BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(351 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254039991|gb|ACT56787.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 351
Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats.
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60
MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL
Sbjct: 1 MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60
Query: 61 EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES 120
EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES
Sbjct: 61 EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES 120
Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL 180
DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL
Sbjct: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL 180
Query: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN
Sbjct: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
Query: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG
Sbjct: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
Query: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF
Sbjct: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
>gi|116252521|ref|YP_768359.1| outer membrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115257169|emb|CAK08264.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 340
Score = 322 bits (824), Expect = 7e-86, Method: Composition-based stats.
Identities = 85/319 (26%), Positives = 138/319 (43%), Gaps = 58/319 (18%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG +E N +D +G ++ A + G +TGV ++ D
Sbjct: 58 KIEGYIRFQVDVGDQPLNG-SESNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 116
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ +D A+ ++ L + G R G + SW D E + + S
Sbjct: 117 NA-------TDQDAI----------LDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSIV 159
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKI 220
TL+N SL Y++ G AG+S D L+ D +G+ + G
Sbjct: 160 TLHN---------SLRYQYESGTFYAGISVDELEDGFYKSDEEPNNVGVAFGVGGTAGAF 210
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
+TGG+D + AIRA + + GTL AV++SG NSYY ++++V A Y
Sbjct: 211 SYQITGGWDFDNEDGAIRAMGTVDIG-PGTLGLAAVYSSGPNSYYSAAEWAVAAEYAIKA 269
Query: 281 AKSITISGGGQYFGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335
+ I+ G QY+GD + +G D W G++ Y I A+ASV + D
Sbjct: 270 TDKLKITPGVQYYGDYYVDGDDFSGGDAWKVGLTVDYQIVDNFYAKASVQYLDP------ 323
Query: 336 AIDKGVDLSVG---LKKSF 351
+ D + G L++SF
Sbjct: 324 --EDEDDSTAGYFRLQRSF 340
>gi|86358049|ref|YP_469941.1| porin outer membrane protein [Rhizobium etli CFN 42]
gi|86282151|gb|ABC91214.1| porin outer membrane protein [Rhizobium etli CFN 42]
Length = 340
Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats.
Identities = 85/319 (26%), Positives = 136/319 (42%), Gaps = 58/319 (18%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG + N +D +G ++ A + G +TGV ++ D
Sbjct: 58 KIEGYIRFQVDVGDQPLNG-SASNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 116
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ +D A+ ++ L + G R G + SW D E + + S
Sbjct: 117 NA-------TDQDAI----------LDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSIV 159
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKI 220
TL+N S+ Y++ G AGLS D L+ +G+ + G
Sbjct: 160 TLHN---------SIRYQYESGDFYAGLSVDELEDGFYKTGEGPNNVGVAFGVGGTAGAF 210
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
VTGG+D + AIRA + + G L AV++SG NSYY ++++V A Y
Sbjct: 211 SYQVTGGWDFDNEDGAIRAMGTVEIG-PGALGLAAVYSSGPNSYYSAAEWAVAAEYAIKA 269
Query: 281 AKSITISGGGQYFGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335
+ I+ G QY+GDI + + D W G++ Y I A+ASV + D
Sbjct: 270 TDKLKITPGVQYYGDIYEAGDDFSDNDAWKVGLTVDYQIVDNFYAKASVQYFDP------ 323
Query: 336 AIDKGVDLSVG---LKKSF 351
D G D + G L++SF
Sbjct: 324 --DNGDDSTSGYFRLQRSF 340
>gi|209549668|ref|YP_002281585.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209535424|gb|ACI55359.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 342
Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 62/301 (20%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ +D A+
Sbjct: 77 NDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQDAI-------- 121
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + S TL+N S+ Y++ G
Sbjct: 122 --LDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN---------SMRYQYESGT 170
Query: 189 LKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AGLS D L+ D +G+ + G VTGG+D + AIRA +
Sbjct: 171 FYAGLSVDELEDGVYKADEEANNVGVAFGVGGTAGAFSYQVTGGWDFDNEDGAIRAMGTV 230
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGK-- 301
+ GTL V++SG NSYY +++++ A Y + I+ QY+G+ K
Sbjct: 231 EIG-PGTLGLAGVYSSGPNSYYSSAEWAIAAEYAIKATDKLKITPAVQYYGNYFGGDKAV 289
Query: 302 --------DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKS 350
D W G++ Y I A+ASV + D D G D + G L++S
Sbjct: 290 PDDFDGLGDAWKVGLTVDYQIVDNFYAKASVQYLDP--------DDGDDSTTGYFRLQRS 341
Query: 351 F 351
F
Sbjct: 342 F 342
>gi|86356987|ref|YP_468879.1| porin outer membrane protein [Rhizobium etli CFN 42]
gi|86281089|gb|ABC90152.1| porin outer membrane protein [Rhizobium etli CFN 42]
Length = 340
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 58/319 (18%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG + N +D +G ++ A + G +TGV ++ D
Sbjct: 58 KIEGYIRFQVDVGDQPLNG-SASNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 116
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ +D A+ ++ L + G R G + SW D E + + SP
Sbjct: 117 NA-------TDQDAI----------LDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPV 159
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKI 220
TL+N S+ Y++ AG+S D L+ D +G+ G
Sbjct: 160 TLHN---------SIRYQYETEAFYAGISVDELEDGFYKTDEDPNNVGVAVGLGGKGGIF 210
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
+T GYD A+RA + + GTL AV+A+G +SYY +++++ A Y
Sbjct: 211 SYQITAGYDVDNEEGAVRAMGTVDIG-PGTLGLAAVYATGPSSYYTAAEWAIAAEYAIKA 269
Query: 281 AKSITISGGGQYFGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335
+ I+ G QY+ D + D W G++ Y I A+ASV + D
Sbjct: 270 TDKLKITPGVQYYSDYGIDGNDFADGDAWKVGLTVDYQIVDNFYAKASVQYLDP------ 323
Query: 336 AIDKGVDLSVG---LKKSF 351
+ G D + G L++SF
Sbjct: 324 --EDGDDSTSGYFRLQRSF 340
>gi|190891061|ref|YP_001977603.1| porin outer membrane protein [Rhizobium etli CIAT 652]
gi|190696340|gb|ACE90425.1| porin outer membrane protein [Rhizobium etli CIAT 652]
Length = 339
Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats.
Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 61/311 (19%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+ +D
Sbjct: 64 RFQVNVGEDVGGDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQ 116
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
A ++ L + G R G + SW D E + + SP TL+N
Sbjct: 117 EA----------KLDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN-------- 158
Query: 178 MSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGT 232
S+ Y++ G AG+S D L+ +G+ G +T GYD
Sbjct: 159 -SIRYQYETGDFYAGISVDELEDGPFYDGETPNNVGVAVGLGGKAGAFSYQITAGYDVDN 217
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY 292
A+RA + + GTL AV+++G N+YY+ ++++V A Y + I+ G QY
Sbjct: 218 EEGAVRAMGTVEIG-PGTLGLAAVYSTGPNAYYNAAEWAVAAEYAIKATDKLKITPGVQY 276
Query: 293 FGDI---------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDL 343
+G+ + + D W G++ Y I A+ASV + D D G D
Sbjct: 277 YGNYGVVNPTTDADFSDNDAWKVGLTVDYQIVDNFYAKASVQYLDP--------DDGDDS 328
Query: 344 SVG---LKKSF 351
+ G L++SF
Sbjct: 329 TTGYFRLQRSF 339
>gi|327189375|gb|EGE56543.1| porin [Rhizobium etli CNPAF512]
Length = 346
Score = 309 bits (790), Expect = 6e-82, Method: Composition-based stats.
Identities = 77/307 (25%), Positives = 125/307 (40%), Gaps = 62/307 (20%)
Query: 72 NGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAF 127
N N +D +G ++ A + G +TGV ++ D+ +D A+
Sbjct: 75 NSVTRPNDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQNAI-- 125
Query: 128 TVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSY 182
++ L + G R G + SW D E + + S TL+N S+ Y
Sbjct: 126 --------LDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN---------SMRY 168
Query: 183 RHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
++ G AGLS D L+ +G+ + G +TGG+D + AI
Sbjct: 169 QYESGTFYAGLSVDELEDGVYKAGETSNNVGVAFGVGGTAGAFSYQITGGWDFDNEDGAI 228
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDIN 297
RA + + GTL V++SG NSYY +++++ A Y + I+ QY+G+
Sbjct: 229 RAMGTVEIG-PGTLGLAGVYSSGPNSYYSSAEWAIAAEYAIKATDKLKITPAVQYYGNYF 287
Query: 298 KTG----------KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG- 346
G D W G++ Y I A+ASV + D D G D + G
Sbjct: 288 GGGTAVPDDFDGLGDAWKVGLTVDYQIVDNFYAKASVQYLDP--------DDGDDSTSGY 339
Query: 347 --LKKSF 351
L++SF
Sbjct: 340 FRLQRSF 346
>gi|116251265|ref|YP_767103.1| outer membrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255913|emb|CAK06994.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 340
Score = 308 bits (788), Expect = 9e-82, Method: Composition-based stats.
Identities = 81/319 (25%), Positives = 133/319 (41%), Gaps = 58/319 (18%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG +E N +D +G ++ A + G +TGV ++ D
Sbjct: 58 KINGYIRFQVDVGDQPLNG-SESNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 116
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ +D A ++ L + G R G + SW D E + + SP
Sbjct: 117 NA-------TDQSA----------KLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPV 159
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKI 220
TL+N S+ Y++ AG+S D L+ D +G+ G
Sbjct: 160 TLHN---------SIRYQYETDAFYAGISVDELEDGYYKADEEPNNVGVAVGLGGKAGAF 210
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
+T GYD + A+RA + + GTL AV+A+G +SYY K++++V A Y
Sbjct: 211 SYQITAGYDVDNEDGAVRAMGTVDIG-PGTLGLAAVYATGPSSYYTKAEWAVAAEYAIKA 269
Query: 281 AKSITISGGGQYFGDINKT-----GKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335
+ I+ G QY+ + T D W G++ Y I A+ASV + D
Sbjct: 270 TDKLKITPGVQYYSNYGITDDDFDDGDAWKVGLTVDYQIVDNFYAKASVQYLDP------ 323
Query: 336 AIDKGVDLSVG---LKKSF 351
+ D + G L++SF
Sbjct: 324 --EDDDDSTSGYFRLQRSF 340
>gi|218460928|ref|ZP_03501019.1| putative outer membrane protein [Rhizobium etli Kim 5]
Length = 340
Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats.
Identities = 80/319 (25%), Positives = 133/319 (41%), Gaps = 58/319 (18%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG ++ N +D +G ++ A + G +TGV ++ D
Sbjct: 58 KINGYIRFQVDVGDQPLNG-SDSNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 116
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ SD A ++ L + G R G + SW D E + + SP
Sbjct: 117 NA-------SDQSA----------KLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPV 159
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKI 220
TL+N S+ Y++ AG+S D L+ D +G+ G
Sbjct: 160 TLHN---------SIRYQYETDAFYAGISVDELEDGFYKSDEEPNNVGVAVGLGGKAGAF 210
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
+T GYD A+RA + + GTL AV+ASG +SYY K+++++ A Y
Sbjct: 211 SYQITAGYDVDNEEGAVRAMGTVDIG-PGTLGLAAVYASGPSSYYTKAEWAIAAEYAIKA 269
Query: 281 AKSITISGGGQYFGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335
+ I+ G QY+ + + + D W G++ Y I A+ASV + D
Sbjct: 270 TDKLKITPGVQYYSNYYVAGDDFSDDDAWKVGLTVDYQIVDNFYAKASVQYLDP------ 323
Query: 336 AIDKGVDLSVG---LKKSF 351
+ D + G L++SF
Sbjct: 324 --ENDDDATAGYFRLQRSF 340
>gi|241205030|ref|YP_002976126.1| porin [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240858920|gb|ACS56587.1| porin [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 340
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 79/312 (25%), Positives = 128/312 (41%), Gaps = 62/312 (19%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+ +D
Sbjct: 64 RFQVNVGEDVGGDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQ 116
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
A+ ++ L + G R G + SW D E + + S TL+N
Sbjct: 117 DAI----------LDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN-------- 158
Query: 178 MSLSYRHSFGLLKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT 232
S+ Y++ G AGLS D L+ D +G+ + G +TGGYD
Sbjct: 159 -SIRYQYESGTFYAGLSVDELEDGVYKADEEANNVGVAFGVGGTAGAFSYQITGGYDVDN 217
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY 292
+ A+RA + + GTL V++SG NSYY ++++V A Y + I+ QY
Sbjct: 218 EDGAVRAMGTVDIG-PGTLGLAGVYSSGPNSYYSSAEWAVAAEYAIKATDKLKITPAVQY 276
Query: 293 FGDINKTGK----------DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVD 342
+G+ K D W G++ Y I A+ASV + D D G D
Sbjct: 277 YGNYFGGDKAVPDDFDGLGDAWKVGLTVDYQIVDNFYAKASVQYLDP--------DDGDD 328
Query: 343 LSVG---LKKSF 351
+ G L++SF
Sbjct: 329 STTGYFRLQRSF 340
>gi|218516853|ref|ZP_03513693.1| porin outer membrane protein [Rhizobium etli 8C-3]
Length = 413
Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats.
Identities = 77/322 (23%), Positives = 124/322 (38%), Gaps = 74/322 (22%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+
Sbjct: 64 RFQVDVGEDVGGDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA---------- 113
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
+ + ++ L + G R G + SW D E + + S TL+N
Sbjct: 114 -------STQEAKLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSVETLHN-------- 158
Query: 178 MSLSYRHSFGLLKAGLSTDLLQK--------------------DGLKQVLGIGYMASYAI 217
S+ Y++ G AGLS D L+ D +G+ +
Sbjct: 159 -SIRYQYESGDFYAGLSVDELEDGVYQGTFAPGVLPGTTVFTADDGPNNVGVAFGIGGKA 217
Query: 218 GKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYK 277
G VTGG+D + AIRA + + GTL V++SG NSYY ++++V A Y
Sbjct: 218 GAFSYQVTGGWDFDNEDGAIRAMGTVEIG-PGTLGLAGVYSSGPNSYYSAAEWAVAAEYA 276
Query: 278 FDVAKSITISGGGQYFGDINKTGK----------DGWSAGISAKYMISSGLEAQASVAFN 327
+ I+ G QY+G+ GK D W G++ Y I A+ASV +
Sbjct: 277 IKATDKLKITPGVQYYGNYFGGGKEVPEDFDGLGDAWKVGLTVDYQIVDNFYAKASVQYL 336
Query: 328 DNFVKKGVAIDKGVDLSVGLKK 349
D D G D + G +
Sbjct: 337 DP--------DDGDDSTTGYFR 350
>gi|218458992|ref|ZP_03499083.1| putative outer membrane protein [Rhizobium etli Kim 5]
Length = 305
Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats.
Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 55/311 (17%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG + N +D +G ++ A + G +TGV ++ D
Sbjct: 30 KIEGYIRFQVDVGDQPLNG-SLSNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 88
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ SD A+ ++ L + G R G + SW D E + + S
Sbjct: 89 NA-------SDQDAI----------LDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSIV 131
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKI 220
TL+N S+ Y++ G AG+S D L+ +G+ + G
Sbjct: 132 TLHN---------SIRYQYESGTFYAGISVDELEDGFYKTGEEPNNVGVAFGVGGTAGAF 182
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
VTGG+D + A+RA + + GTL AV++SG NSYY ++++V A Y
Sbjct: 183 SYQVTGGWDFDNEDGAVRAMGTVEIG-PGTLGLAAVYSSGPNSYYSAAEWAVAAEYAIKA 241
Query: 281 AKSITISGGGQYFGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGV 335
+ I+ G QY+GD + + D W G++ Y I A+ASV + D
Sbjct: 242 TDKLKITPGVQYYGDYYVSGDDFSDGDAWKVGLTVDYQIVDNFYAKASVQYLDP------ 295
Query: 336 AIDKGVDLSVG 346
+ D + G
Sbjct: 296 --EDADDSTSG 304
>gi|209548589|ref|YP_002280506.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209534345|gb|ACI54280.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 337
Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 57/296 (19%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ +D A
Sbjct: 77 NDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQEA--------- 120
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + SP TL+N SL Y++ G
Sbjct: 121 -KLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SLRYQYESGD 170
Query: 189 LKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AG+S D L+ +G+ G +T GYD A+RA +
Sbjct: 171 FYAGISVDELEDSPFYDGEEANNVGVAVGLGGKAGAFSYQITAGYDTDNEEGAVRAMGTV 230
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI-----NK 298
+ GTL AV+++ N+YY+ +++++ A Y + I+ G QY+ D +
Sbjct: 231 EIG-PGTLGLAAVYSTNPNAYYNAAEWAIAAEYAIKATDKLKITPGVQYYSDYGVVGSDF 289
Query: 299 TGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
D W G++ Y I A+ASV + D + D + G L++SF
Sbjct: 290 GDGDAWKVGLTVDYQIVDNFYAKASVQYLDP--------EDADDSTTGYFRLQRSF 337
>gi|190892125|ref|YP_001978667.1| porin outer membrane protein [Rhizobium etli CIAT 652]
gi|190697404|gb|ACE91489.1| porin outer membrane protein [Rhizobium etli CIAT 652]
Length = 355
Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats.
Identities = 80/327 (24%), Positives = 128/327 (39%), Gaps = 77/327 (23%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+
Sbjct: 64 RFQVNVGEDVGGDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA---------- 113
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
+ + ++ L + G R G + SW D E + + S TL+N
Sbjct: 114 -------STQEAKLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSVETLHN-------- 158
Query: 178 MSLSYRHSFGLLKAGLSTDLLQK--------------------DGLKQVLGIGYMASYAI 217
S+ Y++ G AGLS D L+ D +G+ +
Sbjct: 159 -SIRYQYESGTFYAGLSVDELEDGVYQGTFAPGVLPGTTVFTADDGPNNVGVAFGIGGTA 217
Query: 218 GKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYK 277
G VTGG+D + AIRA + + GTL V++SG NSYY ++++V A Y
Sbjct: 218 GAFSYQVTGGWDFDNEDGAIRAMGTVEIG-PGTLGLAGVYSSGPNSYYSAAEWAVAAEYA 276
Query: 278 FDVAKSITISGGGQYFGDINKTGK----------DGWSAGISAKYMISSGLEAQASVAFN 327
+ I+ G QY+G+ GK D W G++ Y I A+ASV +
Sbjct: 277 IKATDKLKITPGVQYYGNYFGGGKEVPEDFDGLGDAWKVGLTVDYQIVDNFYAKASVQYL 336
Query: 328 DNFVKKGVAIDKGVDLSVG---LKKSF 351
D D G D + G L++SF
Sbjct: 337 DP--------DDGDDSTTGYFRLQRSF 355
>gi|86359168|ref|YP_471060.1| porin outer membrane protein [Rhizobium etli CFN 42]
gi|86283270|gb|ABC92333.1| porin outer membrane protein [Rhizobium etli CFN 42]
Length = 347
Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats.
Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 58/297 (19%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ + K
Sbjct: 86 NDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-----------------SAQK 128
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + SP TL+N S+ Y++
Sbjct: 129 AQLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYEIDA 179
Query: 189 LKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AG+S D L+ +G+ G +T GYD A+RA +
Sbjct: 180 FYAGISVDELEDSPFYNGETANNVGVAVGLGGKAGAFSYQITAGYDTDNEEGAVRAMGTV 239
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGK-- 301
V GTL V+AS N+YY+K+++++ A Y + I+ QY+ + T
Sbjct: 240 AVG-PGTLGLAVVYASNPNAYYNKAEWAIAAEYAIKATDKLKITPAVQYYNNYGVTAGEF 298
Query: 302 ----DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
D W AG++ Y I L A+ SV + D D D++ G L+++F
Sbjct: 299 NDDVDAWKAGVTIDYQIVDNLSAKVSVQYLDP--------DNADDVTSGYFRLQRAF 347
>gi|218680157|ref|ZP_03528054.1| porin [Rhizobium etli CIAT 894]
Length = 347
Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats.
Identities = 72/297 (24%), Positives = 121/297 (40%), Gaps = 58/297 (19%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ S K
Sbjct: 86 NDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-----------------SSQK 128
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ + + G R G + SW D E + + SP TL+N S+ Y++
Sbjct: 129 AQLDSAYIDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYETDA 179
Query: 189 LKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AG+S D L+ +G+ G +T GYD A+RA +
Sbjct: 180 FYAGISVDELEDSPFYDGETANNVGVAVGLGGKAGAFSYQITAGYDTDNEEGAVRAMGTV 239
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD- 302
V GTL V+AS N+YY+K+++++ A Y + I+ G QY+ + T +
Sbjct: 240 AVG-PGTLGLAVVYASNPNAYYNKAEWAIAAEYAIKATDKLKITPGVQYYDNYGVTSGEF 298
Query: 303 -----GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
W AG++ Y I L A+ SV + D D D++ G L+++F
Sbjct: 299 NDDVNAWKAGVTIDYQIVDNLAAKVSVQYLDP--------DNAKDVTSGYFRLQRAF 347
>gi|190893414|ref|YP_001979956.1| porin outer membrane protein [Rhizobium etli CIAT 652]
gi|190698693|gb|ACE92778.1| porin outer membrane protein [Rhizobium etli CIAT 652]
Length = 347
Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats.
Identities = 73/297 (24%), Positives = 120/297 (40%), Gaps = 58/297 (19%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ + K
Sbjct: 86 NDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-----------------SAQK 128
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + SP TL+N SL Y++
Sbjct: 129 AQLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SLRYQYETDA 179
Query: 189 LKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AG+S D L+ +G+ G +T GYD A+RA +
Sbjct: 180 FYAGISVDELEDSPFYNGETANNVGVAIGLGGKAGAFSYQITAGYDTDNEEGAVRAMGTV 239
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGK-- 301
V GTL V+AS N+YY+K+++++ A Y + I+ QY+ + T
Sbjct: 240 AVG-PGTLGLAVVYASNPNAYYNKAEWAIAAEYAIKATDKLKITPAVQYYNNYGVTAGEF 298
Query: 302 ----DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
D W AG++ Y I L A+ SV + D D D++ G L+++F
Sbjct: 299 NDDVDAWKAGVTIDYQIVDNLSAKVSVQYLDP--------DNAEDVTSGYFRLQRAF 347
>gi|327189631|gb|EGE56781.1| porin [Rhizobium etli CNPAF512]
Length = 347
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 58/297 (19%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ + K
Sbjct: 86 NDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-----------------SAQK 128
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + SP TL+N S+ Y++
Sbjct: 129 AQLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYETDS 179
Query: 189 LKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AG+S D L+ +G+ G VT GYD A+RA +
Sbjct: 180 FYAGISVDELEDGPFYHGETPNNVGVAVGLGGKAGIFSYQVTAGYDVDNEEGAVRAMGTV 239
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD- 302
V GTL V+A+ N+YY+K+++++ A Y + I+ QY+ + T +
Sbjct: 240 AVG-PGTLGLAVVYATAPNAYYNKAEWAIAAEYAIKATDKLKITPAVQYYDNYGVTAGEF 298
Query: 303 -----GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
W AG++ Y I L A+ SV + D D D++ G L+++F
Sbjct: 299 NDDVSAWKAGVTIDYQIVDNLSAKVSVQYLDP--------DNAEDVTSGYFRLQRAF 347
>gi|241203877|ref|YP_002974973.1| porin [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857767|gb|ACS55434.1| porin [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 335
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 57/307 (18%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+ +D
Sbjct: 64 RFQVNVGEDIGGDSDWDATTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQ 116
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
A ++ L + G R G + SW D E + + SP TL+N
Sbjct: 117 AA----------KLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN-------- 158
Query: 178 MSLSYRHSFGLLKAGLSTDLLQK-----DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT 232
S+ Y++ AG+S D L+ D +G+ G +T GYD
Sbjct: 159 -SIRYQYETDSFYAGISVDELEDGFYKTDEEANNVGVAVGLGGKAGAFSYQITAGYDVDN 217
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY 292
+ A+RA + + GTL AV+A+G +SYY K+++++ A Y + I+ G QY
Sbjct: 218 EDGAVRAMGTVDIG-PGTLGLAAVYATGPSSYYTKAEWAIAAEYAIKATDKLKITPGVQY 276
Query: 293 FGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG- 346
+ + + + + W G++ Y I A+ASV + D + D + G
Sbjct: 277 YSNYYVAGDDFSDNEAWKVGLTVDYQIVDNFYAKASVQYLDP--------EDADDSTTGY 328
Query: 347 --LKKSF 351
L++SF
Sbjct: 329 FRLQRSF 335
>gi|209550902|ref|YP_002282819.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209536658|gb|ACI56593.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 347
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 58/297 (19%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ + K
Sbjct: 86 NDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-----------------SAQK 128
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ + + G R G + SW D E + + SP TL+N S+ Y++
Sbjct: 129 AQLDSAYIDIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYETDA 179
Query: 189 LKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
AG+S D L+ +G+ G +T GYD A+RA +
Sbjct: 180 FYAGISVDELEDSPFYDGETANNVGVAVGLGGKAGAFSYQITAGYDTDNEEGAVRAMGTV 239
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD- 302
V GTL V+A+ N+YY+K+++++ A Y + I+ QY+ + T +
Sbjct: 240 AVG-PGTLGLAVVYATNPNAYYNKAEWAIAAEYAIKATDKLKITPAVQYYDNYGVTAGEF 298
Query: 303 -----GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
W AG++ Y I L A+ SV + D D D++ G L+++F
Sbjct: 299 NDDVSAWKAGVTIDYQIVDNLAAKVSVQYLDP--------DNAADVTSGYFRLQRAF 347
>gi|527558|emb|CAA56769.1| RopA2 [Rhizobium leguminosarum bv. viciae 248]
Length = 357
Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats.
