116108186|gb|ABJ73326.1| 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 246

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPIL----------GVKFFK 116
              I+DL    G W+     ++ S   + +V+ +D  + M  I            ++F +
Sbjct: 48  GLSILDLCCGTGDWTF---DLSESVGPSGKVIGLDFSENMLEIAKAKLKEEAKKNIEFLQ 104

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            + + L           G+ D+V                                +L  G
Sbjct: 105 GNAMALP-------FEKGSFDVVTIGYGLRNTPDY-----------LTVLKEIFRVLKPG 146

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKV 203
           G  +       T        + +F+ V
Sbjct: 147 GRVVCIETSHPTLPIYKQAFELYFKNV 173


>gi|21311777|gb|AAM46848.1|AF498259_1 surface antigen LsaA [Lawsonia intracellularis]
          Length = 233

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           Q + + +R AYKLL   E  ++   N+ I+D+G+S G +SQ  +   G+       V  +
Sbjct: 50  QKKEFVSRGAYKLLAAIEAFKLDFENKVILDIGASTGGFSQ-VSLNYGAKLVYALDVGNN 108

Query: 103 ILDME 107
            LD +
Sbjct: 109 QLDYK 113


>gi|297582605|ref|YP_003698385.1| methyltransferase type 11 protein [Bacillus selenitireducens MLS10]
 gi|297141062|gb|ADH97819.1| Methyltransferase type 11 [Bacillus selenitireducens MLS10]
          Length = 354

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 26/138 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITG-------SNANNTRVVAIDILDMEPILGVKFFKF 117
           L++ + I++LG   GS S   AR          SN+ + +      +  E +  +     
Sbjct: 119 LRNGQAILELGCGWGSLSLFMARRYPGSIITVLSNSASQKAYIDHQIAKEKLSNLTVITA 178

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           D  D  + +   + +                    ++    M   +         L  GG
Sbjct: 179 DINDFSTDDRFDRVV-------------------SVEMFEHMQNQKRLMNKIKGFLVPGG 219

Query: 178 DFLVKTFQGGTTNDILCL 195
              +  F    T  +  +
Sbjct: 220 KLFIHIFSHKDTPYLFEV 237


>gi|156037770|ref|XP_001586612.1| hypothetical protein SS1G_12599 [Sclerotinia sclerotiorum 1980]
 gi|154698007|gb|EDN97745.1| hypothetical protein SS1G_12599 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 608

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNT-RVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +  +R++++    G WS +  +      +++ +   IDI  + P       + D  D  +
Sbjct: 282 RPPKRVLEVACGTGFWSVMCHKHFAHKGHSSIQFTGIDIAPLAP-------RMDADDDMN 334

Query: 125 WEFIRQAIGGNPDLVLSDMAY--PTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           W F++  +   P     +            I   +     +A     L +L  GG  +++
Sbjct: 335 WRFVQHDLRKTPLPFRDEEFSLIMVKDMSMILSTKDNERSQALMDEYLRILKPGG--VLE 392

Query: 183 TFQGGTT 189
            + G  T
Sbjct: 393 VWDGDHT 399


>gi|302678097|ref|XP_003028731.1| hypothetical protein SCHCODRAFT_59858 [Schizophyllum commune H4-8]
 gi|300102420|gb|EFI93828.1| hypothetical protein SCHCODRAFT_59858 [Schizophyllum commune H4-8]
          Length = 347

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 44/161 (27%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             A+ E + A       Q+N     L+   R++D+G   G  ++  AR          ++
Sbjct: 78  SLARHEHYLA------AQMN-----LRPKMRVLDIGCGVGGPAREIARFADVE-----II 121

Query: 100 AIDILDMEPILG------------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            ++  D +                VKF K DF+ L + +F   A      +  +  A   
Sbjct: 122 GLNNNDFQVARARQYTKEAGLENQVKFVKGDFMKL-AEQFGENAFDAVYAVEATCHAPSF 180

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            G                     ++L  GG F    +    
Sbjct: 181 AGVYGEV---------------FKVLKPGGVFGCYEWVMTD 206


>gi|330723274|gb|AEC45644.1| hypothetical protein SRH_00375 [Mycoplasma hyorhinis MCLD]
          Length = 238

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           Q + + +R AYKLL   E  ++   N+ I+D+G+S G +SQ  +   G+       V  +
Sbjct: 50  QKKEFVSRGAYKLLAAIEAFKLDFENKVILDIGASTGGFSQ-VSLNYGAKLVYALDVGNN 108

Query: 103 ILDME 107
            LD +
Sbjct: 109 QLDYK 113


>gi|302678093|ref|XP_003028729.1| hypothetical protein SCHCODRAFT_85906 [Schizophyllum commune H4-8]
 gi|300102418|gb|EFI93826.1| hypothetical protein SCHCODRAFT_85906 [Schizophyllum commune H4-8]
          Length = 347

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 44/161 (27%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             A+ E + A       Q+N     L+   R++D+G   G  ++  AR          ++
Sbjct: 78  SLARHEHYLA------AQMN-----LRPKMRVLDIGCGVGGPAREIARFADVE-----II 121

Query: 100 AIDILDMEPILG------------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            ++  D +                VKF K DF+ L + +F   A      +  +  A   
Sbjct: 122 GLNNNDFQVARARQYTKEAGLENQVKFVKGDFMKL-AEQFGENAFDAVYAVEATCHAPSF 180

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            G                     ++L  GG F    +    
Sbjct: 181 AGVYGEV---------------FKVLKPGGVFGCYEWVMTD 206


>gi|254482745|ref|ZP_05095983.1| ubiquinone/menaquinone biosynthesis methyltransferases subfamily
           protein [marine gamma proteobacterium HTCC2148]
 gi|214037104|gb|EEB77773.1| ubiquinone/menaquinone biosynthesis methyltransferases subfamily
           protein [marine gamma proteobacterium HTCC2148]
          Length = 249

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 19/143 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV-----KFFKFDFL 120
           +    ++D+    G    +AA+ +       RVV  DI D    +G         + +  
Sbjct: 60  RKGNAVLDIAGGTG---DLAAKFSRIVGPEGRVVLADINDSMLQVGRDKLLDTGHQGNIE 116

Query: 121 DLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
            + +          + D +        +  + +           A    L +L  GG  L
Sbjct: 117 FVQADAQFLPFPDESFDCITIAFGLRNVTEKDL-----------ALRSMLRVLKPGGRLL 165

Query: 181 VKTFQGGTTNDILCLLKKHFQKV 203
           V  F    +  +      +  +V
Sbjct: 166 VLEFSKPQSELLSKAYDTYSFRV 188


>gi|71416164|ref|XP_810123.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874609|gb|EAN88272.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 427

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 27/162 (16%)

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIG 133
            G S    + +A R+     +  R +A+D               DF D  + E +     
Sbjct: 24  SGCSGSGKTVLANRLVELLNSPLRPIAVD---------------DFFDEATCEALGTW-- 66

Query: 134 GNPDLVLSDMAYPTIGH---RKIDHLRTMSLCEAATFFALEMLN--IGGDFLVKTFQGGT 188
            +P  + S      +     R      + + C      A   L     G     + +G  
Sbjct: 67  EDPRCIRSRDYARFLCEIRKRLQSDGLSAAECLQDLAGASAFLRSQPAGSLAKFSSRGSP 126

Query: 189 TN----DILCLLKKHFQKVIHVKPVASRAESVE-MFLLAKGF 225
            +    + L      FQ        + R E+ E ++++ +GF
Sbjct: 127 LDASSREHLGEFAASFQYTTEAVASSERCENKETIYVICEGF 168


>gi|302678099|ref|XP_003028732.1| hypothetical protein SCHCODRAFT_59582 [Schizophyllum commune H4-8]
 gi|300102421|gb|EFI93829.1| hypothetical protein SCHCODRAFT_59582 [Schizophyllum commune H4-8]
          Length = 347

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 44/161 (27%)

Query: 40  QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
             A+ E + A       Q+N     L+   R++D+G   G  ++  AR          ++
Sbjct: 78  SLARHEHYLA------AQMN-----LRPKMRVLDIGCGVGGPAREIARFADVE-----II 121

Query: 100 AIDILDMEPILG------------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPT 147
            ++  D +                VKF K DF+ L + +F   A      +  +  A   
Sbjct: 122 GLNNNDFQVARARQYTKEAGLENQVKFVKGDFMKL-AEQFGENAFDAVYAVEATCHAPSF 180

Query: 148 IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGT 188
            G                     ++L  GG F    +    
Sbjct: 181 AGVYGEV---------------FKVLKPGGVFGCYEWVMTD 206


>gi|187477196|ref|YP_785220.1| trans-aconitate 2-methyltransferase [Bordetella avium 197N]
 gi|115421782|emb|CAJ48293.1| trans-aconitate 2-methyltransferase [Bordetella avium 197N]
          Length = 257

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 21/117 (17%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWE 126
           RR+VDLG  PG+ ++V A        +    + D++    + + GV F + D    +  E
Sbjct: 32  RRVVDLGCGPGNSTEVLAARFPQAEVSGMDSSQDMVLAARQRMPGVAFSQADIATWNPPE 91

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
                   + D++L++ +   +      + R +S            L  GG   V+T
Sbjct: 92  --------SFDVILANASLQWVPDHATLYPRLLSK-----------LAPGGSLAVQT 129


>gi|329755814|gb|AEC04365.1| methyltransferase [Chitinophaga sancti]
          Length = 275

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 17/127 (13%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
           L+Q     + L  N  + D+G  PG +S   A+          V   D     P+     
Sbjct: 39  LIQ-----RFLPKNGVVADVGGGPGVYSAWMAKAGYE------VYLFD-----PVPKHIE 82

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRK-IDHLRTMSLCEAATFFALEML 173
                         +  +G    L L+D +   +     + HL+      AA   A  +L
Sbjct: 83  QATKKAAKYKKNPFKAILGEARKLDLADASADVVILHGPLYHLQEKKDRIAALREAYRVL 142

Query: 174 NIGGDFL 180
             GG  L
Sbjct: 143 KPGGVLL 149


>gi|256843717|ref|ZP_05549205.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256615137|gb|EEU20338.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
          Length = 391

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 28/143 (19%)

Query: 65  LQSNRRIVDLGSSPGS-WSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD-- 121
           L+   ++++LG+  G+ WSQ   ++                      GV     D  +  
Sbjct: 173 LKPGMKVLELGAGNGALWSQNITKV--------------------PAGVTVVLSDISEGM 212

Query: 122 -LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM----SLCEAATFFALEMLNIG 176
             D+ + I         +  +           +     M                +L  G
Sbjct: 213 LADAKKAIGDHSQFQYGVFDAQKIPFADSTFDLIIANHMLFYCDNIPQTLKEVHRVLKPG 272

Query: 177 GDFLVKTFQGGTTNDILCLLKKH 199
             F+  T+     ++I  L++ +
Sbjct: 273 ASFVCSTYSKEHMHEITDLVRNY 295


>gi|302683420|ref|XP_003031391.1| hypothetical protein SCHCODRAFT_56680 [Schizophyllum commune H4-8]
 gi|300105083|gb|EFI96488.1| hypothetical protein SCHCODRAFT_56680 [Schizophyllum commune H4-8]
          Length = 295

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 29/138 (21%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME---------------PIL 110
           +S  RI+DLG   G  +   AR  G +   + V A   +  +               P+ 
Sbjct: 54  KSGERILDLGCGTGELTATLARAVGPDGYVSGVDASANMVAKAREVVAASRAETSHVPMA 113

Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
            V     D     + +   +  G    +  +   +                  AA   A 
Sbjct: 114 PVDLLVAD---AQTLQLSPEQEGTFDAVFSNATLHWCSRDP-----------LAALQSAA 159

Query: 171 EMLNIGGDFLVKTFQGGT 188
             L  GG F  +    G 
Sbjct: 160 RALRPGGRFAAEMGGMGN 177


>gi|256810236|ref|YP_003127605.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256793436|gb|ACV24105.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 383

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 63  QILQSNRRIVDLGSSPGSWSQVAARITGS--NANNTRVVAIDILDMEPILGVKFFKFDFL 120
           + ++   R++D+    G +S  AA         + ++       +   +  +   K++F+
Sbjct: 205 RFVKEGDRVLDICCYTGGFSVHAAIRGAEVVGVDLSKKALKTAEENMELNNIPKDKYEFI 264

Query: 121 DLDSWEFIRQAI--GGNPDLVLSDMAYPTIGHRKIDHL--RTMSLCEAATFFALEM 172
           + +++E +++ I  G   D+V+ D    T     I +      SL       A  +
Sbjct: 265 EGNAFEVMKEFIEDGEKFDVVVLDPPAFTQTEEDIKNALRAYASLNYLGIKLAKRI 320


>gi|159040434|ref|YP_001539687.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157919269|gb|ABW00697.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 246

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 16/127 (12%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L +  R++DL   PG + +  AR          V  +D+         +  K        
Sbjct: 38  LPTGSRVLDLCCGPGIYLEPLARRGHQ------VTGVDLSPAMLERAQEVCKE---SDPP 88

Query: 125 WEFIRQAIGGNPDLVLSDMAYPT--IGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
            E +R  +G        D+A           +H R M +           L  GG  +++
Sbjct: 89  VELVRGDMGEFVRPGAFDVALNMYSSFGYFAEHERNMQVLR---NIHTS-LAPGGKLVLE 144

Query: 183 TFQGGTT 189
            F G   
Sbjct: 145 VF-GKEF 150


>gi|84626018|ref|YP_453390.1| oxidoreductase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84369958|dbj|BAE71116.1| oxidoreductase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 388

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
            + ++DL  + G ++  AA    S      +    I   +    +   +  F+  D + +
Sbjct: 216 GKTVLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIFPW 275

Query: 128 IRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +R A   G   D+V+ D A  T    ++       L       AL ++  GG F   +  
Sbjct: 276 LRDASNRGEQFDVVILDPAKMTRDRAQVIPALKKYLDMN--KLALGVVKPGGLFATFSCT 333

Query: 186 G-GTTNDILCLLKK 198
           G     + L +L++
Sbjct: 334 GLVAEQEFLDMLRR 347


