HHsearch alignment for GI: 254780314 and conserved domain: pfam02530
>pfam02530 Porin_2 Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.
Probab=100.00 E-value=2.9e-41 Score=277.01 Aligned_cols=244 Identities=24% Similarity=0.325 Sum_probs=210.0
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEECC----CCEEEEEEEEEECCCHHCCCCCCCCHHEEEEECCCCCCCHHHHEEEHHHEE
Q ss_conf 6877655433342000148997056----861349999974220000001112100012103555511252000110000
Q gi|254780314|r 72 NGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGAR 147 (351)
Q Consensus 72 ng~~e~n~~~~d~~~~g~~~~~a~~----g~~tgv~~~~~~~d~~~~~~~~~~d~~a~~~~~~Ss~l~ldeayLdi~GfR 147 (351)
T Consensus 78 ~~~~~~~~~~~~~~aR~~l~~dtrt~TEyGtlrty~~~~~~~~~g-------~~~~--~g~~~~~~~~l~~A~IqlgGft 148 (378)
T pfam02530 78 DGQGGRLTSDWDAFSRADLNVDTRTETELGTLRTFFESVFNWTTG-------SYTG--DGSDSNGGLGLYFAFIQLGGLR 148 (378)
T ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCC-------CCCC--CCCCCCCCCCEEEEEEEECCEE
T ss_conf 543556665553266589997226552411147799999982378-------8666--6665677510215688871488
Q ss_pred ECCEEEECC-----CCCCCCCCEEEECCCCCCCCCCEEEEEEECCC-EEEEEEHHHCCCCCC-----------CCEEEEE
Q ss_conf 012220024-----44455551023112224443322689982575-451033032146666-----------5403478
Q gi|254780314|r 148 LGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL-LKAGLSTDLLQKDGL-----------KQVLGIG 210 (351)
Q Consensus 148 aG~FySWWD-----EtddIgS~~TL~Nd~rg~dk~~SirYqYe~G~-F~AGiSvDeLE~dg~-----------~n~VGV~ 210 (351)
T Consensus 149 ~G~~~S~fd~~~gy~gd~i~~~~~~~----g~~~~N~isYt~~~GnGfsA~islEd~~~~~~~~~~~~~~~~g~~~PdvV 224 (378)
T pfam02530 149 VGKDYSWFDTWLGYEGDVINNSGGPY----GNTGTNSISYTFDAGTGFSAGISLEELEGTRDLGAYGANSYIGSYTPDVV 224 (378)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCC----CCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 85030143034685553236633456----76225479999974883589998742667655555554455788688789
Q ss_pred EEEEEEECCEEEEEEEEEECCCCCCEEEEEEEECCCCCC-EEEEEEEEECCCCCCCCCCC-------EEEEEEEEEEECE
Q ss_conf 896345412689998522114665127988861367882-02467887338640001121-------1366435563110
Q gi|254780314|r 211 YMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAG-TLDCGAVWASGDNSYYDKSK-------YSVFAGYKFDVAK 282 (351)
Q Consensus 211 g~vsg~aGavS~qltGGyDtd~eeGAIRAl~ta~iG~PG-TlglAgVwASgpNaYY~~SE-------WaVAAeYaikaTD 282 (351)
T Consensus 225 g~v~~~qgwG~~q~~~a~ds~~~~~Av~~~~~~~~g-~g~s~~l~g~Y~~ga~~Y~~~~~~~~~~~~Wav~~~~~~~~t~ 303 (378)
T pfam02530 225 GGVKVDQGWGAFQGVVAYDSDKEEGAVRARLSVKAG-DGDTLNIAGGYASGANRYTGDSEYHNWGGNWAVWAGYTYKATD 303 (378)
T ss_pred EEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 988762221268998742665425044899999867-9845899999815874223554443467750377656862333
Q ss_pred EEEECCCEEEECCCC--CCCCCEEEEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 478604525404567--67852277877888885159127789873274
Q gi|254780314|r 283 SITISGGGQYFGDIN--KTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 (351)
Q Consensus 283 Kl~ITPG~QY~gd~~--~sg~DaWk~GlTvDYqItegL~tK~SVqY~D~ 329 (351)
T Consensus 304 k~~~~~~~~~~~~~~~~~~d~~~~~vg~nv~ytpV~nl~~~~Ev~Yt~~ 352 (378)
T pfam02530 304 KTAITPGAQWGGAGNVCNPDFDGWAVGANVDYTIVDNLTFTAEVRYTDL 352 (378)
T ss_pred EEEEEECEEEECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf 0898203375024543477754268888788788099689789999746