RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780313|ref|YP_003064726.1| ribosomal RNA
methyltransferase RrmJ/FtsJ [Candidatus Liberibacter asiaticus str.
psy62]
(227 letters)
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 206 bits (524), Expect = 5e-54
Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 4/182 (2%)
Query: 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
G R+R+ +KL +I + ++ + +VDLG++PG WSQ G R++A D+L
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLP 57
Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCEA 164
M+PI+GV F + DF D + + + +G + +V+SDMA G +D R M L E
Sbjct: 58 MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVEL 117
Query: 165 ATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKG 224
A ++L GG F+VK FQG ++ L ++ F KV KP +SRA S E++++A G
Sbjct: 118 ALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177
Query: 225 FR 226
+
Sbjct: 178 RK 179
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase,
viral enzyme structure; HET: SFG; 1.90A {Wesselsbron
virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 161 bits (408), Expect = 1e-40
Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 24/235 (10%)
Query: 6 GSSSRRGLTQKVKNRSCQGSSRDWLNRH-------INDPYVQRAQLEG------WRARSA 52
G ++ L + K R + R+ ++ +R EG +R A
Sbjct: 9 GKAAGVTLGEVWK-RQLNMLGKQEFERYKVSDITEVDRTAARRYLKEGRTDVGISVSRGA 67
Query: 53 YKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGV 112
K+ ++E+ L+ R++DLG G WS AA + + I+ +PI
Sbjct: 68 AKIRWLHERGY-LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH-EKPIHMQ 125
Query: 113 KFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEM 172
++ + + D +L D+ + ++ RTM + E +
Sbjct: 126 -TLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESSSNP-LVERDRTMKVLENFERW---K 180
Query: 173 LNIGGDFLVKTFQGGT--TNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
+F VK + L L+ F I P SR + EM+ ++
Sbjct: 181 HVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYISGAR 234
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 160 bits (405), Expect = 3e-40
Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 10/185 (5%)
Query: 46 GWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD 105
R+R+A+KL + +++++++ ++++GSSPG W+QV N+ ++++ID+ +
Sbjct: 4 QLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVL------NSLARKIISIDLQE 57
Query: 106 MEPILGVKFFKFDFLDLDSWEFIRQAI----GGNPDLVLSDMAYPTIGHRKIDHLRTMSL 161
ME I GV+F + D ++ I +A+ D V+SD G DH + +
Sbjct: 58 MEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQI 117
Query: 162 CEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLL 221
+ A+ L GG+ L+K FQG TND + + +K+F KP ASR S E++++
Sbjct: 118 GQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIM 177
Query: 222 AKGFR 226
GF+
Sbjct: 178 FFGFK 182
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum 3D7}
Length = 201
Score = 158 bits (399), Expect = 1e-39
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 20/198 (10%)
Query: 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
+R+R+AYKL++++ K+ L+ N+ I+D+G PGSW QV T + N + ID M
Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKI--IGIDKKIM 59
Query: 107 EPILGVKFFKFDFLDLDSWE-----------------FIRQAIGGNP-DLVLSDMAYPTI 148
+PI V F + + + +++ + D++LSD A P I
Sbjct: 60 DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI 119
Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKP 208
G++ DHL + L + T F + +NIGG ++VK + G TN++ LK FQ V KP
Sbjct: 120 GNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKP 179
Query: 209 VASRAESVEMFLLAKGFR 226
ASR ES E++L+ K F
Sbjct: 180 KASRNESREIYLVCKNFL 197
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 153 bits (387), Expect = 3e-38
Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 7/187 (3%)
Query: 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRV-----VAI 101
+R+RSA+KLL++NE+HQIL+ R++D G++PG+WSQVA + + + + +
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61
Query: 102 DILDMEPILGVKFFKFDFLDLDSW--EFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
D+L + P+ G F + + G D++LSDMA G R +DH R +
Sbjct: 62 DLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLI 121
Query: 160 SLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMF 219
SLC ++L GG FL KT+ G + + L + FQ V +KP ASR ES E++
Sbjct: 122 SLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVY 181
Query: 220 LLAKGFR 226
LA +
Sbjct: 182 FLATQYH 188
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, ATP-binding, capsid protein, cleavage on PAIR
of basic residues; HET: GTA SAH; 1.45A {Yellow fever
virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Length = 277
Score = 148 bits (374), Expect = 1e-36
Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)
Query: 6 GSSSRRGLTQKVKNRSCQGSSRD----------WLNRHINDPYVQRAQLEG--WRARSAY 53
GS++ + L + K R ++R ++ +++ +R
Sbjct: 2 GSANGKTLGEVWKRELNLLDKRQFELYKRTDIVEVDRDTARRHLAEGKVDTGVAVSRGTA 61
Query: 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
KL +E+ + + R++DLG G W AA + + D +P+
Sbjct: 62 KLRWFHERGYV-KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-EKPMNVQ- 118
Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
++ + I + D +L D+ G + + L
Sbjct: 119 SLGWNIITFKDKTDIHRLEPVKCDTLLCDI-----GEXXXXXVTEGERTVRVLDTVEKWL 173
Query: 174 NIG-GDFLVKTFQG--GTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGF 225
G +F VK + L LL++ F + P SR + EM+ ++
Sbjct: 174 ACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGAR 227
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A* 3evg_A*
Length = 305
Score = 134 bits (339), Expect = 2e-32
Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 22/227 (9%)
Query: 6 GSSSRRGLTQKVKNRSCQGSSRDW----------LNRHINDPYVQRAQLEGW-RARSAYK 54
GS+ L +K K+R ++ ++R + ++R + + +R + K
Sbjct: 11 GSNIGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAK 70
Query: 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKF 114
L E++ ++ ++VDLG G WS + EPI +
Sbjct: 71 LRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPIP-MST 127
Query: 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN 174
+ ++ + L S + D +L D+ + + ++ RT+ + L+
Sbjct: 128 YGWNLVRLQSGVDVFFIPPERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVE----NWLS 182
Query: 175 IGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMF 219
F VK ++ I + L++ V+ SR + EM+
Sbjct: 183 NNTQFCVKVLNPYMSSVIEKMEALQRKHGGA-LVRNPLSRNSTHEMY 228
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral
enzyme structure, ATP-binding, nucleotide-binding; HET:
SAM; 1.70A {Yokose virus}
Length = 282
Score = 124 bits (313), Expect = 2e-29
Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 26/231 (11%)
Query: 6 GSSSRRGLTQKVKNR----------SCQGSSRDWLNRHINDPYVQRAQLEGW-RARSAYK 54
G+ S + K + + S ++R ++ G +R + K
Sbjct: 19 GTGSGMTPGEAWKKQLNKLGKTQFEQYKRSCILEVDRTHARDSLENGIQNGIAVSRGSAK 78
Query: 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---LDMEPILG 111
L + E+ + + +VDLG G WS AA + +V+A + +PI+
Sbjct: 79 LRWMEERGYV-KPTGIVVDLGCGRGGWSYYAASLKNV----KKVMAFTLGVQGHEKPIMR 133
Query: 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE 171
+ D +L D+ + ++ RT+ + A + E
Sbjct: 134 TTLGWNLI-RFKDKTDVFNMEVIPGDTLLCDIG-ESSPSIAVEEQRTLRVLNCAKQWLQE 191
Query: 172 MLNIGGDFLVKTFQGGTTNDI--LCLLKKHFQKVIHVKPVASRAESVEMFL 220
+F +K T + L L+ + V+ SR + EM+
Sbjct: 192 --GNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGL-VRVPLSRNSTHEMYW 239
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA
capping, S-adenosyl-L-methionine, viral protein; HET:
SAM; 2.90A {Meaban virus}
Length = 265
Score = 119 bits (300), Expect = 4e-28
Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 21/229 (9%)
Query: 6 GSSSRRGLTQKVKNRSCQGSSRD----------WLNRHINDPYVQRAQLEGWRA--RSAY 53
S+ L K++ + + +R Y++R + + R
Sbjct: 2 PGSTGASLGMMWKDKLNAMTKEEFTRYKRAGVMETDRKEARDYLKRGDGKTGLSVSRGTA 61
Query: 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVK 113
KL + E+ ++ R+VDLG G WS AA + + P +
Sbjct: 62 KLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVG-GHEVPRITES 119
Query: 114 FFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEML 173
+ ++ + S I D+++ D+ + ++ RT+ + E + +
Sbjct: 120 -YGWNIVKFKSRVDIHTLPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWK--VK 175
Query: 174 NIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFL 220
N DF+VK + + L ++++ + V+ SR + EM+
Sbjct: 176 NPSADFVVKVLCPYSVEVMERLSVMQRKWGGG-LVRNPYSRNSTHEMYF 223
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 105 bits (263), Expect = 1e-23
Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 30/235 (12%)
Query: 6 GSSSRRGLTQKVKNRSCQGSSRD----------WLNRHINDPYVQRAQLEG--WRARSAY 53
G + R L ++ K + + ++R + G +R
Sbjct: 1 GRAGGRTLGEQWKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTA 60
Query: 54 KLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI---LDMEPIL 110
KL + E+ + Q ++VDLG G WS AA + V EP+L
Sbjct: 61 KLRWLVERRFV-QPIGKVVDLGCGRGGWSYYAATMKNV----QEVRGYTKGGPGHEEPML 115
Query: 111 GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFAL 170
+ + S + D +L D+ + +I+ RT+ + E
Sbjct: 116 MQSYGWNIV-TMKSGVDVFYKPSEISDTLLCDIG-ESSPSAEIEEQRTLRILE----MVS 169
Query: 171 EMLNIG-GDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLA 222
