HHsearch alignment for GI: 254780314 and conserved domain: pfam01389
>pfam01389 OmpA_membrane OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Probab=92.30 E-value=0.91 Score=24.68 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=68.1
Q ss_pred EEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECEEEEE--CCCEEEEC-CC
Q ss_conf 6899985221146651279888613678820246788733864000112113664355631104786--04525404-56
Q gi|254780314|r 220 IRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITI--SGGGQYFG-DI 296 (351)
Q Consensus 220 vS~qltGGyDtd~eeGAIRAl~ta~iG~PGTlglAgVwASgpNaYY~~SEWaVAAeYaikaTDKl~I--TPG~QY~g-d~ 296 (351)
T Consensus 35 ~~~glf~GYqf-n~~~a~E~-gY~~lG~~-~~~-----~~~~~~~~~~~~~~l~~k~~~pl~d~~~ly~K~G~a~~~~d~ 106 (175)
T pfam01389 35 LTAGAFGGYQI-NNYLAAEL-GYDYLGRM-PYK-----GKGKNNAHKAQGVTLSLKLSYPLTDDLDVYGKVGGALVRADY 106 (175)
T ss_pred CEEEEEEEEEC-CCEEEEEE-EEEECCCC-CCC-----CCCCCCCEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCC
T ss_conf 17899986310-31122687-42431654-335-----534345404689999999888614856799971068996133
Q ss_pred CC----------C-CCCEEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCC--CCCCCCCCCHHCC
Q ss_conf 76----------7-85227787788888515912778987327421135423--4663100110113
Q gi|254780314|r 297 NK----------T-GKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAI--DKGVDLSVGLKKS 350 (351)
Q Consensus 297 ~~----------s-g~DaWk~GlTvDYqItegL~tK~SVqY~D~~~~~~~~~--d~g~d~t~gl~~s 350 (351)
T Consensus 107 ~~~~~~~~~~~~~d~~~~~~~G~G~eY~it~~~~~r~eYq~~~~~g~~~~~~~~~D~~~~slGlsYr 173 (175)
T pfam01389 107 KFYEDANGKTGNHDTGVSPLFALGVEYAVTPELAVRLEYQYLNNIGDLHKQGKRPDNGSASLGISYR 173 (175)
T ss_pred CEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEHHCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 2102566642235677053888888998075827888899922258533567667777799999977