Identities = 75/316 (23%), Positives = 124/316 (39%), Gaps = 77/316 (24%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ +D +
Sbjct: 77 NDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQPS--------- 120
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + S TL+N S+ Y++
Sbjct: 121 -KLDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN---------SIRYQYETDS 170
Query: 189 LKAGLSTDLLQK--------------------DGLKQVLGIGYMASYAIGKIRSTVTGGY 228
AG+S D L+ D +G+ + + G VTGG+
Sbjct: 171 FYAGISVDELEDGVYQGTFTPGVIPGTTDFTADDGPNNVGVAFGVAGKAGAFSYQVTGGW 230
Query: 229 DAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISG 288
D + AIRA + + GT V++SG NSYY ++++V A Y + I+
Sbjct: 231 DVDNEDGAIRAMGTVDIG-PGTFGLAGVYSSGPNSYYSSAEWAVAAEYAIKATDKLKITP 289
Query: 289 GGQYFGDINKTGK----------DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAID 338
G QY+G+ GK D W G++ Y I A+ASV + D
Sbjct: 290 GVQYYGNYFGGGKEVPEDFDGLGDAWKVGLTVDYQIVENFYAKASVQYLDP--------Q 341
Query: 339 KGVDLSVG---LKKSF 351
G D + G L+++F
Sbjct: 342 DGEDSTSGYFRLQRAF 357
>gi|585612|sp|Q05811|OM3A_RHILV RecName: Full=Outer membrane protein IIIA; Short=OMPIIIA; Flags:
Precursor
Length = 366
Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats.
Identities = 73/300 (24%), Positives = 114/300 (38%), Gaps = 67/300 (22%)
Query: 78 NSLAYDIPVK---GNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKL 134
N +D + + + G +TGV ++ D+ SD A+
Sbjct: 77 NDSDWDAVTAVRFSSRKSDTEYGPLTGVIVMQFNADNA-------SDQDAI--------- 120
Query: 135 SVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLL 189
++ L + G R G + SW D E + + S TL+N S+ Y++ G
Sbjct: 121 -LDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN---------SIRYQYESGTF 170
Query: 190 KAGLSTDLLQK--------------------DGLKQVLGIGYMASYAIGKIRSTVTGGYD 229
AGLS D L+ D +G+ + G VTGG+D
Sbjct: 171 YAGLSVDELEDGVYQGTFTPGVIPGTTDFTADDGPNNVGVAFGIGGTAGAFSYQVTGGWD 230
Query: 230 AGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGG 289
+ AIRA + + GT V++SG NSYY ++++V A Y + I+ G
Sbjct: 231 VDNEDGAIRAMGTVEIG-PGTFGLAGVYSSGPNSYYSSAEWAVAAEYAIKATDKLKITPG 289
Query: 290 ---GQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG 346
G D + G D W G++ Y I A+ASV + D G D + G
Sbjct: 290 RWHGHVPEDFDGLG-DAWKVGLTVDYQIVENFYAKASVQYLDP--------QDGEDSTSG 340
>gi|218674538|ref|ZP_03524207.1| porin [Rhizobium etli GR56]
Length = 254
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 58/289 (20%)
Query: 86 VKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSL 141
+G ++ A + G +TGV ++ D+ + Q ++ +
Sbjct: 1 TRGQVQFTAKSDTEYGPLTGVIVMQFNADNASAQQ-----------------AKLDSAYI 43
Query: 142 SMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTD 196
+ G R G + SW D E + + SP TL+N S+ Y++ AG+S D
Sbjct: 44 DIAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYETDAFYAGISVD 94
Query: 197 LLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTL 251
L+ +G+ G +T GYD A+RA + V GTL
Sbjct: 95 ELEDSPFYNGETANNVGVAVGLGGKAGAFSYQITAGYDTDNEEGAVRAMGTVAVG-PGTL 153
Query: 252 DCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD------GWS 305
V+AS N+YY+K+++++ A Y + I+ QY+ + T + W
Sbjct: 154 GLAVVYASNPNAYYNKAEWAIAAEYAIKATDKLKITPAVQYYDNYGVTAGEFNDDVSAWK 213
Query: 306 AGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
AG++ Y I L + SV + D D D++ G L+++F
Sbjct: 214 AGVTIDYQIVDNLSTKISVQYLDP--------DNADDVTSGFFRLQRAF 254
>gi|218506832|ref|ZP_03504710.1| porin outer membrane protein [Rhizobium etli Brasil 5]
Length = 238
Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 50/265 (18%)
Query: 88 GNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSM 143
G ++ + G +TGV ++ D+ +D A ++ L +
Sbjct: 1 GQVQFTVKSDTEYGPLTGVIVMQFNADNA-------TDQEA----------KLDSAYLDV 43
Query: 144 KGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLL 198
G R G + SW D E + + SP TL+N S+ Y++ G AG+S D L
Sbjct: 44 AGFRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYETGDFYAGISVDEL 94
Query: 199 QKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDC 253
+ +G+ G +T GYD A+RA + + GTL
Sbjct: 95 EDGPFYDGETPNNVGVAVGLGGKAGAFSYQITAGYDVDNEEGAVRAMGTVEIG-PGTLGL 153
Query: 254 GAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI---------NKTGKDGW 304
AV+++G N+YY+ ++++V A Y + I+ G QY+G+ + + D W
Sbjct: 154 AAVYSTGPNAYYNAAEWAVAAEYAIKATDKLKITPGVQYYGNYGVVNPTTDADFSDNDAW 213
Query: 305 SAGISAKYMISSGLEAQASVAFNDN 329
G++ Y I A+ASV + D
Sbjct: 214 KVGLTVDYQIVDNFYAKASVQYLDP 238
>gi|218679351|ref|ZP_03527248.1| porin [Rhizobium etli CIAT 894]
Length = 304
Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 47/274 (17%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG + N +D +G ++ A + G +TGV ++ D
Sbjct: 59 KIEGYIRFQVDIGDQPLNG-SASNDSDWDAKTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 117
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ SD A +++ L + G R G + SW D E + + SP
Sbjct: 118 NA-------SDQSA----------ALDSAYLDIAGFRAGLFYSWWDDGLSGETDDIGSPV 160
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKI 220
TL+N SL Y++ G AG+S D L+ G+ G
Sbjct: 161 TLHN---------SLRYQYETGDFYAGISVDELEDSPFYDGETANNWGVAVGLGGKAGAF 211
Query: 221 RSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDV 280
+T GYD A+RA + V GTL AV+++ N+YY+ ++++V A Y
Sbjct: 212 SYQITAGYDTDNEEGAVRAMGTVDVG-PGTLGLAAVYSTNPNAYYNAAEWAVAAEYAIKA 270
Query: 281 AKSITISGGGQYFGDINKTG-----KDGWSAGIS 309
+ I+ G QY+ + +G D W G++
Sbjct: 271 TDKLKITPGVQYYSNYGVSGSDFADGDAWKVGLT 304
>gi|15964809|ref|NP_385162.1| outer membrane protein [Sinorhizobium meliloti 1021]
gi|307309697|ref|ZP_07589349.1| porin [Sinorhizobium meliloti BL225C]
gi|15073987|emb|CAC45628.1| Probable outer membrane protein [Sinorhizobium meliloti 1021]
gi|306899909|gb|EFN30532.1| porin [Sinorhizobium meliloti BL225C]
Length = 349
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 39/314 (12%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNS---LAYDIPVKGNLEVNANA----GDVTGVAKLKL 107
K+GG + +N F+ +D+ + + +A + G +TG +
Sbjct: 58 KIGGYIRVQGDFGRDNVNHLTSFDDDGTSDWDMFSRAYISFDAKSDTEYGTLTGFFASEF 117
Query: 108 AVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTL 167
SD + + S + V+E + + G R G++ SW D+
Sbjct: 118 N-----------SDTDSASDGGGDSHIDVDEAYIELGGFRAGFFYSWWDK-----GLNGE 161
Query: 168 YNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTG 226
+ + S+ Y + G + G++ D L+ K +G+ + S ++G + + G
Sbjct: 162 TDSIGENTEFNSVRYTYDGGTFQVGVAVDELEGTSTKPNGVGVEGIVSASLGGVTFDLLG 221
Query: 227 GYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITI 286
YD AIRA +S+ GT +WASG N+Y+ S+++V A Y+F+V+ + I
Sbjct: 222 SYDTEWEEGAIRALLSADAG-PGTFQVAGIWASGSNAYWHDSEWAVAASYRFNVSDKLAI 280
Query: 287 SGGGQYFGDINKTGK---------DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAI 337
+ G QY+G +N++ K D W G++A Y I+ GL + ++ + D
Sbjct: 281 TPGAQYWGGLNESDKLGGRFDNDADQWRVGLTADYDITEGLATRFAINYTDPSNAP---- 336
Query: 338 DKGVDLSVGLKKSF 351
V + L++ F
Sbjct: 337 -DSVSGFLRLQRDF 349
>gi|307320695|ref|ZP_07600107.1| porin [Sinorhizobium meliloti AK83]
gi|306893622|gb|EFN24396.1| porin [Sinorhizobium meliloti AK83]
Length = 349
Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 39/314 (12%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNS---LAYDIPVKGNLEVNANA----GDVTGVAKLKL 107
K+GG + +N F+ +D+ + + +A + G +TG +
Sbjct: 58 KIGGYIRVQGDFGRDNVNHLTSFDDDGTSDWDMFSRAYISFDAKSDTEYGTLTGFFASEF 117
Query: 108 AVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTL 167
SD + + S + V+E + + G R G++ SW D+
Sbjct: 118 N-----------SDTDSASDGGGDSHIDVDEAYIELGGFRAGFFYSWWDK-----GLNGE 161
Query: 168 YNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTG 226
+ + S+ Y + G + G++ D L+ K +G+ + S ++G + + G
Sbjct: 162 TDSIGENTEFNSVRYTYDGGTFQVGVAVDELEGTSTKPNGVGVEGIVSASLGGVTFDLLG 221
Query: 227 GYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITI 286
YD AIRA +S+ GT +WASG N+Y+ S+++V A Y+F+V+ + I
Sbjct: 222 SYDTEWEEGAIRALLSADAG-PGTFQVAGIWASGSNAYWHDSEWAVAASYRFNVSDKLAI 280
Query: 287 SGGGQYFGDINKTGK---------DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAI 337
+ G QY+G +N++ K D W G++A Y I+ GL + ++ + D
Sbjct: 281 TPGAQYWGGLNESDKLGGRFDNDADQWRVGLTADYDITEGLATRFAINYTDPSNAP---- 336
Query: 338 DKGVDLSVGLKKSF 351
V + L++ F
Sbjct: 337 -DSVSGFLRLQRDF 349
>gi|150395892|ref|YP_001326359.1| porin [Sinorhizobium medicae WSM419]
gi|150027407|gb|ABR59524.1| porin [Sinorhizobium medicae WSM419]
Length = 345
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 126/287 (43%), Gaps = 41/287 (14%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
++ +D+ + + +A + G +TG + D+ ++D S
Sbjct: 87 STSDWDMFSRAYIAFDAKSDTEYGTLTGFFAAEFNADN-------DTDE-------GDSL 132
Query: 134 LSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL 193
+ V+E + + G + G++ SW D+ + + + S++Y + G +AG+
Sbjct: 133 IDVDEAYIQLGGFKAGFFYSWWDK-----GLNGETDSLGNVTEFNSIAYIYDGGTFQAGI 187
Query: 194 STDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD 252
S D L+ K +G+ + S ++G + + G YD AIRA +S+ + GT
Sbjct: 188 SVDELEGTSTKANGVGVTGIVSASLGGVAFDLLGSYDTEWEEGAIRALLSADLG-PGTFQ 246
Query: 253 CGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKT-----GKDGWSAG 307
+WAS N+Y+ S+++V A Y+F+ I+ QY+G + + D W G
Sbjct: 247 IAGIWASDPNAYWADSEWTVAASYRFNATDKFAITPAAQYWGSLQDSNTSFGNDDQWRVG 306
Query: 308 ISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
I+ Y I+ GL + ++ + D D G + G L++ F
Sbjct: 307 ITTDYDITEGLATRFTINYTDP--------DAGDEYVSGFLRLQRDF 345
>gi|15964805|ref|NP_385158.1| outer membrane protein [Sinorhizobium meliloti 1021]
gi|307309695|ref|ZP_07589347.1| porin [Sinorhizobium meliloti BL225C]
gi|307320692|ref|ZP_07600104.1| porin [Sinorhizobium meliloti AK83]
gi|15073983|emb|CAC45624.1| Probable outer membrane protein [Sinorhizobium meliloti 1021]
gi|306893619|gb|EFN24393.1| porin [Sinorhizobium meliloti AK83]
gi|306899907|gb|EFN30530.1| porin [Sinorhizobium meliloti BL225C]
Length = 345
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 127/287 (44%), Gaps = 41/287 (14%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
++ +D+ + + ++A + G +TG + D+ ++D S
Sbjct: 87 STSDWDMFSRAYISIDAKSDTEYGTLTGFFAAEFNADN-------DTDE-------GDSL 132
Query: 134 LSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL 193
+ V+E + + G + G++ SW D+ + + + SL+Y + G +AG+
Sbjct: 133 IDVDEAYIQLGGFKAGFFYSWWDK-----GLNGETDSLGNVTEFNSLAYIYDGGTFQAGI 187
Query: 194 STDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD 252
S D L+ K +G+ + S +G + + G YD A+R +S+ + GTL
Sbjct: 188 SVDELEGTSTKANGVGVTGIVSATLGGVAFDLLGSYDTEWEEGAVRGLLSADLG-PGTLQ 246
Query: 253 CGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKT-----GKDGWSAG 307
+WAS N+Y+ S+++V A Y+F+ + I+ QY+G + + D W G
Sbjct: 247 VAGIWASNPNAYWADSEWTVAASYRFNASDKFAITPAAQYWGSLQDSNTSFGNDDQWRVG 306
Query: 308 ISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
I+ Y I+ GL + ++ + D D G + G L++ F
Sbjct: 307 ITTDYDITEGLATRFTINYTDP--------DDGDEYVSGFLRLQRDF 345
>gi|227821389|ref|YP_002825359.1| putative outer membrane protein y4fJ precursor [Sinorhizobium
fredii NGR234]
gi|227340388|gb|ACP24606.1| putative outer membrane protein y4fJ precursor [Sinorhizobium
fredii NGR234]
Length = 343
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 69/263 (26%), Positives = 126/263 (47%), Gaps = 31/263 (11%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
++ +D+ + + +A + G +TG + D+ +SD S
Sbjct: 84 STSDWDVFSRAYISFDAKSDTEYGTLTGFFAAEFNADN-------DSDE-------GDSL 129
Query: 134 LSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL 193
+ V+E + + G + G++ SW D+ + + S++Y + G +AG+
Sbjct: 130 IDVDEAYIQLGGLKAGFFYSWWDK-----GLNGETDSIGENTEFNSIAYLYDGGTFQAGI 184
Query: 194 STDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD 252
+ D L+ K +GI + S +G + + GG+D AIRA +S+ + GTL
Sbjct: 185 AVDELEAATTKANGVGIEGIVSATLGGVSFDLLGGFDTELEEGAIRALLSADLG-PGTLQ 243
Query: 253 CGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDIN------KTGKDGWSA 306
A+WAS N+Y+ S++SV A Y+F+ + I+ G QY+GD+N +G D W
Sbjct: 244 AAAIWASDPNAYWSDSEWSVAASYRFNATEKFAITPGAQYWGDLNDGAGGFDSGDDQWRV 303
Query: 307 GISAKYMISSGLEAQASVAFNDN 329
GI+A Y I+ GL ++ ++ + D
Sbjct: 304 GITADYQITEGLASRFTINYTDP 326
>gi|86360534|ref|YP_472422.1| porin outer membrane protein [Rhizobium etli CFN 42]
gi|86284636|gb|ABC93695.1| porin outer membrane protein [Rhizobium etli CFN 42]
Length = 338
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 81/299 (27%), Positives = 128/299 (42%), Gaps = 57/299 (19%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G+N + +G + A G +TGV L+ VD+ SD AL
Sbjct: 70 GDNIAGDSDVNFWTRGQVTFQAKNDTEYGTLTGVLTLRYNVDNA-------SDQEAL--- 119
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E + + G R+G SW D E + + S T +N S+ Y+
Sbjct: 120 -------LDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 163
Query: 184 HSFGLLKAGLSTDLLQKDGL------KQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
+ G AGLS D L++D G+ SY G I + + GYD T+ VA+
Sbjct: 164 YENGAFAAGLSVDELEEDYATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAV 223
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI- 296
R + + + GTL VWASG N YY++S++++ A Y + I+ G QYF +I
Sbjct: 224 RGIVYADIG-PGTLGIAGVWASGANYYYEESEWTIAAEYALKINDKWKITPGFQYFENIA 282
Query: 297 ------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L ++ SV ++D D+G D G +
Sbjct: 283 LEADGNGFTGGSAYTTGVTIDYQIVEDLRSKLSVQYHDE--------DEGDDEVFGFLR 333
>gi|16519734|ref|NP_443854.1| putative outer membrane porin protein [Sinorhizobium fredii NGR234]
gi|2496627|sp|P55448|Y4FJ_RHISN RecName: Full=Putative outer membrane protein y4fJ; Flags:
Precursor
gi|2182393|gb|AAB91666.1| putative outer membrane porin protein [Sinorhizobium fredii NGR234]
Length = 343
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 28/289 (9%)
Query: 69 HKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRA 124
+K G + +D + + +A + G +TG + D+ +SD
Sbjct: 77 NKRQGWGAQGTSDWDAFSRAYIAFSAKSDTELGTLTGFFASEFNADN-------DSD--- 126
Query: 125 LAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRH 184
V S ++++E + + G + G++ SW D+ + + + S++Y +
Sbjct: 127 ----VGDSLINLDEAYIQLGGFKAGFFYSWWDK-----GLNGETDSLANITEFNSIAYLY 177
Query: 185 SFGLLKAGLSTDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
G +AG++ + L+ K +G+ + S +G + + GGYD AIRA +S+
Sbjct: 178 EGGAFQAGVAINELEGATTKANGIGVQGIVSATVGGVSIDLLGGYDTEVEEGAIRALVSA 237
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINK-TGKD 302
+ G VWAS N Y+ S+++V Y+++ + + I+ G Y+GD + D
Sbjct: 238 ELG-PGVFQIAGVWASDPNVYFAASEWTVATSYRYNATEKLAITPGLHYWGDYGFVSDAD 296
Query: 303 GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
W G++ Y I+SGL ++ SV + + G + V V L++ F
Sbjct: 297 QWRGGLAVDYKITSGLASRVSVQYTSRDI--GADTEDFVSGFVRLQRDF 343
>gi|190895520|ref|YP_001985812.1| porin outer membrane protein [Rhizobium etli CIAT 652]
gi|190699465|gb|ACE93549.1| porin outer membrane protein [Rhizobium etli CIAT 652]
Length = 338
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 79/299 (26%), Positives = 127/299 (42%), Gaps = 57/299 (19%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G++ + +G + A G +TGV L+ D+ SD AL
Sbjct: 70 GDHISGDSDVNFWTRGQVTFQAKNDTEYGTLTGVMTLRYNADNA-------SDQEAL--- 119
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E + + G R+G SW D E + + S T +N S+ Y+
Sbjct: 120 -------LDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 163
Query: 184 HSFGLLKAGLSTDLLQKDGL------KQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
+ G AGLS D L++D G+ SY G I + + GYD T+ VA+
Sbjct: 164 YENGAFAAGLSVDELEEDYATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAV 223
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI- 296
R + + + GTL VWASG N YY++S++++ A Y + I+ G QYF +I
Sbjct: 224 RGIVYADIG-PGTLGIAGVWASGANYYYEESEWTIAAEYALKINDKWKITPGFQYFENIA 282
Query: 297 ------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L ++ SV ++D D+G D G +
Sbjct: 283 LEADGNGFTGGSAYTTGVTIDYQIVEDLRSKLSVQYHDE--------DEGDDEVFGFLR 333
>gi|116255576|ref|YP_771409.1| putative outer membrane porin protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115260224|emb|CAK03328.1| putative outer membrane porin protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 338
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 79/299 (26%), Positives = 125/299 (41%), Gaps = 57/299 (19%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G + +G + G +TGV L+ VD+ SD AL
Sbjct: 70 GEQISGDSDVNFWTRGQVTFQTKNDTEYGTLTGVITLRYNVDNA-------SDQEAL--- 119
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E L + G R G SW D E + + S T +N S+ Y+
Sbjct: 120 -------LDEGYLDIAGFRAGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 163
Query: 184 HSFGLLKAGLSTDLLQKDG------LKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
+ G AG+S D L++D G+ SY G I + + GYD T+ VA+
Sbjct: 164 YENGAFAAGISVDELEEDYDTKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAV 223
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI- 296
R + + + GTL VWASG N YY++S++++ A Y V +++ G QYF +I
Sbjct: 224 RGIVYADIG-PGTLGIAGVWASGANYYYEESEWTIAAEYALKVNDKWSVTPGFQYFENIA 282
Query: 297 ------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L ++ SV ++D D+G D G +
Sbjct: 283 LEADGNGFTGGSAYTTGVTIDYQIVEDLRSKLSVQYHDE--------DEGDDEVFGFLR 333
>gi|150395894|ref|YP_001326361.1| porin [Sinorhizobium medicae WSM419]
gi|150027409|gb|ABR59526.1| porin [Sinorhizobium medicae WSM419]
Length = 352
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 64/261 (24%), Positives = 122/261 (46%), Gaps = 30/261 (11%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
++ +D+ + L +A + G +TG + D+ +SD S
Sbjct: 94 STSDWDMFSRAYLSFDAKSDTEYGTLTGFFAAEFNADN-------DSD-------DGDSM 139
Query: 134 LSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL 193
+ V+E + + G + G++ SW D+ + + SL+Y + G +AGL
Sbjct: 140 IDVDEAYVQLGGLKAGFFYSWWDK-----GLNGETDSIGENTEFNSLAYIYDGGTFQAGL 194
Query: 194 STDLLQKDGLK-QVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD 252
+ D L+ K +G+ + S ++G + + GG+D AIRA +S+ GT
Sbjct: 195 AVDELEATTTKANGIGVEGIVSASLGGVSFDLLGGFDTEVEEGAIRALLSADAG-PGTFQ 253
Query: 253 CGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGK-----DGWSAG 307
+WAS N+Y+ S+++V A Y+F+V + I+ G QY+ +N+ G+ + W G
Sbjct: 254 LAGIWASDPNAYWADSEWTVAASYRFNVNEKFAITPGAQYWDALNRGGRFDASEEQWRVG 313
Query: 308 ISAKYMISSGLEAQASVAFND 328
++ Y I+ GL + ++ + D
Sbjct: 314 LTTDYDITEGLATRFAINYTD 334
>gi|327191118|gb|EGE58165.1| porin outer membrane protein [Rhizobium etli CNPAF512]
Length = 338
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 57/299 (19%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G++ + +G + A G +TGV L+ D+ SD AL
Sbjct: 70 GDHISGDSDVNFWTRGQVTFQAKNDTEYGTLTGVMTLRYNADNA-------SDQEAL--- 119
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E + + G R+G SW D E + + S T +N S+ Y+
Sbjct: 120 -------LDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 163
Query: 184 HSFGLLKAGLSTDLLQKDGL------KQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
+ G AGLS D L++D G+ SY G I + + GYD T+ VA+
Sbjct: 164 YENGAFAAGLSVDELEEDYATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAV 223
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI- 296
R + + + GTL VWASG N YY++S++++ A Y + +I+ G QYF +I
Sbjct: 224 RGIVYADIG-PGTLGIAGVWASGANYYYEESEWTIAAEYALKINDKWSITPGFQYFENIA 282
Query: 297 ------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L ++ SV ++D D+G D G +
Sbjct: 283 LEADGNGFTGGSAYTTGVTIDYRIVDDLRSKLSVQYHDE--------DEGDDEVFGFLR 333
>gi|241666671|ref|YP_002984755.1| porin [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240862128|gb|ACS59793.1| porin [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 338
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 78/299 (26%), Positives = 122/299 (40%), Gaps = 57/299 (19%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G D +G + G +TGV L+ DD SD AL
Sbjct: 70 GQQISGDSDVDFWTRGQVTFQTKNDTEYGTLTGVITLRYNADDA-------SDQEAL--- 119
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E L + G R G SW D E + + S T +N S+ Y+
Sbjct: 120 -------LDEGYLDIAGFRAGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 163
Query: 184 HSFGLLKAGLSTDLLQ------KDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
+ G AG+S D L+ G+ SY G I + + GYD T+ VA+
Sbjct: 164 YENGAFAAGISVDELEEVYATKPGDGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAV 223
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI- 296
R + + + GTL VWASG N YY++S++++ A Y + +++ G QYF +I
Sbjct: 224 RGIVYADIG-PGTLGIAGVWASGANYYYEESEWTIAAEYALKINDKWSVTPGFQYFENIA 282
Query: 297 ------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L ++ SV ++D D+G D G +
Sbjct: 283 LEADGNGFTGGSAYTTGVTIDYQIVEDLRSKLSVQYHDE--------DEGDDEVFGFLR 333
>gi|209546225|ref|YP_002278115.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209539082|gb|ACI59015.1| porin [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 338
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 77/299 (25%), Positives = 126/299 (42%), Gaps = 57/299 (19%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G+ + +G + A G +TGV L+ D+ SD AL
Sbjct: 70 GDQISGDSDVNFWTRGQVTFQAKNDTEYGTLTGVITLRYNADNA-------SDQEAL--- 119
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E + + G R+G SW D E + + S T +N S+ Y+
Sbjct: 120 -------LDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 163
Query: 184 HSFGLLKAGLSTDLLQKDG------LKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
+ G AG+S D L++D G+ SY G I + + GYD T+ VA+
Sbjct: 164 YESGAFAAGISVDELEEDYDTKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAV 223
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI- 296
R + + + GTL VWASG N YY++S++++ A Y + +++ G QYF +I
Sbjct: 224 RGIVYADIG-PGTLGIAGVWASGANYYYEESEWTIAAEYALKINDKWSVTPGFQYFENIA 282
Query: 297 ------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L + SV ++D D+G D G +
Sbjct: 283 LEADGNGFTGGSAYTTGVTIDYRIVDDLRTKLSVQYHDE--------DEGDDEVFGFLR 333
>gi|218661695|ref|ZP_03517625.1| putative outer membrane protein [Rhizobium etli IE4771]
Length = 206
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%)
Query: 146 ARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQK 200
R G + SW D E + + SP TL+N S+ Y++ AG+S D L+
Sbjct: 1 FRAGLFYSWWDDGLSGETDDIGSPVTLHN---------SIRYQYETDSFYAGISVDELED 51
Query: 201 -----DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGA 255
D +G+ G +T GYD A+RA + + GTL A
Sbjct: 52 GFYKTDEEPNNVGVAVGLGGKAGAFSYQITAGYDVDNEEGAVRAMGTVDIG-PGTLGLAA 110
Query: 256 VWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDIN-----KTGKDGWSAGISA 310
V+A+G +SYY K+++++ A Y + I+ G QY+ + D W G++
Sbjct: 111 VYATGPSSYYTKAEWAIAAEYAIKATDKLKITPGVQYYSNYGIDGDDFADDDAWKVGLTV 170
Query: 311 KYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG---LKKSF 351
Y I A+ASV + D + D + G L++SF
Sbjct: 171 DYQIVDNFYAKASVQYLDP--------ENDDDSTSGYFRLQRSF 206
>gi|15888364|ref|NP_354045.1| outer membrane protein [Agrobacterium tumefaciens str. C58]
gi|15156040|gb|AAK86830.1| outer membrane protein [Agrobacterium tumefaciens str. C58]
Length = 365
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 73/331 (22%), Positives = 120/331 (36%), Gaps = 61/331 (18%)
Query: 60 LEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAE 119
L+ S R+ G ++ + ++ + V+ G + F E
Sbjct: 57 LKFSGYVRFQTNFGRDQSGTSDWNSFTRAQFNVDTRTDTELGALR-----------GFIE 105
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMS 179
A SS L + + + G R+G + SW D + + T L S
Sbjct: 106 FRADAGNGQSSSSGLEARQAFIELGGLRVGKFYSWWD--DDLSGETDL---LSSNTLFNS 160
Query: 180 LSYRHSFGLLKAGLSTDLLQKDGLK----------------------QVLGIGYMASYAI 217
+ Y + G AG+S D L+ G + +GI
Sbjct: 161 IRYTYDTGSFWAGISVDELEGTGSQFATITGAADPVTGLFPLSQEPDNNVGITAGVGGKF 220
Query: 218 GKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYK 277
G + G YD AIRA + + + GTL VWASG N+YY S+++V A Y
Sbjct: 221 GAATLQLIGSYDVDQEEGAIRAMVFADIG-PGTLGLAGVWASGPNAYYALSEWTVAAEYA 279
Query: 278 FDVAKSITISGGGQYFGDI-----------------NKTGKDGWSAGISAKYMISSGLEA 320
+TI+ QY G++ + + +D W+AG + Y I+ GL