>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
 gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
          Length = 448

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 17/129 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-----------LDMEPILGVKF 114
           Q    ++DL S+PG  +   A +  +      +VA D+            +   I  V+ 
Sbjct: 253 QPKDIVLDLCSAPGGKTTHLAELMANQGE---IVANDLHEDKLELIERNCNRLGIRIVRT 309

Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF---ALE 171
              D   L   +   + +   P   L  +A       +       SL E        A  
Sbjct: 310 RAGDGRSLKFEKKFDRILVDAPCSGLGMIAKKPEIKWQKKPQDIDSLAELQLELLNNAGR 369

Query: 172 MLNIGGDFL 180
            L   G+ +
Sbjct: 370 FLKPKGELV 378


>gi|269956398|ref|YP_003326187.1| type 12 methyltransferase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305079|gb|ACZ30629.1| Methyltransferase type 12 [Xylanimonas cellulosilytica DSM 15894]
          Length = 276

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 10/136 (7%)

Query: 56  LQINEKH--QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           L+++ +   + ++   R++++G+ PG ++   A +      +  VV  DI  ++  L  +
Sbjct: 34  LEVHRRFLARFIRPGSRVLEIGAGPGRFTTELAAL------SATVVVTDISSVQLDLNKR 87

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
           +      D ++    R+ +        +D  +  +              E+A    L + 
Sbjct: 88  YVGA--TDAEAAVEARELLDVCDVSRFNDGEFDAVVAYGGPLSYAFEETESALRGLLRIT 145

Query: 174 NIGGDFLVKTFQGGTT 189
             GG  +        T
Sbjct: 146 AAGGVVVGSVMSMLGT 161


>gi|149243487|pdb|2PX8|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           And 7m-Gtp
 gi|149243488|pdb|2PX8|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           And 7m-Gtp
          Length = 269

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL  + E+ + +Q    +VDLG   G WS  AA +                    
Sbjct: 56  SRGTAKLRWLVER-RFVQPIGXVVDLGCGRGGWSYYAATMXNVQEVRGYTXGG---PGHE 111

Query: 109 ILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
              +      + + + S   +        D +L D+   +    +I+  RT         
Sbjct: 112 EPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIG-ESSPSAEIEEQRT----LRILE 166

Query: 168 FALEMLNIG-GDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L+ G  +F +K          + L  L++ F   +   P+ SR  + EM+ +
Sbjct: 167 MVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRVPL-SRNSNHEMYWV 222


>gi|146297478|ref|YP_001181249.1| methyltransferase type 11 [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145411054|gb|ABP68058.1| Methyltransferase type 11 [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 201

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 26/141 (18%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNAN------NTRVVAIDILDME 107
           K+ +I EK Q L+   +++D+G   G   +   +  G   +      + +++       +
Sbjct: 24  KVNEIIEKIQ-LKKGDKVLDVGCGTGVLIEYILKFVGQQGSYLGVDISKKMIERAEEKYK 82

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
            I  V F   D +DL   E+    I  +    + D                    E A  
Sbjct: 83  DIENVDFVCCDVVDLSFKEYFDAIICYSVFPHIEDK-------------------EMAVK 123

Query: 168 FALEMLNIGGDFLVKTFQGGT 188
              +ML  GG   +   Q   
Sbjct: 124 KFSQMLKEGGKLAIAHSQSRD 144


>gi|189194391|ref|XP_001933534.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979098|gb|EDU45724.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 367

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           +  +R++D+G   G W         +     RV  ID+  ++P      V FF  D    
Sbjct: 109 KRPKRMLDIGCGTGKWCFE----MANEFPKCRVEGIDLSPIQPKISCDNVDFFMDDITRP 164

Query: 123 D 123
           +
Sbjct: 165 E 165


>gi|50548711|ref|XP_501825.1| YALI0C14388p [Yarrowia lipolytica]
 gi|49647692|emb|CAG82136.1| YALI0C14388p [Yarrowia lipolytica]
          Length = 265

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGVKFFKFDFLDLDS 124
           QS+  I+D+G   G  +Q  ++   S      +  ID   +M  +   +    + +D   
Sbjct: 31  QSSDSILDIGCGDGKLTQDLSKRCES------IFGIDNSSNMVELSQSRGLNAEVVDCSK 84

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
            +    +         S +      H  +   +T S   A       +L  GG F+ +  
Sbjct: 85  LDQWNHSHKY------SKVFSNATFHWILSQTKTDSQRVAVFKKIHHLLQPGGTFVCEMG 138

Query: 185 QGGTTNDILCLL 196
             G   +I    
Sbjct: 139 GFGNVAEIQAAF 150


>gi|240274063|gb|EER37581.1| methyltransferase [Ajellomyces capsulatus H143]
 gi|325095552|gb|EGC48862.1| methyltransferase [Ajellomyces capsulatus H88]
          Length = 342

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 23/121 (19%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  I    +R++D G++ G+W+            +  V+  D+  ++P       KF+  
Sbjct: 98  RAPITAKPKRVLDFGTATGAWAM----DFADEFQSATVIGNDLSPIQPSWVPPNCKFYV- 152

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                D             D + +     +I    + +             AL+ L  GG
Sbjct: 153 ----DDVESEWVYTPNEAFDFIHARGMGGSIKDWNMLY-----------NRALQHLKPGG 197

Query: 178 D 178
            
Sbjct: 198 W 198


>gi|154271790|ref|XP_001536748.1| hypothetical protein HCAG_08530 [Ajellomyces capsulatus NAm1]
 gi|150409418|gb|EDN04868.1| hypothetical protein HCAG_08530 [Ajellomyces capsulatus NAm1]
          Length = 273

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 23/121 (19%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  I    +R++D G++ G+W+            +  V+  D+  ++P       KF+  
Sbjct: 100 RAPITAKPKRVLDFGTATGAWAM----DFADEFQSATVIGNDLSPIQPSWVPPNCKFYV- 154

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                D             D + +     +I    + +             AL+ L  GG
Sbjct: 155 ----DDVESEWVYTPNEAFDFIHARGMGGSIKDWNMLY-----------NRALQHLKPGG 199

Query: 178 D 178
            
Sbjct: 200 W 200


>gi|58584248|ref|YP_203264.1| oxidoreductase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58428842|gb|AAW77879.1| oxidoreductase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 450

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM----EPILGV--KFFKFDFLD 121
            + ++DL  + G ++  AA   G++      +  D++ +      +  V  KF + D   
Sbjct: 278 GKTVLDLCCNTGGFAVYAAAR-GASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIF- 335

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
              W       G   D+V+ D A  T    ++       L       AL ++  GG F  
Sbjct: 336 --PWLRDASNRGEQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFAT 391

Query: 182 KTFQG-GTTNDILCLLKK 198
            +  G     + L +L++
Sbjct: 392 FSCTGLVAEQEFLDMLRR 409


>gi|33866445|ref|NP_898004.1| putative sarcosine-dimethylglycine methyltransferase [Synechococcus
           sp. WH 8102]
 gi|33633223|emb|CAE08428.1| putative sarcosine-dimethylglycine methyltransferase [Synechococcus
           sp. WH 8102]
          Length = 280

 Score = 36.0 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 30/139 (21%)

Query: 50  RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
           R+ + LL + +    L     +VDLG+  G  S+  AR +                    
Sbjct: 53  RTVHALLDLADP---LPQGGCVVDLGAGYGGASRRLARWSE------------------- 90

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR--TMSLCEAATF 167
             V       ++ D    +    G    + + D ++  +           +      A  
Sbjct: 91  RPVHAINISAVENDRHRRLNVDAGLEQQITVHDASFEQVPMADASADLVWSQDAILHAGD 150

Query: 168 FAL------EMLNIGGDFL 180
            A        +L  GG F+
Sbjct: 151 RAKVLAEVSRLLKPGGCFV 169


>gi|332705895|ref|ZP_08425969.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
 gi|332355299|gb|EGJ34765.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
          Length = 208

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 16/115 (13%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           + S  +++DL    G  +Q    ++        V  +DI  +      +           
Sbjct: 43  IHSGTKVLDLCCGSGQATQFLVELSEH------VTGLDISPLSLERARRNVP-------- 88

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
                   G    +   D  +  +      H  T  + +        +L  GG F
Sbjct: 89  --QANYVEGLAEQMPFPDAQFDIVHTSAALHEMTPEVLQQIIQEVYRVLKPGGVF 141


>gi|178941741|gb|ABX57743.1| RNA polymerase [Atlantic salmon paramyxovirus]
          Length = 2209

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 119  FLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                    FI  ++      +V SDM   +        +       + T  A  + +   
Sbjct: 1880 IGSDTCERFITDSLCDDRVSIVHSDMEGGSGKDEDAVMIEQ----YSVTRIAYRVGSDDV 1935

Query: 178  DFLVKT--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
              + K     G   + +L +L K++  V  +    S   S+E++++  G
Sbjct: 1936 TLVTKLAPRLGSAWHRVLVMLIKYWGVVQMISLRTSNPSSMEVYVVCSG 1984


>gi|158426900|gb|ABW38056.1| L protein [Atlantic salmon paramyxovirus]
          Length = 2208

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 119  FLDLDSWEFIRQAI-GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                    FI  ++      +V SDM   +        +       + T  A  + +   
Sbjct: 1879 IGSDTCERFITDSLCDDRVSIVHSDMEGGSGKDEDAVMIEQ----YSVTRIAYRVGSDDV 1934

Query: 178  DFLVKT--FQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
              + K     G   + +L +L K++  V  +    S   S+E++++  G
Sbjct: 1935 TLVTKLAPRLGSAWHRVLVMLIKYWGVVQMISLRTSNPSSMEVYVVCSG 1983


>gi|269215676|ref|ZP_06159530.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Slackia
           exigua ATCC 700122]
 gi|269131163|gb|EEZ62238.1| ribosomal RNA small subunit methyltransferase F
           (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Slackia
           exigua ATCC 700122]
          Length = 345

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 19/134 (14%)

Query: 66  QSNRRIVDLGSSPGS-WSQVAARITGSNANNTRVVAIDILDMEPILG------------- 111
           + +  I+D+ ++PG   +Q+AA            V I   +M                  
Sbjct: 134 RPDTDILDMCAAPGGKTTQIAAFAAAKARAGAPEVRITACEMHAPRSEKLAYNLKRQGAH 193

Query: 112 -VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA----T 166
            V   + D   +D++      +   P      M               +  C AA     
Sbjct: 194 AVTVMRTDARRIDAFFRFDHILLDAPCTGSGTMRAHDPKAAARFTPHLLKKCAAAQRALL 253

Query: 167 FFALEMLNIGGDFL 180
             AL +L  GG  +
Sbjct: 254 DRALTVLKPGGTMV 267


>gi|268608473|ref|ZP_06142200.1| hemolysin A [Ruminococcus flavefaciens FD-1]
          Length = 261

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 45  EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
           E +  R A KL +  E+  +    +  +D+G+S G ++ +  +  G+       V  D L
Sbjct: 55  EKYVGRGALKLEKAAEEFGLDFGGKVCLDIGASTGGFTDLMLK-NGAAKVFAVDVGHDQL 113

Query: 105 --DMEPILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMA 144
              +     V   +  D  ++ + +     +GG  D + +D++
Sbjct: 114 AESLRNDERVVNLEGTDIRNITAED-----LGGQADFICADVS 151


>gi|254464340|ref|ZP_05077751.1| methyltransferase type 11 [Rhodobacterales bacterium Y4I]
 gi|206685248|gb|EDZ45730.1| methyltransferase type 11 [Rhodobacterales bacterium Y4I]
          Length = 199

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L +  RI+DLG  PG W   AAR         +V A+D    M  +    F     +++ 
Sbjct: 40  LPAGARILDLGCGPGHW---AARFKEKG---FKVSAMDASPQMAELARANF--GIEVEVA 91

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEMLNIGGDFL-- 180
           ++E ++     + D + ++ +        +  HL  +             LN GG F   
Sbjct: 92  TFEALKH--KRSFDGIWANFSLLHAPRADLPGHLAQVH----------RALNPGGIFHIG 139

Query: 181 VKTFQGGTTNDI 192
           +K   G   + +
Sbjct: 140 MKLGDGEGRDKL 151


>gi|291520682|emb|CBK75903.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Butyrivibrio fibrisolvens 16/4]
          Length = 263

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 33/156 (21%)

Query: 68  NRRIVDLGSSPGSWSQVAARITG------------SNANNTRVVAIDILDMEPILGVKFF 115
             + +D+G   G+ +   A+                 A+ ++ +  +    E +  V F 
Sbjct: 96  GGKCLDVGCGSGALTIACAKKNPNAEFVGIDRWGKEYASFSKNLCENNAKAEGVSNVSFG 155

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           + D   L         +    D V S+  Y  I  +     R   L E      L  L  
Sbjct: 156 QGDATKLS-------FVDETFDAVTSNYVYHNIPSKD----RQAILLET-----LRTLKK 199

Query: 176 GGDFLVKTFQG----GTTNDILCLLKKH-FQKVIHV 206
           GG F +         G     +  LK   +++V  +
Sbjct: 200 GGTFAIHDIMSKGKYGDMEAFVKQLKDMGYEEVKLI 235


>gi|160915114|ref|ZP_02077327.1| hypothetical protein EUBDOL_01122 [Eubacterium dolichum DSM 3991]
 gi|158432913|gb|EDP11202.1| hypothetical protein EUBDOL_01122 [Eubacterium dolichum DSM 3991]
          Length = 260

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 16/125 (12%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R+ +KL  + +  +I   +R  +D+G+S G +S V  R         RV A+D+   + 
Sbjct: 59  SRAGFKLYDVLKDFEICLQDRICIDVGASTGGFSDVCLRQGAK-----RVYAVDVGHDQL 113

Query: 109 ILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKID-HLRTMSLCEAATF 167
           +            L     I    G N   +  DM  P      +D    ++ L   A  
Sbjct: 114 LE----------HLKQDPRIVNMEGVNCRYLTKDMFSPQPDFACMDVSFISVKLILPALI 163