+ L+ G +F +K + L L++ F + V+ SR + EM+ ++
Sbjct: 170 DWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL-VRVPLSRNSNHEMYWVS 223
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor,
P nucleotide-binding, RNA replication, viral protein;
HET: SFG; 2.00A {West nile virus}
Length = 321
Score = 94.5 bits (234), Expect = 2e-20
Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 10/176 (5%)
Query: 50 RSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
R KL + E+ + + +++DLG G W A E
Sbjct: 78 RGTAKLRWLVERRFL-EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH--EEP 134
Query: 110 LGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFA 169
V+ + ++ + + S + D +L D+ + +++ RT+ + E
Sbjct: 135 QLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMV---E 190
Query: 170 LEMLNIGGDFLVKTFQGGTTN--DILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
+ +F VK + + LL++ + + V+ SR + EM+ +++
Sbjct: 191 DWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGL-VRNPLSRNSTHEMYWVSR 245
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 62.3 bits (151), Expect = 8e-11
Identities = 28/197 (14%), Positives = 67/197 (34%), Gaps = 21/197 (10%)
Query: 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVA 100
+ + + +R KL + ++ + + + +D+GSS G ++ V + + A +
Sbjct: 11 KGEKLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQ---NGAKLVYALD 67
Query: 101 IDILDMEPILG-----VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY-------PTI 148
+ + + V +F+F + +F + G P D+++ P +
Sbjct: 68 VGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ----GRPSFTSIDVSFISLDLILPPL 123
Query: 149 GHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK- 207
+ +L + E + G T +L + V +
Sbjct: 124 YEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF 183
Query: 208 -PVASRAESVEMFLLAK 223
P+ A +VE +
Sbjct: 184 SPIKGGAGNVEFLVHLL 200
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
structure initiative; HET: MSE; 1.53A {Streptococcus
thermophilus lmg 18311}
Length = 291
Score = 42.2 bits (99), Expect = 1e-04
Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 32/120 (26%)
Query: 41 RAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV-----AARITGSN--- 92
+ + + +R KL + + + +D+G+S G ++ V A + +
Sbjct: 59 KGEKLRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGT 118
Query: 93 -------ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAY 145
+ RV +++ +++F + +F G P D+++
Sbjct: 119 NQLVWKLRQDDRVRSME-------------QYNFRYAEPVDFTE----GLPSFASIDVSF 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 3e-04
Identities = 31/159 (19%), Positives = 43/159 (27%), Gaps = 74/159 (46%)
Query: 74 LGSSPGSWSQVAARITGSNANNTR-----VVAIDILDMEPILGVKFFKFDFLDLDSWE-F 127
LG +PG ++ + + G+ T V A+ I DSWE F
Sbjct: 256 LGFTPG---ELRSYLKGA----TGHSQGLVTAV------AIAET----------DSWESF 292
Query: 128 IRQA---------IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALE------- 171
IG V AYP SL + +LE
Sbjct: 293 FVSVRKAITVLFFIG-----VRCYEAYP-----------NTSLPPSILEDSLENNEGVPS 336
Query: 172 -MLNIGG---DFLVKTFQGGTTNDILCLLKKHFQKVIHV 206
ML+I + + TN H V
Sbjct: 337 PMLSISNLTQEQVQDYVN--KTN-------SHLPAGKQV 366
Score = 25.7 bits (56), Expect = 9.6
Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 25/59 (42%)
Query: 21 SCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRI-VDLGSSP 78
S +++ + ++N + N H L + +++ + L +
Sbjct: 340 SISNLTQEQVQDYVN---------------------KTN-SH--LPAGKQVEISLVNGA 374
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 38.0 bits (88), Expect = 0.002
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 25/177 (14%)
Query: 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLD------ 121
+I+DL S G + + ++V ++I + + + ++ L+
Sbjct: 50 KGKIIDLCSGNGIIPLLLST-----RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII 104
Query: 122 -LDSWEFIRQAIGGNPDLVLSDMAY---PTIGHRKIDHLRTMSLCEAATFF------ALE 171
D + D+V + Y P + + ++ E A
Sbjct: 105 EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAAS 164
Query: 172 MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA-ESVEMFLLAKGFRK 227
+L GG + DI+ +++K+ + ++ V R+ L+ K
Sbjct: 165 LLKQGGKANF-VHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVE--GIK 218
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3hca_A* 3hce_A* 2obf_A* 2onz_A* 2opb_A*
1hnn_A* 1n7i_A* 1n7j_A*
Length = 289
Score = 38.0 bits (87), Expect = 0.002
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 25 SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
R +L + P G L Q ++ S R ++D+GS P + +