Sbjct: 280 IKATDRLTITPAVQYLGNVGDKITVVNTGATAIVSNDWSNRDAWTAGATIDYKITDGLST 339
Query: 321 QASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
+ + + D + D V V L++ F
Sbjct: 340 KITANYYDEDGQ-----DDQVTGFVRLQRDF 365
>gi|15888362|ref|NP_354043.1| outer membrane protein [Agrobacterium tumefaciens str. C58]
gi|15156038|gb|AAK86828.1| outer membrane protein [Agrobacterium tumefaciens str. C58]
Length = 369
Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 128/332 (38%), Gaps = 73/332 (21%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G ++ +D + EV+ G + G L+ D+ S +
Sbjct: 64 RFQTDFGRDKSGVSDWDSFTRAQFEVDTRTDTELGALRGFIGLRGNADNGSSSSSS---- 119
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSY 182
+ V++ + + G ++G + SW D+ + + S+ Y
Sbjct: 120 -----------VFVDQAFIELGGLKVGKFYSWWDD-----GLSGESDVLSTNALFNSIRY 163
Query: 183 RHSFGLLKAGLSTDLLQKDG---------------------LKQVLGIGYMASYAIGKIR 221
+ G AG+S D L+ G L +GI +G
Sbjct: 164 TYDAGSFWAGVSVDELEGTGSQFATITGPANGLGLFPLSQELDNNVGIALGLGAKLGAAS 223
Query: 222 STVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVA 281
+ GGYD AIR ++ + GTL VWASG N+YY +S+++V A Y
Sbjct: 224 LQLIGGYDIDQEEGAIRLIATADLG-PGTLGLAGVWASGANAYYAESEWAVAAEYAIKAT 282
Query: 282 KSITISGGGQYFGDI----------------------NKTGKDGWSAGISAKYMISSGLE 319
+TI+ GGQYFG++ + + +D W AG++ Y I+SGL
Sbjct: 283 DKLTITPGGQYFGNVADRIALTNAAGVPTGASAIITNDWSNRDAWQAGVTIDYKITSGLS 342
Query: 320 AQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
+ +V + D + D+ V L++SF
Sbjct: 343 TKVAVNYYDEDNR-----DEQWKGFVRLQRSF 369
>gi|15890300|ref|NP_355972.1| outer membrane protein [Agrobacterium tumefaciens str. C58]
gi|15158501|gb|AAK88757.1| outer membrane protein [Agrobacterium tumefaciens str. C58]
Length = 355
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 62/285 (21%), Positives = 108/285 (37%), Gaps = 34/285 (11%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G ++ +D + EV+ G + G + D + S
Sbjct: 64 RFQTDFGRDKAGKSDWDSFTRAQFEVDTRTDTELGVLRGFIGFQGNADSGSAAASTTS-- 121
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSY 182
+ S + V++ + + G ++G + SW D+ ++ K S+ Y
Sbjct: 122 ---GSSDKGSAVFVDQAFIELAGLKVGKFTSWWDD-----GLGGETDELASNSKFNSIRY 173
Query: 183 RHSFGLLKAGLSTDLLQK-------------DGLKQVLGIGYMASYAIGKIRSTVTGGYD 229
+ G AG+S D L+ +G+ + + GGYD
Sbjct: 174 TYDAGSFWAGVSVDELEGVSVSYNKVNYDKNGNTSNNVGVAAGVGAKFDSVSFALIGGYD 233
Query: 230 AGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGG 289
N A+R + V GTL VWASG N+YY+ S+++V A Y + I+ G
Sbjct: 234 TDRENGAVRLIAEAGVG-PGTLGLAGVWASGANAYYNVSEWAVAASYAIKATDKLKITPG 292
Query: 290 GQYFGDI------NKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
QY+ N + D W AG++ Y I+ G + + + D
Sbjct: 293 VQYYSGYGLASWDNFSNNDAWKAGLTVDYKITDGFSTRLTANYLD 337
>gi|332715512|ref|YP_004442978.1| Outer membrane protein [Agrobacterium sp. H13-3]
gi|325062197|gb|ADY65887.1| Outer membrane protein [Agrobacterium sp. H13-3]
Length = 351
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 30/281 (10%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G ++ +D + EV+ G + G L+ D + S
Sbjct: 64 RFQTDFGRDKAGKSDWDAFTRAQFEVDTRTDTELGALRGFIGLRGDADTGSAAASTTS-- 121
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSY 182
+ S + V + + + G ++G + SW D+ + +D S+ Y
Sbjct: 122 ---GSSDKGSAVFVHQAFIEIAGLKVGKFLSWWDD-----GLSGETDDVATNALFNSVRY 173
Query: 183 RHSFGLLKAGLSTDLLQK---------DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTN 233
+ G AG+S D L+ + +G+ A I + + GGYD
Sbjct: 174 TYEAGSFWAGVSVDELEGIAVGTFNKNNNTSNNVGVVVGAGAKIDSVSLQLIGGYDTDRE 233
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYF 293
N ++R ++ V GT VWASG N+YY+ S+++V A Y + + I+ G QY+
Sbjct: 234 NGSVRLIATAGVG-PGTFGLSGVWASGANAYYNASEWAVAAEYAINATDKLKITPGFQYY 292
Query: 294 GDIN------KTGKDGWSAGISAKYMISSGLEAQASVAFND 328
+ D W AG++ Y I+ GL A+ + + D
Sbjct: 293 SGYGLVSFDKFSNNDAWKAGLTVDYKITDGLSAKVAANYLD 333
>gi|325292402|ref|YP_004278266.1| outer membrane protein A2 precursor [Agrobacterium sp. H13-3]
gi|325060255|gb|ADY63946.1| outer membrane protein A2 precursor [Agrobacterium sp. H13-3]
Length = 348
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 69/310 (22%), Positives = 124/310 (40%), Gaps = 50/310 (16%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALA 126
R+ G N+ + ++ + ++ D L +R A
Sbjct: 64 RFQTDFGRNQSGTSDWNSFTRAQFNIDTRT-------------DTELGALRGYIGLRGQA 110
Query: 127 FTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSF 186
++V++ + + G ++GY +W D + + T + + + +L Y +
Sbjct: 111 NNDSDRGVNVDQAFIELGGLKVGYMYTWWD--DDLSGETDILSS--NSTRSNALRYTYDA 166
Query: 187 GLLKAGLSTDLLQK--DG-------------LKQVLGIGYMASYAIGKIRSTVTGGYDAG 231
G AG+S + L DG +G+ + G + + + G YD
Sbjct: 167 GSFYAGISVEELDSVRDGNSNLGVAKGGVFEGPNNVGVSGIIGAKFGAVSANLLGSYDTD 226
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQ 291
N AIRA +++ + GT VWASG N YY++S+++V A Y +TI+ G Q
Sbjct: 227 QENGAIRAILTADIG-PGTFGLSGVWASGANYYYEESEWAVAAEYAIKATDKLTITPGAQ 285
Query: 292 YFGDINK-------TGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLS 344
Y G I+ D W AG++ Y I+ GL+A+ + + D G D
Sbjct: 286 YLGTIDIAPDGDFTGDNDAWRAGLTVDYKITQGLDAKIAANYQDVDGPTG-------DSW 338
Query: 345 VG---LKKSF 351
G L+++F
Sbjct: 339 TGFVRLQRTF 348
>gi|325292401|ref|YP_004278265.1| outer membrane protein A2 precursor [Agrobacterium sp. H13-3]
gi|325060254|gb|ADY63945.1| outer membrane protein A2 precursor [Agrobacterium sp. H13-3]
Length = 355
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 68/314 (21%), Positives = 127/314 (40%), Gaps = 51/314 (16%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G N+ + +D + ++ G + G L+ D+
Sbjct: 64 RFQTDFGRNKSGTSDWDSFTRAQFNIDTRTDTELGALRGYIGLRGQADN----------- 112
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSY 182
+ + V++ + + G ++GYY +W D + + + + ++ ++ Y
Sbjct: 113 ------DSNRGVVVDQAFIELGGLKVGYYYNWWD--DGLSGEVDVLSS--NQTRLNAVRY 162
Query: 183 RHSFGLLKAGLSTDLLQKD----------------GLKQVLGIGYMASYAIGKIRSTVTG 226
+ G G++ + L+ +GI + G + + + G
Sbjct: 163 TYDAGSFYVGVAVEELEAARGGSNISDDFLKGGSFERANNVGIDAIIGAKFGAVSANLLG 222
Query: 227 GYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITI 286
GYD A+RA +++ + GTL VWASG N YY++S+++V A Y +TI
Sbjct: 223 GYDTDAEEGAVRAIVTADIG-PGTLGLSGVWASGANRYYEESEWTVAAEYAIKATDKLTI 281
Query: 287 SGGGQYFGDIN-------KTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
+ G QYF I+ +D W AG++ Y I+ GL SV + D +GV
Sbjct: 282 TPGFQYFNTIDLGANNDWVGDRDAWKAGVAVGYKITQGLSTLVSVNYQDVDGTEGVDTGA 341
Query: 340 GVDLS--VGLKKSF 351
G V L+++F
Sbjct: 342 GDSWVGFVRLQRTF 355
>gi|222148069|ref|YP_002549026.1| outer membrane protein [Agrobacterium vitis S4]
gi|221735057|gb|ACM36020.1| outer membrane protein [Agrobacterium vitis S4]
Length = 348
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 63/302 (20%), Positives = 130/302 (43%), Gaps = 53/302 (17%)
Query: 74 NNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
++ + ++ +G + +A D + + VR A S
Sbjct: 76 SSWSGNRDWNARTRGLVTFDAKN-------------DSEIGTIGSTITVRTWADENGGS- 121
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
L ++E +++ G ++G + ++ D E + + S +++ S++Y +
Sbjct: 122 LELDEAFITVAGFQIGEFYNYFDTGLSGETDDLGS-----------NRLNSIAYNYKSDT 170
Query: 189 LKAGLSTDLL-------------QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNV 235
AG++ D L G + +GI + G + +T+ GG+DA N+
Sbjct: 171 FFAGIAVDELTGYYSRSRDLSQADAYGQNKRVGIEGQVGGSFGPVTATLLGGWDAVANDG 230
Query: 236 AIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYF-- 293
A+R ++ + G L ++++G ++YYDK++++V A Y + +T++ G QYF
Sbjct: 231 AVRLLATANLG-PGVLGVAGLYSTGVSAYYDKAEWTVAAEYAAKITDKLTLTPGVQYFAN 289
Query: 294 ----GDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
G + TG+D W G++ Y ++ GL + S + D+ D V L++
Sbjct: 290 TQVDGSGDYTGRDIWKGGLTLDYKLAEGLTTKVSAQYQDHAWSNS---DDVWSGFVRLQR 346
Query: 350 SF 351
SF
Sbjct: 347 SF 348
>gi|218513640|ref|ZP_03510480.1| porin outer membrane protein [Rhizobium etli 8C-3]
Length = 183
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 174 LDKMMSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGY 228
+ SL Y++ AG+S D L+ +G+ G +T GY
Sbjct: 1 VTLHNSLRYQYETDAFYAGISVDELEDSPFYNGETANNVGVAIGLGGKAGAFSYQITAGY 60
Query: 229 DAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISG 288
D A+RA + V GTL V+AS N+YY+K+++++ A Y + I+
Sbjct: 61 DTDNEEGAVRAMGTVAVG-PGTLGLAVVYASNPNAYYNKAEWAIAAEYAIKATDKLKITP 119
Query: 289 GGQYFGDINKTGK------DGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVD 342
QY+ + T D W AG++ Y I L A+ SV + D D D
Sbjct: 120 AVQYYNNYGVTAGEFNDDVDAWKAGVTIDYQIVDNLSAKVSVQYLDP--------DNAED 171
Query: 343 LSVG---LKKSF 351
++ G L+++F
Sbjct: 172 VTSGYFRLQRAF 183
>gi|218682488|ref|ZP_03530089.1| porin [Rhizobium etli CIAT 894]
Length = 250
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 41/214 (19%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+ +D
Sbjct: 64 RFQVNVGEDVGGDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQ 116
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
A+ ++ L + G R G + SW D E + + S TL+N
Sbjct: 117 DAV----------LDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN-------- 158
Query: 178 MSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMASYAIGKIRSTVTGGYDAGT 232
S+ Y++ G AGLS D L+ +G+ + G VTGG+D
Sbjct: 159 -SIRYQYESGTFYAGLSVDELEDGVYKTGEEANNVGVAFGVGGTAGAFSYQVTGGWDFDN 217
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASGDNSYYD 266
+ AIRA + + GTL V++SG NSYY
Sbjct: 218 EDGAIRAMGTVDIG-PGTLGLAGVYSSGPNSYYS 250
>gi|222148068|ref|YP_002549025.1| outer membrane protein [Agrobacterium vitis S4]
gi|221735056|gb|ACM36019.1| outer membrane protein [Agrobacterium vitis S4]
Length = 344
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 59/301 (19%), Positives = 121/301 (40%), Gaps = 55/301 (18%)
Query: 72 NGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPS 131
+ N+ + ++ +G + +A D L + VR A
Sbjct: 71 SNNSLGDDRNWNARTRGLVTFDAKN-------------DSELGTIGSTITVRTWADENGG 117
Query: 132 SKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSF 186
S L ++E +++ G ++G + + D E + + S +++ S++Y++
Sbjct: 118 S-LELDEAFITVAGFQVGSFYNPWDSDLSGETDDIGS-----------NRLNSIAYKYKA 165
Query: 187 GLLKAGLSTDLL------------QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNN 234
S D L +G+ G + + + G +D T+N
Sbjct: 166 DNFFVYGSVDELTGYYSRTPAAGSDPYSKNNRVGLEAQIGTTYGPVTANLLGSWDFATSN 225
Query: 235 VAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFG 294
A+R ++ V G A++++G ++YYD SK++V A Y + ++++ G QY+G
Sbjct: 226 GAVRGLATAEVG-PGEFGIAAIYSTGASTYYDLSKWTVAAQYAAKITDKLSLTPGVQYWG 284
Query: 295 ------DINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLK 348
D + G+D W AG++ Y ++ GL + S + D+ D D+ G
Sbjct: 285 ETQVDTDGDYFGRDIWRAGLTVDYKLAEGLTTKVSAQYQDH------DWDGNDDVWTGFV 338
Query: 349 K 349
+
Sbjct: 339 R 339
>gi|315122261|ref|YP_004062750.1| outer membrane protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495663|gb|ADR52262.1| outer membrane protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 344
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 131/347 (37%), Positives = 201/347 (57%), Gaps = 21/347 (6%)
Query: 1 MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60
M K +LG+ A+ ++SY+ESFA V K+++ ++ A G + H K+
Sbjct: 1 MKFKNIYLGSAAIIAVLSYTESFAVVH-KSTVKNHKNAHYCEKGYQKYLSDHCLKISKYY 59
Query: 61 EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQ 116
E S+ + Y K S Y P+K + V+ G + G KLK+ D+ +++
Sbjct: 60 EPSVSSLYVK------GASPQYSYPLKTGVAVDYKTQTRLGKLQGSLKLKVYTPDLSTLR 113
Query: 117 FAESDVRAL--AFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGL 174
++D + T + ++++EL L+++G + GYYK WS+EV+ VY L ND +
Sbjct: 114 RVKNDSNMFTPSGTFENVNITLDELYLNLRGVQAGYYKPWSNEVSSVYDMAALNNDEANI 173
Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNN 234
SLSY+ SFGL+KAGLS DLLQ+ K+ LGIGYM SY GK++STVTGGYD +
Sbjct: 174 T---SLSYQRSFGLVKAGLSADLLQQAAKKRGLGIGYMVSYVFGKLKSTVTGGYDTYNKH 230
Query: 235 VAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFG 294
+A+RAN+S+ +S + D GA+WA+G NSYYD+S+ S+FAGYK +V +I+IS G QYF
Sbjct: 231 LAVRANVSARLSNCSSFDFGALWANGKNSYYDQSQSSIFAGYKVNVRDNISISPGAQYFW 290
Query: 295 DINK----TGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAI 337
+ +K T ++ W+AG+ Y S + S + D+ KGV +
Sbjct: 291 NKDKFTTNTKQNSWTAGVGVAYEFSKDTTVKLSTLY-DSRPNKGVNV 336
>gi|218678259|ref|ZP_03526156.1| porin [Rhizobium etli CIAT 894]
Length = 166
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 22/170 (12%)
Query: 193 LSTDLLQKDGL------KQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVS 246
+S D L+ D G+ SY G I + + GYD T+ VA+R + + +
Sbjct: 1 ISVDELEDDYATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAVRGIVYADIG 60
Query: 247 RAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI-------NKT 299
GTL VWASG N YY++S++++ A Y + +++ G QYF +I +
Sbjct: 61 -PGTLGIAGVWASGANYYYEESEWTIAAEYALKINDKWSVTPGFQYFENISLDADGNGFS 119
Query: 300 GKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
G ++ G++ Y I L + SV ++D D+G D G +
Sbjct: 120 GGSAYTTGVTIDYRIVDDLRTKLSVQYHDE--------DEGDDEVFGFLR 161
>gi|218506407|ref|ZP_03504285.1| porin outer membrane protein [Rhizobium etli Brasil 5]
Length = 148
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 37/175 (21%)
Query: 105 LKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVN 159
++ D+ + K ++ L + G R G + SW D E +
Sbjct: 1 MQFNADNA-----------------SAQKAQLDSAYLDIAGFRAGLFYSWWDDGLSGETD 43
Query: 160 PVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKD-----GLKQVLGIGYMAS 214
+ SP TL+N SL Y++ AG+S D L+ +G+
Sbjct: 44 DIGSPVTLHN---------SLRYQYETDAFYAGISVDELEDSPFYNGETANNVGVAIGLG 94
Query: 215 YAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSK 269
G +T GYD A+RA + V GTL V+A+ N+YY+K++
Sbjct: 95 GKAGAFSYQITAGYDTDNEEGAVRAMGTVAVG-PGTLGLAVVYATAPNAYYNKAE 148
>gi|218506070|ref|ZP_03503948.1| porin outer membrane protein [Rhizobium etli Brasil 5]
Length = 182
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 40/167 (23%)
Query: 67 RYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDV 122
R+ G + +D +G ++ A + G +TGV ++ D+ +D
Sbjct: 42 RFQVNVGEDVGGDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNADNA-------TDQ 94
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKM 177
A ++ L + G R G + SW D E + + SP TL+N
Sbjct: 95 EA----------KLDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSPVTLHN-------- 136
Query: 178 MSLSYRHSFGLLKAGLSTDLLQ-----KDGLKQVLGIGYMASYAIGK 219
S+ Y++ G AG+S D L+ +G+ G
Sbjct: 137 -SIRYQYETGDFYAGISVDDLEDGPFYDGETPNNVGVAVRLGGKAGA 182
>gi|521101|gb|AAA20488.1| outer membrane protein IIIA [Rhizobium leguminosarum bv. viciae
248]
Length = 318
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 36/148 (24%)
Query: 78 NSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK 133
N +D +G ++ A + G +TGV ++ D+ SD A+
Sbjct: 77 NDSDWDAVTRGQVQFTAKSDTEYGPLTGVIVMQFNPDNA-------SDQDAI-------- 121
Query: 134 LSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++ L + G R G + SW D E + + S TL+N S+ Y++ G
Sbjct: 122 --LDSAYLDVAGFRAGLFYSWWDDGLSGETDDIGSVVTLHN---------SIRYQYESGT 170
Query: 189 LKAGLSTDLLQKDGLKQVLGIGYMASYA 216
AGLS D L+ DG+ Q +
Sbjct: 171 FYAGLSVDELE-DGVYQGTFTPGVIPGT 197
>gi|218670373|ref|ZP_03520044.1| putative outer membrane protein [Rhizobium etli GR56]
Length = 173
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 36/143 (25%)
Query: 55 KVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVD 110
K+ G + + LNG ++ N +D +G ++ A + G +TGV ++ D
Sbjct: 58 KINGYVRFQVDVGDQPLNG-SDSNDSDWDARTRGQVQFTAKSDTEYGPLTGVIVMQFNAD 116
Query: 111 DVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPT 165
+ SD A ++ + + G R G + SW D E + + SP
Sbjct: 117 NA-------SDQSA----------KLDSAYIDIAGFRAGLFYSWWDDGLSGETDDIGSPV 159
Query: 166 TLYNDARGLDKMMSLSYRHSFGL 188
TL+N SL Y++
Sbjct: 160 TLHN---------SLRYQYETDA 173
>gi|218659195|ref|ZP_03515125.1| porin outer membrane protein [Rhizobium etli IE4771]
Length = 160
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 49/174 (28%)
Query: 199 QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVW- 257
+ + G+ SY G + A PV + + +
Sbjct: 8 KPGEGPKHFGVAGQVSYKAGAV------------------ALTCLPVMTPTPVKLLSRYR 49
Query: 258 -----ASGD----------NSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDI------ 296
A + +Y+K K+++ A Y + +++ G QYF +I
Sbjct: 50 LCRHPAGDPRHRRGLGKRRHYFYEKFKWTIAAEYALKINDKWSVTPGFQYFENIALEADG 109
Query: 297 -NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
TG ++ G++ Y I L ++ SV ++D D+G D G +
Sbjct: 110 NGFTGGSAYTTGVTIDYQIVEDLRSKLSVQYHDE--------DEGDDEVFGFLR 155
>gi|227821391|ref|YP_002825361.1| hypothetical protein NGR_c08170 [Sinorhizobium fredii NGR234]
gi|227340390|gb|ACP24608.1| hypothetical protein NGR_c08170 [Sinorhizobium fredii NGR234]
Length = 203
Score = 96.0 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 27/149 (18%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G ++ +D +G L +A G +T + L++ D F
Sbjct: 70 GPDKSGVSDWDAFTRGFLAFDAKNDTEYGALTSLIALEIDGDAQEGGNF----------- 118
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL 188
++E + + G ++G + SW D+ + + S++Y + G
Sbjct: 119 ------KLDEAYIQLGGFKVGRFYSWWDK-----GLNGETDSIGENTRFNSIAYLYDGGA 167
Query: 189 LKAGLSTDLLQK-DGLKQVLGIGYMASYA 216
+AG++ D L+ LG+ + S
Sbjct: 168 FQAGVAVDELEGLTTRNNGLGVEGIVSAT 196
>gi|218671134|ref|ZP_03520805.1| putative outer membrane protein [Rhizobium etli GR56]
Length = 82
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 272 VFAGYKFDVAKSITISGGGQYFGDI-----NKTGKDGWSAGISAKYMISSGLEAQASVAF 326
+ A Y + I+ G QY+ + + + D W G++ Y I A+ASV +
Sbjct: 1 IAAEYAIKATDKLKITPGVQYYSNYYVAGDDFSDDDAWKVGLTVDYQIVDNFYAKASVQY 60
Query: 327 NDNFVKKGVAIDKGVDLSVGL 347
D + D + L
Sbjct: 61 LDP--------ENDDDSTSWL 73
>gi|110633293|ref|YP_673501.1| porin [Mesorhizobium sp. BNC1]
gi|110284277|gb|ABG62336.1| porin [Chelativorans sp. BNC1]
Length = 401
Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 47/284 (16%)
Query: 82 YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE--SDVRALAFTVPSSKLS 135
+ + + ++A + G + G +L+ +FA ++ AL+ + +
Sbjct: 105 WSKLARATVTLDARSETEYGTLGGFIELRFESRGGTVTEFAGGVNEEEALSNGILDTTSR 164
Query: 136 VEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGL-LKAGLS 194
V++ +S+ G +G + D + + D G D+ + Y G A ++
Sbjct: 165 VQQAIISLGGLSMGVADTLYD-----AGLSAEF-DRGGGDRAHFIRYTFDGGSGFTAAVA 218
Query: 195 TDLLQK--DGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD 252
+ + + D V+G + G + G YDA A++A + ++ A L+
Sbjct: 219 LEEVDRGHDWTPNVVG---KVGFTQGWGGVNLWGAYDATAGEFALKAIAKADLTEAVWLE 275
Query: 253 CGAVWASGDN---------------------SYYDKSKYSVFAGYKFDVAKSITISGGGQ 291
+ SG N Y + +++S + S G Q
Sbjct: 276 AIGTYESGINFYSVDPDNSTGGDFFGGTALAGYREGAQWSAGGLIGYKFNPRFKASIGAQ 335
Query: 292 YFGDINKTGK--------DGWSAGISAKYMISSGLEAQASVAFN 327
YF ++ D AG + Y I A+ ++ +
Sbjct: 336 YFNEVGHEAGTALYGGEVDALRAGATIDYAIVENFNAKLAINYT 379
>gi|218670180|ref|ZP_03519851.1| porin outer membrane protein [Rhizobium etli GR56]
Length = 224
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 35/124 (28%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAESDVRALAFT 128
G+N + +G + A G +TGV L+ VD+ SD AL
Sbjct: 127 GDNIAGDSDVNFWTRGQVTFQAKNDTEFGTLTGVMTLRYNVDNA-------SDQEAL--- 176
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSD-----EVNPVYSPTTLYNDARGLDKMMSLSYR 183
++E + + G R+G SW D E + + S T +N S+ Y+
Sbjct: 177 -------LDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNETTHN---------SIRYQ 220
Query: 184 HSFG 187
+ G
Sbjct: 221 YENG 224
>gi|218672067|ref|ZP_03521736.1| porin outer membrane protein [Rhizobium etli GR56]
Length = 76
Score = 70.6 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 278 FDVAKSITISGGGQYFGDI-------NKTGKDGWSAGISAKYMISSGLEAQASVAFNDNF 330
+ I+ G QYF +I TG ++ G++ Y I L ++ SV ++D
Sbjct: 1 MKINDKWKITPGFQYFENIALEADGNGFTGGSAYTTGVTIDYQIVEDLRSKLSVQYHDE- 59
Query: 331 VKKGVAIDKGVDLSVGLKK 349
D+G D G +
Sbjct: 60 -------DEGDDEVFGFLR 71
>gi|163760610|ref|ZP_02167691.1| porin [Hoeflea phototrophica DFL-43]
gi|162282225|gb|EDQ32515.1| porin [Hoeflea phototrophica DFL-43]
Length = 372
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 31/244 (12%)
Query: 114 SMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLG----YYKSWSDEVNPVYSPTTLYN 169
++F A+ ++ SV + + G R+G ++ +W+ PV + +Y+
Sbjct: 110 ELRFQWDTNTAVGGYSNDNEFSVNFAWIQLGGLRIGKDESFFTTWTGYAGPVINDGLIYD 169
Query: 170 DARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQ--------VLGIGYMASYAIGKIR 221
G +SY ++ G +AG++ + + Y G
Sbjct: 170 P--GPFDTNLVSYTYNGGAFRAGIALEQGDDSNTAAPAWGIDDYAPHVVVGLGYTAGMFD 227
Query: 222 STVTGGYDAGTN------------NVAIRANISSPVSRAGTLDC-----GAVWASGDNSY 264
+ G+D + + IRA+++ + + + + N
Sbjct: 228 LSAVVGFDTRDDLATLAQPIRGGWSGKIRADVTVNDQLSLMAMLHYGENSSAYTTWANGA 287
Query: 265 YDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASV 324
++V AG + T + GQ+ + D +S + Y + GL +
Sbjct: 288 VTDETFAVTAGGSYKFTDKATFNIQGQWRENNVVGNDDAFSVAANVAYQVVPGLIVTPEI 347
Query: 325 AFND 328
A+ D
Sbjct: 348 AWRD 351
>gi|218510487|ref|ZP_03508365.1| porin [Rhizobium etli Brasil 5]
Length = 67
Score = 60.9 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 286 ISGGGQYFGDINKTGKD------GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
I+ QY+ + T + AG++ Y I L A+ SV + D D
Sbjct: 1 ITPAVQYYDNYGVTAGEFNDDVSARKAGVTIDYQIVDNLSAKVSVQYLDP--------DN 52
Query: 340 GVDLSVG---LKKSF 351
D++ G L+++F
Sbjct: 53 AEDVTSGYFRLQRAF 67
>gi|213133531|gb|ACJ43418.1| Omp2a [Brucella pinnipedialis]
gi|213133535|gb|ACJ43420.1| Omp2a [Brucella pinnipedialis]
Length = 367
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++SG N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSGATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|213133539|gb|ACJ43422.1| Omp2a [Brucella pinnipedialis]
Length = 367
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++SG N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSGATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|222085378|ref|YP_002543908.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221722826|gb|ACM25982.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 353
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 41/279 (14%)
Query: 84 IPVKGNLEVNANAGDVTGVA---KLKLAVDDVLSMQFA----ESDVRALAFTVPSSKLSV 136
+ +G N +V G + +L V+ ++ E+ VR S+ ++
Sbjct: 63 VRTEGQWYDAYNPNNVRGTLWHTRAELNVNTATDTEYGPLKTETIVRWDWQEGASTNTNL 122
Query: 137 EELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDA-RGLDKMMSLSYRHSFG-LLKAGLS 194
+S+ G +G S ++ + G ++ L+Y + G A +S
Sbjct: 123 LWAYISLGGFTVGKTDSQFNQFTGYAGDVINDDVVYDGPYELNQLTYNYDAGNGFTAVIS 182
Query: 195 TDLL-----------QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
+ + + Y G V GGYD+ A++A + +
Sbjct: 183 LEDSNSGVGATGVNGEDSSDHYAPDVVAGVGYKAGAWAFKVVGGYDSIVEEGAVKARVDA 242
Query: 244 PVSRAGTLDCGAVWASGDNSY--YDKS------------KYSVFAGYKFDVAKSITISGG 289
G + + N Y S ++V+ G V + + +
Sbjct: 243 DFGAFSAFVMGG-YNTDGNKLNKYAGSNGGGDAADIGWGDWAVWGGVGVPVNEKLKWNLQ 301
Query: 290 GQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
Y T ++A + K+ L + V++ +
Sbjct: 302 LAY------TDSKIFAATTNLKFNPVKNLLIEPEVSYTN 334
>gi|213133527|gb|ACJ43416.1| Omp2a [Brucella pinnipedialis]
Length = 367
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++SG N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSGATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|163760612|ref|ZP_02167693.1| Omp2b porin (major cell envelope protein in Brucella abortus)
[Hoeflea phototrophica DFL-43]
gi|162282227|gb|EDQ32517.1| Omp2b porin (major cell envelope protein in Brucella abortus)
[Hoeflea phototrophica DFL-43]
Length = 366
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 37/245 (15%)
Query: 135 SVEELSLSMKGARLG----YYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLK 190
S+ + + G R+G + +W + T + G +SY + G +
Sbjct: 131 SLNFAWIQLGGLRVGKDETLFTTW---TGYAGAVIT--DGTYGPFDTNLISYTYDGGAFR 185
Query: 191 AGLSTDLLQKDGLKQVLGIG-------YMASYAIGKIRSTVTGGYDAGTN---------N 234