Query: 168 FALEM 172
             ++ 
Sbjct: 164 SCMKH 168


>gi|145244361|ref|XP_001394637.1| ubiquinone biosynthesis methyltransferase coq5 [Aspergillus niger
           CBS 513.88]
 gi|134079327|emb|CAK96956.1| unnamed protein product [Aspergillus niger]
          Length = 315

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 26/178 (14%)

Query: 30  LNRHINDPYVQRAQL-EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPG----SWSQV 84
           ++R   D +V+         +R          +H        I+D+    G         
Sbjct: 85  IHRLWKDHFVRSLNPGSALPSR----------EHDTAGRGWNILDIAGGTGDIAFRMLDH 134

Query: 85  AARITGSNANNTRVVAIDILDMEPILGVKF-FKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
           A  I   N + TRV   DI       G K   +  + + +   F++      P +     
Sbjct: 135 ATNIN--NDHETRVTIADINPDMLAEGQKRSVQTPYYNTNRLSFMQGNAQSMPSI----- 187

Query: 144 AYPTIGHRKIDHLRTMSLC--EAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKH 199
                           +    +AA   A  +L  GG F    F          + K+ 
Sbjct: 188 -PDNSVDLYTVVFGIRNFTDKQAALNEAFRVLKPGGVFACMEFSKVDNALFNAVYKQW 244


>gi|255505682|ref|ZP_05347531.3| rRNA methylase [Bryantella formatexigens DSM 14469]
 gi|255266515|gb|EET59720.1| rRNA methylase [Bryantella formatexigens DSM 14469]
          Length = 562

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 29/152 (19%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL-----GVKFFKFDFLD 121
              R++DL ++PG     A  +         +VA DI             V      F+ 
Sbjct: 111 PGDRVLDLCAAPGG---KATELGAKLRGEGLLVANDISASRAKALLKNIEVFGISNAFVT 167

Query: 122 LDSWEFIRQAIGGNPDLVLSD---------------MAYPTIGHRKIDHLRTMSLCEAAT 166
            +    + +      D +L D                    +        +   +   A 
Sbjct: 168 NEVPAKLAEQFPEFFDKILVDAPCSGEGMFRKDPAAAGAWDVKKSFACAKQQKEIILRAA 227

Query: 167 FFALEMLNIGGDFL--VKTFQGGTTNDILCLL 196
               +ML  GG  L    TF       ++  L
Sbjct: 228 ----QMLAPGGLLLYSTCTFSPEENEQVIAYL 255


>gi|57168173|ref|ZP_00367312.1| hemolysin (tly) [Campylobacter coli RM2228]
 gi|305431680|ref|ZP_07400849.1| ribosomal RNA large subunit methyltransferase J [Campylobacter coli
           JV20]
 gi|57020547|gb|EAL57216.1| hemolysin (tly) [Campylobacter coli RM2228]
 gi|304445275|gb|EFM37919.1| ribosomal RNA large subunit methyltransferase J [Campylobacter coli
           JV20]
          Length = 249

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
           + +R+A+KL    E H I  +N+  +D+GSS G + Q+   
Sbjct: 69  YVSRAAFKLKYFLENHNINIANKTCLDIGSSTGGFVQILLE 109


>gi|257425535|ref|ZP_05601960.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428194|ref|ZP_05604592.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430824|ref|ZP_05607206.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433582|ref|ZP_05609940.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436424|ref|ZP_05612471.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282911048|ref|ZP_06318850.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914260|ref|ZP_06322047.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282919183|ref|ZP_06326918.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924367|ref|ZP_06332041.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus C101]
 gi|293501286|ref|ZP_06667137.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293510247|ref|ZP_06668955.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526842|ref|ZP_06671526.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271992|gb|EEV04130.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275035|gb|EEV06522.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278952|gb|EEV09571.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281675|gb|EEV11812.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284706|gb|EEV14826.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313754|gb|EFB44147.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus C101]
 gi|282316993|gb|EFB47367.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus C427]
 gi|282322328|gb|EFB52652.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324743|gb|EFB55053.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|290920400|gb|EFD97464.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096291|gb|EFE26552.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467191|gb|EFF09709.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus M809]
 gi|312438126|gb|ADQ77197.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 241

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++  GS    T +      + +       +  VK    D 
Sbjct: 48  RKGTKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPVFKQMYALYFKFV 173


>gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 420

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 18/127 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLD 123
           Q    ++DL ++PG  +   A      A    V A+DI +  M  +           DL 
Sbjct: 228 QPGEAVLDLCAAPGGKTMQLA------AAGAEVTAVDISEHRMARVGENLARCGLSADLV 281

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRK----------IDHLRTMSLCEAATFFALEML 173
           + + +    G    ++L      T   R+           D      L E     AL ML
Sbjct: 282 TMDALEYEGGPFDAILLDAPCTATGTIRRHPDLPYAKDGSDFPGLFELQEHLIDRALGML 341

Query: 174 NIGGDFL 180
             GG  +
Sbjct: 342 KPGGRLV 348


>gi|162457178|ref|YP_001619545.1| hypothetical protein sce8893 [Sorangium cellulosum 'So ce 56']
 gi|161167760|emb|CAN99065.1| hypothetical protein sce8893 [Sorangium cellulosum 'So ce 56']
          Length = 228

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL----DMEPILGVKFFKFDFLDL 122
                +++G+  GS +   A   G       VVA+D+     D  P  GV+  + D   L
Sbjct: 3   PGWSCLEVGAGAGSIACWMAERVGLEGE---VVAVDLDVGFMDASPPPGVRIIEGDIRQL 59

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
           +        +     LV              D    +    AA       L  GG  +
Sbjct: 60  NFHAARFDLVHARYVLV-----------HNADFQDLLDAMLAA-------LKPGGHLV 99


>gi|166714245|ref|ZP_02245452.1| oxidoreductase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 388

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
            + ++DL  + G ++  AA    S      +    I   +    +   +  F+  D + +
Sbjct: 216 GKTVLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIFPW 275

Query: 128 IRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +R A   G   D+V+ D A  T    ++       L       AL ++  GG F   +  
Sbjct: 276 LRDASNRGEQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFATFSCT 333

Query: 186 G-GTTNDILCLLKK 198
           G     + L +L++
Sbjct: 334 GLVAEQEFLDMLRR 347


>gi|225557823|gb|EEH06108.1| methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 273

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 23/121 (19%)

Query: 61  KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKF 117
           +  I    +R++D G++ G+W+            +  V+  D+  ++P       KF+  
Sbjct: 29  RAPITAKPKRVLDFGTATGAWAM----DFADEFQSATVIGNDLSPIQPSWVPPNCKFYV- 83

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                D             D + +     +I    + +             AL+ L  GG
Sbjct: 84  ----DDVESEWVYTPNEAFDFIHARGMGGSIKDWNMLY-----------NRALQHLKPGG 128

Query: 178 D 178
            
Sbjct: 129 W 129


>gi|225018806|ref|ZP_03707998.1| hypothetical protein CLOSTMETH_02756 [Clostridium methylpentosum
           DSM 5476]
 gi|224948534|gb|EEG29743.1| hypothetical protein CLOSTMETH_02756 [Clostridium methylpentosum
           DSM 5476]
          Length = 276

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 70  RIVDLGSSPG----SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
            ++D+G  PG     +++   R+ G + ++  +    +      L + +F  D+L+L   
Sbjct: 69  SVLDIGCGPGLYTERYAKKGYRVVGVDFSHRSINYAQMSAKRKGLPIDYFYQDYLNLSLD 128

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +           ++  D    +   RK                  + L  GG FL+  F 
Sbjct: 129 KKF-----DFATMIYCDFGALSTNDRK-----------QLLKIIYQHLKPGGRFLLDVFS 172

Query: 186 GGTTNDILC 194
                +   
Sbjct: 173 LTQLENFQE 181


>gi|120609471|ref|YP_969149.1| cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax citrulli
           AAC00-1]
 gi|120587935|gb|ABM31375.1| Cyclopropane-fatty-acyl-phospholipid synthase [Acidovorax citrulli
           AAC00-1]
          Length = 442

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 29  WL--NRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
           WL   R  +  Y + A +   +A+ A KL  I  K ++     R +D+G+  G     AA
Sbjct: 145 WLDPRRVYSCAYYRDAGMALAQAQEA-KLDHICRKLRLA-PGDRFLDIGAGWGGLLLWAA 202

Query: 87  RITGSNANNTRVVAIDILDMEPIL-------GVKFFKFDFLDLDSWEF 127
              G       +       +  ++        V+    D+ DL   E 
Sbjct: 203 EHYGVEGTGITLSRNQHAHVTRLIEEKGLSGRVRMLLCDYRDLPRTEE 250


>gi|126656192|ref|ZP_01727576.1| hypothetical protein CY0110_03879 [Cyanothece sp. CCY0110]
 gi|126622472|gb|EAZ93178.1| hypothetical protein CY0110_03879 [Cyanothece sp. CCY0110]
          Length = 328

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 14/127 (11%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L     ++D+G   G  S++ A+  G       +    +   + +   +    DF   D+
Sbjct: 89  LPQGTTVLDVGCGIGGSSRILAKDYGFAVTGVTISPQQVKRAQELTP-EGVTADFKVDDA 147

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
                     + D+V S  A P +  +       M            +L  GG  +V  +
Sbjct: 148 LAL--SFPDNSFDVVWSIEAGPHMEDKAKYAEEMM-----------RVLKPGGILVVADW 194

Query: 185 QGGTTND 191
                  
Sbjct: 195 NQRDDRQ 201


>gi|305666214|ref|YP_003862501.1| hypothetical protein FB2170_08054 [Maribacter sp. HTCC2170]
 gi|88708205|gb|EAR00442.1| hypothetical protein FB2170_08054 [Maribacter sp. HTCC2170]
          Length = 211

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 19/130 (14%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EPILGVKFFKFDFLD 121
           +L  N  I++LG  PG+ +Q               +A  +L +  +     +FFK D  +
Sbjct: 38  LLPQNANILELGCGPGNVTQYVLNKRPDLHITGTDLASKMLALAKKNNPDAEFFKLDCRE 97

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
           + +      AI          +    + +  ++   +  L          +LN  G   +
Sbjct: 98  ITTLNQKFDAI----------VGAFVMPYLNLEE--SAKLILD----CASLLNSNGTLFI 141

Query: 182 KTFQGGTTND 191
            T +G   N 
Sbjct: 142 STMEG-DYNQ 150


>gi|268554982|ref|XP_002635479.1| C. briggsae CBR-PMT-2 protein [Caenorhabditis briggsae]
 gi|187032293|emb|CAP28543.1| CBR-PMT-2 protein [Caenorhabditis briggsae AF16]
          Length = 437

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 31/159 (19%)

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN------ANNTRVVAIDILDMEPI 109
           L+I ++   L+  + ++D+G   G  ++  A   G +      ++N   +A++ L  E  
Sbjct: 213 LKIIKRFGDLKPGQTMLDIGVGIGGGARQVADEFGVHVHGIDLSSNMLAIALERLHEEKD 272

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
             VK+      D      + Q    + D V S      I        R            
Sbjct: 273 SRVKY---SITD----ALVYQFEDDSFDYVFSRDCIQHIPDTDKLFSRIY---------- 315

Query: 170 LEMLNIGG----DFLVKTF--QGGTTNDILCLLKKHFQK 202
            + L  GG        K +  Q     + +   + +F K
Sbjct: 316 -KALKPGGKVLITMYGKGYGEQSEQFKEYVAQ-RAYFLK 352


>gi|320006940|gb|ADW01790.1| Methyltransferase type 11 [Streptomyces flavogriseus ATCC 33331]
          Length = 232

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---------ILGVKFFKF 117
             RR++D+GS PG  +   AR  G+      V  +DI   +            GV+F   
Sbjct: 50  RGRRVLDIGSGPGHHAVHLARGHGA-----LVCGVDISPTQHRRATRAHRDEPGVRFLCA 104

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
           D         + +A  G       D  +
Sbjct: 105 DIAAHLRGSELYEAAYGVRTFGCIDPHH 132


>gi|188579249|ref|YP_001916178.1| oxidoreductase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523701|gb|ACD61646.1| oxidoreductase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 364

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
            + ++DL  + G ++  AA    S      +    I   +    +   +  F+  D + +
Sbjct: 192 GKTVLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIFPW 251

Query: 128 IRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +R A   G   D+V+ D A  T    ++       L       AL ++  GG F   +  
Sbjct: 252 LRDASNRGEQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFATFSCT 309

Query: 186 G-GTTNDILCLLKK 198
           G     + L +L++
Sbjct: 310 GLVAEQEFLDMLRR 323


>gi|304373102|ref|YP_003856311.1| hypothetical protein MHR_0306 [Mycoplasma hyorhinis HUB-1]
 gi|304309293|gb|ADM21773.1| hypothetical protein MHR_0306 [Mycoplasma hyorhinis HUB-1]
          Length = 238

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 43  QLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
           Q + + +R AYKLL   E  +I   N+ I+D+G+S G +SQV+      N     V A+D
Sbjct: 50  QKKEFVSRGAYKLLAAIEAFKIDFENKVILDIGASTGGFSQVSL-----NYGAKLVYALD 104

Query: 103 I 103
           +
Sbjct: 105 V 105


>gi|9633623|ref|NP_051124.1| polyprotein [Murray Valley encephalitis virus]
 gi|56757564|sp|P05769|POLG_MVEV5 RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k;
            Contains: RecName: Full=Capsid protein C; AltName:
            Full=Core protein; Contains: RecName: Full=prM; Contains:
            RecName: Full=Peptide pr; Contains: RecName: Full=Small
            envelope protein M; AltName: Full=Matrix protein;
            Contains: RecName: Full=Envelope protein E; Contains:
            RecName: Full=Non-structural protein 1; Short=NS1;
            Contains: RecName: Full=Non-structural protein 2A;
            Short=NS2A; Contains: RecName: Full=Serine protease
            subunit NS2B; AltName: Full=Flavivirin protease NS2B
            regulatory subunit; AltName: Full=Non-structural protein
            2B; Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Non-structural protein 4B; Short=NS4B;
            Contains: RecName: Full=RNA-directed RNA polymerase NS5;
            AltName: Full=Non-structural protein 5
 gi|6175827|gb|AAF05296.1| polyprotein [Murray Valley encephalitis virus]
          Length = 3434