Sbjct: 31 EPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEV--SGRTLIDIGSGPTVYQLL 88
Query: 85 AARITGSNANNTRVVAIDILD 105
+A + D L+
Sbjct: 89 SACSHFE-----DITMTDFLE 104
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 32.8 bits (74), Expect = 0.068
Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 30/223 (13%)
Query: 4 PPGSSSRRGLTQKVKNRSCQGS----------SRDWLNRH-INDPYVQRAQL--EGWRAR 50
P GS ++ +K KN+ G ++ W R+ + + +L EGW +
Sbjct: 2 PLGSEVKKKKNKK-KNKKVNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSV 60
Query: 51 SAYKLL-QINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPI 109
+ K+ I + +VD G + A RV+AIDI
Sbjct: 61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFAL------TGMRVIAIDI--DPVK 112
Query: 110 LGVKFFKFDFLDLDSWEFIRQA------IGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCE 163
+ + + + D+V + + + ++
Sbjct: 113 IALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIRTMMS 172
Query: 164 AATFFALE-MLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
F I + + + + + L Q I
Sbjct: 173 PDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIE 215
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 31.7 bits (71), Expect = 0.13
Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 23/183 (12%)
Query: 45 EGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL 104
E W + S ++ E++ ++ ++D+G G + +R + V +DI
Sbjct: 33 EMWDSGSRSTIIPFFEQY--VKKEAEVLDVGCGDGYGTYKLSR------TGYKAVGVDIS 84
Query: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNP-DLVLSDMAYPTIGHRKIDHLRTMSLCE 163
++ G + + L + + +++ I+ L
Sbjct: 85 EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA-----------INSLEWTEEPL 133
Query: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAK 223
A +L G + G T + + K + + E + +
Sbjct: 134 RALNEIKRVLKSDGYACIAIL-GPTAKPRENSYPRLYGKDVVCNTM--MPWEFEQLVKEQ 190
Query: 224 GFR 226
GF+
Sbjct: 191 GFK 193
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 31.4 bits (70), Expect = 0.17
Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 38 YVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTR 97
Y Q E + + + + + + +S +++ G G+ +
Sbjct: 16 YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLL------AGRT 69
Query: 98 VVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR 157
V I+ E + K + +F+ + + D ++S A+ + D +
Sbjct: 70 VYGIEP-SREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT----DDEK 124
Query: 158 TMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
+++ + + ++LN GG + + ++ Q+ H
Sbjct: 125 NVAIAKYS-----QLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFH 167
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, midwest center for structural
genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm
1728} SCOP: c.66.1.13
Length = 275
Score = 30.4 bits (68), Expect = 0.38
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
L+ I+++G G+ S + ++
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVER 143
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 30.0 bits (67), Expect = 0.44
Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 18/147 (12%)
Query: 39 VQRAQLEGWRARSAYKLLQINE----------KHQILQSNRRIVDLGSSP--GSWSQVAA 86
+ Q +L Q + R++ LG + G+ +
Sbjct: 276 IVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNH--LTE 333
Query: 87 RITGSNANNTRVVAIDILD--MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
R+ ++ V +DI + L F F D+ + D+VL +A
Sbjct: 334 RL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 391
Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALE 171
T + LR L +
Sbjct: 392 IATPIEYTRNPLRVFELDFEENLRIIR 418
>3f0h_A Aminotransferase; RER070207000802, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium
rectale}
Length = 376
Score = 30.2 bits (67), Expect = 0.46
Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
+ V + A R + TM E LE +T
Sbjct: 31 SEEVRAIGAEQVPYFRTTEFSSTMLENEKFM---LEYAKAPEGSKAVFMTCSST 81
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 29.9 bits (66), Expect = 0.53
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 62 HQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
R ++DLG + G + A G +R+V +DI
Sbjct: 41 KPEWFRGRDVLDLGCNVGHLTLSIACKWG----PSRMVGLDI 78
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent
methyltransferase, structural genomics, PSI-2, protein
structure initiative; HET: SAH; 1.95A {Agrobacterium
tumefaciens str}
Length = 259
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 40 QRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITG 90
Q + E R R A LL L+ DLG PG+ +++ G
Sbjct: 10 QYLKFEDERTRPARDLLA----QVPLERVLNGYDLGCGPGNSTELLTDRYG 56