AG+S + GI Y G + + GYD + +
Sbjct: 186 AGISLEQGDDSNSATAWGIDDYMPHVVAGVGYNAGMVDLSAVLGYDTRDDFGGVARGGWS 245
Query: 235 VAIRANISS-PVSRAGTLDCGAVWASG------DNSYYDKSKYSVFAGYKFDVAKSITIS 287
+RA+++ + SG N+ + S+ AG + + + +
Sbjct: 246 GKVRADVTVNDQLSVFAMAMYGESTSGYTTWDRTNAAAGEESLSIIAGGSYRASDKLRFN 305
Query: 288 GGGQYFGDINKTG-KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG 346
GQ+ + DG+ + Y + G + + D G V
Sbjct: 306 IQGQWMESVAAENLSDGFQVAGNLNYTVVPGFVVTPELYYTDAGDAAGGQF----GAMVR 361
Query: 347 LKKSF 351
++SF
Sbjct: 362 FQRSF 366
>gi|306845240|ref|ZP_07477816.1| Outer membrane protein IIIA precursor [Brucella sp. BO1]
gi|206596722|emb|CAQ68391.1| outer membrane protein 2a [Brucella sp. BO1]
gi|306274399|gb|EFM56206.1| Outer membrane protein IIIA precursor [Brucella sp. BO1]
Length = 367
Score = 57.1 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 102/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVAA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|23501524|ref|NP_697651.1| porin Omp2a [Brucella suis 1330]
gi|81671980|sp|Q45429|OMP2A_BRUSU RecName: Full=Porin omp2a; Flags: Precursor
gi|841493|gb|AAA67798.1| putative porin [Brucella suis 1330]
gi|23347433|gb|AAN29566.1| porin Omp2a [Brucella suis 1330]
gi|155369805|emb|CAM98689.1| outer membrane protein 2a [Brucella suis]
Length = 367
Score = 57.1 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 105/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRS-----TVTG--G 227
+ ++Y + G + + + + I + +G ++ ++ G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGAVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
+T ++ D ++A Y + G V++ K VA D
Sbjct: 304 VTF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|256060769|ref|ZP_05450931.1| Outer membrane protein IIIA precursor [Brucella neotomae 5K33]
gi|261324758|ref|ZP_05963955.1| porin family protein [Brucella neotomae 5K33]
gi|75346698|sp|Q45325|OMP2A_BRUNE RecName: Full=Porin omp2a; Flags: Precursor
gi|841485|gb|AAA67792.1| putative porin [Brucella neotomae]
gi|261300738|gb|EEY04235.1| porin family protein [Brucella neotomae 5K33]
Length = 367
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 102/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVADGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFPAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|222081873|ref|YP_002541238.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221726552|gb|ACM29641.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 353
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/279 (15%), Positives = 86/279 (30%), Gaps = 41/279 (14%)
Query: 84 IPVKGNLEVNANAGDVTGVA-------KLKLAVDDVLSMQFAESDVRALAFTVPSSKLSV 136
+ +G N +V G +L+ A D +++R S+ +
Sbjct: 63 VRTEGQWYDAYNPNNVRGTLWHTRAELQLQTATDTEYGPLKTNTELRWDWQEGASTSTNF 122
Query: 137 EELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDA-RGLDKMMSLSYRHSFG-LLKAGLS 194
S+S+ G +G S + + G ++ ++Y + G A +S
Sbjct: 123 LHGSISLGGFTIGKEDSQFNVFTGYAGDVINDDVVYDGPYELNQITYNYDAGNGFTAVIS 182
Query: 195 TDLL-----------QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
+ + + Y G V GGYD+ AI+A + +
Sbjct: 183 LEDTNSGTGATGANGEDSSDHYAPDVVGGLGYKAGAWGFKVVGGYDSIVEEGAIKARVDA 242
Query: 244 PVSRAGTLDCGAVWAS---------GDNSYYDKS-----KYSVFAGYKFDVAKSITISGG 289
G W + G N D S ++V+ G + + + +
Sbjct: 243 DFGVFSAFVMGG-WNTDGDKLNKYAGANGGGDASGIGWGDWAVWGGASVPINEKLKWNFQ 301
Query: 290 GQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
Y T +SA + K+ L + V + +
Sbjct: 302 VAY------TDSKIFSATTNLKFNPVKNLLVEPEVTYTN 334
>gi|148559173|ref|YP_001258626.1| porin [Brucella ovis ATCC 25840]
gi|148370430|gb|ABQ60409.1| porin [Brucella ovis ATCC 25840]
Length = 391
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 101/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 88 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 147
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + + G
Sbjct: 148 YGDFSDDRDVADGSVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDIINDDVISAGS 207
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 208 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 267
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G K+ +
Sbjct: 268 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGLKYQATQK 327
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
++ D ++A Y + G V++ K VA D
Sbjct: 328 AAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDN 379
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 380 AWGGIVRFQRSF 391
>gi|225627142|ref|ZP_03785180.1| Outer membrane protein IIIA precursor [Brucella ceti str. Cudo]
gi|254701429|ref|ZP_05163257.1| Outer membrane protein IIIA precursor [Brucella suis bv. 5 str.
513]
gi|256369076|ref|YP_003106584.1| porin Omp2a [Brucella microti CCM 4915]
gi|261751968|ref|ZP_05995677.1| outer membrane protein 2a [Brucella suis bv. 5 str. 513]
gi|10198221|gb|AAG15260.1| omp2a [Brucella pinnipedialis]
gi|54695156|dbj|BAD67160.1| putative porin [Brucella sp. JM13/00]
gi|68144409|gb|AAY86153.1| Omp2a [Brucella pinnipedialis]
gi|115361667|gb|ABI95891.1| omp2a [Brucella sp. 02611]
gi|146189607|emb|CAM91980.1| outer membrane protein 2a [Brucella microti]
gi|146189609|emb|CAM91981.1| outer membrane protein 2a [Brucella microti CCM 4915]
gi|155369801|emb|CAM98687.1| outer membrane protein 2a [Brucella suis]
gi|189086067|emb|CAQ15872.1| outer membrane protein 2a [Brucella microti]
gi|189086069|emb|CAQ15873.1| outer membrane protein 2a [Brucella microti]
gi|189086071|emb|CAQ15874.1| outer membrane protein 2a [Brucella microti]
gi|189086079|emb|CAQ15878.1| outer membrane protein 2a [Brucella microti]
gi|213133515|gb|ACJ43410.1| Omp2a [Brucella pinnipedialis]
gi|225617977|gb|EEH15021.1| Outer membrane protein IIIA precursor [Brucella ceti str. Cudo]
gi|255999236|gb|ACU47635.1| porin Omp2a [Brucella microti CCM 4915]
gi|261741721|gb|EEY29647.1| outer membrane protein 2a [Brucella suis bv. 5 str. 513]
Length = 367
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 102/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|115361671|gb|ABI95893.1| omp2a [Brucella sp. F599]
Length = 365
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 102/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 62 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 121
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 122 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 181
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 182 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 241
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 242 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 301
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 302 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 353
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 354 AWGGIVRFQRSF 365
>gi|841481|gb|AAA67789.1| putative porin [Brucella melitensis]
gi|259048752|emb|CBE71337.1| outer membrane protein [Brucella melitensis]
Length = 367
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 103/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ ++ +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVPFQRSF 367
>gi|161618610|ref|YP_001592497.1| Outer membrane protein IIIA precursor [Brucella canis ATCC 23365]
gi|75346584|sp|Q45079|OMP2A_BRUCA RecName: Full=Porin omp2a; Flags: Precursor
gi|215275694|sp|A9MA14|OMP2A_BRUC2 RecName: Full=Porin omp2a; Flags: Precursor
gi|841477|gb|AAA67786.1| putative porin [Brucella canis]
gi|155369817|emb|CAM98695.1| outer membrane protein 2a [Brucella suis]
gi|161335421|gb|ABX61726.1| Outer membrane protein IIIA precursor [Brucella canis ATCC 23365]
Length = 367
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 104/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRS-----TVTG--G 227
+ ++Y + G + + + + I + +G ++ ++ G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGAVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDPVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|213133523|gb|ACJ43414.1| Omp2a [Brucella pinnipedialis]
Length = 367
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 94/286 (32%), Gaps = 33/286 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++SG N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSGATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
T ++ D ++A Y + G V++
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYT 341
>gi|222085193|ref|YP_002543723.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221722641|gb|ACM25797.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 363
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 32/224 (14%)
Query: 131 SSKLSVEELSLSMKGARLGYYKSWSD-EVNPVYSPTTLYNDARGLDKMMSLSYRHSFG-L 188
S+ + ++S+ G +G S + G ++ ++Y + G
Sbjct: 127 STTTKLIAANISLAGFTVGKLDSAYNLYAGYAGGVINDDVVYDGPYELNQITYNYDAGNG 186
Query: 189 LKAGLSTDLLQKDGLKQVLG-----------IGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
A +S + + + Y G V GGYD+ A+
Sbjct: 187 FTAVISLEDSNSGTGATGVNGEDSSDHYAPDVVAGLGYKAGNFGFKVVGGYDSIVEEGAV 246
Query: 238 RANISSPVSRAGTLDCGAVWASGD--NSYYDKS-----------KYSVFAGYKFDVAKSI 284
+A I G GD N Y + ++V+ G + +
Sbjct: 247 KARIDGDFGVFKAFLMGGWNTDGDKLNKYASSNGAGPAKGIGWGDWAVWGGVTVPINDKL 306
Query: 285 TISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
+ Y T ++A + K+ L+ V++ +
Sbjct: 307 QANAQVAY------TDSKIFAATANVKFNPVKNLQITPEVSYTN 344
>gi|68223319|gb|AAY86154.1| Omp2b [Brucella pinnipedialis]
Length = 380
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L V+ + G + +L+ S +
Sbjct: 77 RYDVKGGDDVYTGSDRKGWDKSARFALRVSTGSETELGTLGTYTQLRFNYTSNNSRHDGQ 136
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 137 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 196
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 197 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 256
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 257 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 316
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 317 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKNTVAEDN 368
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 369 AWGGIVRFQRSF 380
>gi|215275749|sp|A5VPH9|OMP2B_BRUO2 RecName: Full=Porin omp2b; Flags: Precursor
Length = 367
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 101/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + + G
Sbjct: 124 YGDFSDDRDVADGSVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDIINDDVISAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G K+ +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGLKYQATQK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
++ D ++A Y + G V++ K VA D
Sbjct: 304 AAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|222086923|ref|YP_002545457.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221724371|gb|ACM27527.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 362
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 41/261 (15%)
Query: 103 AKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVY 162
+L+ A D +++R S+ ++ S+S+ G +G S +
Sbjct: 89 LQLQTATDTEYGPLKTNTELRWDWQEGASTTTNLLHASISLGGFTVGKEDSQYNVFTGYA 148
Query: 163 SPTTLYNDA-RGLDKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVL------------- 207
+ G ++ L+Y + G A +S +
Sbjct: 149 GDVINDDVVYDGPYELNQLTYNYDAGNGFTAVISLEDTNSSDDASSYDGAWVTSESNHYA 208
Query: 208 -GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGD--NSY 264
+ A Y G V GGYD+ A++A + + G G N Y
Sbjct: 209 PNVVAGAGYKAGAWSFKVVGGYDSIVEEGAVKARVDADFGVFSAFVMGGYNTDGSKLNQY 268
Query: 265 YDKS-----------------KYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAG 307
+ ++V+ G + + + + Y T ++A
Sbjct: 269 AGSNNDESTCPTNQGYLCGWGDWAVWGGASVPINEKLKWNFQVAY------TDSKIFAAT 322
Query: 308 ISAKYMISSGLEAQASVAFND 328
+ K+ L + V++ +
Sbjct: 323 TNVKFNPVKNLLIEPEVSYTN 343
>gi|17987589|ref|NP_540223.1| porin [Brucella melitensis bv. 1 str. 16M]
gi|225852161|ref|YP_002732394.1| outer membrane protein IIIA precursor [Brucella melitensis ATCC
23457]
gi|256044337|ref|ZP_05447241.1| Outer membrane protein IIIA precursor [Brucella melitensis bv. 1
str. Rev.1]
gi|256264328|ref|ZP_05466860.1| porin Omp2a [Brucella melitensis bv. 2 str. 63/9]
gi|260563690|ref|ZP_05834176.1| porin omp2a [Brucella melitensis bv. 1 str. 16M]
gi|265990749|ref|ZP_06103306.1| porin Omp2a [Brucella melitensis bv. 1 str. Rev.1]
gi|297248012|ref|ZP_06931730.1| porin omp2a [Brucella abortus bv. 5 str. B3196]
gi|81832693|sp|Q7CNU3|OMP2A_BRUME RecName: Full=Porin omp2a; Flags: Precursor
gi|841473|gb|AAA67783.1| putative porin [Brucella abortus]
gi|17983296|gb|AAL52487.1| porin [Brucella melitensis bv. 1 str. 16M]
gi|112799467|gb|ABI23034.1| Omp2a [Brucella ovis]
gi|225640526|gb|ACO00440.1| Outer membrane protein IIIA precursor [Brucella melitensis ATCC
23457]
gi|259048756|emb|CBE71339.1| outer membrane protein [Brucella melitensis]
gi|260153706|gb|EEW88798.1| porin omp2a [Brucella melitensis bv. 1 str. 16M]
gi|263001533|gb|EEZ14108.1| porin Omp2a [Brucella melitensis bv. 1 str. Rev.1]
gi|263094602|gb|EEZ18400.1| porin Omp2a [Brucella melitensis bv. 2 str. 63/9]
gi|297175181|gb|EFH34528.1| porin omp2a [Brucella abortus bv. 5 str. B3196]
gi|326408661|gb|ADZ65726.1| outer membrane protein IIIA precursor [Brucella melitensis M28]
gi|326538384|gb|ADZ86599.1| outer membrane protein IIIA precursor [Brucella melitensis M5-90]
Length = 367
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 103/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ ++ +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIAPEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|213133519|gb|ACJ43412.1| Omp2a [Brucella pinnipedialis]
Length = 367
Score = 54.0 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 51/312 (16%), Positives = 101/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++SG N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSGATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGL--EAQASVAFNDNFVKKGVAIDK 339
T ++ D ++A Y + G + S K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSSTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V + SF
Sbjct: 356 AWGGIVRFQHSF 367
>gi|259048746|emb|CBE71334.1| outer membrane protein [Brucella melitensis]
gi|259048748|emb|CBE71335.1| outer membrane protein [Brucella melitensis]
gi|259048754|emb|CBE71338.1| outer membrane protein [Brucella melitensis]
Length = 367
Score = 54.0 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 103/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ ++ +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIAPEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K +A D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTIAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|222085769|ref|YP_002544299.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221723217|gb|ACM26373.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 392
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 50/227 (22%)
Query: 106 KLAVDDVLSMQFA----ESDVRALAFTVPSSKLSVEELSLSMKGARLGY----YKSWSDE 157
+L VD ++ E+ VR S+ ++ +S+ G +G Y +
Sbjct: 113 ELNVDTATDTEYGPLKTETIVRWDWNDGGSTSTNLLWSYISLGGFTVGKKDSAYNLYIGY 172
Query: 158 VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVLG-------- 208
V + +Y+ G ++ L+Y + G A +S + G G
Sbjct: 173 AGDVINDDVIYD---GPYELNQLTYNYDAGNGFTAVISLEDSNSGGSSNSYGASWWVDQS 229
Query: 209 -------IGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG- 260
+ A Y G V GGYD+ AI+A + + G G
Sbjct: 230 TDHYAPDVVAGAGYKAGAWSFKVVGGYDSIVEEGAIKARVDADFGGFTAFLMGGYNTDGD 289
Query: 261 -----------------DNSYYDKSK-----YSVFAGYKFDVAKSIT 285
N ++SK ++V+ G V + +
Sbjct: 290 KLNKYAGTNQDISACTAPNGTVNESKCGWGDWAVWGGVGVPVNEKLK 336
>gi|259048750|emb|CBE71336.1| outer membrane protein [Brucella melitensis]
Length = 367
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 104/312 (33%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ ++ +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
Y++ A + + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YESVIEEWATKVRGNVNITDRFSVWFQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVPFQRSF 367
>gi|75346703|sp|Q45331|OMP2A_BRUOV RecName: Full=Porin omp2a; Flags: Precursor
gi|841489|gb|AAA67795.1| putative porin [Brucella ovis]
gi|11641128|gb|AAG38244.1| Omp2a porin [Brucella ovis]
Length = 346
Score = 53.2 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 33/286 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + + G
Sbjct: 124 YGDFSDDRDVADGSVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDIINDDVISAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
T ++ D ++A Y + G V++
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYT 341
>gi|83375969|gb|ABC17804.1| outer membrane protein 2a [Brucella sp. SSO-1]
Length = 350
Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/286 (15%), Positives = 93/286 (32%), Gaps = 33/286 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 60 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 119
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 120 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 179
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 180 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 239
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 240 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 299
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
T ++ D ++A Y + G V++
Sbjct: 300 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYT 337
>gi|254718783|ref|ZP_05180594.1| Outer membrane protein IIIA precursor [Brucella sp. 83/13]
gi|265983762|ref|ZP_06096497.1| Omp2a porin [Brucella sp. 83/13]
gi|306837501|ref|ZP_07470376.1| Outer membrane protein IIIA precursor [Brucella sp. NF 2653]
gi|11641130|gb|AAG38245.1| Omp2a porin [Brucella suis]
gi|264662354|gb|EEZ32615.1| Omp2a porin [Brucella sp. 83/13]
gi|306407393|gb|EFM63597.1| Outer membrane protein IIIA precursor [Brucella sp. NF 2653]
Length = 367
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 101/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD +A ++ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDSVDVADGGVNTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
T ++ D ++A Y + G V++ K VA D
Sbjct: 304 ATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|841490|gb|AAA67796.1| porin [Brucella ovis]
Length = 380
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + + N N+ G + L+ S +
Sbjct: 77 RYDVKGGDDVYTGSDRKGWDKVLVLHSMFNTNSETELGTLGTYTTLRFNYTSNNSRHDGQ 136
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + + G
Sbjct: 137 YGDFSDDRDVADGSVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDIINDDVISAGS 196
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 197 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 256
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G K+ +
Sbjct: 257 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGLKYQATQK 316
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
++ D ++A Y + G V++ K VA D
Sbjct: 317 AAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDN 368
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 369 AWGGIVRFQRSF 380
>gi|4103767|gb|AAD03401.1| putative porin [Brucella sp. B202R]
Length = 362
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 100/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTSTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKDTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|8810230|gb|AAF80106.1| Omp2b porin [Brucella ovis]
Length = 372
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/321 (15%), Positives = 102/321 (31%), Gaps = 48/321 (14%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTTLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + + G
Sbjct: 124 YGDFSDDRDVADGSVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDIINDDVISAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG------ 227
+ +SY + G A ++ + G G +Y I V GG
Sbjct: 184 YRTGKISYTFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGG 239
Query: 228 ---------YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFA 274
YD+ A + ++ ++ ++S + Y + ++V+
Sbjct: 240 WGSIAGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWG 299
Query: 275 GYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NF 330
G K+ + ++ D ++A Y + G V++
Sbjct: 300 GLKYQATQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGE 351
Query: 331 VKKGVAIDKGVDLSVGLKKSF 351
K VA D V ++SF
Sbjct: 352 WKNTVAEDNAWGGIVHFQRSF 372
>gi|215275750|sp|Q45330|OMP2B_BRUOV RecName: Full=Porin omp2b; Flags: Precursor
Length = 367
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 35/312 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + + N N+ G + L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKVLVLHSMFNTNSETELGTLGTYTTLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + + G
Sbjct: 124 YGDFSDDRDVADGSVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDIINDDVISAGS 183
Query: 175 DKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGG 227
+ ++Y + G A ++ + + D + YA G
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVA 243
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKS 283
YD+ A + ++ ++ ++S N Y + ++V+ G K+ +
Sbjct: 244 YDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGLKYQATQK 303
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDK 339
++ D ++A Y + G V++ K VA D
Sbjct: 304 AAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDN 355
Query: 340 GVDLSVGLKKSF 351
V ++SF
Sbjct: 356 AWGGIVRFQRSF 367
>gi|239831845|ref|ZP_04680174.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
gi|239824112|gb|EEQ95680.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
Length = 372
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 17/216 (7%)
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKS-WSDEVNPVYSPTTLYNDARGLDKMMSLS 181
+A + S+ S+ + + G R+G +S + + + + G + +S
Sbjct: 124 KADNYNGGSTSTSLRYAYIQLGGLRVGLDESAFVTFTGYLGNVISDDVILAGGYRTNLIS 183
Query: 182 YRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------YDAGTN 233
Y G A +S + + I + +G ++ + G YDA
Sbjct: 184 YTFKGGNGFSAIVSLEEGGNSDSNVDVTIKDYMPHVVGGLKYEQSWGKIAGVVAYDARNE 243
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY- 292
A + ++ ++ + S D+ Y GY+ + S + GG +
Sbjct: 244 EWAGKVRGDVNITDQFSVWLQGAYKSNDDHY------GTSGGYRVRIVDSFYGTWGGDWA 297
Query: 293 -FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFN 327
+G + + A Y S A A+VA+
Sbjct: 298 VWGGAAFKATSKATFNVQAAYDDSETFAATANVAYQ 333
>gi|239831478|ref|ZP_04679807.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
gi|239823745|gb|EEQ95313.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
Length = 377
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 27/211 (12%)
Query: 135 SVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDAR------GLDKMMSLSYRHSFG- 187
S+ + + G R+G DE V P L N G + +SY + G
Sbjct: 135 SLRYAYIQLGGLRVGL-----DESAFVTFPGYLGNVINDDVILAGGYRTNLISYTFTGGN 189
Query: 188 LLKAGLS----------TDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI 237
A LS D+ KD V+G YA G YDA A
Sbjct: 190 GFSAILSLEEGGNGDSDVDVTLKDYTPHVVG---GLKYAGGWGSIAGVVAYDARNEEWAG 246
Query: 238 RANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY--FGD 295
+ ++ ++ + S D++YY +++ + S + GG + +G
Sbjct: 247 KVRADVNITDRFSVWVMGGYKSNDDNYYVTQEFADGSWRGIRRIDSFYGTWGGDWAVWGG 306
Query: 296 INKTGKDGWSAGISAKYMISSGLEAQASVAF 326
+ + + Y + A A+VA+
Sbjct: 307 AAFKATEKATFNVQVAYEDAETFAATANVAY 337
>gi|213133547|gb|ACJ43426.1| Omp2a [Brucella ceti]
Length = 362
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKDTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|10198217|gb|AAG15258.1| omp2a [Brucella ceti]
gi|10198225|gb|AAG15262.1| omp2a [Brucella sp. 7763/2]
