RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780313|ref|YP_003064726.1| ribosomal RNA
methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str.
psy62]
(227 letters)
>gnl|CDD|161879 TIGR00438, rrmJ, cell division protein FtsJ.
Length = 188
Score = 175 bits (445), Expect = 9e-45
Identities = 79/191 (41%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Query: 36 DPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANN 95
D Y Q+A+ E +R+R+++KLLQ+N+K ++++ ++DLG++PG WSQVA G
Sbjct: 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKG-- 58
Query: 96 TRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKID 154
RV+A+D+ M+PI V F + DF D + IR+ +G + D+V+SD A G+ ID
Sbjct: 59 -RVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDID 117
Query: 155 HLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAE 214
HLR++ L E A A E+L G+F+VK FQG ++ L L+K F+KV KP ASR
Sbjct: 118 HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKR 177
Query: 215 SVEMFLLAKGF 225
S E++++AK F
Sbjct: 178 SAEVYIVAKRF 188
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 162 bits (413), Expect = 5e-41
Identities = 81/210 (38%), Positives = 120/210 (57%), Gaps = 6/210 (2%)
Query: 18 KNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSS 77
K RS SS WL H +D YVQ+AQ +G R+R+ +KL +I + ++ + +VDLG++
Sbjct: 4 KKRS--ASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAA 61
Query: 78 PGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP- 136
PG WSQ A G RV+A DIL M+PI+GV F + DF D + + + +G +
Sbjct: 62 PGGWSQYAVTQIGDKG---RVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV 118
Query: 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196
+V+SDMA G +D R M L E A ++L GG F+VK FQG ++ L +
Sbjct: 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREI 178
Query: 197 KKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
+ F KV KP +SRA S E++++A G +
Sbjct: 179 RSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gnl|CDD|129570 TIGR00478, tly, hemolysin TlyA family protein. Hemolysins are
exotoxins that attack blood cell membranes and cause
cell rupture, often by forming a pore in the membrane.
At least two members of this protein family have been
characterized indirectly as pore-forming hemolysins, one
from the spirochete Serpula (Treponema) hyodysenteriae
and one from Mycobacterium tuberculosis. However,
homology domains in this protein suggest
methyltransferase activity (pfam01728) and RNA-binding
activity (pfam01479).
Length = 228
Score = 34.0 bits (78), Expect = 0.034
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
R KL + E+ I N+ ++D+GSS G ++ A V +D+
Sbjct: 58 RGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCA-----LQKGAKEVYGVDV 106
>gnl|CDD|183301 PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose
methyltransferase; Provisional.
Length = 357
Score = 32.1 bits (74), Expect = 0.11
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 50 RSAYKL-------LQINEKHQILQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAI 101
RS KL + +E + L R VDLG++PG W+ Q+ R V A+
Sbjct: 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-------GMFVTAV 239
Query: 102 D 102
D
Sbjct: 240 D 240
>gnl|CDD|164958 PHA02563, PHA02563, DNA polymerase; Provisional.
Length = 630
Score = 28.6 bits (64), Expect = 1.3
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKI 153
K+ F LDL +FIR+ G I +
Sbjct: 219 KYTHFPILDLGFDDFIRKFYRGGRTWYNPKYIGKLIEEGYV 259
>gnl|CDD|179319 PRK01683, PRK01683, trans-aconitate 2-methyltransferase;
Provisional.
Length = 258
Score = 28.4 bits (64), Expect = 1.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 40 QRAQLEGWRARSAYKLLQINEKHQI-LQSNRRIVDLGSSPGSWSQV------AARITG 90
+ E R R A LL ++ L++ R +VDLG PG+ +++ AARITG
Sbjct: 8 LYLKFEDERTRPARDLLA-----RVPLENPRYVVDLGCGPGNSTELLVERWPAARITG 60
>gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase;
Provisional.
Length = 255
Score = 28.1 bits (63), Expect = 1.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
R R Y LL + RR+VDLG PG+ ++ AR
Sbjct: 14 RGRPFYDLL----ARVGAERARRVVDLGCGPGNLTRYLAR 49
>gnl|CDD|183162 PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase;
Provisional.
Length = 281
Score = 27.7 bits (62), Expect = 2.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 26 SRDWLNRHINDPYVQ 40
+ DWL HI+DP +Q
Sbjct: 8 AADWLAEHIDDPEIQ 22
>gnl|CDD|119086 pfam10566, Glyco_hydro_97, Glycoside hydrolase 97. This is the
97th family of glycosidases, in this case bacterial. The
central part of the GH97 family protein sequences
represents a typical and complete (beta/alpha)8-barrel
or catalytic TIM-barrel type domain. The N- and
C-terminal parts of the sequences, mainly consisting of
beta-strands, most probably form two additional
non-catalytic domains with as yet unknown functions. The
non-catalytic domains of glycosidases from the
alpha-galactosidase and alpha-glucosidase superfamilies
are also predominantly composed of beta-strands, and at
least some of these domains are involved in
oligomerisation and carbohydrate binding. In all known
glycosidases with the (beta-alpha)8-barrel fold, the
amino acid residues at the active site are located on
the C-termini of the beta-strands.
Length = 643
Score = 27.9 bits (62), Expect = 2.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 111 GVKFFKFDFLDLDSWEFIR 129
GV FK DFLD D E +R
Sbjct: 391 GVVGFKVDFLDRDDQEMVR 409
>gnl|CDD|115136 pfam06460, NSP13, Coronavirus NSP13. This family covers the NSP13
region of the coronavirus polyprotein. This protein has
the predicted function of an mRNA cap-1
methyltransferase function.
Length = 300
Score = 27.5 bits (61), Expect = 2.6
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
DL++SDM ++ F E L +GG +K
Sbjct: 123 FDLIISDMYDGRTKSIDGENNSKEGFFTYICGFIREKLALGGSIAIKI 170
>gnl|CDD|165411 PHA03139, PHA03139, helicase-primase primase subunit; Provisional.
Length = 860
Score = 26.9 bits (59), Expect = 4.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 137 DLVLS---DMAYPTIGHRKIDHL--RTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTND 191
D +LS + +P I + I H R TF ++ N+ +K Q G +D
Sbjct: 746 DSLLSFIRLIGWPIIKTQLITHYETRIAQQFSQVTFLKIDSKNLQ----IKKTQFGRVSD 801
Query: 192 ILCLLKKH 199
CL ++H
Sbjct: 802 FSCLNRQH 809
>gnl|CDD|182921 PRK11039, PRK11039, putative dehydrogenase; Provisional.
Length = 140
Score = 26.2 bits (58), Expect = 7.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 43 QLEGWRARSAY---KLLQINEKHQILQ 66
Q+ ++AR Y KL Q +EKHQI Q
Sbjct: 94 QIFRFKARYDYPNKKLHQRDEKHQINQ 120
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,731,252
Number of extensions: 231142
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 19
Length of query: 227
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,049,753
Effective search space: 554816161
Effective search space used: 554816161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)