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, coiled coil, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3
Length = 210
Score = 29.7 bits (66), Expect = 0.59
Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 25/177 (14%)
Query: 44 LEGWRARSAY--KL--LQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVV 99
+G+R + KL + + L+ + R++ LG++ G+ A I +
Sbjct: 30 FDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD----EGIIY 85
Query: 100 AIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
A++ + + FD + I + + DL+ D+A
Sbjct: 86 AVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV----DLIYQDIAQKNQIE 141
Query: 151 RKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207
+ + ++ +I + +L ++ F+ V H
Sbjct: 142 ILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVF----KSVLKEMEGDFKIVKHGS 194
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative; HET: SAH; 2.30A {Bacillus
cereus atcc 14579} PDB: 2gh1_A
Length = 284
Score = 29.8 bits (66), Expect = 0.60
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
+ IVD G G V + + + ID
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDS 55
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 29.5 bits (66), Expect = 0.62
Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 22/157 (14%)
Query: 28 DWLNRHI--NDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
L R + +DP+ R + Q+ + +++G + G++++
Sbjct: 15 QSLERELANDDPWRLDD---NPFERERHT--QLLRLSLSSGAVSNGLEIGCAAGAFTEKL 69
Query: 86 ARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMA 144
A R+ ID+ + ++ + + + ++ + DL++
Sbjct: 70 APHCK------RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEV 123
Query: 145 YPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
+ +L M+ A ++ML GG +
Sbjct: 124 --------LYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.5 bits (65), Expect = 0.73
Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 14/141 (9%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
++ R++D+G+ G + + + +D + +
Sbjct: 19 CRAEHRVLDIGAGAGHTALAFSPYVQ------ECIGVDATK-------EMVEVASSFAQE 65
Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
L S A +L G FL+
Sbjct: 66 KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125
Query: 185 QGGTTNDILCLLKKHFQKVIH 205
+ +L H ++
Sbjct: 126 -YAPEDPVLDEFVNHLNRLRD 145
>1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein,
structural genomics, JCSG, protein structure initiative,
PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP:
c.66.1.41
Length = 260
Score = 29.2 bits (64), Expect = 0.75
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
L+ N ++D+ + G + A +VVA D+
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAPFVK------KVVAFDL 67
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 29.4 bits (65), Expect = 0.77
Identities = 16/181 (8%), Positives = 35/181 (19%), Gaps = 16/181 (8%)
Query: 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
+ E+ + +++L S G W++ + RV A+D
Sbjct: 26 FVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSG------LADRVTALDGSAE 79
Query: 107 EPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAAT 166
+ + F + + D
Sbjct: 80 MIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWL-----AHVPDDRFEAFWESVR- 133
Query: 167 FFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
+ GG + V V++F
Sbjct: 134 ----SAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELT 189
Query: 227 K 227
+
Sbjct: 190 E 190
>1or8_A Protein arginine N-methyltransferase 1; protein arginine
methylation, adoMet-dependent methylation, transferase;
HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB:
1orh_A* 1ori_A*
Length = 340
Score = 29.3 bits (65), Expect = 0.80
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
++ L ++ ++D+GS G AA+ A +V+ I+ +
Sbjct: 50 FHNRHLFKDKVVLDVGSGTGILCMFAAK-----AGARKVIGIECSSI 91
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 29.0 bits (64), Expect = 0.84
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM 106
+++ L ++ ++D+G G S AA+ V+ +D+ +
Sbjct: 31 IQNKDLFKDKIVLDVGCGTGILSMFAAK-----HGAKHVIGVDMSSI 72
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 29.1 bits (64), Expect = 0.87
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 33 HINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSN 92
H +D Y E +R ++ + RR++D+G G + ++
Sbjct: 9 HTSDYY--FLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKE----- 61
Query: 93 ANNTRVVAIDILDMEPILGVKFFKFDFLDLDSW 125
+ +DI + F D +
Sbjct: 62 -EGIESIGVDINEDMIKFCEGKFNVVKSDAIEY 93
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 29.1 bits (64), Expect = 0.88