Length = 362
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKDTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|213133545|gb|ACJ43425.1| Omp2b [Brucella ceti]
Length = 362
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 32/289 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY GN+ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGNDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFGLLKAGLSTDLLQKDGLKQVLG------------IGYMASYAIGKIRSTVTGGYDA 230
+ G + + D G + YA G YD+
Sbjct: 182 TFTGGNGFSAVIALEQGGDNDGGYTGATNCHIDGYMPDVVGGLKYAGGWGSIAGVVAYDS 241
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITI 286
A + ++ ++ ++S + Y + ++V+ G KF + T
Sbjct: 242 VIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGAKFIATEKATF 301
Query: 287 SGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFNDNFVKK 333
++ D ++A Y + G V++ F ++
Sbjct: 302 --------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKPFSQR 342
>gi|261324759|ref|ZP_05963956.1| porin [Brucella neotomae 5K33]
gi|841486|gb|AAA67793.1| porin [Brucella neotomae]
gi|261300739|gb|EEY04236.1| porin [Brucella neotomae 5K33]
Length = 375
Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 100/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 311 KATF--------NLQAAHDDWGKTAVTANVAYELVPGFTVAPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|163842911|ref|YP_001627315.1| Outer membrane protein IIIA precursor [Brucella suis ATCC 23445]
gi|163673634|gb|ABY37745.1| Outer membrane protein IIIA precursor [Brucella suis ATCC 23445]
Length = 375
Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L N N+ T + LK + + S V
Sbjct: 77 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSE--TELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|254709768|ref|ZP_05171579.1| Outer membrane protein IIIA precursor [Brucella pinnipedialis
B2/94]
gi|256031258|ref|ZP_05444872.1| Outer membrane protein IIIA precursor [Brucella pinnipedialis
M292/94/1]
Length = 283
Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 44 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 103
Query: 179 SLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAG 231
++Y + G A ++ + + D + YA G YD+
Sbjct: 104 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSV 163
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 164 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKATF- 222
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 223 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 275
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 276 IVRFQRSF 283
>gi|261317300|ref|ZP_05956497.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|265988338|ref|ZP_06100895.1| outer membrane protein 2a [Brucella pinnipedialis M292/94/1]
gi|261296523|gb|EEY00020.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|264660535|gb|EEZ30796.1| outer membrane protein 2a [Brucella pinnipedialis M292/94/1]
Length = 277
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 38 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 97
Query: 179 SLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAG 231
++Y + G A ++ + + D + YA G YD+
Sbjct: 98 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSV 157
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 158 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKATF- 216
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 217 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 269
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 270 IVRFQRSF 277
>gi|153009972|ref|YP_001371187.1| porin [Ochrobactrum anthropi ATCC 49188]
gi|151561860|gb|ABS15358.1| porin [Ochrobactrum anthropi ATCC 49188]
gi|155369823|emb|CAM98698.1| outer membrane protein 2b [Ochrobactrum anthropi ATCC 49188]
Length = 372
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 32/215 (14%)
Query: 131 SSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDAR------GLDKMMSLSYRH 184
S S+ + + G R+G DE V P L N G + +SY
Sbjct: 131 SENSSLRYAYIQLGGLRVGL-----DESAFVTFPGYLGNVINDDVILAGGYRTNLISYTF 185
Query: 185 SFG-LLKAGLS----------TDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTN 233
+ G A LS D+ D ++G YA G YDA
Sbjct: 186 TGGNGFSAILSLEEGGNGDSDVDVTLNDYTPHIVG---GLKYAGGWGSIAAVAAYDARNE 242
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY- 292
A + ++ ++ + S D++Y AGY + V S + GG +
Sbjct: 243 EWAGKVRGDVNITDRFSVWVQGGYKSNDDTYAVDR-----AGYSYRVIDSFYGTWGGDWA 297
Query: 293 -FGDINKTGKDGWSAGISAKYMISSGLEAQASVAF 326
+G + + + Y + A A+VA+
Sbjct: 298 VWGGAAFKATEKATFNLQLAYDDTKTFAATANVAY 332
>gi|10198215|gb|AAG15257.1| omp2b [Brucella ceti]
gi|213133549|gb|ACJ43427.1| Omp2b [Brucella ceti]
Length = 362
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS ++ + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMKFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|153009551|ref|YP_001370766.1| porin [Ochrobactrum anthropi ATCC 49188]
gi|151561439|gb|ABS14937.1| porin [Ochrobactrum anthropi ATCC 49188]
Length = 372
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 17/216 (7%)
Query: 123 RALAFTVPSSKLSVEELSLSMKGARLGYYKS-WSDEVNPVYSPTTLYNDARGLDKMMSLS 181
+A + S+ S+ + + G R+G +S + + + + G + +S
Sbjct: 124 KANNYNGGSTSTSLRYAYIQLGGLRIGLDESAFVTFTGYLGNVISDDVILAGGYRTNLIS 183
Query: 182 YRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------YDAGTN 233
Y G A +S + + I + +G ++ + G YDA
Sbjct: 184 YTFKGGNGFSAIVSFEEGGNTDSNVDVTIKDYMPHVVGGLKYEQSWGKIAGVVAYDARNE 243
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY- 292
A + ++ ++ + S D+ Y GY+ + S + GG +
Sbjct: 244 EWAGKVRGDVNITDQFSVWLQGAYKSNDDHY------GTSGGYRVRIIDSFYGTWGGDWA 297
Query: 293 -FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFN 327
+G + + A Y S A A+VA+
Sbjct: 298 VWGGAAYKATSKATFNVQAAYDDSETFAATANVAYQ 333
>gi|260168394|ref|ZP_05755205.1| porin Omp2a [Brucella sp. F5/99]
gi|261757855|ref|ZP_06001564.1| outer membrane protein 2a [Brucella sp. F5/99]
gi|261737839|gb|EEY25835.1| outer membrane protein 2a [Brucella sp. F5/99]
Length = 249
Score = 49.8 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 10 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 69
Query: 179 SLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAG 231
++Y + G A ++ + + D + YA G YD+
Sbjct: 70 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSV 129
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 130 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKATF- 188
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 189 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 241
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 242 IVRFQRSF 249
>gi|254703974|ref|ZP_05165802.1| Outer membrane protein IIIA precursor [Brucella suis bv. 3 str.
686]
Length = 283
Score = 49.8 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 44 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 103
Query: 179 SLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------YDAG 231
++Y + G + + + + I + +G ++ G YD
Sbjct: 104 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGAVAYDPV 163
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V G KF + T
Sbjct: 164 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVRGGAKFIATEKATF- 222
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 223 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 275
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 276 IVRFQRSF 283
>gi|261754626|ref|ZP_05998335.1| outer membrane protein 2a [Brucella suis bv. 3 str. 686]
gi|261744379|gb|EEY32305.1| outer membrane protein 2a [Brucella suis bv. 3 str. 686]
Length = 277
Score = 49.8 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 38 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 97
Query: 179 SLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------YDAG 231
++Y + G + + + + I + +G ++ G YD
Sbjct: 98 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGAVAYDPV 157
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V G KF + T
Sbjct: 158 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVRGGAKFIATEKATF- 216
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 217 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 269
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 270 IVRFQRSF 277
>gi|222085379|ref|YP_002543909.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221722827|gb|ACM25983.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 355
Score = 49.8 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 27/205 (13%)
Query: 139 LSLSMKGARLG----YYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGL 193
++S+ G +G Y ++ V + + G D++ L+Y + G A +
Sbjct: 128 ANISLGGFLVGKNDSVYSTFLGYAGDVINDDVIEYGINGGDELNQLTYNYDAGNGFTAVI 187
Query: 194 ST-DLLQKDGLKQVLG----------IGYMASYAIGKIRSTVTGGYDAGTNNVAIRANIS 242
S D G G + A Y G + V GGYD+ A++A +
Sbjct: 188 SLEDSNSGTGATGANGENSSDHYAPDVVAGAGYKAGAWQFRVVGGYDSIVEEGAVKARVD 247
Query: 243 SPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD 302
+ G + + N +KY+ G +G + D
Sbjct: 248 ADFGILTAFVMGG-YNTDGN---KLNKYAGAGGDGLGWG-------DWAVWGGVGVPVND 296
Query: 303 GWSAGISAKYMISSGLEAQASVAFN 327
+ Y A +V FN
Sbjct: 297 KLKWNLQLSYDDVKTFAATTNVKFN 321
>gi|225627143|ref|ZP_03785181.1| Outer membrane protein IIIA precursor [Brucella ceti str. Cudo]
gi|225617978|gb|EEH15022.1| Outer membrane protein IIIA precursor [Brucella ceti str. Cudo]
Length = 382
Score = 49.8 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 50/317 (15%), Positives = 97/317 (30%), Gaps = 50/317 (15%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+
Sbjct: 84 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFN------YTSNN 137
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
S V SS +E + + G R+G +S + + G +
Sbjct: 138 SGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTG 197
Query: 179 SLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG---------- 227
+SY + G A ++ + G G +Y I V GG
Sbjct: 198 KISYTFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSI 253
Query: 228 -----YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKF 278
YD+ A + ++ ++ ++S + Y + ++V+ G K+
Sbjct: 254 AGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKY 313
Query: 279 DVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKG 334
+ ++ D ++A Y + G V++ K
Sbjct: 314 QATQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNT 365
Query: 335 VAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 366 VAEDNAWGGIVRFQRSF 382
>gi|260566778|ref|ZP_05837248.1| porin omp2a [Brucella suis bv. 4 str. 40]
gi|260156296|gb|EEW91376.1| porin omp2a [Brucella suis bv. 4 str. 40]
Length = 277
Score = 49.8 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 38 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 97
Query: 179 SLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------YDAG 231
++Y + G + + + + I + +G ++ G YD
Sbjct: 98 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGAVAYDPV 157
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 158 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKATF- 216
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 217 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 269
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 270 IVRFQRSF 277
>gi|215275748|sp|Q45324|OMP2B_BRUNE RecName: Full=Porin omp2b; Flags: Precursor
Length = 362
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 100/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYELVPGFTVAPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|215275751|sp|B0CKW5|OMP2B_BRUSI RecName: Full=Porin omp2b; Flags: Precursor
Length = 362
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L N N+ T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSE--TELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|54695155|dbj|BAD67159.1| putative porin [Brucella sp. JM13/00]
Length = 375
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/317 (15%), Positives = 97/317 (30%), Gaps = 50/317 (15%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+
Sbjct: 77 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFN------YTSNN 130
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
S V SS +E + + G R+G +S + + G +
Sbjct: 131 SGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTG 190
Query: 179 SLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG---------- 227
+SY + G A ++ + G G +Y I V GG
Sbjct: 191 KISYTFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSI 246
Query: 228 -----YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKF 278
YD+ A + ++ ++ ++S + Y + ++V+ G K+
Sbjct: 247 AGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKY 306
Query: 279 DVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKG 334
+ ++ D ++A Y + G V++ K
Sbjct: 307 QATQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNT 358
Query: 335 VAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 359 VAEDNAWGGIVRFQRSF 375
>gi|62467629|gb|AAX83998.1| Omp2b [Brucella suis]
Length = 361
Score = 49.4 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L N N+ T + LK + + S V
Sbjct: 63 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSE--TELGTLKTFTELRFNYAANNSGVD 120
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 121 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 180
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 181 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 236
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 237 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 296
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 297 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 348
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 349 NAWGGIVRFQRSF 361
>gi|10198223|gb|AAG15261.1| omp2b [Brucella sp. 7763/2]
Length = 362
Score = 49.4 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS ++ + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMKFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 PFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|261219779|ref|ZP_05934060.1| porin [Brucella ceti M13/05/1]
gi|261322662|ref|ZP_05961859.1| porin [Brucella ceti M644/93/1]
gi|260924868|gb|EEX91436.1| porin [Brucella ceti M13/05/1]
gi|261295352|gb|EEX98848.1| porin [Brucella ceti M644/93/1]
Length = 362
Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 51/309 (16%), Positives = 96/309 (31%), Gaps = 34/309 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY GN+ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGNDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFGLLKAGLSTDLLQKDGLKQVLG------------IGYMASYAIGKIRSTVTGGYDA 230
+ G + + D G + YA G YD+
Sbjct: 182 TFTGGNGFSAVIALEQGGDNDGGYTGATNCHIDGYMPDVVGGLKYAGGWGSIAGVVAYDS 241
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITI 286
A + ++ ++ ++S + Y + ++V+ G KF + T
Sbjct: 242 VIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGAKFIATEKATF 301
Query: 287 SGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVD 342
++ D ++A Y + G V++ K VA D
Sbjct: 302 --------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWG 353
Query: 343 LSVGLKKSF 351
V ++SF
Sbjct: 354 GIVRFQRSF 362
>gi|222082167|ref|YP_002541532.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221726846|gb|ACM29935.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 363
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 139 LSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDA-RGLDKMMSLSYRHSFG-LLKAGLSTD 196
++S+ G +G S + + G ++ L+Y + G A +S +
Sbjct: 125 ANISLGGFTVGKLDSQYNLFVGYAGDVINDDVIYDGPYELNQLTYNYDAGNGFTAVISLE 184
Query: 197 LLQKDGLKQVLGIG---------------YMASYAIGKIRSTVTGGYDAGTNNVAIRANI 241
G G Y G V GGYD+ A++A +
Sbjct: 185 DSNSSGSDASYGSSWWADDKANHYAPDAVAGIGYKTGAWAFKVVGGYDSIVEEGAVKARV 244
Query: 242 SSPVSRAGTLDCGAVWASGDN 262
+ G + + N
Sbjct: 245 DADFGAFSAFLMGG-YNTDGN 264
>gi|62467631|gb|AAX83999.1| Omp2b [Brucella suis]
Length = 357
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L N N+ T + LK + + S V
Sbjct: 59 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSE--TELGTLKTFTELRFNYAANNSGVD 116
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 117 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 176
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 177 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 232
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 233 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 292
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 293 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 344
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 345 NAWGGIVRFQRSF 357
>gi|239831476|ref|ZP_04679805.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
gi|239823743|gb|EEQ95311.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
Length = 403
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 68/204 (33%), Gaps = 14/204 (6%)
Query: 132 SKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LL 189
+++ + + G R+G +S + A G + +SY + G
Sbjct: 181 QSTTLQFAYIELGGLRVGLDESSFHTFTGYLGDVINDDVVAAGAYRTGKISYTFTGGNGF 240
Query: 190 KAGLSTDLLQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSR 247
A ++ + + + + YA G YD+ A + ++
Sbjct: 241 SATVALEEGGEGYVVNDYVPHVVGGVKYAGGWGAIAAVVAYDSVIEEWAAKVRGDVNLTD 300
Query: 248 AGTLDCGAVWASGDN--SYYDK--SKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDG 303
++ A ++S ++ Y + ++V+ G K+ + I+ Y D KT
Sbjct: 301 QFSVWVQAGYSSEESNDQMYGQWGGDWAVWGGLKYKATEKAVINVQAAY-EDWGKTA--- 356
Query: 304 WSAGISAKYMISSGLEAQASVAFN 327
+ Y + G V++
Sbjct: 357 --VTANVAYQLVPGFTITPEVSYT 378
>gi|161618611|ref|YP_001592498.1| Outer membrane protein IIIA precursor [Brucella canis ATCC 23365]
gi|841478|gb|AAA67787.1| porin [Brucella canis]
gi|161335422|gb|ABX61727.1| Outer membrane protein IIIA precursor [Brucella canis ATCC 23365]
Length = 375
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|23501526|ref|NP_697653.1| porin Omp2a [Brucella suis 1330]
gi|841494|gb|AAA67799.1| porin [Brucella suis 1330]
gi|23347435|gb|AAN29568.1| porin Omp2a [Brucella suis 1330]
Length = 375
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYRIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|10198211|gb|AAG15255.1| omp2b [Brucella ceti]
Length = 362
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 51/309 (16%), Positives = 96/309 (31%), Gaps = 34/309 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY GN+ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGNDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFGLLKAGLSTDLLQKDGLKQVLG------------IGYMASYAIGKIRSTVTGGYDA 230
+ G + + D G + YA G YD+
Sbjct: 182 TFTGGNGFSAVIALEQGGDNDGGYTGATNCHIDGYMPDVVGGLKYAGGWGSIAGVVAYDS 241
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITI 286
A + ++ ++ ++S + Y + ++V+ G KF + T
Sbjct: 242 VIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGAKFIATEKATF 301
Query: 287 SGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVD 342
++ D ++A Y + G V++ K VA D
Sbjct: 302 --------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWG 353
Query: 343 LSVGLKKSF 351
V ++SF
Sbjct: 354 GIVRFQRSF 362
>gi|237815095|ref|ZP_04594093.1| Outer membrane protein IIIA precursor [Brucella abortus str. 2308
A]
gi|237789932|gb|EEP64142.1| Outer membrane protein IIIA precursor [Brucella abortus str. 2308
A]
Length = 382
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 84 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 141
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 142 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 201
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 202 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 257
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 258 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 317
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 318 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 369
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 370 NAWGGIVRFQRSF 382
>gi|260462341|ref|ZP_05810549.1| porin [Mesorhizobium opportunistum WSM2075]
gi|259031835|gb|EEW33103.1| porin [Mesorhizobium opportunistum WSM2075]
Length = 361
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 17/230 (7%)
Query: 133 KLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAG 192
+S+ + + G R+G +S + + + ++ F
Sbjct: 138 GVSLNFAWIQLGGFRVGKDESAWVTFSGYAGNVIDDSLVGYGGDFDTGVVQYYFDAGNGF 197
Query: 193 LSTDLLQKDGLKQVLG-----IGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSR 247
+ L+ + I Y G + TG YD+ + + S
Sbjct: 198 SAVVSLEDGAGANTVDSYVPHIVGGVKYTQGWGSISATGVYDSVWEEWGGKVRVDVNASD 257
Query: 248 AGTLDCGAVWASGDNSYYD-----KSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD 302
A +L + S N ++ + ++VF G + + + + Y
Sbjct: 258 ALSLWAMVNYGSESNVIHNSFKNWEGNWAVFGGGTYKFNEKTSFNAQVSY------DEGK 311
Query: 303 GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAI-DKGVDLSVGLKKSF 351
+ Y I G V + + A+ G + ++ F
Sbjct: 312 SLGVAANIAYNIVPGFAIIGEVDYVNKATSDYRAVSSDGFGGMLRFQRDF 361
>gi|213133517|gb|ACJ43411.1| Omp2b [Brucella pinnipedialis]
Length = 362
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|62467633|gb|AAX84000.1| Omp2b [Brucella suis]
Length = 339
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L N N+ T + LK + + S V
Sbjct: 41 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSE--TELGTLKTFTELRFNYAANNSGVD 98
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 99 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 158
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 159 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 214
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 215 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 274
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 275 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 326
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 327 NAWGGIVRFQRSF 339
>gi|222085526|ref|YP_002544056.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221722974|gb|ACM26130.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 366
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 45/226 (19%)
Query: 104 KLKLAVDDVLSMQFAESDVRAL-AFTVPSSKLSVEE---LSLSMKGARLGYYKSWSDEVN 159
+++L VD ++ + + + ++ ++S+ G +G S +
Sbjct: 86 RVELNVDTATDTEYGPLKTNMILRWEWNDGGATADKLLFANISLAGFTVGKLDSQYNLYT 145
Query: 160 PVYSPTTLYNDA-RGLDKMMSLSYRHSFGL-LKAGLSTDLLQKDGLKQVLG--------- 208
+ G ++ L+Y++ G A +S + G
Sbjct: 146 GYAGDVINDDAIYDGPYELNQLTYKYDTGSGFSAVISLEDSNSGSDSDSYGGAWVTSKAD 205
Query: 209 -----IGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--- 260
+ Y + V GGYD+ AI+A + + G W +
Sbjct: 206 QYAPNVVAGLGYTTDTLGFKVVGGYDSIVEEGAIKARVDAKFGGVEAFLMGG-WNTDGKK 264
Query: 261 ----DNSYYDKS-----------------KYSVFAGYKFDVAKSIT 285
SY D+S ++V+ G V +
Sbjct: 265 LNQYAGSYQDESACTTSDGVVHGAKCGWGDWAVWGGVGVPVNDKLK 310
>gi|62289600|ref|YP_221393.1| Omp2b, porin [Brucella abortus bv. 1 str. 9-941]
gi|82699528|ref|YP_414102.1| hypothetical protein BAB1_0660 [Brucella melitensis biovar Abortus
2308]
gi|261751969|ref|ZP_05995678.1| porin subfamily protein [Brucella suis bv. 5 str. 513]
gi|841474|gb|AAA67784.1| porin [Brucella abortus]
gi|62195732|gb|AAX74032.1| Omp2b, porin [Brucella abortus bv. 1 str. 9-941]
gi|82615629|emb|CAJ10616.1| ATP/GTP-binding site motif A (P-loop):Porin, alpha proteobacteria
type [Brucella melitensis biovar Abortus 2308]
gi|261741722|gb|EEY29648.1| porin subfamily protein [Brucella suis bv. 5 str. 513]
Length = 375
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|254688917|ref|ZP_05152171.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 6 str.
870]
gi|254693399|ref|ZP_05155227.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 3 str.