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL  + E+ + +Q   ++VDLG   G WS  AA +                    
Sbjct: 2585 SRGTAKLRWLVER-RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG---PGHE 2640

Query: 109  ILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
               +      + + + S   +        D +L D+   +    +I+  RT         
Sbjct: 2641 EPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIG-ESSPSAEIEEQRT----LRILE 2695

Query: 168  FALEMLNIG-GDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
               + L+ G  +F +K          + L  L++ F   +   P+ SR  + EM+ +
Sbjct: 2696 MVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRVPL-SRNSNHEMYWV 2751


>gi|325109544|ref|YP_004270612.1| methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
 gi|324969812|gb|ADY60590.1| Methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
          Length = 301

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L+    +VDLG   G    +AA   G      + + ID+ + M  +      K    D  
Sbjct: 64  LRPGEVVVDLGCGGGLDVFLAAAKVGPTG---KAIGIDMTESMLELARKNAAKG--RDGQ 118

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE---AATFFALEMLNIGGDFL 180
            WE +   +    ++ L D +   I    +     ++L +   A       +L  GG   
Sbjct: 119 PWENVEFHLATIDNMPLEDASADCIISNCV-----INLVDDKPAVFREIARVLKPGGRLA 173

Query: 181 V 181
           V
Sbjct: 174 V 174


>gi|39996316|ref|NP_952267.1| tetracenomycin polyketide synthesis 8-o-methyltransferase
           [Geobacter sulfurreducens PCA]
 gi|39983196|gb|AAR34590.1| tetracenomycin polyketide synthesis 8-o-methyltransferase, putative
           [Geobacter sulfurreducens PCA]
 gi|298505326|gb|ADI84049.1| O-methyltransferase, family 2 [Geobacter sulfurreducens KN400]
          Length = 333

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 42/127 (33%), Gaps = 10/127 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L   +R++DLG  PG+W   A +    N    R V  D+    P       +F   D  S
Sbjct: 159 LSGRQRLLDLGGGPGTW---AIQFCLHNPGL-RAVVYDLPTTRPFAERTIARFGLADRVS 214

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           +E      G  P               +I H      C      A+  L  GG  +V+ F
Sbjct: 215 FEEGNFLSGEIPGRY------DVAWLSQILHSEGPEGCAVVIEKAVTALEPGGIIMVQEF 268

Query: 185 QGGTTND 191
                 D
Sbjct: 269 ILNDAKD 275


>gi|258422498|ref|ZP_05685406.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9635]
 gi|282916737|ref|ZP_06324495.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus D139]
 gi|283770542|ref|ZP_06343434.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus H19]
 gi|257847255|gb|EEV71261.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9635]
 gi|282319224|gb|EFB49576.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460689|gb|EFC07779.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus H19]
          Length = 241

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++  G     T +      + +       +  VK    D 
Sbjct: 48  RKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPVFKQMYALYFKFV 173


>gi|239579480|gb|ACR82298.1| polyprotein pp1ab [Gill-associated virus]
          Length = 943

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 4/101 (3%)

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM--SLCE-AAT 166
             +         +D    I +  G    + L D   P      I  L +    +      
Sbjct: 785 PFIPHIPGKVTSVDLVNHINKK-GPAFAIDLHDELPPGKYDTIISDLYSATPEMTFPRFL 843

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
                 L   G FL K       N I+  + +HF      K
Sbjct: 844 DILAHNLKEHGHFLFKVTNKFRHNKIIEDIAQHFSYTHIFK 884


>gi|154245090|ref|YP_001416048.1| trans-aconitate 2-methyltransferase [Xanthobacter autotrophicus
           Py2]
 gi|154159175|gb|ABS66391.1| Trans-aconitate 2-methyltransferase [Xanthobacter autotrophicus
           Py2]
          Length = 258

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 21/121 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM--EPILGVKFFKFDFLDL 122
           L     +VDLG  PG+ +Q+ A             + D+L      +   +F   D    
Sbjct: 30  LPDAGFVVDLGCGPGNSTQLLAERFPGAEVLGLDTSPDMLAAARARLPNARFEAGD---- 85

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
                    +    DL+ ++     +        R M+L           L  GG   V+
Sbjct: 86  ----ASTFTLDKPADLIFANAVLQWVPDHATLLPRLMTL-----------LAPGGVLAVQ 130

Query: 183 T 183
            
Sbjct: 131 M 131


>gi|15924461|ref|NP_371995.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927052|ref|NP_374585.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus N315]
 gi|21283089|ref|NP_646177.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486310|ref|YP_043531.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650426|ref|YP_186355.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|148267955|ref|YP_001246898.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394019|ref|YP_001316694.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221592|ref|YP_001332414.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979790|ref|YP_001442049.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509638|ref|YP_001575297.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140962|ref|ZP_03565455.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315978|ref|ZP_04839191.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732113|ref|ZP_04866278.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733282|ref|ZP_04867447.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006257|ref|ZP_05144858.2| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795474|ref|ZP_05644453.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9781]
 gi|258413282|ref|ZP_05681558.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9763]
 gi|258420611|ref|ZP_05683553.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9719]
 gi|258426806|ref|ZP_05688026.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9299]
 gi|258444804|ref|ZP_05693133.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A8115]
 gi|258447362|ref|ZP_05695506.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A6300]
 gi|258449753|ref|ZP_05697854.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A6224]
 gi|258451129|ref|ZP_05699164.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A5948]
 gi|258454577|ref|ZP_05702541.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A5937]
 gi|262048993|ref|ZP_06021872.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus D30]
 gi|262051640|ref|ZP_06023860.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus 930918-3]
 gi|269203096|ref|YP_003282365.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892967|ref|ZP_06301202.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A8117]
 gi|282921717|ref|ZP_06329434.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9765]
 gi|282927998|ref|ZP_06335607.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A10102]
 gi|284024469|ref|ZP_06378867.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848434|ref|ZP_06789180.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9754]
 gi|295407220|ref|ZP_06817020.1| ubiE [Staphylococcus aureus A8819]
 gi|296275332|ref|ZP_06857839.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297244644|ref|ZP_06928527.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A8796]
 gi|300911955|ref|ZP_07129398.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380946|ref|ZP_07363605.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|54039802|sp|P67062|UBIE_STAAN RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|54039803|sp|P67063|UBIE_STAAW RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|54042287|sp|P67061|UBIE_STAAM RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|56749710|sp|Q6G992|UBIE_STAAS RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|81694470|sp|Q5HFV2|UBIE_STAAC RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|166234752|sp|A7X2H6|UBIE_STAA1 RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|189037611|sp|A6U1T9|UBIE_STAA2 RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|189037612|sp|A5ISZ9|UBIE_STAA9 RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|189037613|sp|A8Z450|UBIE_STAAT RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|205829113|sp|A6QH20|UBIE_STAAE RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|13701270|dbj|BAB42564.1| menaquinone biosynthesis methyltransferase [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247242|dbj|BAB57633.1| menaquinone biosynthesis methyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204529|dbj|BAB95225.1| menaquinone biosynthesis methyltransferase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244753|emb|CAG43189.1| putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284612|gb|AAW36706.1| methlytransferase, UbiE/COQ5 family [Staphylococcus aureus subsp.
           aureus COL]
 gi|147741024|gb|ABQ49322.1| demethylmenaquinone methyltransferase [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946471|gb|ABR52407.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374392|dbj|BAF67652.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721925|dbj|BAF78342.1| menaquinone biosynthesis methyltransferase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368447|gb|ABX29418.1| possible 2-heptaprenyl-1,4-naphthoquinone methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253724160|gb|EES92889.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728822|gb|EES97551.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789446|gb|EEV27786.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9781]
 gi|257839846|gb|EEV64314.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9763]
 gi|257843559|gb|EEV67966.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9719]
 gi|257849967|gb|EEV73925.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9299]
 gi|257850297|gb|EEV74250.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A8115]
 gi|257853553|gb|EEV76512.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A6300]
 gi|257857001|gb|EEV79901.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A6224]
 gi|257861184|gb|EEV83997.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A5948]
 gi|257862960|gb|EEV85724.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A5937]
 gi|259160481|gb|EEW45505.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus 930918-3]
 gi|259162925|gb|EEW47488.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus D30]
 gi|262075386|gb|ACY11359.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940962|emb|CBI49346.1| putative 2-heptaprenyl-1,4-naphthoquinonemethyltransferase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282590295|gb|EFB95375.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A10102]
 gi|282593979|gb|EFB98968.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9765]
 gi|282764964|gb|EFC05089.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A8117]
 gi|285817151|gb|ADC37638.1| Ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus 04-02981]
 gi|294824460|gb|EFG40883.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A9754]
 gi|294967933|gb|EFG43962.1| ubiE [Staphylococcus aureus A8819]
 gi|297178674|gb|EFH37920.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus A8796]
 gi|298694760|gb|ADI97982.1| menaquinone biosynthesis methyltransferase [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300886201|gb|EFK81403.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333081|gb|ADL23274.1| putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751301|gb|ADL65478.1| putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340532|gb|EFM06467.1| ubiquinone/menaquinone biosynthesis methyltransferase UbiE
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312829861|emb|CBX34703.1| menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129186|gb|EFT85181.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315197783|gb|EFU28117.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140358|gb|EFW32214.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142715|gb|EFW34518.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439528|gb|EGA97249.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus O11]
 gi|323442233|gb|EGA99864.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus O46]
 gi|329314147|gb|AEB88560.1| Menaquinone biosynthesis methyltransferase ubiE [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723203|gb|EGG59734.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 21189]
 gi|329727566|gb|EGG64022.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329731347|gb|EGG67713.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 241

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++  G     T +      + +       +  VK    D 
Sbjct: 48  RKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPVFKQMYALYFKFV 173


>gi|152992058|ref|YP_001357779.1| hemolysin A [Sulfurovum sp. NBC37-1]
 gi|151423919|dbj|BAF71422.1| hemolysin A [Sulfurovum sp. NBC37-1]
          Length = 237

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
          YV+ A  + + +R+A KL     +H +    +  +D+GSS G ++Q+   
Sbjct: 46 YVEVADAKFYVSRAARKLESFLSEHPVEIQGKSALDIGSSTGGFAQIVLE 95


>gi|41324069|gb|AAS00078.1| 1ab [Infectious bronchitis virus]
          Length = 6631

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6402 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6447

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6448 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6507

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
               +  + +   +  +      A  A S E FL+   +
Sbjct: 6508 HESLYDISQDCAWWTMFCT---AVNASSSEAFLVGVNY 6542


>gi|282598561|gb|ADA83536.1| replicase polyprotein 1ab [Infectious bronchitis virus]
          Length = 6630

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6401 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6446

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6447 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6506

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
               +  + +   +  +      A  A S E FL+   +
Sbjct: 6507 HESLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6541


>gi|282598550|gb|ADA83526.1| replicase polyprotein 1ab [Infectious bronchitis virus]
          Length = 6630

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6401 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6446

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6447 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6506

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
               +  + +   +  +      A  A S E FL+   +
Sbjct: 6507 HESLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6541


>gi|282598539|gb|ADA83516.1| replicase polyprotein 1ab [Infectious bronchitis virus]
          Length = 6630

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6401 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6446

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6447 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6506

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
               +  + +   +  +      A  A S E FL+   +
Sbjct: 6507 HESLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6541


>gi|282598528|gb|ADA83506.1| replicase polyprotein 1ab [Infectious bronchitis virus]
          Length = 6630

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6401 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6446

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6447 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSDFLRNNLALGGSFAVKVTETSW 6506

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
               +  + +   +  +      A  A S E FL+   +
Sbjct: 6507 HESLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6541


>gi|146309099|ref|YP_001189564.1| biotin biosynthesis protein BioC [Pseudomonas mendocina ymp]
 gi|145577300|gb|ABP86832.1| pimeloyl-CoA biosynthesis protein BioC [Pseudomonas mendocina ymp]
          Length = 267

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 22/143 (15%)

Query: 69  RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL-DMEPILGV-KFFKFDFLDLDSWE 126
           +R +DLG   G +++  A    S       +A  +L    P+ G   F   D        
Sbjct: 52  QRWLDLGCGTGFFTRALAERYPSGEGVAVDIAEGMLRHARPLGGATHFIAGD-------- 103

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
               A         +D+ + ++  +     +           A  +L  GG     +   
Sbjct: 104 ----AEALPLQCTSADLLFSSLALQWCGDFQ------RVLSEARRVLRPGGVMAFSSLCV 153

Query: 187 GTTNDILCLLKKH--FQKVIHVK 207
           GT  ++    +    F  V   +
Sbjct: 154 GTLQELRDSWQAVDGFVHVNRFR 176


>gi|282598506|gb|ADA83486.1| replicase polyprotein 1ab [Infectious bronchitis virus]
          Length = 6631

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6402 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYKT 6447

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGGT 188
                DLV+SDM       RK + +   +  +        F    L +GG F VK  +   
Sbjct: 6448 EHKFDLVISDMYTDNDSKRKHEGVIANNGNDDVFIYLSNFLRNNLALGGSFAVKVTETSW 6507

Query: 189  TNDILCLLKKH-FQKVIHVKPVASRAESVEMFLLAKGF 225
               +  + +   +  +      A  A S E FL+   +
Sbjct: 6508 HESLYDIAQDCAWWTMFCT---AVNASSSEAFLVGVNY 6542


>gi|82751068|ref|YP_416809.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Staphylococcus aureus RF122]
 gi|123549226|sp|Q2YY85|UBIE_STAAB RecName: Full=Menaquinone biosynthesis methyltransferase ubiE
 gi|82656599|emb|CAI81022.1| menaquinone biosynthesis methyltransferase [Staphylococcus aureus
           RF122]
          Length = 241

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++  G     T +      + +       +  VK    D 
Sbjct: 48  RKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FGDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPAFKQMYALYFKFV 173


>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
 gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
          Length = 452