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 48 RARSAYKLLQINEKHQILQ-----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID 102
RS L E H++ + + + ++DLG G AA +V+ ID
Sbjct: 20 MPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-----KVLGID 74
Query: 103 I 103
+
Sbjct: 75 L 75
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein
structure initiative; 2.40A {Klebsiella pneumoniae}
Length = 143
Score = 29.1 bits (65), Expect = 0.93
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKIDHLRTMS------LCEAATFFALEMLNI 175
D + ++ D + D+ P++ G ++ + A A+E +
Sbjct: 43 DGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFEL 102
Query: 176 GG-DFLVKTFQ 185
D+++K +Q
Sbjct: 103 EAFDYILKPYQ 113
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A*
Length = 353
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
P+ V + P GH + LR A + + G LV G +
Sbjct: 12 PERVQKALLRPMRGHLDPEVLRVN---RAIQERLAALFDPGEGALVAALAGSGS 62
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 28.5 bits (63), Expect = 1.3
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 52 AYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
A L ++ + ++++ G G+ + + A+ N + + +IDI
Sbjct: 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAK----NNPDAEITSIDI 69
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
Length = 267
Score = 28.0 bits (61), Expect = 1.8
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 31 NRHINDPYVQR-----AQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVA 85
N+ I+D + + +E S L+ L I D+G G + V
Sbjct: 5 NKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVL 64
Query: 86 ARITGSN 92
A
Sbjct: 65 AGHVTGQ 71
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin
metabolism, S-adenosyl-methionine, structural genomics;
1.80A {Geobacter metallireducens gs-15}
Length = 204
Score = 28.2 bits (62), Expect = 1.8
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 16/153 (10%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI-LDMEPILGVKFFKFDFLDLD 123
LQ + + D+G+ S S A+ + N R+ A++ + KF ++
Sbjct: 38 LQDDLVMWDIGAGSASVSIEASNLMP----NGRIFALERNPQYLGFIRDNLKKFVARNVT 93
Query: 124 SWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT 183
E G DL D + ++ + L G ++
Sbjct: 94 LVEAFAPE--GLDDLPDPDRVFIGGSGGMLEEIIDA---------VDRRLKSEGVIVLNA 142
Query: 184 FQGGTTNDILCLLKKHFQKVIHVKPVASRAESV 216
T + L+ H V ++ + +
Sbjct: 143 VTLDTLTKAVEFLEDHGYMVEVACVNVAKTKGL 175
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural genomics consortium, SGC; HET: SAM; 2.50A
{Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 27.8 bits (61), Expect = 2.1
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 23/112 (20%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFK-------- 116
+ +++ GS G S ++ GS RV++ ++ L K +K
Sbjct: 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKL 159
Query: 117 ---------FDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTM 159
DF+ D D V DM P H +
Sbjct: 160 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP---HVTLPVFYPH 208
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein, transferase; HET:
TNA MTA; 1.66A {Methanothermobacterthermautotrophicus}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Length = 298
Score = 27.8 bits (61), Expect = 2.3
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 65 LQSNRRIVDLGSSPGSWS-QVAARITGSNANNTRVVAIDI 103
+ R V +G P + + + + G RV ++I
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYG-----MRVNVVEI 154
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3gb8_A
Length = 1073
Score = 27.6 bits (60), Expect = 2.4
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 11/144 (7%)
Query: 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
Q + + L P +W++V + S NT+ + IL+ +K ++ L
Sbjct: 44 QQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENV----IK-TRWKILPR 98
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEA-ATFFALEMLNIGGDFLV 181
+ E I++ + G ++ + K L E F+
Sbjct: 99 NQCEGIKKYVVG----LIIKTSSDPTCVEKEKVYIG-KLNMILVQILKQEWPKHWPTFIS 153
Query: 182 KTFQGGTTNDILCLLKKHFQKVIH 205
T++ LC K++
Sbjct: 154 DIVGASRTSESLCQNNMVILKLLS 177
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 12/122 (9%)
Query: 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDL 122
+ ++ +RI D+G G+ + + A + V +D+ + + + +
Sbjct: 29 EQVEPGKRIADIGCGTGTATLLLAD-------HYEVTGVDLSEEMLEIAQEKAMETNRHV 81
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVK 182
D W + + + TI +++L+T + + A +L GG L
Sbjct: 82 DFWVQDMRELELPE-----PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136
Query: 183 TF 184
Sbjct: 137 VH 138