Tulya]
gi|256113172|ref|ZP_05454049.1| Outer membrane protein IIIA precursor [Brucella melitensis bv. 3
str. Ether]
Length = 283
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 44 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 103
Query: 179 SLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAG 231
++Y + G A ++ + + D + YA G YD+
Sbjct: 104 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSV 163
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 164 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIAPEKATF- 222
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 223 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 275
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 276 IVRFQRSF 283
>gi|260754403|ref|ZP_05866751.1| outer membrane protein [Brucella abortus bv. 6 str. 870]
gi|261213649|ref|ZP_05927930.1| outer membrane protein [Brucella abortus bv. 3 str. Tulya]
gi|265994587|ref|ZP_06107144.1| porin Omp2a [Brucella melitensis bv. 3 str. Ether]
gi|260674511|gb|EEX61332.1| outer membrane protein [Brucella abortus bv. 6 str. 870]
gi|260915256|gb|EEX82117.1| outer membrane protein [Brucella abortus bv. 3 str. Tulya]
gi|262765700|gb|EEZ11489.1| porin Omp2a [Brucella melitensis bv. 3 str. Ether]
Length = 277
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 24/248 (9%)
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
SD R +A S+ ++ +++ G ++G +S + A G +
Sbjct: 38 SDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGSYRTG 97
Query: 179 SLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAG 231
++Y + G A ++ + + D + YA G YD+
Sbjct: 98 KIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSV 157
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITIS 287
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 158 IEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIAPEKATF- 216
Query: 288 GGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDL 343
++ D ++A Y + G V++ K VA D
Sbjct: 217 -------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWGG 269
Query: 344 SVGLKKSF 351
V ++SF
Sbjct: 270 IVRFQRSF 277
>gi|8810226|gb|AAF80104.1| Omp2b porin [Brucella abortus]
Length = 357
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 97/304 (31%), Gaps = 29/304 (9%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAGTNNV 235
+ G A ++ + + D + YA G YD+
Sbjct: 182 TFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGSIAGVVAYDSVIEEW 241
Query: 236 AIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITISGGGQ 291
A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 242 AAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQKAAF----- 296
Query: 292 YFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDLSVGL 347
++ D ++A Y + G V++ K VA D V
Sbjct: 297 ---NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRF 353
Query: 348 KKSF 351
++SF
Sbjct: 354 QRSF 357
>gi|213133543|gb|ACJ43424.1| Omp2a [Brucella ceti]
Length = 362
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 51/309 (16%), Positives = 96/309 (31%), Gaps = 34/309 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY GN+ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGNDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFGLLKAGLSTDLLQKDGLKQVLG------------IGYMASYAIGKIRSTVTGGYDA 230
+ G + + D G + YA G YD+
Sbjct: 182 TFTGGNGFSAVIALEQGGDNDGGYTGATNCHIDGYMPDVVGGLKYAGGWGSIAGVVAYDS 241
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITI 286
A + ++ ++ ++S + Y + ++V+ G KF + T
Sbjct: 242 VIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGAKFIATEKATF 301
Query: 287 SGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVD 342
++ D ++A Y + G V++ K VA D
Sbjct: 302 --------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWG 353
Query: 343 LSVGLKKSF 351
V ++SF
Sbjct: 354 GIVRFQRSF 362
>gi|256369078|ref|YP_003106586.1| porin Omp2b [Brucella microti CCM 4915]
gi|189086073|emb|CAQ15875.1| outer membrane protein 2b [Brucella microti]
gi|189086075|emb|CAQ15876.1| outer membrane protein 2b [Brucella microti]
gi|189086077|emb|CAQ15877.1| outer membrane protein 2b [Brucella microti]
gi|189086081|emb|CAQ15879.1| outer membrane protein 2b [Brucella microti]
gi|255999238|gb|ACU47637.1| porin Omp2b [Brucella microti CCM 4915]
Length = 375
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDRFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|115361669|gb|ABI95892.1| omp2b [Brucella sp. 02611]
gi|115361673|gb|ABI95894.1| omp2b [Brucella sp. F599]
Length = 362
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 50/317 (15%), Positives = 97/317 (30%), Gaps = 50/317 (15%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFN------YTSNN 117
Query: 120 SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMM 178
S V SS +E + + G R+G +S + + G +
Sbjct: 118 SGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTG 177
Query: 179 SLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG---------- 227
+SY + G A ++ + G G +Y I V GG
Sbjct: 178 KISYTFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSI 233
Query: 228 -----YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKF 278
YD+ A + ++ ++ ++S + Y + ++V+ G K+
Sbjct: 234 AGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKY 293
Query: 279 DVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKG 334
+ ++ D ++A Y + G V++ K
Sbjct: 294 QATQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNT 345
Query: 335 VAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 346 VAEDNAWGGIVRFQRSF 362
>gi|17987588|ref|NP_540222.1| porin [Brucella melitensis bv. 1 str. 16M]
gi|260563691|ref|ZP_05834177.1| porin [Brucella melitensis bv. 1 str. 16M]
gi|265990750|ref|ZP_06103307.1| porin Omp2a [Brucella melitensis bv. 1 str. Rev.1]
gi|17983294|gb|AAL52486.1| porin [Brucella melitensis bv. 1 str. 16M]
gi|260153707|gb|EEW88799.1| porin [Brucella melitensis bv. 1 str. 16M]
gi|263001534|gb|EEZ14109.1| porin Omp2a [Brucella melitensis bv. 1 str. Rev.1]
Length = 375
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKGARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|215275745|sp|A9MA15|OMP2B_BRUC2 RecName: Full=Porin omp2b; Flags: Precursor
gi|215275746|sp|Q45078|OMP2B_BRUCA RecName: Full=Porin omp2b; Flags: Precursor
gi|155369819|emb|CAM98696.1| outer membrane protein 2b [Brucella suis]
Length = 362
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|114707134|ref|ZP_01440032.1| outer membrane protein [Fulvimarina pelagi HTCC2506]
gi|114537330|gb|EAU40456.1| outer membrane protein [Fulvimarina pelagi HTCC2506]
Length = 428
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 18/140 (12%)
Query: 135 SVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLS 194
+ + + G +GY S E + T + G ++ +SY + G L A +S
Sbjct: 133 DADNAYIQLGGLTMGYLDSLWTEGD---GFATDTDLPVGDFEVNRVSYTFAAGGLAASIS 189
Query: 195 T-DLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSR------ 247
D + D V+G Y+ G + G Y+ A VS
Sbjct: 190 LEDDVSGDFAPNVVG---KLGYSGGFGGFNLYGVYEESVPFGAGGLAGPVLVSPFIPAIP 246
Query: 248 -----AGTLDCGAVWASGDN 262
V G N
Sbjct: 247 AIGALPAVPAVPGVATFGPN 266
>gi|841482|gb|AAA67790.1| porin [Brucella melitensis]
Length = 375
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKGARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|10198213|gb|AAG15256.1| omp2a [Brucella ceti]
Length = 362
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 50/309 (16%), Positives = 96/309 (31%), Gaps = 34/309 (11%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY GN+ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGNDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKS-WSDEVNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + + + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFLTFTGYLGDVINDDVISACSYRTGKISY 181
Query: 183 RHSFGLLKAGLSTDLLQKDGLKQVLG------------IGYMASYAIGKIRSTVTGGYDA 230
+ G + + D G + YA G YD+
Sbjct: 182 TFTGGNGFSAVIALEQGGDNDGGYTGATNCHIDGYMPDVVGGLKYAGGWGSIAGVVAYDS 241
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITI 286
A + ++ ++ ++S + Y + ++V+ G KF + T
Sbjct: 242 VIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGAKFIATEKATF 301
Query: 287 SGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVD 342
++ D ++A Y + G V++ K VA D
Sbjct: 302 --------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKDTVAEDNAWG 353
Query: 343 LSVGLKKSF 351
V ++SF
Sbjct: 354 GIVRFQRSF 362
>gi|215275752|sp|Q45428|OMP2B_BRUSU RecName: Full=Porin omp2b; Flags: Precursor
Length = 362
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYRIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|213133541|gb|ACJ43423.1| Omp2b [Brucella pinnipedialis]
Length = 362
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|225852162|ref|YP_002732395.1| outer membrane protein IIIA precursor [Brucella melitensis ATCC
23457]
gi|265999547|ref|ZP_06111730.1| porin Omp2a [Brucella melitensis bv. 2 str. 63/9]
gi|225640527|gb|ACO00441.1| Outer membrane protein IIIA precursor [Brucella melitensis ATCC
23457]
gi|263094601|gb|EEZ18399.1| porin Omp2a [Brucella melitensis bv. 2 str. 63/9]
Length = 375
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYSGTDRNGWDKGARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + ++Y
Sbjct: 135 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKIAY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 251 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 311 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|213133521|gb|ACJ43413.1| Omp2b [Brucella pinnipedialis]
gi|213133525|gb|ACJ43415.1| Omp2b [Brucella pinnipedialis]
gi|213133529|gb|ACJ43417.1| Omp2b [Brucella pinnipedialis]
gi|213133533|gb|ACJ43419.1| Omp2b [Brucella pinnipedialis]
gi|213133537|gb|ACJ43421.1| Omp2b [Brucella pinnipedialis]
Length = 362
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|62467635|gb|AAX84001.1| Omp2b [Brucella suis]
Length = 359
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 98/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 61 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 118
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 119 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 178
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 179 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 234
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 235 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 294
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 295 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 346
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 347 NAWGGIVRFQRSF 359
>gi|10198219|gb|AAG15259.1| omp2b [Brucella pinnipedialis]
Length = 362
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 90/287 (31%), Gaps = 40/287 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
T ++ D ++A Y + G V++
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYT 336
>gi|75428087|sp|Q44665|OMP2B_BRUA1 RecName: Full=Porin omp2b; Flags: Precursor
gi|215275743|sp|Q2YMY7|OMP2B_BRUA2 RecName: Full=Porin omp2b; Flags: Precursor
gi|215275744|sp|Q44619|OMP2B_BRUAB RecName: Full=Porin omp2b; Flags: Precursor
gi|455129|gb|AAA83991.1| unknown protein [Brucella abortus]
gi|155369803|emb|CAM98688.1| outer membrane protein 2b [Brucella suis]
gi|155369807|emb|CAM98690.1| outer membrane protein 2b [Brucella suis]
gi|155369811|emb|CAM98692.1| outer membrane protein 2b [Brucella suis]
gi|155369815|emb|CAM98694.1| outer membrane protein 2b [Brucella suis]
Length = 362
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|265996879|ref|ZP_06109436.1| outer membrane protein [Brucella ceti M490/95/1]
gi|262551266|gb|EEZ07337.1| outer membrane protein [Brucella ceti M490/95/1]
Length = 347
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 40/287 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 69 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 126
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS ++ + + G R+G +S + + G + +SY
Sbjct: 127 GKYGNETSSGTVMKFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 186
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 187 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 242
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 243 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 302
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
T ++ D ++A Y + G V++
Sbjct: 303 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYT 341
>gi|146189611|emb|CAM91982.1| outer membrane protein 2b [Brucella microti CCM 4915]
gi|146189613|emb|CAM91983.1| outer membrane protein 2b [Brucella microti]
Length = 362
Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDRFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|297248013|ref|ZP_06931731.1| porin omp2b [Brucella abortus bv. 5 str. B3196]
gi|297175182|gb|EFH34529.1| porin omp2b [Brucella abortus bv. 5 str. B3196]
Length = 349
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 51 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 108
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 109 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 168
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 169 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 224
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 225 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 284
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 285 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 336
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 337 NAWGGIVRFQRSF 349
>gi|256158368|ref|ZP_05456266.1| Outer membrane protein IIIA precursor [Brucella ceti M490/95/1]
Length = 342
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 40/287 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS ++ + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMKFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G KF +
Sbjct: 238 AYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATE 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
T ++ D ++A Y + G V++
Sbjct: 298 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYT 336
>gi|62467625|gb|AAX83996.1| Omp2b [Brucella suis]
Length = 361
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 63 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 120
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 121 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 180
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 181 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 236
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 237 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 296
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 297 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 348
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 349 NAWGGIVRFQRSF 361
>gi|215275747|sp|Q8YG56|OMP2B_BRUME RecName: Full=Porin omp2b; Flags: Precursor
Length = 362
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKGARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|62467627|gb|AAX83997.1| Omp2b [Brucella suis ATCC 23445]
Length = 357
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 44/287 (15%), Positives = 89/287 (31%), Gaps = 40/287 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L N N+ T + LK + + S V
Sbjct: 63 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSE--TELGTLKTFTELRFNYAANNSGVD 120
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 121 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 180
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 181 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 236
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 237 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 296
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
++ D ++A Y + G V++
Sbjct: 297 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYT 335
>gi|145910327|gb|ABP98814.1| Omp2b [Brucella ovis]
gi|326408662|gb|ADZ65727.1| outer membrane protein IIIA precursor [Brucella melitensis M28]
gi|326538385|gb|ADZ86600.1| outer membrane protein IIIA precursor [Brucella melitensis M5-90]
Length = 362
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 99/313 (31%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKGARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + ++Y
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKIAY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 349
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 350 NAWGGIVRFQRSF 362
>gi|254709769|ref|ZP_05171580.1| Outer membrane protein IIIA precursor [Brucella pinnipedialis
B2/94]
gi|261317301|ref|ZP_05956498.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261296524|gb|EEY00021.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
Length = 278
Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 48/282 (17%), Positives = 88/282 (31%), Gaps = 37/282 (13%)
Query: 95 NAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW 154
+ G T + LK + + S V SS +E + + G R+G +S
Sbjct: 9 STGSETELGTLKTFTELRFNYAANNSGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESE 68
Query: 155 SDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYM 212
+ + G + +SY + G A ++ + G G
Sbjct: 69 FHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGNGFSAVIALEQ----GGDNDGGYTGT 124
Query: 213 ASYAIGKIRSTVTGG---------------YDAGTNNVAIRANISSPVSRAGTLDCGAVW 257
+Y I V GG YD+ A + ++ ++ +
Sbjct: 125 TNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAKVRGDVNITDRFSVWLQGAY 184
Query: 258 ASG--DNSYYDK--SKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK-- 311
+S N Y + ++V+ G KF + T ++ D ++A
Sbjct: 185 SSAATPNQNYGQWGGDWAVWGGAKFIATEKATF--------NLQAAHDDWGKTAVTANVA 236
Query: 312 YMISSGLEAQASVAFND--NFVKKGVAIDKGVDLSVGLKKSF 351
Y + G V++ K VA D V ++SF
Sbjct: 237 YQLVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRSF 278
>gi|83375971|gb|ABC17805.1| outer membrane protein 2b [Brucella sp. SSO-1]
Length = 349
Score = 45.5 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 44/287 (15%), Positives = 89/287 (31%), Gaps = 40/287 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 62 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 119
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 120 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 179
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 180 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 235
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 236 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 295
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
++ D ++A Y + G V++
Sbjct: 296 KAAF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYT 334
>gi|239833891|ref|ZP_04682219.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
gi|239821954|gb|EEQ93523.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
Length = 384
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 96/310 (30%), Gaps = 61/310 (19%)
Query: 82 YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSL 141
+DI + L + + G K +AE+ SS S+ +
Sbjct: 96 WDISTRFTLRASTASETELGTLK-----------TYAETRFEWSNGADSSSTGSLRVAYV 144
Query: 142 SMKGARLGYYKSWSDEVNPVYSPTTLYND---ARGLDKMMSLSYRHSF-GLLKAGLSTDL 197
+ G R+G S + V ++ND G + ++SY ++ A L+ +
Sbjct: 145 DLGGLRVGLDYSVF--TSFVGYLGDVFNDDVIPAGGARTAAISYTYTGKDGWSAVLALEQ 202
Query: 198 LQKDGLKQVLGIGYMASYAI----GKIRSTVTGG-------YDAGTNNVAIRANISSPVS 246
G S G ++ + G YDA A + + ++
Sbjct: 203 GNNKDTDHDYGYDGTISDYAPHVVGGVKYSKDWGAIIAVAAYDARNEEWAGKLRGNLNIT 262
Query: 247 RAGTLDCGAVWASGDNSYYDK----------------------SKYSVFAGYKFDVAKSI 284
+L + S +SY D ++V+ G + ++
Sbjct: 263 DKLSLWAMGAYKSNKDSYMDVKGEDGQVAGQVRAINSFYGQWGGDWAVWGGGAYKMSNKT 322
Query: 285 TISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLS 344
+ Y G + + + Y + G +++ KK V G D
Sbjct: 323 VFNAELSY------DGVNTFYTTANVAYEMVPGFTVTPEISYVRWRDKKSVL--NGTDAW 374
Query: 345 VG---LKKSF 351
G L+++F
Sbjct: 375 QGLIMLQRTF 384
>gi|153009973|ref|YP_001371188.1| porin [Ochrobactrum anthropi ATCC 49188]
gi|151561861|gb|ABS15359.1| porin [Ochrobactrum anthropi ATCC 49188]
gi|155369821|emb|CAM98697.1| outer membrane protein 2a [Ochrobactrum anthropi ATCC 49188]
Length = 355
Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 69/204 (33%), Gaps = 14/204 (6%)
Query: 132 SKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LL 189
+++ + + G R+G +S + A G + +SY + G
Sbjct: 133 QSTTLQFAYIELGGLRVGLDESSFHTFTGYLGDVINDDVVAAGAYRTGKISYTFTGGNGF 192
Query: 190 KAGLSTDLLQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSR 247
A ++ + + + + YA G YD+ A + ++
Sbjct: 193 SATVALEEGGEGYVVNDYVPHVVGGVKYAGGWGAIAAVVAYDSVIEEWAAKVRGDVNLTD 252
Query: 248 AGTLDCGAVWASGDN--SYYDK--SKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDG 303
++ A ++S ++ Y + ++V+ G K+ ++ I+ Y D KT
Sbjct: 253 QFSVWVQAGYSSEESNDQMYGQWGGDWAVWGGLKYKASEKAVINVQAAY-EDWGKTA--- 308
Query: 304 WSAGISAKYMISSGLEAQASVAFN 327
+ Y + G V++
Sbjct: 309 --VTANVAYQLVPGFTITPEVSYT 330
>gi|319784520|ref|YP_004143996.1| porin [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170408|gb|ADV13946.1| porin [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 378
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 82/292 (28%), Gaps = 30/292 (10%)
Query: 57 GGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQ 116
GG + AR E N + + + G T + LK + +
Sbjct: 69 GGDVGSFDGARSADHQDIGESNDT-W--RKRARFTLKTWTGQETELGTLKTYTETRFNFS 125
Query: 117 FAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLD 175
+ D + +S+ + + G R+G +S D V + G
Sbjct: 126 NTQRDTSPFINAAGNEPVSLNFAWIQLGGLRVGKDESAFDTFVGYAGNVIQDTLVPYGGF 185
Query: 176 KMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAGT 232
+ Y G A +S + + + G T YD+
Sbjct: 186 DTNVIQYYFDAGNGFSAVVSLEEGYGAYTIDSYVPHVVGGVKWTQGWGAITGVVSYDSNY 245
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKS----------------KYSVFAGY 276
VA + + + TL + + DN Y D S ++++ G
Sbjct: 246 EEVATKVRLDVNATNELTLFIMGGYGTDDN-YTDASLNFPAGGRGMYKQWSGNWALWGGG 304
Query: 277 KFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
+ + + + Y N + Y + G A V + +
Sbjct: 305 TYKFNEKTSFNAQVSYDEGKNLG------IAANIAYDVVPGFTVTAEVDYLN 350
>gi|239831208|ref|ZP_04679537.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
gi|239823475|gb|EEQ95043.1| Outer membrane protein IIIA precursor [Ochrobactrum intermedium LMG
3301]
Length = 378
Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 78/266 (29%), Gaps = 56/266 (21%)
Query: 129 VPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDAR------GLDKMMSLSY 182
V S S+ + + G R+G DE V P L N G + +SY
Sbjct: 126 VEGSSGSLRYAYIQLGGLRVGL-----DESAFVTFPGYLGNVINDDVILAGGYRTNLISY 180
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLG-----------IGYMASYAIGKIRSTVTGGYDA 230
+ G A +S + D G + Y G + YDA
Sbjct: 181 TFTGGNGFSAIVSLEQGNNDDTDGKYGFNGVIKDYTPHVVGGLKYEAGWGKIAGVAAYDA 240
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKS---------------------- 268
A + ++ ++ + S + Y ++
Sbjct: 241 RNEEWAGKVRADVNITDRFSIWAMGGYKSNKDEYITQTDGNGNVLGSVRAISSFYGTWGG 300
Query: 269 KYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
++V+ G F V + Y G ++A + Y + G V++
Sbjct: 301 DWAVWGGAAFKVTDKAIFNAQAAY------DGSKTFAATANVAYEMVPGFTVTPEVSYTK 354
Query: 329 NFVKKGVAIDKGVDLSVGL---KKSF 351
K KG D G+ ++SF
Sbjct: 355 WQDDKSYL--KGKDAWQGMVRFQRSF 378
>gi|222087765|ref|YP_002546302.1| porin outer membrane protein [Agrobacterium radiobacter K84]
gi|221725213|gb|ACM28369.1| porin outer membrane protein [Agrobacterium radiobacter K84]
Length = 363
Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 42/207 (20%)
Query: 139 LSLSMKGARLGYYKSWSDEVNPVYSPTTLYND---ARGLDKMMSLSYRHSFG-LLKAGLS 194
++S+ G +G S + T+L ND G ++ L+Y++ G A +S
Sbjct: 125 ANISLGGFTVGKLDSQY--TMYMGYTTSLINDEVVYEGPKELNQLTYKYDSGNGFTALVS 182
Query: 195 TDLLQKDGLKQVL--------------GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
+ + A Y + + GGYD+ AI+A
Sbjct: 183 LEDSNSSATSSSYRGAWQTGKADHYAPDVVAGAGYKGSMFQFRIVGGYDSVVEEGAIKAR 242
Query: 241 ISSPVSRAGTLDCGAVWASGD--NSYYDK------------------SKYSVFAGYKFDV 280
I G GD N Y ++ + G+ +
Sbjct: 243 IDGDFGAFKPFFMGGWNTDGDKLNKYAGSFLNTNAAACPKNGADCGWGDWAFWTGFSYTF 302
Query: 281 AKSITISGGGQYFGD--INKTGKDGWS 305
+ + Y + T W
Sbjct: 303 TPKLQNTTMVAYTDSGILQATTNLAWR 329
>gi|294850885|ref|ZP_06791567.1| porin omp2b [Brucella sp. NVSL 07-0026]
gi|294821754|gb|EFG38744.1| porin omp2b [Brucella sp. NVSL 07-0026]
Length = 362
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 44/287 (15%), Positives = 90/287 (31%), Gaps = 40/287 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 64 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 122 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 181
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 182 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 237
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 238 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 297
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
++ D ++A Y + G V++
Sbjct: 298 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYT 336
>gi|4103766|gb|AAD03400.1| putative porin [Brucella sp. B202R]
Length = 375
Score = 44.8 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 96/313 (30%), Gaps = 42/313 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ + +D + L V+ G T + LK + + S V
Sbjct: 77 RYDVKGGDDVYTGSDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 134
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
S ++ + + G R+G +S + + G + SY
Sbjct: 135 GKYGNETSXGTVMKFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKXSY 194
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 195 TFTGGNGFSAVIALEQ----GGDNDXGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 250
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S N Y + ++V+ G K +
Sbjct: 251 AYDSVIEGWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKXIATE 310
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
T ++ D ++A Y + G V++ K VA D
Sbjct: 311 KATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYTKFGGEWKNTVAED 362
Query: 339 KGVDLSVGLKKSF 351
V ++SF
Sbjct: 363 NAWGGIVRFQRSF 375
>gi|62467623|gb|AAX83995.1| Omp2b [Brucella suis]
Length = 357
Score = 44.8 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 98/312 (31%), Gaps = 42/312 (13%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + S V
Sbjct: 60 RYDVKGGDDVYSGTDRNGWDKSARFALRVS--TGSETELGTLKTFTELRFNYAANNSGVD 117
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
SS +E + + G R+G +S + + G + +SY
Sbjct: 118 GKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISY 177
Query: 183 RHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG-------------- 227
+ G A ++ + G G +Y I V GG
Sbjct: 178 TFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVV 233
Query: 228 -YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAK 282
YD+ A + ++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 234 AYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQ 293
Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAID 338
++ D ++A Y + G V++ K VA D
Sbjct: 294 KAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAED 345
Query: 339 KGVDLSVGLKKS 350
V ++S
Sbjct: 346 NAWGGIVRFQRS 357
>gi|256031259|ref|ZP_05444873.1| Outer membrane protein IIIA precursor [Brucella pinnipedialis
M292/94/1]
gi|265988339|ref|ZP_06100896.1| porin [Brucella pinnipedialis M292/94/1]
gi|264660536|gb|EEZ30797.1| porin [Brucella pinnipedialis M292/94/1]
Length = 278
Score = 44.0 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 45/282 (15%), Positives = 87/282 (30%), Gaps = 37/282 (13%)
Query: 95 NAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW 154
+ G T + LK + + S V SS +E + + G R+G +S
Sbjct: 9 STGSETELGTLKTFTELRFNYAANNSGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESE 68
Query: 155 SDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYM 212
+ + G + +SY + G A ++ + G G
Sbjct: 69 FHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGNGFSAVIALEQ----GGDNDGGYTGT 124
Query: 213 ASYAIGKIRSTVTGG---------------YDAGTNNVAIRANISSPVSRAGTLDCGAVW 257
+Y I V GG YD+ A + ++ ++ +
Sbjct: 125 TNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAY 184
Query: 258 ASG--DNSYYDK--SKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK-- 311
+S + Y + ++V+ G K+ + ++ D ++A
Sbjct: 185 SSAATPDQNYGQWGGDWAVWGGLKYQATQKAAF--------NLQAAHDDWGKTAVTANVA 236
Query: 312 YMISSGLEAQASVAFND--NFVKKGVAIDKGVDLSVGLKKSF 351
Y + G V++ K VA D V ++SF
Sbjct: 237 YQLVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRSF 278
>gi|90420849|ref|ZP_01228754.1| putative porin [Aurantimonas manganoxydans SI85-9A1]
gi|90334824|gb|EAS48596.1| putative porin [Aurantimonas manganoxydans SI85-9A1]
Length = 433
Score = 43.6 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 122 VRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLS 181
A + +++ + + G +GY + E + T + G + +S
Sbjct: 128 QNAGGAYSNDASYNMDMGFIQLGGLTMGYLDTLWTEGD---GLLTDTDLPVGDYQTNRIS 184
Query: 182 YRHSFGLLKAGLSTDLLQKDGLKQ-VLGIGYMASYAIGKIRSTVTGGYD 229
Y ++ A LS L+ D + +YA G + G YD
Sbjct: 185 YTYAANGFTAALS---LEDDATGNFAPDVVGRLAYAGGWGSVYLAGSYD 230
>gi|254688918|ref|ZP_05152172.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 6 str.
870]
gi|254693400|ref|ZP_05155228.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 3 str.
Tulya]
gi|254697051|ref|ZP_05158879.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 2 str.
86/8/59]
gi|254703975|ref|ZP_05165803.1| Outer membrane protein IIIA precursor [Brucella suis bv. 3 str.
686]
gi|254707649|ref|ZP_05169477.1| Outer membrane protein IIIA precursor [Brucella pinnipedialis
M163/99/10]
gi|254729949|ref|ZP_05188527.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 4 str.
292]
gi|256113182|ref|ZP_05454050.1| Outer membrane protein IIIA precursor [Brucella melitensis bv. 3
str. Ether]
gi|256257166|ref|ZP_05462702.1| Outer membrane protein IIIA precursor [Brucella abortus bv. 9 str.