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 19/131 (14%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI---LGVKFFKFDFLDL 122
           +   RI+D  ++PG  +   A++         ++A+D+  ++               +  
Sbjct: 258 RPGERILDACAAPGGKATHLAQLMNDRGE---LLAMDVSGVKLPLIQESAHRLGISIIRT 314

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGH-------RKIDHLRTMSLCEAA------TFFA 169
              + +  A           +  P  G             LR   L   A         A
Sbjct: 315 RRADLLNSAAFPVDSFDRVLLDAPCSGLGVIRRNPEAKWRLRPEDLTRLAETQRRMFANA 374

Query: 170 LEMLNIGGDFL 180
           + ML  GG  +
Sbjct: 375 VRMLKPGGRLV 385


>gi|222151369|ref|YP_002560525.1| 2-hexaprenyl-1,4-naphthoquinone methyltransferase [Macrococcus
           caseolyticus JCSC5402]
 gi|222120494|dbj|BAH17829.1| 2-hexaprenyl-1,4-naphthoquinone methyltransferase [Macrococcus
           caseolyticus JCSC5402]
          Length = 240

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 31/151 (20%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID------ILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++  GS+ + T +   D          + I  V     + 
Sbjct: 51  KKGAKALDVCCGTGDWTIQMSQAVGSHGHVTGLDFSDNMLSVAHKKTDHIANVNLIHGNA 110

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           +DL              D          +   K                   +L  GG  
Sbjct: 111 MDLP-------FEDNTFDYTTIGFGLRNLPDYKKG-----------LEEMYRVLKPGGMI 152

Query: 180 LV-------KTFQGGTTNDILCLLKKHFQKV 203
           +V                     +   F KV
Sbjct: 153 VVLETSHPTMPVFKQGYKLYFKYIMPFFGKV 183


>gi|257095491|ref|YP_003169132.1| Cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048015|gb|ACV37203.1| Cyclopropane-fatty-acyl-phospholipid synthase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 420

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 45/204 (22%)

Query: 19  NRSCQGSSRDWLNRHI---NDPY---------VQRA--QLEGWRARSAYKLLQINEKHQI 64
           N + +  SR  +  H    ND Y            A    +  R+ +A    Q+ +  +I
Sbjct: 138 NANTRAGSRRNIMAHYDLGNDFYRQWLDPTMSYSSALYSSDAPRSMAA---AQLAKYRRI 194

Query: 65  L-----QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
           L     +  +R++++G   G +++ AAR  G       VV + +   +     +  +   
Sbjct: 195 LSRLDSRPGQRVLEIGCGWGGFAETAAREAGLE-----VVGLTLSPAQLEFARERMQIAG 249

Query: 120 LDLDS---WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL--EMLN 174
           L+          R+  G   D ++S   +  +G R                FA    +L 
Sbjct: 250 LERQVTLELRDYRELAGEPFDHIVSIEMFEAVGERWWPTY-----------FATLQRLLA 298

Query: 175 IGGDFLVKTFQGGTTNDILCLLKK 198
            GG  +V++       D+    ++
Sbjct: 299 PGGRAVVQSITIRD--DLFARYRR 320


>gi|242827123|ref|XP_002488767.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712023|gb|EED11451.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 351

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 23/118 (19%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLD 121
           L + +RI+D+G+  G W+   A    S     +V+ ID+  ++P      V+F+  D   
Sbjct: 114 LSTPQRILDIGTGTGIWAIDIADEYPS----AQVIGIDLSPIQPGWVPPNVQFYVED--- 166

Query: 122 LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
             +      A   + DL+ + +   +IG       ++ +            L   G  
Sbjct: 167 --AETEWMYADDDSFDLIHTRVMGGSIGDWDKFASQSYT-----------HLKSDGWL 211


>gi|169782960|ref|XP_001825942.1| sterol 24-C-methyltransferase [Aspergillus oryzae RIB40]
 gi|238492697|ref|XP_002377585.1| sterol 24-c-methyltransferase, putative [Aspergillus flavus
           NRRL3357]
 gi|83774686|dbj|BAE64809.1| unnamed protein product [Aspergillus oryzae]
 gi|220696079|gb|EED52421.1| sterol 24-c-methyltransferase, putative [Aspergillus flavus
           NRRL3357]
          Length = 378

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 23/133 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           ++S  +++D+G   G  ++   + T +N     +V  +  D +            +   +
Sbjct: 126 IKSGMKVLDVGCGVGGPAREICKFTDAN-----IVGFNNNDYQ------------IQRAT 168

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF------ALEMLNIGGD 178
               R+ +      V  D    +      D +  +     A            +L  GG 
Sbjct: 169 RYAEREGLSDKLSFVKGDFMQMSFPDNSFDAVYAIEATCHAPELEGVYKEIFRVLKPGGV 228

Query: 179 FLVKTFQGGTTND 191
           F V  +      D
Sbjct: 229 FGVYEWLMTDEYD 241


>gi|22003850|ref|NP_665871.1| RNA polymerase [Tioman virus]
 gi|21930311|gb|AAM82288.1| RNA polymerase [Tioman virus]
          Length = 2271

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 120  LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF---FALEMLNIG 176
             DL     +   +   P   +S M    +    I  ++   +  AA      +  +L  G
Sbjct: 1901 TDLSCAACVNLILKSIPSRSVSIM---NVDLEDITQMQNPEVSRAAINVILLSDILLMPG 1957

Query: 177  GDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
            G  + KT+        +   LL+  F + + ++   S   S E+FL+A
Sbjct: 1958 GVLIFKTYLSPFAKLSNFCKLLQIAFSRCVLLRSAYSDPASDEVFLVA 2005


>gi|213409560|ref|XP_002175550.1| methyltransferase-like protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003597|gb|EEB09257.1| methyltransferase-like protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 252

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 28/180 (15%)

Query: 20  RSCQGSSRDWLNRHINDPYVQRA-----QLEGWRARSAYKLLQINEKHQILQSN-RRIVD 73
           +  + S + W      D + +R      +   W  R      + +    I ++  R I++
Sbjct: 17  KYKRESQKSW------DKFYKRNETRFFKDRHWLNR------EFDSYFGIPENEPRTILE 64

Query: 74  LGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK--FDFLDLDSWEFIRQA 131
           +G   G+              N +V   D         V+F +   ++     + F+   
Sbjct: 65  VGCGVGNLVYPLLECQP----NLKVYCCDFSS----RAVEFVQKNENYDAEHVFPFVCDI 116

Query: 132 IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
           +       + + +  T+    +           A      +L  GG  + + +  G    
Sbjct: 117 VETPLVNFVPNASVDTVTAIFVLSAIPYERQLQAFKNISSVLKPGGHLVFRDYCEGDYAK 176


>gi|254445975|ref|ZP_05059451.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198260283|gb|EDY84591.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 338

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 27/148 (18%)

Query: 55  LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG-------SNANNTRVVAIDILDME 107
           L QI+E+   LQ  + I++LG   GS++  AA           SN+   R          
Sbjct: 101 LRQISERAN-LQDGQHILELGCGWGSFTLWAAENYPNSKITAVSNSKGQREYITGQAKRR 159

Query: 108 PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
            +  V     D    ++            D V++   +  + + +    R  S       
Sbjct: 160 GLSNVTVITADMNAFET--------DLRFDRVVTVEMFEHMRNYQTLFQRIHS------- 204

Query: 168 FALEMLNIGGDFLVKTFQGGTTNDILCL 195
                L   G   V  F       +   
Sbjct: 205 ----WLKPSGKLFVHVFSHKKVAYLFED 228


>gi|20178607|ref|NP_620045.1| polyprotein [Apoi virus]
 gi|7939634|gb|AAF70829.1|AF160193_1 polyprotein [Apoi virus]
          Length = 3371

 Score = 35.6 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 49   ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
            +R   KL  ++E+  +      +VDLGS  G WS  AA        N   +A      +P
Sbjct: 2531 SRGTSKLAWMHERGYVPLKG-VVVDLGSGRGGWSYYAAAQERVRKVNAYTLATTKGHEQP 2589

Query: 109  ILG-------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH--RKIDHLRTM 159
             L        V F K D   ++ +           D +L D+   +          L+ M
Sbjct: 2590 RLVQSYGWNLVTFKKADVRTIEPY---------PVDTLLCDIGESSSSSSIEAKRTLQIM 2640

Query: 160  SLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
             +       +      G  F +K          + L   +  F   +   P  SR  + E
Sbjct: 2641 DVVGKWLEIS-----PGASFCIKILCPYNPEVIEHLSRWQHQFGGGLVRVPH-SRNSTHE 2694

Query: 218  MFLL 221
            M+ +
Sbjct: 2695 MYFV 2698


>gi|290988548|ref|XP_002676965.1| ubiquinone/menaquinone biosynthesis methyltransferase [Naegleria
           gruberi]
 gi|284090570|gb|EFC44221.1| ubiquinone/menaquinone biosynthesis methyltransferase [Naegleria
           gruberi]
          Length = 304

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 4/133 (3%)

Query: 57  QINEKHQILQSNRRIVDLGSSPGSWSQ---VAARITGSNANNTRVVAIDILDMEPILGVK 113
           Q+ E H   Q+    +D+    G        A R        ++V+  DI      +G  
Sbjct: 93  QLIEYHYKPQAGGTYLDVAGGTGDVGFRIVEALRRNSPPGVKSKVIISDINPSMLQVGKD 152

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI-DHLRTMSLCEAATFFALEM 172
                 L   S       +  N +   S +   ++    I   +R  +  +     A  +
Sbjct: 153 NAARLKLSESSPNVEIDWLEANAEDFTSKIESNSVDGYTICFGIRNCTHIDRVLKEAYRV 212

Query: 173 LNIGGDFLVKTFQ 185
           L  GG F    F 
Sbjct: 213 LKPGGCFCCLEFS 225


>gi|24418990|ref|NP_722539.1| NS5 [Murray Valley encephalitis virus]
          Length = 905

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL  + E+ + +Q   ++VDLG   G WS  AA +                    
Sbjct: 56  SRGTAKLRWLVER-RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG---PGHE 111

Query: 109 ILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
              +      + + + S   +        D +L D+   +    +I+  RT         
Sbjct: 112 EPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIG-ESSPSAEIEEQRT----LRILE 166

Query: 168 FALEMLNIG-GDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L+ G  +F +K          + L  L++ F   +   P+ SR  + EM+ +
Sbjct: 167 MVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRVPL-SRNSNHEMYWV 222


>gi|194333728|ref|YP_002015588.1| cyclopropane fatty acyl phospholipid synthase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311546|gb|ACF45941.1| Cyclopropane-fatty-acyl-phospholipid synthase [Prosthecochloris
           aestuarii DSM 271]
          Length = 375

 Score = 35.6 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 17/130 (13%)

Query: 54  KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
           KL  I  K + L+    ++D+G   G  ++ AA   G +     V +      E + G  
Sbjct: 144 KLRLIFNKLR-LEPGMHVLDIGCGWGGAARFAAEHYGVSVTGVTVSSEQQKKAEELNGE- 201

Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
               D   +D  +     +GG+ D + S   +  +G +                     L
Sbjct: 202 -LPVDIRLIDYRD-----LGGHYDRIYSIGMFEHVGVKNYRRF---------FEITRNCL 246

Query: 174 NIGGDFLVKT 183
              G FL+ T
Sbjct: 247 KKDGLFLLHT 256


>gi|325916706|ref|ZP_08178963.1| SAM-dependent methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537055|gb|EGD08794.1| SAM-dependent methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 388

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF 127
            + ++DL  + G ++  AA    S      +    I   +    +   +  F+  D + +
Sbjct: 216 GKSVLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVRPKFVQADIFPW 275

Query: 128 IRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +R A   G   D+V+ D A  T    ++       L       AL ++  GG F   +  
Sbjct: 276 LRDAANRGEQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFATFSCT 333

Query: 186 G-GTTNDILCLLKK 198
           G     + L +L++
Sbjct: 334 GLVAEQEFLDMLRR 347


>gi|239631422|ref|ZP_04674453.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525887|gb|EEQ64888.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 443

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 23/148 (15%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           +S  R++DL ++PG  S   A   G          N   ++V++ ++       G +   
Sbjct: 92  KSGERVLDLCAAPGGKSTQLACYLGDTGLLVSNEINGPRSKVLSGNLERW----GTRQIL 147

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMA-------YPTIGHRKIDHLRT-MSLCEAATFF 168
               D D+       +     +                I +   D+        +     
Sbjct: 148 VTNNDPDTLAKAWPQMFDRILVDAPCSGEGMFRKDPDAIQYWHADYPAQCAERQKQILKA 207

Query: 169 ALEMLNIGGDFL--VKTFQGGTTNDILC 194
           A++ML  GG  +    TF       I+ 
Sbjct: 208 AVKMLAPGGTLIYSTCTFSPEEDEQIIA 235


>gi|222632206|gb|EEE64338.1| hypothetical protein OsJ_19178 [Oryza sativa Japonica Group]
          Length = 353

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 22/158 (13%)

Query: 47  WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
           WR R AY L ++++K +  +          +P   ++ A+      A            M
Sbjct: 77  WRLRGAYTLEEVDQKTREFRKAMT------TPRPVAEDASEFEKFQAMIYS------TAM 124

Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
           +  +    F  D       + IR       D +L D+           H+ T+ L    T
Sbjct: 125 KAPVAAIEFYMDVRH-TIEDHIRGFAEPTSDKLLPDLDPLN------QHIFTLVLDLNET 177

Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVI 204
               + L   G    +TF+    +  +  + K ++ V+
Sbjct: 178 LVYSDWLRERGW---RTFKRPGVDAFIEHMGKFYEVVV 212


>gi|229541629|ref|ZP_04430689.1| Methyltransferase type 12 [Bacillus coagulans 36D1]
 gi|229326049|gb|EEN91724.1| Methyltransferase type 12 [Bacillus coagulans 36D1]
          Length = 733

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 30/194 (15%)

Query: 34  INDPYVQRAQLEGWRARSAYKLLQIN--EKHQ----ILQSNRRIVDLGSSPGSWSQVAAR 87
             D + +    + +       L  +N  E H+           ++D+G+  G    + + 
Sbjct: 405 RKDAFDRLQNEQHY-------LADMNNAEDHKKIIADFAKGTVMIDVGAGGGIMLDLLSE 457