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, structural
genomics, JCSG, PSI, protein structure initiative; HET:
PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Length = 393
Score = 27.3 bits (59), Expect = 3.2
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
VL M +GH L M ++ + + GT
Sbjct: 46 HPSVLQAMNVSPVGHLDPAFLALMDEIQSL---LRYVWQTENPLTIAVSGTGTA 96
>2ayx_A Sensor kinase protein RCSC; two independent structural domains,
transferase; NMR {Escherichia coli} SCOP: c.23.1.1
c.23.1.6 PDB: 2ayz_A 2ayy_A
Length = 254
Score = 27.0 bits (59), Expect = 3.3
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYP-TIGHRKIDHLRTMSL--------CEAATFFALEML 173
D + + + D+VLSD+ P G+R +R + L A L
Sbjct: 161 DGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCL 220
Query: 174 NIGG-DFLVKTFQGGTTNDILCLLKKHFQKV 203
G L K T + I L + ++V
Sbjct: 221 ESGMDSCLSKPV---TLDVIKQTLTLYAERV 248
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, joint center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 1h0c_A* 1j04_A*
Length = 393
Score = 27.2 bits (59), Expect = 3.5
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
VL+ + IGH + + L+ M + + + G
Sbjct: 35 APRVLAAGSLRMIGHMQKEMLQIMEEIKQGI---QYVFQTRNPLTL-VVSGSGH 84
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 27.0 bits (58), Expect = 3.7
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 4/71 (5%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCL 195
P VL M+ P +GH + L+ M + + +
Sbjct: 31 PQRVLDAMSRPILGHLHPETLKIM---DDIKEGVRYLFQTNNIATF-CLSASGHGGMEAT 86
Query: 196 LKKHFQKVIHV 206
L + +
Sbjct: 87 LCNLLEDGDVI 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.9 bits (58), Expect = 4.1
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 83 QVAARITGSNANNTRVVAIDILDMEPILGVK 113
Q ++ S ++ A D D P L +K
Sbjct: 20 QALKKLQAS----LKLYA-D--DSAPALAIK 43
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative,
PSI, center for eukaryotic structural genomics, CESG;
2.79A {Cyanidioschyzon merolae strain 10D}
Length = 281
Score = 26.7 bits (58), Expect = 4.3
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 1 MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEG---WRARSAYKLLQ 57
+ P R +V+ Q + L + Q L W A L
Sbjct: 14 LPGTPPDFYRERQRSRVERY--QSPAGAPLQCSVQVQTTQEHPLWTSHVWSG--ARALAD 69
Query: 58 INEKHQILQSNRRIVDLGSSPGSWSQVAAR 87
L + + + +LG+ G S VA
Sbjct: 70 TLCWQPELIAGKTVCELGAGAGLVSIVAFL 99
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 26.8 bits (58), Expect = 4.4
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 93 ANNTRVVAIDILDMEPIL-GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHR 151
V+A D E + + +F +DL E + G + +G
Sbjct: 51 HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFI 110
Query: 152 KIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIH 205
+ +H M +F +E I G +K F ++ I K+ +
Sbjct: 111 QSNHSVIMYNNTMISFNMIEAARING---IKRFFYASSACIYPEFKQLETTNVS 161
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 26.4 bits (58), Expect = 5.2
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFF-------KFDFLD 121
++++++G G + A + +++A D + K++ K
Sbjct: 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRL 130
Query: 122 LDSWEFIRQAIGGNP----DLVLSDMA---YPTIGHRKIDHLR 157
+ + Q G P DL+ D YP ++ LR
Sbjct: 131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLR 173
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase, structural genomics; 1.90A
{Anabaena variabilis atcc 29413}
Length = 279
Score = 26.5 bits (57), Expect = 5.3
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 8/112 (7%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
Q I+DLG G ++ A+ + V+ D + L D
Sbjct: 55 PQPGEFILDLGCGTGQLTEKIAQ------SGAEVLGTDNAATMIE--KARQNYPHLHFDV 106
Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG 176
+ + D V S+ + + ++ F E G
Sbjct: 107 ADARNFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
Length = 225
Score = 26.5 bits (57), Expect = 5.4
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
Q +R +DLG+ G A N NT + ID
Sbjct: 23 QFDRVHIDLGTGDGRNIYKLAI----NDQNTFYIGIDP 56
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine,
virion, membrane, flavivirus, N7-methyltransferase,
2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus}
PDB: 2wa1_A*
Length = 276
Score = 26.2 bits (57), Expect = 5.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 49 ARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAA 86
+R KL I+E+ + + +VDLG GSWS AA
Sbjct: 65 SRGTAKLAWIDERGGV-ELKGTVVDLGCGRGSWSYYAA 101
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial
L-fucose metabolism; 1.66A {Escherichia coli} SCOP:
c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P
1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P
1dzw_P 1e49_P 1e4a_P
Length = 215
Score = 26.4 bits (58), Expect = 5.6
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 61 KHQILQSNRRIVDLGSSPGSWSQVAAR------ITGSNANNTRVVAIDI----LDMEPIL 110
QI+ + + LG + G+ V+ R IT + ++ I + +
Sbjct: 7 ARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKHEE 66
Query: 111 GVK 113
G
Sbjct: 67 GKL 69
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 26.2 bits (56), Expect = 6.9
Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 8/115 (6%)
Query: 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIR 129
+++L + G + V A+++ +L + D +
Sbjct: 85 PVLELAAGMGRLTFPFLD------LGWEVTALEL--STSVLAAFRKRLAEAPADVRDRCT 136
Query: 130 QAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTF 184
G L + + + E L GG FL+
Sbjct: 137 LVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 26.1 bits (57), Expect = 7.7
Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 8/117 (6%)
Query: 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDS 124
R ++DL G++ R D+ D
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLR----RHPQLTGQIWDLPTTRDAARKTIHAHDLGGR-- 230
Query: 125 WEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV 181
EF + + A + H A ++ GG L+
Sbjct: 231 VEFFEKNL--LDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI 285
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 25.9 bits (56), Expect = 7.7
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 70 RIVDLGSSPGSWSQVAARITGSNANNTRVVAIDI 103
+++DLG G S + V + D
Sbjct: 123 KVLDLGCGQGRNSLYLSL------LGYDVTSWDH 150
>3luf_A Two-component system response regulator/ggdef domain protein;
structural genomics, ASA_2441, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB:
3mf4_A*
Length = 259
Score = 25.8 bits (56), Expect = 8.2
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTIGH 150
D+ E R G + L D+ P
Sbjct: 36 DTLEGARHCQGDEYVVALVDLTLPDAPS 63
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A*
Length = 340
Score = 25.6 bits (55), Expect = 9.1
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 60 EKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDF 119
++ + ++ ++D+G G S AA+ A +V+ +D E +
Sbjct: 57 YQNPHIFKDKVVLDVGCGTGILSMFAAK-----AGAKKVLGVDQ--SEILYQAMDIIRLN 109
Query: 120 LDLDSWEFIRQAI 132
D+ I+ I
Sbjct: 110 KLEDTITLIKGKI 122
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 25.6 bits (55), Expect = 9.2
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTT 189
VL M+ P +G M+ E+ + G +
Sbjct: 23 DPRVLRVMSTPVVGQFDPAFTGIMNETMEML---RELFQTKNRWAY-PIDGTSR 72
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional
regulatory protein, alpha/beta doubly wound fold,
phosphorylation; 1.60A {Bacillus subtilis} SCOP:
c.23.1.1
Length = 136
Score = 25.7 bits (56), Expect = 9.9
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKIDHLRTMSLCE--------AATFFALEML 173
D E +++A PDL++ D+ P + G LR L F + L
Sbjct: 35 DGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGL 94
Query: 174 NIGG-DFLVKTFQ 185
+G D++ K F
Sbjct: 95 ELGADDYMTKPFS 107
>3eul_A Possible nitrate/nitrite response transcriptional regulatory
protein NARL (DNA-binding...; central beta strand
flanked by alpha helices; 1.90A {Mycobacterium
tuberculosis}
Length = 152
Score = 25.6 bits (56), Expect = 10.0
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYP-TIGHRKIDHLRTMSL--------CEAATFFALEML 173
D + PD+ L D P G + +R+ L + L
Sbjct: 49 DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQAL 108
Query: 174 NIGG-DFLVKTF 184
G FL+K
Sbjct: 109 QQGAAGFLLKDS 120
>3cz5_A Two-component response regulator, LUXR family; structural genomics,
protein structure initiative; 2.70A {Aurantimonas SP}
Length = 153
Score = 25.7 bits (56), Expect = 10.0
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 123 DSWEFIRQAIGGNPDLVLSDMAYPTI-GHRKIDHLRT--------MSLCEAATFFALEML 173
D+ E R PD+V+ D+ P G H+R + + FAL+
Sbjct: 39 DAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAF 98
Query: 174 NIGG-DFLVKTFQ 185
G ++ K+
Sbjct: 99 EAGASGYVTKSSD 111
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,995,716
Number of extensions: 90226
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 81
Length of query: 227
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 138
Effective length of database: 3,535,514
Effective search space: 487900932
Effective search space used: 487900932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)