C68]
gi|260566777|ref|ZP_05837247.1| porin omp2b [Brucella suis bv. 4 str. 40]
gi|260754404|ref|ZP_05866752.1| porin subfamily protein [Brucella abortus bv. 6 str. 870]
gi|260757623|ref|ZP_05869971.1| porin subfamily protein [Brucella abortus bv. 4 str. 292]
gi|260761449|ref|ZP_05873792.1| porin subfamily protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260883430|ref|ZP_05895044.1| porin [Brucella abortus bv. 9 str. C68]
gi|261213650|ref|ZP_05927931.1| porin subfamily protein [Brucella abortus bv. 3 str. Tulya]
gi|261315144|ref|ZP_05954341.1| porin [Brucella pinnipedialis M163/99/10]
gi|261754627|ref|ZP_05998336.1| porin subfamily protein [Brucella suis bv. 3 str. 686]
gi|265994588|ref|ZP_06107145.1| porin [Brucella melitensis bv. 3 str. Ether]
gi|260156295|gb|EEW91375.1| porin omp2b [Brucella suis bv. 4 str. 40]
gi|260667941|gb|EEX54881.1| porin subfamily protein [Brucella abortus bv. 4 str. 292]
gi|260671881|gb|EEX58702.1| porin subfamily protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260674512|gb|EEX61333.1| porin subfamily protein [Brucella abortus bv. 6 str. 870]
gi|260872958|gb|EEX80027.1| porin [Brucella abortus bv. 9 str. C68]
gi|260915257|gb|EEX82118.1| porin subfamily protein [Brucella abortus bv. 3 str. Tulya]
gi|261304170|gb|EEY07667.1| porin [Brucella pinnipedialis M163/99/10]
gi|261744380|gb|EEY32306.1| porin subfamily protein [Brucella suis bv. 3 str. 686]
gi|262765701|gb|EEZ11490.1| porin [Brucella melitensis bv. 3 str. Ether]
Length = 278
Score = 42.8 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 45/282 (15%), Positives = 87/282 (30%), Gaps = 37/282 (13%)
Query: 95 NAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW 154
+ G T + LK + + S V SS +E + + G R+G +S
Sbjct: 9 STGSETELGTLKTFTELRFNYAANNSGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESE 68
Query: 155 SDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYM 212
+ + G + +SY + G A ++ + G G
Sbjct: 69 FHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGNGFSAVIALEQ----GGDNDGGYTGT 124
Query: 213 ASYAIGKIRSTVTGG---------------YDAGTNNVAIRANISSPVSRAGTLDCGAVW 257
+Y I V GG YD+ A + ++ ++ +
Sbjct: 125 TNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAY 184
Query: 258 ASG--DNSYYDK--SKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK-- 311
+S + Y + ++V+ G K+ + ++ D ++A
Sbjct: 185 SSAATPDQNYGQWGGDWAVWGGLKYQATQKAAF--------NLQAAHDDWGKTAVTANVA 236
Query: 312 YMISSGLEAQASVAFND--NFVKKGVAIDKGVDLSVGLKKSF 351
Y + G V++ K VA D V ++SF
Sbjct: 237 YELVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRSF 278
>gi|254500343|ref|ZP_05112494.1| Porin subfamily [Labrenzia alexandrii DFL-11]
gi|222436414|gb|EEE43093.1| Porin subfamily [Labrenzia alexandrii DFL-11]
Length = 391
Score = 42.5 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 56/336 (16%), Positives = 97/336 (28%), Gaps = 72/336 (21%)
Query: 73 GNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDV----RALAFT 128
GN+ NS +D +L A G +L + +DV F
Sbjct: 71 GNSGPNS--WDSKADNSLRFRAR-----GYIRLDARTQTEFGLLRTYTDVWFTSNNSNFG 123
Query: 129 VPSSKLSVEELSLSMKGA---RLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHS 185
+ + + + G R G + + S D+R
Sbjct: 124 SAGGNTELWDAFVQLGGFTFGRTGSFFDYW-TGESWGSRIGQGLDSRANLAAY------- 175
Query: 186 FGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRS-------TVTGGYDAGTNNVAIR 238
GLS L + + Y+ Y+ G R V G+ ++
Sbjct: 176 TATFGNGLSASLSLESNTGERSPSTYIGGYSRGGFRYPALVANVNVVQGWGGAQLMGVVK 235
Query: 239 ANISSP---------------------VSRAGTLDCGAVWASGDNSYYDKSK-------- 269
AN +S + L AV+A G Y ++
Sbjct: 236 ANRASTAPVDSETAWAIGASARFNLPMLGSNTGLGLRAVYADGAIGYIHEAYGSYDATLN 295
Query: 270 -----------YSVFAGYKFDVAKSITISGGGQYFG-DINKTGKD--GWSAGISAKYMIS 315
+ V AG +I + GQY+ D T D WSA + +
Sbjct: 296 AAGTGLSNSTGWGVAAGITHYWTPTIYTAVQGQYWDIDTLNTANDLSAWSAHATLGWTPV 355
Query: 316 SGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
SGL + D G ++ + ++ ++++F
Sbjct: 356 SGLVIGTEFEYKDEDFGAGGVDNQDMTVTFRVQRTF 391
>gi|94312165|ref|YP_585375.1| porin [Cupriavidus metallidurans CH34]
gi|93356017|gb|ABF10106.1| outer membrane protein (porin) [Cupriavidus metallidurans CH34]
Length = 401
Score = 42.5 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 65/216 (30%), Gaps = 34/216 (15%)
Query: 144 KGARLGYYKSWSDEVNPVYSP----TTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQ 199
G S S + L + MS S ++ G G D
Sbjct: 183 GGLTGSLLYSTGSNTAGTASVYQGISGEVPGNYHLGREMSASVMYNGGPFSVGAIYDET- 241
Query: 200 KDGLKQVLGIGYMASYAIGKIR---------STVTGGYDAGTNNVAIRANISSPVSRAGT 250
+GI I + + V GY + T
Sbjct: 242 ------NVGIAAADGAKIRRTSIAGTYAFGPAKVFAGYRYAHAQG-----GAVLPGGVNT 290
Query: 251 LDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISA 310
+D A A+ N Y+ G + + +++++ G Y+ D TG D WS +S
Sbjct: 291 VDGAAKIANVSNLYW--------LGMGYQLTPALSLT-GAAYYQDFRNTGADPWSFVVST 341
Query: 311 KYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVG 346
Y S +A +VA+ N + S+G
Sbjct: 342 DYAFSKRTDAYFNVAYTKNKDGSTLGTSSASPGSLG 377
>gi|153007792|ref|YP_001369007.1| porin [Ochrobactrum anthropi ATCC 49188]
gi|151559680|gb|ABS13178.1| porin [Ochrobactrum anthropi ATCC 49188]
Length = 379
Score = 42.5 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 64/321 (19%)
Query: 72 NGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPS 131
+G+ + ++D + L ++ + G K FAE+ V
Sbjct: 82 DGSVDTRRNSWDNKARFTLRLSTASETDLGTLK-----------TFAETRYD-WGNGVEG 129
Query: 132 SKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDAR------GLDKMMSLSYRHS 185
+ S+ + + G R+G DE V P L + G + +SY +
Sbjct: 130 ASGSLRFAYIQLGGLRVGL-----DESAFVTFPGYLGDVINDDVILAGGYRTGLISYTFT 184
Query: 186 FG-LLKAGLSTDLLQKDGLKQVLG-----------IGYMASYAIGKIRSTVTGGYDAGTN 233
G A LS + D G + Y G + YDA
Sbjct: 185 GGNGFSAILSLEQGNNDDTDSAYGYNGVIKDYTPHVVGGLKYEGGWGKIAGVAAYDARNE 244
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSK----------------------YS 271
A + ++ ++ + S + Y ++ ++
Sbjct: 245 EWAGKVRADVNITDRFSVWAMGGYKSNKDQYIMQTDGNGHDIGQVRAISSFYGTWGGDWA 304
Query: 272 VFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND-NF 330
V+ G F + Y G + ++A + Y + G V++ +
Sbjct: 305 VWGGAAFKATDKAVFNAQLAY------DGTNTFAATANVAYEMVPGFTVTPEVSYTKWSD 358
Query: 331 VKKGVAIDKGVDLSVGLKKSF 351
K + V + ++SF
Sbjct: 359 SKSYLNGKDAVQGMIRFQRSF 379
>gi|260545642|ref|ZP_05821383.1| porin omp2b [Brucella abortus NCTC 8038]
gi|260097049|gb|EEW80924.1| porin omp2b [Brucella abortus NCTC 8038]
Length = 278
Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 45/282 (15%), Positives = 87/282 (30%), Gaps = 37/282 (13%)
Query: 95 NAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW 154
+ G T + LK + + S V SS +E + + G R+G +S
Sbjct: 9 STGSETELGTLKTFTELRFNYAANNSGVDGKYGNETSSGTVMEFAYIQLGGLRVGIDESE 68
Query: 155 SDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYM 212
+ + G + +SY + G A ++ + G G
Sbjct: 69 FHTFTGYLGDVINGDVISAGSYRTGKISYTFTGGNGFSAVIALEQ----GGDNDGGYTGT 124
Query: 213 ASYAIGKIRSTVTGG---------------YDAGTNNVAIRANISSPVSRAGTLDCGAVW 257
+Y I V GG YD+ A + ++ ++ +
Sbjct: 125 TNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAY 184
Query: 258 ASG--DNSYYDK--SKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK-- 311
+S + Y + ++V+ G K+ + ++ D ++A
Sbjct: 185 SSAATPDQNYGQWGGDWAVWGGLKYQATQKAAF--------NLQAAHDDWGKTAVTANVA 236
Query: 312 YMISSGLEAQASVAFND--NFVKKGVAIDKGVDLSVGLKKSF 351
Y + G V++ K VA D V ++SF
Sbjct: 237 YELVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRSF 278
>gi|47213034|emb|CAF95303.1| unnamed protein product [Tetraodon nigroviridis]
Length = 4362
Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 28/163 (17%)
Query: 46 VGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKL 105
VG + IT V +++S Q RY L N+E P+ + +N+ GD+ V+
Sbjct: 4018 VGATMKTITAVDADVDQSGQVRYSYLQSNSESQ------PLSSMININSETGDI--VSLQ 4069
Query: 106 KLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPT 165
+++ + QF + SS +SV L D + +P
Sbjct: 4070 SFDYEELKTFQFQVQATDS-GVPPLSSNVSVNVFILDEN-----------DNNPAILAPY 4117
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGL-STDLLQKDGLKQVL 207
+ + S+ Y G A + + DL D L
Sbjct: 4118 SEHGSVNS----ESIPYSAEAGYFVAKIRAVDL---DSGYNAL 4153
>gi|209963679|ref|YP_002296594.1| outer membrane receptor FepA [Rhodospirillum centenum SW]
gi|209957145|gb|ACI97781.1| ferric enterobactin receptor, putative [Rhodospirillum centenum SW]
Length = 745
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 253 CGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKY 312
+ +G + D +VFA V + ++ G ++ D + D WS ++A Y
Sbjct: 421 IPGIDNTGRSGKADADTSAVFAEANIAVTDRLMLTPGVRF--DHHTQFGDNWSPSLNASY 478
Query: 313 MISSGLEAQASVA 325
I GL+ + +A
Sbjct: 479 DIFDGLQVKGGIA 491
>gi|47213033|emb|CAF95302.1| unnamed protein product [Tetraodon nigroviridis]
Length = 4877
Score = 41.7 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 28/163 (17%)
Query: 46 VGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKL 105
VG + IT V +++S Q RY L N+E P+ + +N+ GD+ V+
Sbjct: 141 VGATMKTITAVDADVDQSGQVRYSYLQSNSESQ------PLSSMININSETGDI--VSLQ 192
Query: 106 KLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPT 165
+++ + QF + SS +SV L D + +P
Sbjct: 193 SFDYEELKTFQFQVQATDS-GVPPLSSNVSVNVFILDEN-----------DNNPAILAPY 240
Query: 166 TLYNDARGLDKMMSLSYRHSFGLLKAGL-STDLLQKDGLKQVL 207
+ + S+ Y G A + + DL D L
Sbjct: 241 SEHGSVNS----ESIPYSAEAGYFVAKIRAVDL---DSGYNAL 276
>gi|260168395|ref|ZP_05755206.1| Outer membrane protein IIIA precursor [Brucella sp. F5/99]
Length = 244
Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 37/255 (14%)
Query: 122 VRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSL 180
V SS +E + + G R+G +S + + G + +
Sbjct: 2 VDGKYGNETSSGTVMEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKI 61
Query: 181 SYRHSFG-LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG------------ 227
SY + G A ++ + G G +Y I V GG
Sbjct: 62 SYTFTGGNGFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAG 117
Query: 228 ---YDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDV 280
YD+ A + ++ ++ ++S + Y + ++V+ G K+
Sbjct: 118 VVAYDSVIEEWAAKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQA 177
Query: 281 AKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVA 336
+ ++ D ++A Y + G V++ K VA
Sbjct: 178 TQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVA 229
Query: 337 IDKGVDLSVGLKKSF 351
D V ++SF
Sbjct: 230 EDNAWGGIVRFQRSF 244
>gi|313206054|ref|YP_004045231.1| tonb-dependent receptor [Riemerella anatipestifer DSM 15868]
gi|312445370|gb|ADQ81725.1| TonB-dependent receptor [Riemerella anatipestifer DSM 15868]
Length = 685
Score = 41.3 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 250 TLDCGAVW-ASGDNSYYDKSKYSVF---AGYKFDVAKSITISGGGQYFGDINKTGKDGWS 305
TL GA++ + Y +K + A + I G +Y D N W+
Sbjct: 329 TLGAGAIFQGVEASRYSNKKEMHQLYGLAQANYKATDRWQILAGVRY--DYNNVFGAQWN 386
Query: 306 AGISAKYMISSGLEAQASV 324
++ + + L +ASV
Sbjct: 387 PKLATDFKFTEALTLRASV 405
>gi|261222767|ref|ZP_05937048.1| porin [Brucella ceti B1/94]
gi|260921351|gb|EEX88004.1| porin [Brucella ceti B1/94]
Length = 222
Score = 41.3 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 35/221 (15%)
Query: 130 PSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG- 187
P++ S + + + G R+G +S + + G + +SY + G
Sbjct: 8 PAAAPSWKFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGN 67
Query: 188 LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG---------------YDAGT 232
A ++ + G G +Y I V GG YD+
Sbjct: 68 GFSAVIALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVI 123
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITISG 288
A + ++ ++ ++S N Y + ++V+ G KF + T
Sbjct: 124 EEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAKFIATEKATF-- 181
Query: 289 GGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN 327
++ D ++A Y + G V++
Sbjct: 182 ------NLQAAHDDWGKTAVTANVAYQLVPGFTVTPEVSYT 216
>gi|254525328|ref|ZP_05137383.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
gi|219722919|gb|EED41444.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
Length = 285
Score = 41.3 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 200 KDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANI-SSPVSRAGTLDCGAVWA 258
+ + + Y + + + D T ++ ++ + VS G D G V+
Sbjct: 123 GENVPAGSFVKGELKYQVASLVYDYSV-VDTDTFDLGLQIGGEYAKVSTKGYADLGTVYE 181
Query: 259 SG-DNSYYDKSKYSVFAGYKFDVAKSITISGGGQY----FGDINKTGKDGWSAGISAKYM 313
N D V A F ++ I+ GQY +G + D A Y
Sbjct: 182 GQFLNEKADGIAPVVGARMTFTPSERWMITLQGQYLNTRWGSFDDYKGDLSRANAIVDYR 241
Query: 314 ISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
+ A + V K KG D +VGLK+ F
Sbjct: 242 FTKNFGVFAGYDWFKLDVDK-----KGSDGTVGLKQEF 274
>gi|197104930|ref|YP_002130307.1| TonB-dependent receptor [Phenylobacterium zucineum HLK1]
gi|196478350|gb|ACG77878.1| TonB-dependent receptor [Phenylobacterium zucineum HLK1]
Length = 829
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 16/155 (10%)
Query: 172 RGLDKMMSLSYRHSFGLLKAGLSTDL-LQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDA 230
R Y G+ L+ + + G ASY G+ S
Sbjct: 402 REARLNADFVYPVETGMFAEPLNVAFGAEYRRETFEIKAGEPASYQAGRFASL------T 455
Query: 231 GTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGG 290
+ I G + + +S ++ + + +V + +T+
Sbjct: 456 DPDTGRIIGLAVGSSGFPG-------YTPASAGAFSRSNWAAYVDLETEVVERLTVGAAA 508
Query: 291 QYFGDINKTGKDGWSAGISAKYMISSGLEAQASVA 325
+Y + W ++A+Y + GL + SV
Sbjct: 509 RYEDFSDFGSTFNWK--LTARYELFDGLALRGSVN 541
>gi|194367291|ref|YP_002029901.1| hypothetical protein Smal_3519 [Stenotrophomonas maltophilia
R551-3]
gi|194350095|gb|ACF53218.1| conserved hypothetical protein [Stenotrophomonas maltophilia
R551-3]
Length = 272
Score = 40.5 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 272 VFAGYKFDVAKSITISGGGQY----FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFN 327
V A F ++ I+ GQY +G + D A Y + A +
Sbjct: 183 VGARLSFTPSEKWMITLQGQYLNTRWGSFDDYKGDLSRANAIVDYRFTKNFGVFAGYDWF 242
Query: 328 DNFVKKGVAIDKGVDLSVGLKKSF 351
K A KG D ++GLK+ F
Sbjct: 243 -----KLDADKKGSDGTIGLKQEF 261
>gi|306845242|ref|ZP_07477818.1| outer membrane protein 2b [Brucella sp. BO1]
gi|206596724|emb|CAQ68392.1| outer membrane protein 2b [Brucella sp. BO1]
gi|306274401|gb|EFM56208.1| outer membrane protein 2b [Brucella sp. BO1]
Length = 375
Score = 40.5 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 46/323 (14%), Positives = 99/323 (30%), Gaps = 49/323 (15%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G+N ++ +D + L V+ G T + LK + + S
Sbjct: 64 RYDVKGGDNVYSGTDRKGWDKGARFALRVS--TGSETELGTLKTYTELRFNYAANNSRED 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
+ S ++ + + G R+G +S + + G + +SY
Sbjct: 122 G-YYGTNSDGTVMQFAYIQLGGLRVGIDESEFQTFTGYLGDVINDDVISAGTYRTGKISY 180
Query: 183 RHSFG-LLKAGLSTDLLQK----------DGLKQVLG------------IGYMASYAIGK 219
+ G A ++ + D + + YA G
Sbjct: 181 TFTGGNGFSAVIALEQGGDNDGGYTPVFRDSQGNEISGQGYQIDGYMPDVVGGLKYAGGW 240
Query: 220 IRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAG 275
YD+ A + ++ ++ ++S + Y + ++V+ G
Sbjct: 241 GSIAGVVAYDSVIEEWATKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGG 300
Query: 276 YKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN--DNFV 331
K+ + ++ D ++A Y + G V++ N
Sbjct: 301 LKYQATQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTITPEVSYTKFSNEW 352
Query: 332 KKGVAIDKGVDLSVGL---KKSF 351
K+ + D D G+ ++SF
Sbjct: 353 KRELGNDTLDDAWGGIVRFQRSF 375
>gi|290559812|gb|EFD93136.1| hypothetical protein BJBARM5_0148 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 502
Score = 40.1 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 18 SYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEF 77
+YS+S+ Y RG S N +RN+S N++ + K G+L KSL Y KLNG N
Sbjct: 275 NYSQSYNYSRGYLSKYLLNYSRNQS-----NIISGLPKFMGNLNKSL---YSKLNGMNIS 326
Query: 78 NSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRAL 125
S + G L A G++ + + ++ M +++ L
Sbjct: 327 ISGGLRGNIHGGL---AGFGNIGRKIQQQFNNTEISIMNNIKANQNRL 371
>gi|290558825|gb|EFD92218.1| hypothetical protein BJBARM5_1082 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 502
Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 18 SYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEF 77
+YS+S+ Y RG S N +RN+S N++ + K G+L KSL Y KLNG N
Sbjct: 275 NYSQSYNYSRGYLSKYLLNYSRNQS-----NIISGLPKFMGNLNKSL---YSKLNGMNIS 326
Query: 78 NSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRAL 125
S + G L A G++ + + ++ M +++ L
Sbjct: 327 ISGGLRGNIHGGL---AGFGNIGRKIQQQFNNTEISIMNNIKANQNRL 371
>gi|265983763|ref|ZP_06096498.1| Omp2b porin [Brucella sp. 83/13]
gi|306837503|ref|ZP_07470378.1| Omp2b porin [Brucella sp. NF 2653]
gi|8810228|gb|AAF80105.1| Omp2b porin [Brucella suis]
gi|264662355|gb|EEZ32616.1| Omp2b porin [Brucella sp. 83/13]
gi|306407395|gb|EFM63599.1| Omp2b porin [Brucella sp. NF 2653]
Length = 375
Score = 40.1 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 100/323 (30%), Gaps = 49/323 (15%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVR 123
RY G++ ++ +D + L V+ G T + LK + + + S
Sbjct: 64 RYDVKGGDDVYSGTDRKGWDKSARFALRVS--TGSETELGTLKTFTELRFNYSASNSRED 121
Query: 124 ALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSY 182
+ S ++ + + G R+G +S + + G + +SY
Sbjct: 122 G-YYGTNSDGTVMQFAYIQLGGLRVGIDESEFQTFTGYLGDVINDDVISAGTYRTGKISY 180
Query: 183 RHSFG-LLKAGLSTDLLQKDGLK-------------QVLG---------IGYMASYAIGK 219
+ G A ++ + + G + YA G
Sbjct: 181 TFTGGNGFSAVIALEQGGDNDGGYTPVFKDSQGREINGRGYQIDGYMPDVVGGLKYAGGW 240
Query: 220 IRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAG 275
YD+ A + ++ ++ ++S + Y + ++V+ G
Sbjct: 241 GSIAGVVAYDSVIEEWATKVRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGG 300
Query: 276 YKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFN--DNFV 331
K+ + ++ D ++A Y + G V++ N
Sbjct: 301 LKYQATQKAAF--------NLQAAHDDWGKTAVTANVAYELVPGFTITPEVSYTKFSNEW 352
Query: 332 KKGVAIDKGVDLSVGL---KKSF 351
K+ + D D G+ ++SF
Sbjct: 353 KRELGNDTLDDAWGGIVRFQRSF 375
>gi|315022367|gb|EFT35395.1| TonB-dependent receptor [Riemerella anatipestifer RA-YM]
gi|325336505|gb|ADZ12779.1| tonB-dependent vitamin B12 receptor [Riemerella anatipestifer
RA-GD]
Length = 685
Score = 39.8 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 250 TLDCGAVW-ASGDNSYYDKSKYSVF---AGYKFDVAKSITISGGGQYFGDINKTGKDGWS 305
TL GA++ + Y +K + A + I G +Y D N W+
Sbjct: 329 TLGAGAIFQGVEASRYTNKKEMHQLYGLAQANYKATDRWQILAGVRY--DYNNVFGAQWN 386
Query: 306 AGISAKYMISSGLEAQASV 324
++ + + L +ASV
Sbjct: 387 PKLATDFKFTEALILRASV 405
>gi|54303522|ref|YP_133515.1| transport protein [Photobacterium profundum SS9]
gi|46916952|emb|CAG23715.1| hypothetical transport protein [Photobacterium profundum SS9]
Length = 500
Score = 39.8 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 212 MASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYS 271
A A+G + + GG+ A A RA + V AS N S
Sbjct: 53 GAFGAVGPV-FSAVGGFVADKYIGAFRAVYIGYTAYLAGFVLLGVGASDLNV-----PLS 106
Query: 272 VFAGYKFDVAKSITIS-GGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNF 330
+FA A+ ++ + ++T +D + G++ Y I + L + S + F
Sbjct: 107 IFAIALIGYARGLSATCPTVLLGNSYSETNRDAFQQGLTVNYSI-NNLGS-FSAKYLFPF 164
Query: 331 VKKGVA 336
+ +A
Sbjct: 165 LIAYLA 170
>gi|90409569|ref|ZP_01217586.1| hypothetical transport protein [Photobacterium profundum 3TCK]
gi|90328922|gb|EAS45179.1| hypothetical transport protein [Photobacterium profundum 3TCK]
Length = 395
Score = 39.8 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 212 MASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYS 271
A A+G + + GG+ A A RA + V ASG N S
Sbjct: 53 GAFGAVGPV-FSAVGGFVADKYIGAFRAVYIGYTAYLAGFVLLGVGASGLNV-----PLS 106
Query: 272 VFAGYKFDVAKSITIS-GGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNF 330
+FA A+ ++ + ++T ++ + G++ Y I + L + S + F
Sbjct: 107 IFAIALIGYARGLSATCPTVLLGNSYSETNREAFQQGLTVNYSI-NNLGS-FSAKYLFPF 164
Query: 331 VKKGVA 336
+ +A
Sbjct: 165 LIAYLA 170
>gi|261757856|ref|ZP_06001565.1| porin omp2b [Brucella sp. F5/99]
gi|261737840|gb|EEY25836.1| porin omp2b [Brucella sp. F5/99]
Length = 229
Score = 39.8 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 37/241 (15%)
Query: 136 VEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGLDKMMSLSYRHSFG-LLKAGL 193