Query: 88  ITGSNANNTRVVAIDIL------DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLS 141
                      ++ +++       +      K  + D L L S+  +  A       +L 
Sbjct: 458 KHPDADITGIDISTNVIQELERKKVRERKSWKVKQADALKLSSYFELESADTIIFSSILH 517

Query: 142 DMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK---- 197
           +M      H +  +     + +AA   A  +L  GG  +++        D++ LL     
Sbjct: 518 EMYSYIPFHGRTYNP---DVVKAALKSAFAVLKPGGRMIIRDGIMTEPKDLIRLLAFRDP 574

Query: 198 ---KHFQK-VIHVK 207
              + F + V   K
Sbjct: 575 DGFRFFTRYVEDFK 588


>gi|281492250|ref|YP_003354230.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375921|gb|ADA65415.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Lactococcus
           lactis subsp. lactis KF147]
          Length = 252

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 32/147 (21%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPIL----------GVKFFK 116
              I+DL    G W+     ++ S   + +V+ +D  + M  I            ++F +
Sbjct: 54  GLSILDLCCGTGDWTF---DLSESVGPSGKVIGLDFSENMLEIAKAKLKEEAKKNIEFLQ 110

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            + + L            + D+V                                +L  G
Sbjct: 111 GNAMALP-------FENESFDVVTIGYGLRNTPDY-----------LTVLKEIFRVLKPG 152

Query: 177 GDFLVKTFQGGTTNDILCLLKKHFQKV 203
           G  +       T        + +F+ V
Sbjct: 153 GRVVCIETSHPTLPIYKQAFELYFKNV 179


>gi|164657530|ref|XP_001729891.1| hypothetical protein MGL_2877 [Malassezia globosa CBS 7966]
 gi|159103785|gb|EDP42677.1| hypothetical protein MGL_2877 [Malassezia globosa CBS 7966]
          Length = 345

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 23/122 (18%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAAR-----ITGSNANNTRVVAIDIL--DMEPILGVKFFKF 117
           L+   R++D+G   G  ++  AR     I G N N  +V   +      E    + F K 
Sbjct: 92  LRPGMRVLDVGCGVGGPAREIARFAGVQIVGVNNNAYQVDRANRYTAKAELQDQLSFVKG 151

Query: 118 DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
           DF+ L   +F   +      +  +  A    G                    L +L  GG
Sbjct: 152 DFMKLK-EQFGENSFDAVYAIEATCHAPSWEGVYGEI---------------LSVLKPGG 195

Query: 178 DF 179
            F
Sbjct: 196 VF 197


>gi|28192384|gb|AAL65281.1| QbsJ [Pseudomonas fluorescens]
          Length = 345

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 12/135 (8%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
           Q   R++DLG  PG  +Q  A+           +   + D  P   V             
Sbjct: 172 QHAERVLDLGGGPGLVAQALAQRYPG-------LHATVFDWPPTAAVA---GQLAAEAGL 221

Query: 126 EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185
           +     IGG+         Y  I    + H      C          L  GG F+    +
Sbjct: 222 QERVAIIGGDLAKDGFGEGYDVIWCSSVLHFVPD--CLGLLRRVHGALRPGGVFVCAHAE 279

Query: 186 GGTTNDILCLLKKHF 200
                 +   +  ++
Sbjct: 280 RSEQPAMNARVMPYY 294


>gi|222086227|ref|YP_002544759.1| methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723675|gb|ACM26831.1| methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 265

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 21/141 (14%)

Query: 65  LQSNRRIVDLGSSPG-SWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK----FDF 119
           L++  RI+D+G  PG  W+     +  S      +   D+        V+  +       
Sbjct: 45  LKAGDRILDVGCGPGWFWAATVDNLPESLD----LTLSDLSPGMVQEAVERCRPLAFGRV 100

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
            D  +         G+ D V+            + H+R  SL  A  +    +L  GG F
Sbjct: 101 TDQQADATALPFEDGSFDAVI--------AMHMLYHIRDQSLAIAEMY---RVLKPGG-F 148

Query: 180 LVKTFQGGTTNDILCLLKKHF 200
           L  T  G      +  L   F
Sbjct: 149 LAVTTNGAGNMRKMYELTTVF 169


>gi|27697405|ref|NP_775688.1| non-structural protein NS5; RNA-dependent RNA polymerase;
           methyltransferase component of capping enzyme [Apoi
           virus]
          Length = 897

 Score = 35.6 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL  ++E+  +      +VDLGS  G WS  AA        N   +A      +P
Sbjct: 57  SRGTSKLAWMHERGYVPLKG-VVVDLGSGRGGWSYYAAAQERVRKVNAYTLATTKGHEQP 115

Query: 109 ILG-------VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH--RKIDHLRTM 159
            L        V F K D   ++ +           D +L D+   +          L+ M
Sbjct: 116 RLVQSYGWNLVTFKKADVRTIEPY---------PVDTLLCDIGESSSSSSIEAKRTLQIM 166

Query: 160 SLCEAATFFALEMLNIGGDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVE 217
            +       +      G  F +K          + L   +  F   +   P  SR  + E
Sbjct: 167 DVVGKWLEIS-----PGASFCIKILCPYNPEVIEHLSRWQHQFGGGLVRVPH-SRNSTHE 220

Query: 218 MFLL 221
           M+ +
Sbjct: 221 MYFV 224


>gi|154277144|ref|XP_001539413.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
 gi|150412998|gb|EDN08381.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1]
          Length = 1980

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 17/129 (13%)

Query: 66   QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF---KFDFLDL 122
            Q N R++D+ ++PG  +   + +  +        A        I  +           +L
Sbjct: 1729 QPNERVLDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIISNL 1788

Query: 123  DSWEFIRQAIGGNPDLVLSDMA---------YPTIGHRKIDHL-----RTMSLCEAATFF 168
            D+ +   + +GG   ++L                   +              L  AA   
Sbjct: 1789 DARQAFPKILGGFDRVLLDAPCSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDS 1848

Query: 169  ALEMLNIGG 177
               +   GG
Sbjct: 1849 TNHLSKTGG 1857


>gi|86747746|ref|YP_484242.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Rhodopseudomonas palustris HaA2]
 gi|123004682|sp|Q2J2H9|UBIE_RHOP2 RecName: Full=Ubiquinone/menaquinone biosynthesis methyltransferase
           ubiE
 gi|86570774|gb|ABD05331.1| demethylmenaquinone methyltransferase [Rhodopseudomonas palustris
           HaA2]
          Length = 253

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 21/140 (15%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R++D+    G  S  AA+ +G+     +    DI              D L++     + 
Sbjct: 68  RLLDVAGGTGDISFRAAKASGAG---FQATVCDI------------NTDMLEVGRQRAVE 112

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTM------SLCEAATFFALEMLNIGGDFLVKT 183
           + + G  + V  +        +  D              + A   A  +L  G  FL   
Sbjct: 113 RHLDGQVEFVEGNAEALQFPDKSYDAYTIAFGIRNVPRIDLALKEAHRVLKPGSRFLCLE 172

Query: 184 FQGGTTNDILCLLKKHFQKV 203
           F       +  +      KV
Sbjct: 173 FSSVDVPGLAKIYDLFSFKV 192


>gi|300786051|ref|YP_003766342.1| methyltransferase type 12 [Amycolatopsis mediterranei U32]
 gi|299795565|gb|ADJ45940.1| methyltransferase type 12 [Amycolatopsis mediterranei U32]
          Length = 343

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 28/167 (16%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM------------------ 106
           L +  R++DLG   G+   VAAR   ++      +   +++                   
Sbjct: 164 LTAGARVLDLGCGTGNAIAVAARAFPASRFTGLDINAGVVEQAREHRLPNAGFAVGDAAE 223

Query: 107 ---EPILGVKFFKFDFLDLD----SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
              +P   V        D D        IR A+  +    + D  + +   R + +    
Sbjct: 224 LTADPPYDVITAFDAIHDQDRPDVVLRRIRHALAPDGLFFMVDTNFSSHLERNVGNPLAA 283

Query: 160 -SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
            +   +  +     L  GG  L   +     +++L      F+ V  
Sbjct: 284 LTYSISLMYCTTTSLAEGGAALGAVWGTEKASEMLADAG--FRHVEV 328


>gi|210632641|ref|ZP_03297483.1| hypothetical protein COLSTE_01386 [Collinsella stercoris DSM 13279]
 gi|210159418|gb|EEA90389.1| hypothetical protein COLSTE_01386 [Collinsella stercoris DSM 13279]
          Length = 330

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 21/152 (13%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGS---------NANNTRVVAIDILDMEPILGVKFFK 116
           ++   I+D+ ++PG  +   A +TG+         +A     +A ++  ++    V   +
Sbjct: 100 RAGADILDMCAAPGGKTAQIAALTGNAAHLTACEMSAPRAEKLAYNLDKLDA-ANVNVMR 158

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLC------EAATFFAL 170
            D   LD +    Q +   P        Y     R    +    L        A    AL
Sbjct: 159 TDARRLDEFFSFDQILLDAPCTG--TGTYRAGDERAEKRMTPQLLAKVTKSQRALLDRAL 216

Query: 171 EMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199
            +L  GG  +            + +   LK+H
Sbjct: 217 TVLKPGGTLVYSTCSVLAEENDDQVRAALKRH 248


>gi|218779928|ref|YP_002431246.1| cyclopropane-fatty-acyl-phospholipid synthase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761312|gb|ACL03778.1| Cyclopropane-fatty-acyl-phospholipid synthase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 343

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
           +++  K   +Q+ +RI+DLG   G  S   AR+     +   V              +  
Sbjct: 106 IELITKRADIQNGQRILDLGCGWGGLSLWIARMYPE-CDIIAVTPSCPQKEYIKARAQAL 164

Query: 116 KFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           K   L   + +    A  G  + ++S   +  + + +           A      + L  
Sbjct: 165 KLTNLHPVTVDMQNFAPRGTFERIISVELFNHMRNWR-----------AMLSRVSQWLGP 213

Query: 176 GGDFLVKTFQGGTT 189
            G   ++ F     
Sbjct: 214 DGRLFLQMFCHRNY 227


>gi|332298537|ref|YP_004440459.1| Fmu (Sun) domain protein [Treponema brennaborense DSM 12168]
 gi|332181640|gb|AEE17328.1| Fmu (Sun) domain protein [Treponema brennaborense DSM 12168]
          Length = 286

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 48/167 (28%), Gaps = 29/167 (17%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L    RI+D+ ++PG  + V + +    A            M             L    
Sbjct: 70  LGGAERILDMCAAPGGKTLVVSSLMDGTAELVSNERSHERMMRLSRVADEH----LPPSV 125

Query: 125 WEFIRQAIGGNPDLVLSD--------MAYPTIGHRKIDHLRTMSLCE------------- 163
              +R   G    L LS         +  P    R +       LCE             
Sbjct: 126 RARVRVTCGDGARLCLSRTECYDRILLDAPCSSERHVLSSPQ-YLCEWSPARVKTLSVTQ 184

Query: 164 -AATFFALEMLNIGGDFLVK--TFQGGTTNDILCLLKKHFQKVIHVK 207
            A    A  +L  GG  L           ++++  L+K F  V  V+
Sbjct: 185 WALLSSAFRLLRPGGYLLYATCALSPAENDEVVARLEKKFSGVQFVR 231


>gi|158312507|ref|YP_001505015.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158107912|gb|ABW10109.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 424

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 20/129 (15%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           +     ++DL    G+    AA    +      V A D+                ++L +
Sbjct: 190 ISPGENVIDLACGRGAVLFPAAE---ATGPAGSVRAFDLAPT------------MVELTA 234

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE-----AATFFALEMLNIGGDF 179
            +   + +      +   M  P         L  M L       AA      +L  GG  
Sbjct: 235 ADVAARQLPWVDVTIADAMDPPVEPGSVDVVLCGMGLFLLPDPVAALARWRGVLRPGGRL 294

Query: 180 LVKTFQGGT 188
            V  F    
Sbjct: 295 AVTVFGPAD 303


>gi|258515753|ref|YP_003191975.1| Methyltransferase type 11 [Desulfotomaculum acetoxidans DSM 771]
 gi|257779458|gb|ACV63352.1| Methyltransferase type 11 [Desulfotomaculum acetoxidans DSM 771]
          Length = 263

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-MEPILGVKFFKFDFLDLD 123
           L++   ++DLGS  G    +AAR  G + N   V+ +D+   M            F +++
Sbjct: 76  LKNGEVVLDLGSGAGFDVFLAARKVGPSGN---VIGVDMTPEMISKARHNAASMGFSNVE 132

Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
                   +G    L ++D +   I    + +L      +A    A  +L  GG  ++
Sbjct: 133 ------FRLGEIEHLPVADSSVDVIISNCVINLSPDK--QAVFNEAFRVLKPGGKIVI 182


>gi|148655374|ref|YP_001275579.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148567484|gb|ABQ89629.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 282

 Score = 35.3 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 26/125 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITG--------SNANNTRVVAIDILDMEPILGVKFFK 116
           L+    ++DLGS  G  + +AA+  G           +N   VA    +   +  V+F K
Sbjct: 75  LREGEIVLDLGSGGGLDALLAAQRVGVGGYVYGVDMTDNMLAVARRNAEKAGVANVEFLK 134

Query: 117 FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
            D  ++     I        D+++S+        +             A   A  +L  G
Sbjct: 135 GDIENIPLPANI-------IDVIISNCVINLTPDKS-----------QALHEAFRVLKPG 176

Query: 177 GDFLV 181
           G   V
Sbjct: 177 GRLAV 181


>gi|16081863|ref|NP_394263.1| ubiquinone/menaquinone methyltransferase related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640079|emb|CAC11931.1| ubiquinone/menaquinone methyltransferase related protein
           [Thermoplasma acidophilum]
          Length = 229

 Score = 35.3 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 29/145 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+   R +D G+  G  +++     G                    G      D  D   
Sbjct: 46  LREGMRCLDCGAGSGKVTELIYFRCG--------------------GCDVTALDITDSMF 85

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL--EMLNIGGDFLVK 182
              +++ +        S         R      T +L +   +FA    +L  GG F+  
Sbjct: 86  NPELKKYVKFVVSPAESLPFPDASFDRVSSAFLTRNLADIDRYFAEVYRVLRPGGVFVNM 145

Query: 183 TFQGGT-------TNDILCLLKKHF 200
                T        +         F
Sbjct: 146 DIYNPTRPVISEFFSLYFYRFVPFF 170


>gi|149243480|pdb|2PX2|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           (Monoclinic Form 1)
 gi|149243481|pdb|2PX2|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           (Monoclinic Form 1)
 gi|149243482|pdb|2PX4|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           (Monoclinic Form 2)
 gi|149243483|pdb|2PX5|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           (Orthorhombic Crystal Form)
 gi|149243484|pdb|2PX5|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           (Orthorhombic Crystal Form)
 gi|149243489|pdb|2PXA|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           And Gtpg
 gi|149243490|pdb|2PXA|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sah
           And Gtpg
 gi|149243491|pdb|2PXC|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
           Ns5 2'-O Methyltransferase Domain In Complex With Sam
           And Gtpa
          Length = 269

 Score = 35.3 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP 108
           +R   KL  + E+ + +Q   ++VDLG   G WS  AA +                    
Sbjct: 56  SRGTAKLRWLVER-RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG---PGHE 111

Query: 109 ILGVKFFKF-DFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATF 167
              +      + + + S   +        D +L D+   +    +I+  RT         
Sbjct: 112 EPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIG-ESSPSAEIEEQRT----LRILE 166

Query: 168 FALEMLNIG-GDFLVKTF--QGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
              + L+ G  +F +K          + L  L++ F   +   P+ SR  + EM+ +
Sbjct: 167 MVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRVPL-SRNSNHEMYWV 222


>gi|332534768|ref|ZP_08410595.1| methyltransferase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035792|gb|EGI72277.1| methyltransferase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 396

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 16/160 (10%)

Query: 53  YKLLQINEKHQI--LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPIL 110
           + L Q + +  +      + +++  S  G++S  A R    +  N  V    +   +   
Sbjct: 204 FYLDQRDSRAALERFSKGKTVLNCFSYTGTFSLYALRGGCEHVTNVDVSQPALDTAK--R 261

Query: 111 GVKFFKFD-----FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA 165
            V+    D     F+  D ++ +RQ            M  P     K          +  
Sbjct: 262 NVEHNNLDLNKVSFVKQDVFKLLRQYRDEGRQFDTIVMDPPKFADNKAQLTGACRGYKDI 321

Query: 166 TFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
              A+++L  GG  L  +  G    ++       FQKV+ 
Sbjct: 322 NMIAMQILKPGGTLLTFSCSGLMEQNL-------FQKVVA 354


>gi|229104015|ref|ZP_04234691.1| Modification methylase, HemK [Bacillus cereus Rock3-28]
 gi|228679359|gb|EEL33560.1| Modification methylase, HemK [Bacillus cereus Rock3-28]
          Length = 260

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 22/148 (14%)

Query: 64  ILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME---PILGVKFFKFDFL 120
           +L     IVDL       S        +      + ++DI  +        V  F     
Sbjct: 88  LLCFGDIIVDLCCG----SGAVGVALAAALGRVELYSVDIDPVAVRCASRNVTNFGGHVF 143

Query: 121 DLDSWEFIRQAIGGNPDL------VLSDMAYPTIGHRKIDHLRTMSL--CEAATFF---- 168
           + D ++ +  A+ G+ +        +   A   +      H   M+L   E         
Sbjct: 144 EGDLYKALPHALKGHVNTLVANVPYVPTEAIKLLPQEARLHEPKMALDGGEDGLDIQRRV 203

Query: 169 ---ALEMLNIGGDFLVKTFQGGTTNDIL 193
              A   L  GG  L++T +        
Sbjct: 204 AKEAFLWLAPGGHLLIETSEMQANQTFE 231


>gi|310796539|gb|EFQ32000.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 335

 Score = 35.3 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 25/116 (21%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP---ILGVKFFKFDFLDL 122
           +   R++D G+  G W+   A           +  +D+  ++P      V F+  D  D 
Sbjct: 77  KPLHRVLDAGTGTGIWAMDVAEEYPE----ALITGVDLSPIQPAFVPPNVTFYIDDVEDD 132

Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
            ++ +         D +   M   +I        ++            E L  GG 
Sbjct: 133 WTYSY-------KFDFIFGRMLTGSIADWPRFIHQSY-----------EFLEPGGW 170


>gi|194443138|ref|YP_002043740.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194401801|gb|ACF62023.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 541

 Score = 35.3 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARI----TGSNANNTRVVAIDILDMEPILGVKFFKFDFL 120
           L +  RI+DLG  PG ++++ A      TG + +   +           L + + + D  
Sbjct: 63  LPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQAANLNIDYIQQDIR 122

Query: 121 D---LDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG 177
                + ++FI    G       +D                            + L   G
Sbjct: 123 TYHPTEPFDFIMMTFGELNAFSAADAQSLISH-------------------CAQWLKPDG 163

Query: 178 DFLVKT 183
             LV+ 
Sbjct: 164 KLLVEV 169


>gi|304311980|ref|YP_003811578.1| Ubiquinone/menaquinone biosynthesis methyltransferase [gamma
           proteobacterium HdN1]
 gi|301797713|emb|CBL45935.1| Ubiquinone/menaquinone biosynthesis methyltransferase [gamma
           proteobacterium HdN1]
          Length = 268

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-VAIDILDMEPILGVKFFKFDFLD-LD 123
           +  +RI+DLG   G  +  AA+  GS      V ++ ++L +      +     F + +D
Sbjct: 73  RPGQRILDLGGGTGDLALRAAKRVGSEGKVVLVDLSREMLQIAQERASQKANGRFQEWVD 132

Query: 124 SWEFIR-QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
           + +FI+  A          D    +   R  +H +      A    A  +L  GG  LV 
Sbjct: 133 NIDFIQANAESLPFPDDHFDTCITSFALRVTEHPQ------AVLESAFRVLKPGGRLLVL 186

Query: 183 TFQGGTTNDILCLLKKH 199
            F       +    +++
Sbjct: 187 EFSQPEREWLGTFYRQY 203


>gi|254784712|ref|YP_003072140.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Teredinibacter
           turnerae T7901]
 gi|237684368|gb|ACR11632.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Teredinibacter
           turnerae T7901]
          Length = 570

 Score = 35.3 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 9/139 (6%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGS-NANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            + ++DLG   G   +   +          R+ A+DI +      +   +  F +L   E
Sbjct: 336 GQTLLDLGCGTGYCIERLLQQFPEITQPEGRIHALDIAEGM----LDRAQQKFDELGVAE 391

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186
            I   +G    L   D ++               L           L  GG F + T   
Sbjct: 392 QINWHLGDMESLPFVDESFDGCISSLTVQWSENPLQL--FSEMYRALKPGGWFALSTLGP 449

Query: 187 GTTNDIL--CLLKKHFQKV 203
            T  ++     +   F  V
Sbjct: 450 ETLFELRSAWRMVDEFAHV 468


>gi|293400620|ref|ZP_06644765.1| ribosomal RNA large subunit methyltransferase J
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305646|gb|EFE46890.1| ribosomal RNA large subunit methyltransferase J
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 261

 Score = 35.3 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 49  ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWS-----QVAARITGSNANNTRVVAIDI 103
           +R+ +KL  + +  Q+   +R  +D+G+S G +S     Q A ++   +    +++    
Sbjct: 61  SRAGFKLYDVIDDFQLQLKDRVCLDVGASTGGFSDVCLQQGAQKVYAVDVGKDQLIERLR 120

Query: 104 LDMEPIL----GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTI 148
            D   +       ++ + D  D             +  L+L  +     
Sbjct: 121 KDKRVVNMENCNCRYLRKDMFDDAITFACMDVSFISAKLILPAVFSVMS 169


>gi|261755404|ref|ZP_05999113.1| trans-aconitate 2-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261745157|gb|EEY33083.1| trans-aconitate 2-methyltransferase [Brucella suis bv. 3 str. 686]
          Length = 256

 Score = 35.3 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLL-QINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +DW  +          + E  R+R A  LL QI      L + R++VD+G  PG+ +++ 
Sbjct: 3   KDWSAKQYL-------KFEDERSRPARDLLAQI-----PLSAPRKVVDIGCGPGNSTKLL 50

Query: 86  ARITGSNANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
                    +    + D++D     +  V+FF  D    +                L D 
Sbjct: 51  VERWPDAQISGFDTSPDMIDTAKTHLPDVEFFISDATSFEPDAETDVLFSNAVFQWLPDH 110


>gi|254704710|ref|ZP_05166538.1| trans-aconitate 2-methyltransferase [Brucella suis bv. 3 str. 686]
          Length = 255

 Score = 35.3 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 27  RDWLNRHINDPYVQRAQLEGWRARSAYKLL-QINEKHQILQSNRRIVDLGSSPGSWSQVA 85
           +DW  +          + E  R+R A  LL QI      L + R++VD+G  PG+ +++ 
Sbjct: 2   KDWSAKQYL-------KFEDERSRPARDLLAQI-----PLSAPRKVVDIGCGPGNSTKLL 49

Query: 86  ARITGSNANNTRVVAIDILDM--EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDM 143
                    +    + D++D     +  V+FF  D    +                L D 
Sbjct: 50  VERWPDAQISGFDTSPDMIDTAKTHLPDVEFFISDATSFEPDAETDVLFSNAVFQWLPDH 109


>gi|294933465|ref|XP_002780729.1| 3-demethylubiquinone-9 3-methyltransferase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239890765|gb|EER12524.1| 3-demethylubiquinone-9 3-methyltransferase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 360

 Score = 35.3 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 35/163 (21%)

Query: 51  SAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI- 109
           +A K  ++ EK   L    RI+D+G   G  S++ A+  G       +    +     + 
Sbjct: 127 AAVK--EMTEKDSTL----RILDVGCGIGGSSRIMAKRYGEAVTGITLSDAQVERASELS 180

Query: 110 -----LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
                  V F K D           +    + DL+ S      +  +         +C  
Sbjct: 181 REAGLNNVTFKKMD-------ALRMEFPDASYDLIWSCECGEHVPDKAKY---IEEMC-- 228

Query: 165 ATFFALEMLNIGGDFLVKTFQGGT-----TNDILCLLKKHFQK 202
                  +L  GG  +V T+         T+    LL+  +++
Sbjct: 229 ------RVLKPGGRLIVATWCEKDDRKSLTDHQKWLLRFLYEE 265


>gi|327398359|ref|YP_004339228.1| type 11 methyltransferase [Hippea maritima DSM 10411]
 gi|327180988|gb|AEA33169.1| Methyltransferase type 11 [Hippea maritima DSM 10411]
          Length = 192

 Score = 35.3 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 166 TFFALEMLNIGGDFLV----KTFQGGTTNDILCLLKKHFQKVIHVKP 208
                 +L   G F+      TF   + +    +L K F+ V   KP
Sbjct: 131 LNLIHRILRPNGIFITYSYLHTFIFPSQSRFRSILHKQFRVVRTSKP 177


>gi|300857364|ref|YP_003782348.1| putative LysR family transcriptional regulator [Clostridium
           ljungdahlii DSM 13528]
 gi|300437479|gb|ADK17246.1| predicted transcriptional regulator, LysR family [Clostridium
           ljungdahlii DSM 13528]
          Length = 287

 Score = 35.3 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 8/161 (4%)

Query: 33  HINDPYVQRAQLEGWRARSAYKLLQINEKH--QILQSNRRIVDLGSSPGSWSQVAARITG 90
            + D      +   +RA+   KL++  EK    I +  +  + +G+ P S + +      
Sbjct: 56  QLTDV----GKRLQYRAQQMLKLMETTEKELKDINEGLQGTLSIGTVPSSGAALLPDRIQ 111

Query: 91  SNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEF-IRQAIGGNPDLVLSDMAYPTIG 149
                   +   I D +    +   K   +++          I  +  L    M   +  
Sbjct: 112 KFYKKYPGIDFQIWDGDTHRILDLLKSGIIEIGIIRTPFNGEIFESICLPKESMVAASSS 171

Query: 150 HRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTN 190
               +    M + E A   +L +     +F+VK  +     
Sbjct: 172 LNWNEKQNYMEMTELA-NKSLVIDRRFENFIVKACRKEGFE 211


>gi|325919740|ref|ZP_08181737.1| SAM-dependent methyltransferase [Xanthomonas gardneri ATCC 19865]
 gi|325549765|gb|EGD20622.1| SAM-dependent methyltransferase [Xanthomonas gardneri ATCC 19865]
          Length = 388

 Score = 35.3 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
            ++ ++DL  + G ++  AA    S      +    I   +    +   +  F+  D + 
Sbjct: 215 KDKTVLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIALAKGNAKLNNVRPKFVQADIFP 274

Query: 127 FIRQAI--GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
           ++R A   G   D+V+ D A  T    ++       L       AL ++  GG F   + 
Sbjct: 275 WLRDAANRGDQFDVVILDPAKMTRDREQVIPALKKYLDMN--KLALGVVKPGGLFATFSC 332

Query: 185 QG-GTTNDILCLLKK 198
            G     + L +L++
Sbjct: 333 TGLVAEQEFLDMLRR 347


>gi|297183230|gb|ADI19370.1| SAM-dependent methyltransferases [uncultured Chloroflexi bacterium
           HF0500_03M05]
          Length = 272

 Score = 35.3 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 56/188 (29%), Gaps = 47/188 (25%)

Query: 37  PYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNT 96
           P+      +  R      L+ + E    + S +RIVDL    G  +Q  A      A ++
Sbjct: 15  PFYS---QQNAR------LIDMAE----VDSGQRIVDLACGTGGVTQQIAERL-RGARDS 60

Query: 97  RVVAIDI------LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
            ++AID         ME +  V+     F+     E    A+    D V+   A   I  
Sbjct: 61  VIIAIDHSALALKQAMEDLKDVRNAAIQFVQSHV-EQASGAVKEKVDTVIFCNAIHYIPD 119

Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGG--DFLVKTFQGGTTND---ILCLLKKHFQKVIH 205
           +                     L  GG   F    F+G    +                 
Sbjct: 120 KDALLADIS-----------RTLKPGGKLAFNTTFFEGAHLPETFPFYRKWML------- 161

Query: 206 VKPVASRA 213
               ASR+
Sbjct: 162 ---KASRS 166


>gi|239579476|gb|ACR82295.1| polyprotein pp1ab [Gill-associated virus]
          Length = 943

 Score = 35.3 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 25/106 (23%), Gaps = 14/106 (13%)

Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAA---- 165
             +         +D    I +  G    + L D   P              L  A     
Sbjct: 785 PFIPHIPGKVTSVDLVNHINKK-GPAFAIDLHDELPP-----GKYDTIISDLYSATPEIT 838

Query: 166 ----TFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
                      L   G FL K       N I+  + +HF      K
Sbjct: 839 FPRFLDILAHNLKEHGHFLFKVTNKFRHNKIIEDIAQHFSYTHIFK 884


>gi|56692311|dbj|BAD80838.1| phosphoethanolamine N-methyltransferase [Atriplex nummularia]
          Length = 503

 Score = 35.3 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 31/135 (22%)

Query: 68  NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID-----ILDMEPILG----VKFFKFD 118
            + +++LG+  G ++   A   G       V+A+D     I   E I G    VKF   D
Sbjct: 57  GKSVLELGAGIGRFTGELAEKAGQ------VIALDFIESVIKKNECINGHYKNVKFMCAD 110

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
                            P L +S  +   I    +    +    E      L+ L  GG 
Sbjct: 111 VTS--------------PSLNISPNSVDIIFSNWLLMYLSDEEVERLVERMLKWLKPGGY 156

Query: 179 --FLVKTFQGGTTND 191
             F    F     + 
Sbjct: 157 IFFRESCFHQSGDHK 171


>gi|116753601|ref|YP_842719.1| NOL1/NOP2/sun family RNA methylase [Methanosaeta thermophila PT]
 gi|116665052|gb|ABK14079.1| ribosomal RNA methyltransferase NOP2 [Methanosaeta thermophila PT]
          Length = 302

 Score = 35.3 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 23/146 (15%)

Query: 55  LLQINEKHQIL-------QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME 107
           L+ + E+  +L       Q   RI+DL ++PG     AA+I+   +N   VVA D     
Sbjct: 81  LIHVQEELSMLPPVVLDPQPGERILDLCAAPGG---KAAQISMQMSNKGLVVANDSSSAR 137

Query: 108 PIL-----------GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR--KID 154
            +             V    +D      + F R  +        +   YP +  R     
Sbjct: 138 IVPLRANLERLGAVNVVVTSYDGRRFPQYNFDRALVDAPCSSEGTARRYPEVIARCSAKR 197

Query: 155 HLRTMSLCEAATFFALEMLNIGGDFL 180
                +L  +    A+++   GG  +
Sbjct: 198 SADLQNLQVSLLRRAIQLTKPGGVVV 223


>gi|76788082|ref|YP_329155.1| hypothetical protein SAK_0522 [Streptococcus agalactiae A909]
 gi|77406925|ref|ZP_00783947.1| methyltransferase [Streptococcus agalactiae H36B]
 gi|9965182|gb|AAG09975.1|AF248038_4 methyltransferase [Streptococcus agalactiae]
 gi|76563139|gb|ABA45723.1| conserved hypothetical protein [Streptococcus agalactiae A909]
 gi|77174471|gb|EAO77318.1| methyltransferase [Streptococcus agalactiae H36B]
          Length = 254

 Score = 35.3 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
             ++ R++++       +Q  + I  + A +  + A+D LD + I      K +      
Sbjct: 39  FSADSRVLEVAC-----NQCTSSIDIAKAFSCHITALD-LDSKVIEKA---KENVKKAQL 89

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK-- 182
            EFI    G    L   D ++  + +  +  + + S  E A    L +L  GG  L    
Sbjct: 90  EEFIEVIQGNALKLPFPDNSFDIVINEAMLTMLSNSAKEKAIKEYLRVLKPGGRLLTHDV 149

Query: 183 TFQGGTTNDILCLLKK 198
           ++Q   T  ++  L+ 
Sbjct: 150 SYQDEDTAKLIDQLRH 165


>gi|186910078|gb|ACC94324.1| 1ab polyprotein [Infectious bronchitis virus]
          Length = 6620

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 22/158 (13%)

Query: 73   DLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAI 132
            D G +PGS      +        T +V  DI+D      V             +  +   
Sbjct: 6391 DKGVAPGS---TVLKQWLPEG--TLLVDNDIVDYVSDAHVSVLS---------DCNKYNT 6436

Query: 133  GGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT----FFALEMLNIGGDFLVKTFQGG- 187
                DLV+SDM       RK + + + +  +        F    L IGG F +K  +   
Sbjct: 6437 EHKFDLVISDMYTDNDSKRKHEGIVSNNGNDDVFIYLANFLKNNLAIGGSFAIKVTETSW 6496

Query: 188  TTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
              +         +  +      A  A S E FL+   +
Sbjct: 6497 HESLYEIAQDCAWWTLFCT---AVNASSSEAFLVGINY 6531


>gi|254412912|ref|ZP_05026684.1| Methyltransferase small domain superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180076|gb|EDX75068.1| Methyltransferase small domain superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 215

 Score = 34.9 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 20/137 (14%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R++DLG   GS + + A+            +   L        +F +    DL   +   
Sbjct: 44  RVLDLGCGNGSLTHLIAQQGYEVVGVEESESGMTLARSSFPDCQFIQGSIYDLPYAQLGN 103

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
                    V+  + YP              L  A    A + L   G  ++ T   G  
Sbjct: 104 SFDSVISCEVIEHLFYPR------------ELVRA----AKKYLKPNGVLIITTPYHGYF 147

Query: 190 NDIL----CLLKKHFQK 202
            +++      + +HF  
Sbjct: 148 KNLVLALSGKMDRHFTT 164


>gi|84872467|gb|ABC67278.1| putative dehydrogenase [Streptomyces hygroscopicus subsp. limoneus]
          Length = 250

 Score = 34.9 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
             +  +  GSS G  + +AAR+       T +      +     GV   + D    ++ +
Sbjct: 1   MAQHALVTGSSHGLGAHLAARLAADGWKVTGLGRRPASETPATPGVDHLQADLSRPETLK 60

Query: 127 FIRQAIGGNPDLVLSDM-AYPTIGHRKIDHLRTMSLCEAATFFALEMLNI 175
           +I   +G  PDL++ +  +YP     ++      SL E    F +  L  
Sbjct: 61  WITDRLGEAPDLIIHNAVSYPPRPAHEL------SLAELEDVFRVNTLAP 104


>gi|189092758|gb|ACD75819.1| polyprotein [Zika virus]
          Length = 3423

 Score = 34.9 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 40   QRAQLEG------WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNA 93
            +RA  +G        +R + KL  + E+   LQ   +++DLG   G WS  AA I     
Sbjct: 2561 RRALKDGVATGGHAVSRGSAKLRWLVER-GYLQPYGKVIDLGCGRGGWSYYAATIRKVQE 2619

Query: 94   NNTRVVAID--ILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
                          M     V+ + ++ + L S   +        D +L D+   +    
Sbjct: 2620 VKGYTKGGPGHEEPML----VQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPE 2675

Query: 152  KIDHLRTMSLCEAATFFALEMLNIG-GDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKP 208
              +                + L    G F +K       T  + L  L++ +   +   P
Sbjct: 2676 VEEAR-----TLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGGLVRVP 2730

Query: 209  VASRAESVEMFLL 221
            + SR  + EM+ +
Sbjct: 2731 L-SRNSTHEMYWV 2742


>gi|91974693|ref|YP_567352.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Rhodopseudomonas palustris BisB5]
 gi|123166746|sp|Q13EN8|UBIE_RHOPS RecName: Full=Ubiquinone/menaquinone biosynthesis methyltransferase
           ubiE
 gi|91681149|gb|ABE37451.1| demethylmenaquinone methyltransferase [Rhodopseudomonas palustris
           BisB5]
          Length = 253

 Score = 34.9 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 21/140 (15%)

Query: 70  RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
           R++D+    G  S  AA+ +G+     +    DI              D L++     ++
Sbjct: 68  RLLDVAGGTGDISFRAAKASGAG---FQATVCDI------------NTDMLEVGRQRAVQ 112

Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTM------SLCEAATFFALEMLNIGGDFLVKT 183
           + + G  D V  +        R  D              + A   A  +L  G  FL   
Sbjct: 113 RHLDGQVDFVEGNAEALQFPDRSYDAYTIAFGIRNVPRIDLALKEAYRVLKPGSRFLCLE 172

Query: 184 FQGGTTNDILCLLKKHFQKV 203
           F       +  +      KV
Sbjct: 173 FSSVDVPGLNKIYDLFSFKV 192


>gi|312142592|ref|YP_003994038.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
 gi|311903243|gb|ADQ13684.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
          Length = 342

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 27/157 (17%)

Query: 56  LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF 115
           L+++ K   +++ + I+DLG   GS S   A     N  +  V A+              
Sbjct: 106 LELSTKRAEIENGQEIMDLGCGWGSLSFYIAE----NYPDCSVTAVSNSQ---------L 152

Query: 116 KFDFLDLDSWEF----IRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
           + D++   +       +R       +          +     +H+R   L         +
Sbjct: 153 QIDYIQKKARARKLKNLRALKADINNFQPEREYDRVLSIEMFEHMRNYQLL---FDKVSD 209

Query: 172 MLNIGGDFLVKTFQGGTTNDIL-------CLLKKHFQ 201
            L   G   V  F   T   +         + +  F 
Sbjct: 210 FLKTDGKLFVHIFSHHTYPYLYEDRGSMSWMARHFFS 246


>gi|295111256|emb|CBL28006.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Synergistetes bacterium SGP1]
          Length = 217

 Score = 34.9 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L    R +DLG  PG  S   A  + ++A+   +V  DI D + +   +     F     
Sbjct: 47  LGEGGRALDLGCGPGGLSYALAETSPASAS---IVGADISD-DQLECARRGAGAF--ACK 100

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFL 180
            EF++ ++   P     D  +  +      H    ++  AA      +L  GG FL
Sbjct: 101 VEFLKASMDELP---FPDGHFDLVMTSMALHETPPAVRRAAIAETARLLRPGGTFL 153


>gi|189499106|ref|YP_001958576.1| Methyltransferase type 11 [Chlorobium phaeobacteroides BS1]
 gi|189494547|gb|ACE03095.1| Methyltransferase type 11 [Chlorobium phaeobacteroides BS1]
          Length = 258

 Score = 34.9 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 65  LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
           L+ N R++DLG   G+ +   A +           +  ++D+          F  +D+D 
Sbjct: 30  LKGNERVLDLGCGDGALAAWIAEMLPDGNVVGIDASQGMIDVALQKTKDNLCFVLMDIDD 89

Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
            +FI +      D+V S        H   DH + +     A      +
Sbjct: 90  LDFIEEF-----DVVFS----NATLHWVKDHRKLLHNVSRALRSCGRV 128


>gi|295696042|ref|YP_003589280.1| sun protein [Bacillus tusciae DSM 2912]
 gi|295411644|gb|ADG06136.1| sun protein [Bacillus tusciae DSM 2912]
          Length = 486

 Score = 34.9 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 14/83 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME-----------PILGVKF 114
           +    ++DL ++PG  S   A          RV A+DI   +            +  V  
Sbjct: 279 EPGWEVLDLCAAPGGKSAHLAEWMK---GTGRVTAVDIHPHKIPLIERTARRLGLPNVHP 335

Query: 115 FKFDFLDLDSWEFIRQAIGGNPD 137
              D  D  S      A+   P 
Sbjct: 336 VCADGRDAPSLGIFDAALVDAPC 358


>gi|255514304|gb|EET90563.1| Methyltransferase type 11 [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 277

 Score = 34.9 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 67  SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWE 126
             +R++D+G  PG ++ +  R          V  +DI   E  L  + +K     + S E
Sbjct: 57  RGKRVLDIGCGPGIYANLLHRKGAE------VHGVDISKKEIELDRQHYKGIDFRVASAE 110

Query: 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
            +     G  DLVL  +A+                   A   A  +L  GG  ++
Sbjct: 111 KLPYR-KGYFDLVLVALAFSHFNDMDK-----------ALDEACRVLKTGGRLVI 153


>gi|283470682|emb|CAQ49893.1| menaquinone biosynthesis methyltransferase UbiE [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 241

 Score = 34.9 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 24/144 (16%)

Query: 66  QSNRRIVDLGSSPGSWSQVAARITGSNANNTRV------VAIDILDMEPILGVKFFKFDF 119
           +   + +D+    G W+   ++        T +      + +       +  VK    D 
Sbjct: 48  RKGTKALDVCCGTGDWTIALSKAVEPTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDA 107

Query: 120 LDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF 179
           ++L            + D V        +                A      +L  GG  
Sbjct: 108 MELP-------FEDNSFDYVTIGFGLRNVPDY-----------LVALKEMNRVLKPGGMV 149

Query: 180 LVKTFQGGTTNDILCLLKKHFQKV 203
           +       T      +   +F+ V
Sbjct: 150 VCLETSQPTLPVFKQMYALYFKFV 173


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.150    0.455 

Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,551,523,952
Number of Sequences: 14124377
Number of extensions: 192768881
Number of successful extensions: 473031
Number of sequences better than 10.0: 3494
Number of HSP's better than 10.0 without gapping: 3656
Number of HSP's successfully gapped in prelim test: 1637
Number of HSP's that attempted gapping in prelim test: 462722
Number of HSP's gapped (non-prelim): 5849
length of query: 227
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 93
effective length of database: 2,950,127,112
effective search space: 274361821416
effective search space used: 274361821416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 79 (34.9 bits)