+E + + G R+G +S + + G + +SY + G A +
Sbjct: 1 MEFAYIQLGGLRVGIDESEFHTFTGYLGDVINDDVISAGSYRTGKISYTFTGGNGFSAVI 60
Query: 194 STDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG---------------YDAGTNNVAIR 238
+ + G G +Y I V GG YD+ A +
Sbjct: 61 ALEQ----GGDNDGGYTGTTNYHIDGYMPDVVGGLKYAGGWGSIAGVVAYDSVIEEWAAK 116
Query: 239 ANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYKFDVAKSITISGGGQYFG 294
++ ++ ++S + Y + ++V+ G K+ +
Sbjct: 117 VRGDVNITDQFSVWLQGAYSSAATPDQNYGQWGGDWAVWGGLKYQATQKAAF-------- 168
Query: 295 DINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKKGVAIDKGVDLSVGLKKS 350
++ D ++A Y + G V++ K VA D V ++S
Sbjct: 169 NLQAAHDDWGKTAVTANVAYELVPGFTVTPEVSYTKFGGEWKNTVAEDNAWGGIVRFQRS 228
Query: 351 F 351
F
Sbjct: 229 F 229
>gi|225012172|ref|ZP_03702609.1| translation initiation factor IF-2 [Flavobacteria bacterium
MS024-2A]
gi|225003727|gb|EEG41700.1| translation initiation factor IF-2 [Flavobacteria bacterium
MS024-2A]
Length = 916
Score = 39.8 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 28 GKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87
GKTS++ R N AG+ G + HI G +LEK + + G+ F ++
Sbjct: 429 GKTSLLDYIREENVIAGESGGITQHIGAYGVTLEKGQKITFLDTPGHEAFTAM------- 481
Query: 88 GNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVP 130
A VT +A + +A DD + Q E+ A A VP
Sbjct: 482 -----RARGAQVTDIAIIVVAADDDIMPQTKEAISHAQAAGVP 519
>gi|628578|pir||S43961 hypothetical protein (clone pX177) - Rhizobium sp. (strain NGR234)
(fragment)
Length = 52
Score = 39.4 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 135 SVEELSLSMKGARLGYYKSWSDE 157
++E + + G ++G + SW D+
Sbjct: 28 KLDEAYIQLGGFKVGRFYSWWDK 50
>gi|190575950|ref|YP_001973795.1| hypothetical protein Smlt4119 [Stenotrophomonas maltophilia K279a]
gi|190013872|emb|CAQ47510.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
Length = 280
Score = 39.4 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 18/161 (11%)
Query: 200 KDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANI-SSPVSRAGTLDCGAVWA 258
+ + + Y + + + D T ++ ++ + VS G D G V+
Sbjct: 118 GENVPAGSFVKGELKYQVASLVYDYSV-VDTDTFDLGLQIGGEYAKVSTKGYADLGTVYE 176
Query: 259 SGDNSYYDKSKYSVF----AGYKFDVAKSITISGGGQY----FGDINKTGKDGWSAGISA 310
+ D+ V A F ++ I+ GQY +G + D A
Sbjct: 177 ---GQFLDEKADGVAPVVGARMTFTPSERWMITLQGQYLNTRWGSFDDYKGDLSRANAIV 233
Query: 311 KYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
Y + A + V K KG D +VGLK+ F
Sbjct: 234 DYRFTKNFGVFAGYDWFKLDVDK-----KGSDGTVGLKQEF 269
>gi|328949123|ref|YP_004366460.1| hypothetical protein Tresu_2300 [Treponema succinifaciens DSM 2489]
gi|328449447|gb|AEB15163.1| hypothetical protein Tresu_2300 [Treponema succinifaciens DSM 2489]
Length = 408
Score = 39.4 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 266 DKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVA 325
+K+ +++ AGY+ A ++++GG + F + K W G Y++ GL V
Sbjct: 273 NKAYFALNAGYQVSDAMKVSLAGGVKLFKNSGFDPK--WGIGAGVDYVVMDGLTLNTDVR 330
Query: 326 FNDN--FVKKGVAIDKGVDLS---VGLKKSF 351
+ + K G+ +D D VG+ K F
Sbjct: 331 YISETKYSKNGIKVDGKDDAVSFLVGVSKGF 361
>gi|73538318|ref|YP_298685.1| porin [Ralstonia eutropha JMP134]
gi|72121655|gb|AAZ63841.1| Porin, Gram-negative type [Ralstonia eutropha JMP134]
Length = 358
Score = 39.4 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 29/210 (13%), Positives = 61/210 (29%), Gaps = 31/210 (14%)
Query: 144 KGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGL 203
G + ++ V D ++ G G++ D
Sbjct: 159 GGLTAQAFYAFQSNGTEVAGSNVYGRDFGAFVN-------YATGPFSVGVAYDDAHVGTP 211
Query: 204 KQVLGI--GYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGD 261
+ + + + GY A + G +G
Sbjct: 212 ANQAPLIRRASVAGTYAAGAARLYAGYRL--------AKAYGGAALPG----AQTANAGS 259
Query: 262 NSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQ 321
N Y+ G + + + +++ G Y+ D KTG D W ++ Y +S +
Sbjct: 260 NLYW--------LGIVYKLTPAFSLT-GTAYYQDFRKTGSDPWQFALNGDYSLSKRTDLY 310
Query: 322 ASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
S+++ N + ++ G + G F
Sbjct: 311 VSMSYALNKENSQLGVN-GFNSGTGANAVF 339
>gi|160894170|ref|ZP_02074948.1| hypothetical protein CLOL250_01724 [Clostridium sp. L2-50]
gi|156864203|gb|EDO57634.1| hypothetical protein CLOL250_01724 [Clostridium sp. L2-50]
Length = 635
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 12/128 (9%)
Query: 196 DLLQKDGLKQVLGIG-YMASYAIGKIRSTVTG---GYDAGTNNVAIRANISSPVSRAGTL 251
D +Q G G+ Y+ S IG S + G GY +G +R ++ GT+
Sbjct: 166 DDIQIMGTYDGFGMEIYLNSAKIGAESSQIQGTGKGYASGEIYNLLRIQLAFGDGDIGTV 225
Query: 252 DCGAVWASGDNSYYDKSKYSVF--AGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGIS 309
+ D ++++ + Y +V K TI + +KTG +G
Sbjct: 226 TVNGKAITLPEGTKDTVEFTIAPASEYVIEVTKKPTIIPRTIIWAK-DKTGNNGLK---- 280
Query: 310 AKYMISSG 317
Y +
Sbjct: 281 -DYELLKN 287
>gi|332290665|ref|YP_004429274.1| hypothetical protein Krodi_0015 [Krokinobacter diaphorus 4H-3-7-5]
gi|332168751|gb|AEE18006.1| hypothetical protein Krodi_0015 [Krokinobacter diaphorus 4H-3-7-5]
Length = 592
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 11/146 (7%)
Query: 208 GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDN---SY 264
G M + + Y A ++ N S +A+G++ +Y
Sbjct: 389 GYLGMKGKLSEALSYNLRASYTAESDKALFIHNPYSQSGN--GFGANG-YANGNSFSIAY 445
Query: 265 YDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGW-----SAGISAKYMISSGLE 319
D + VFA FDV + + GQY+ + ++ W A + A Y I+
Sbjct: 446 DDINTVGVFAELNFDVNANFKMKVNGQYYTYNTDSQQEAWNLPDLQASVFADYQITEKWF 505
Query: 320 AQASVAFNDNFVKKGVAIDKGVDLSV 345
A ++ F + D L
Sbjct: 506 AGVNLFFMGERNDLVSSNDPADLLIT 531
>gi|260060675|ref|YP_003193755.1| translation initiation factor IF-2 [Robiginitalea biformata
HTCC2501]
gi|88784805|gb|EAR15974.1| translation initiation factor IF-2 [Robiginitalea biformata
HTCC2501]
Length = 878
Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 28 GKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87
GKTS++ R N AG+ G + HI G SLE + + G+ F ++
Sbjct: 391 GKTSLLDYIREENVIAGESGGITQHIGAYGVSLENGQKIAFLDTPGHEAFTAM------- 443
Query: 88 GNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVP 130
A VT +A + +A DD + Q E+ A A VP
Sbjct: 444 -----RARGAQVTDIAIIVIAADDDIMPQTKEAISHAQAAGVP 481
>gi|78186502|ref|YP_374545.1| hypothetical protein Plut_0619 [Chlorobium luteolum DSM 273]
gi|78166404|gb|ABB23502.1| hypothetical protein Plut_0619 [Chlorobium luteolum DSM 273]
Length = 355
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 50/286 (17%), Positives = 96/286 (33%), Gaps = 51/286 (17%)
Query: 88 GNLEVNANAGDVTG--------VAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEEL 139
G +EV AN+ D G +A L+L ++ L+ V S + VE+
Sbjct: 60 GFVEVEANSVDTEGKKSTTDITLATLELGLEASLNPWLTAYGVLLYEQGENSDNILVEQA 119
Query: 140 SLSMKGARLGYYKSWSD--------EVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKA 191
+ MK ++ E + + P TL + SL + G L+
Sbjct: 120 YIRMKSESSPFFAEVGRLTQSFGTFESSMISDPMTL--ELGQTRLHASLKAGYEEGGLQG 177
Query: 192 GLST--DLLQKDGLKQVLGIGYMASYA--IGKIRSTVTGGY-----DAG-TNNVAIRANI 241
LS +QK G ++ + + + R + G + D + + N
Sbjct: 178 SLSVFKGEVQKTGESEINSLVAFIGWQKELDSFRYGIGGSWTNNVADTDGLKDSFVVGNN 237
Query: 242 SS-----------PVSRAGTLDCGAVW-------ASGDNSYYDKSKYSVFAGYKFDVAKS 283
++ ++ G + + G+NS + +SV AGY F+ +
Sbjct: 238 TTTTDFVGGWSVNAMAGFGPFELRGEYLGACDNFTDGENSGRQPAAWSVEAGYAFEAPLN 297
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329
+ + +Y G + D G + + ++ DN
Sbjct: 298 LAL----RYEGSDDFGTNDS-RYGATLGWDVTDDACLAIEYQRADN 338
>gi|258592445|emb|CBE68754.1| conserved exported protein of unknown function [NC10 bacterium
'Dutch sediment']
Length = 458
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 23/150 (15%)
Query: 213 ASYAIGK--IRSTVTGGYDAGTN---NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDK 267
+ G + + + D N I + TL + + +++D
Sbjct: 294 LGGSWGAETVSAALDPARDVNRNGPKRGLIDFIATYKPIAPLTLTLNYDYGRQEEAFFDD 353
Query: 268 SK---YSVFAGYK-FDVAKSITISGGGQYFGDINKT---------GKDGWSAGISAKYMI 314
+ A Y +D+ +T+ G+YF D + W ++ +Y +
Sbjct: 354 GDTAVWHAVAAYAMYDITDRLTVGVRGEYFKDQDGFRLPGATAGKNLSVWGTTLTGRYKL 413
Query: 315 SSGLEAQASVAFNDNFVKKGVAI---DKGV 341
L A ++ + + + G I DKG
Sbjct: 414 FDHLFA--NLEYRHDQARHGQEIFDRDKGD 441
>gi|538279|gb|AAA98536.1| ferric enterobactin receptor [Bordetella pertussis]
Length = 735
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 82/243 (33%), Gaps = 49/243 (20%)
Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW-------SDEVNPVYSPTTLYNDARG 173
D+ AL S +V+ L M +R G + SD + +Y T N
Sbjct: 261 DLSALFSWKADSHNTVD---LDMGFSRQGNLFAGDTMNNANSDFSDSLYGKET--NAMYR 315
Query: 174 LDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT- 232
+ ++ + +G +A + D + +A G + GGYD
Sbjct: 316 ENYALTHRGVYDWGTSRASVGYD-----YTRNARQREGLAGGPEGAPTA---GGYDTARL 367
Query: 233 -----------------NNVA------IRANISSPVSRAGTLDCGAVWASGDNSYYDKSK 269
VA +R ++ P T GA+ + KS+
Sbjct: 368 KNWRAAAEASVPFHLGFEQVATVGVEWLRESLEDPAGTRQTYTGGAIGGTAPADRDPKSR 427
Query: 270 ---YSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAF 326
Y++FA ++ + ++ G + D N WS ++A Y ++ L+ + A+
Sbjct: 428 QTSYALFAEDNIEIDERTMLTPGVRL--DHNSEFGSNWSPSLNASYAVTDALKGGIARAY 485
Query: 327 NDN 329
Sbjct: 486 KAP 488
>gi|116695022|ref|YP_840598.1| outer membrane protein (porin) [Ralstonia eutropha H16]
gi|113529521|emb|CAJ95868.1| outer membrane protein (porin) [Ralstonia eutropha H16]
Length = 365
Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 34/239 (14%)
Query: 118 AESDVRALAFTVPSSKLSVEELSLSMKGA---RLGYYKSWSDEVNPVYSPTTLYNDARGL 174
A +D + P + + + S+ + V +
Sbjct: 137 AIADRYGILSIAPEFGARADNAVKYVGKFGRLTAQAFYSFQANGSEVAGSNVFGRNFGAF 196
Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMAS--YAIGKIRSTVTGGYDAGT 232
++ G G++ D + S + V GY
Sbjct: 197 VN-------YASGPFALGVAYDDAHVGTPSNQAPVLRRVSVAGTYAVSDAKVYVGYRL-- 247
Query: 233 NNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY 292
A G + A G N Y+ G + + ++ +++ G Y
Sbjct: 248 ------AKAYDGAMLPGAQEANA----GSNLYW--------LGLAYKLTQAFSLT-GTAY 288
Query: 293 FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
+ D +TG D W ++ Y++S + ASV++ N + ++ G + G F
Sbjct: 289 YQDFRQTGSDPWQFVLTGDYLLSKRTDLYASVSYALNKDNSALGVN-GFNSGSGTSAVF 346
>gi|302384346|ref|YP_003820169.1| hypothetical protein Bresu_3240 [Brevundimonas subvibrioides ATCC
15264]
gi|302194974|gb|ADL02546.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
15264]
Length = 255
Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 16/170 (9%)
Query: 170 DARGLDKMMSLSYRHSFGLLKAGL---STDLLQKDGLKQVLGIGYMASYAIGKIRSTV-- 224
G D +S + G G + D + + + +
Sbjct: 69 SQTGEDPALSGGIDLTSGSFYVGAWASNVAFPGDDDTDAEIDLYGGVRPEVAGFNLDLGV 128
Query: 225 TGGYDAGTNNVA------IRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKF 278
G + A I+A S V TL W+ + V A F
Sbjct: 129 VGYLYTNQPDGADYSYAEIKAAASRAVG-PATLGAAVYWSPDFFGASEDEATYVEANAAF 187
Query: 279 DVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND 328
A T+SG + W+AG++ Y ++ L V ++D
Sbjct: 188 SPADRWTVSGALGRQFVSSDFDYTTWNAGVT--YALTDRLG--LDVRYSD 233
>gi|87201048|ref|YP_498305.1| TonB-dependent receptor [Novosphingobium aromaticivorans DSM 12444]
gi|87136729|gb|ABD27471.1| TonB-dependent receptor [Novosphingobium aromaticivorans DSM 12444]
Length = 904
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 203 LKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAI--RANISSPVSRAGTLDCGAVWASG 260
K + Y T +GG D+ I A + V + A + S
Sbjct: 448 QKNEVNNDYSIHGLDQIAGYTQSGGGDSNPEGFGIPTTAGGTMVVGSP-AVKRDAFYMSE 506
Query: 261 DNSYYDKSKYSVFAGYKFDVAKSITISGGGQYF 293
N Y++ Y++FA +++ ++ ++GG +YF
Sbjct: 507 QNQYWND--YALFAEGHYNITPTLKLTGGIRYF 537
>gi|160875163|ref|YP_001554479.1| TonB-dependent receptor [Shewanella baltica OS195]
gi|160860685|gb|ABX49219.1| TonB-dependent receptor [Shewanella baltica OS195]
gi|315267357|gb|ADT94210.1| TonB-dependent receptor [Shewanella baltica OS678]
Length = 867
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 46/290 (15%), Positives = 96/290 (33%), Gaps = 28/290 (9%)
Query: 46 VGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKL 105
+G HI ++ LE + Y K G AY+ P ++V ++ ++
Sbjct: 289 IGTTFNHIYRLDNGLEFFAEGMYQKNTG------SAYEAPAGYTVDVAGDSANIPQY--- 339
Query: 106 KLAVDDVLSMQFAESDVRALAFTVPSSKLSV--EELSLSMKGARLGYYKSWSDEVNPVYS 163
V D+ + + SDV + P ++ + + G R +
Sbjct: 340 ---VHDIDMLDGSVSDVITVRTRFPERRVQEYDTQSYRVLAGLRGELADWSWETAASYGK 396
Query: 164 PTTLYNDARG---LDKMMSLSYRHSFGLLKAG-----LSTDLLQKDGLKQVLGIGYMASY 215
T N+ G K+ + F G L+ G+++ +
Sbjct: 397 STNEINNVAGYMNATKLDAAVAADEFNPFNLGRDSSAAQIAALRDPGIRKGESEVLSLDF 456
Query: 216 AIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD--CGAVWASGDNSYYDKSKYSVF 273
I + G + +R ++ + AS + D+++Y+V+
Sbjct: 457 NISGDLFALPAGAVSSVFGGELRKEQIFDRPSINAVNNEIIGLGASDAEA--DRTQYAVY 514
Query: 274 AGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQAS 323
+ F + ++ + +Y + G D + IS +Y L +AS
Sbjct: 515 GEFNFPITDTLDVIAALRY-DHYSDFGGDV-NPKISMRYRPLEDLVLRAS 562
>gi|163842910|ref|YP_001627314.1| Outer membrane protein IIIA precursor [Brucella suis ATCC 23445]
gi|155369809|emb|CAM98691.1| truncated outer membrane protein 2a [Brucella suis]
gi|155369813|emb|CAM98693.1| truncated outer membrane protein 2a [Brucella suis]
gi|163673633|gb|ABY37744.1| Outer membrane protein IIIA precursor [Brucella suis ATCC 23445]
Length = 250
Score = 38.2 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 14/174 (8%)
Query: 67 RYHKLNGNNEFNSLA---YDIPVKGNLEVNANA----GDVTGVAKLKLAVDDVLSMQFAE 119
RY G++ + +D + L N N+ G + +L+ S +
Sbjct: 64 RYDVKGGDDVYTGSDRKGWDKGARFALMFNTNSETELGTLGTYTQLRFNYTSNNSRHDGQ 123
Query: 120 ----SDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDE-VNPVYSPTTLYNDARGL 174
SD R +A S+ ++ +++ G ++G +S + A G
Sbjct: 124 YGDFSDDRDVADGGVSTGTDLQFAYITLGGFKVGIDESEFHTFTGYLGDVINDDVVAAGS 183
Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGY 228
+ ++Y + G + + + + I + +G ++ GG+
Sbjct: 184 YRTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKY--AGGW 235
>gi|116696083|ref|YP_841659.1| outer membrane protein (porin) [Ralstonia eutropha H16]
gi|113530582|emb|CAJ96929.1| outer membrane protein (porin) [Ralstonia eutropha H16]
Length = 390
Score = 38.2 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 47/218 (21%), Positives = 68/218 (31%), Gaps = 46/218 (21%)
Query: 169 NDARGLDKMMSLSYRHSFGLLKA------GLSTDLLQKDGLKQVLGIGYMASYAIGKIRS 222
+ A ++ Y FG L A G + K G SYA G
Sbjct: 184 DSAFNGRADNAIKYTGKFGGLTATGFYSFGRDNNGEVPGEPKVARNFGGGLSYAAGGFS- 242
Query: 223 TVTGGYDAGTNNVAI---RANISSPVSRAGTLDCGAVWA-----------------SGDN 262
V YD RA + V A V+A + N
Sbjct: 243 -VGAAYDQYQGATVTLQDRAAKRAAVGTAYAFGGAKVFAGYRWLKDDGVSSASAISTRSN 301
Query: 263 SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQA 322
Y+ A Y+F A +T G Y+ D + D W +SA Y +S +
Sbjct: 302 VYWA------GAQYRFTPAFQLT---GAAYYNDTRNSDADPWMFVLSADYSLSKRTDVYL 352
Query: 323 SVAFNDNF---------VKKGVAIDKGVDLSVGLKKSF 351
+V ++ N V VA + +VGL+ F
Sbjct: 353 NVGYSKNKSGSALGLNGVGTVVAGENQTGATVGLRHRF 390
>gi|83859229|ref|ZP_00952750.1| TonB-dependent receptor [Oceanicaulis alexandrii HTCC2633]
gi|83852676|gb|EAP90529.1| TonB-dependent receptor [Oceanicaulis alexandrii HTCC2633]
Length = 910
Score = 37.8 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 64/219 (29%), Gaps = 25/219 (11%)
Query: 85 PVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMK 144
P G + V+ N A L +D F + + A S + + + +
Sbjct: 282 PHDGQIAVDGNVNTQLDTAGLSAQIDHEFD-GFTFTSITAYRTYDESQNIDADFSDIDLL 340
Query: 145 GARL--GYYKSWSDE---VNPVYSPT----TLYNDARGLDKMMSLSYRHSFGLLKAGLST 195
GAR Y S++ E + + L+ L Y
Sbjct: 341 GARNIDNEYNSFTQEFRFTSNGGQFIDWMFGGFYYKNELEFNQRLVYGADTKAFF----- 395
Query: 196 DLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANI--SSPVSRAGTLDC 253
L G L + G + A S P+ AG
Sbjct: 396 -DLASAGQVADLVAAFGLPAGTGGVTL-------TEFLVGANNQLGVNSVPLLPAGGYLQ 447
Query: 254 GAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQY 292
+N YD + +S FA + + +T++ GG+Y
Sbjct: 448 EGDALQRENYQYDTTSWSAFAQFDINFTDRLTLTLGGRY 486
>gi|148553653|ref|YP_001261235.1| TonB-dependent receptor [Sphingomonas wittichii RW1]
gi|148498843|gb|ABQ67097.1| TonB-dependent receptor [Sphingomonas wittichii RW1]
Length = 761
Score = 37.8 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 256 VWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGD 295
V ++ YYD ++ FA + + +T++GG +Y D
Sbjct: 425 VVSAESGGYYDYKNWAAFAQLGYKLTDKLTLTGGLRYTQD 464
>gi|192290928|ref|YP_001991533.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
TIE-1]
gi|192284677|gb|ACF01058.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
TIE-1]
Length = 563
Score = 37.8 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK-----LSVEE 138
PVKG L V ++AG+ ++ + + + L V + +
Sbjct: 311 APVKGQLRVVSSAGEPLNPEVIRWFAEHLAAPIHDHYGQTELGMVVNNHHRLRHTVHPGS 370
Query: 139 LSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL----S 194
L+M G R+ S+E+ P + R S ++ ++ G
Sbjct: 371 AGLAMPGFRVAVLDEHSNELPPNVPGVLSVDLKRSPLMWFSGYWQQETPAIEGGYYRTGD 430
Query: 195 TDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT---NNVAIRANISSPVSRA 248
T L+ DG +G + G G +D + + A+ ++ + +
Sbjct: 431 TVELEPDGSISFVGRADDVITSSG----YRIGPFDVESALIEHAAV--IEAAVIGKP 481
>gi|39935371|ref|NP_947647.1| acyl-CoA synthetase [Rhodopseudomonas palustris CGA009]
gi|39649223|emb|CAE27743.1| acyl-CoA synthetase [Rhodopseudomonas palustris CGA009]
Length = 563
Score = 37.8 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK-----LSVEE 138
PVKG L V ++AG+ ++ + + + L V + +
Sbjct: 311 APVKGQLRVVSSAGEPLNPEVIRWFAEHLAAPIHDHYGQTELGMVVNNHHRLRHTVHPGS 370
Query: 139 LSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL----S 194
L+M G R+ S+E+ P + R S ++ ++ G
Sbjct: 371 AGLAMPGFRVAVLDEHSNELPPNVPGVLSVDLKRSPLMWFSGYWQQETPAIEGGYYRTGD 430
Query: 195 TDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT---NNVAIRANISSPVSRA 248
T L+ DG +G + G G +D + + A+ ++ + +
Sbjct: 431 TVELEPDGSISFVGRADDVITSSG----YRIGPFDVESALIEHAAV--IEAAVIGKP 481
>gi|261339732|ref|ZP_05967590.1| putative lipoprotein [Enterobacter cancerogenus ATCC 35316]
gi|288318561|gb|EFC57499.1| putative lipoprotein [Enterobacter cancerogenus ATCC 35316]
Length = 177
Score = 37.8 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 23 FAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAY 82
F Y +GKT + ++RS ++ H+T VG + ++L H + + E +
Sbjct: 35 FNYFQGKTE--AWGMVQDRSGKQIRRF--HVTIVGDVVGETLTLNEHFVYDDGEKQQRVW 90
Query: 83 DIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFA 118
I G+ AGD+ GVA + A + L+ Q++
Sbjct: 91 HIRRTGSDRYEGTAGDIEGVATGQ-AAGNALNWQYS 125
>gi|260462343|ref|ZP_05810551.1| porin [Mesorhizobium opportunistum WSM2075]
gi|259031837|gb|EEW33105.1| porin [Mesorhizobium opportunistum WSM2075]
Length = 389
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 31/233 (13%)
Query: 118 AESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDAR-GLDK 176
A ++ + + +S+ + + G R+G +S D G
Sbjct: 136 ATTNDDRNNWQGRNKGVSLNFAWIQLGGLRVGKDESAFDTFIGYAGNVIEDTIVPYGNFD 195
Query: 177 MMSLSYRHSFG-LLKAGLSTDLLQKDGLKQVL--GIGYMASYAIGKIRSTVTGGYDAGTN 233
+ Y G A +S + + + G T YD+
Sbjct: 196 TNVVQYYFDAGNGFSAVVSLEEGSGIDTIDSYVPHVVGGLKWTQGWGALTGVISYDSNYE 255
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDN-------------SYYDK--SKYSVFAGYKF 278
VA + + V+ A L A + + DN +Y + ++V+ G +
Sbjct: 256 EVAGKVRLDVNVNEALALWIMAGYGTDDNLSDPTVAIPAGGRGFYKQWGGNWAVWGGGTY 315
Query: 279 DVAKSITISGGGQYFGDINKTGKDGWS---AGISAKYMISSGLEAQASVAFND 328
+ + + Y D W + Y + G A V + +
Sbjct: 316 KFNEKTSFNLQASY---------DDWKNLGIAANVAYTVVPGFTVTAEVDYQN 359
>gi|196233864|ref|ZP_03132702.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
gi|196222058|gb|EDY16590.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
Length = 265
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 284 ITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKG 334
T GGG Y+ + +D W AG + I+ A + F G
Sbjct: 156 WTTYGGGGYWFNPGPGNRDYWYAGWEVQRKITESFTAGMEIQFRTPDSVDG 206
>gi|91975321|ref|YP_567980.1| putative outer membrane protein [Rhodopseudomonas palustris BisB5]
gi|91681777|gb|ABE38079.1| putative outer membrane protein [Rhodopseudomonas palustris BisB5]
Length = 242
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 15/145 (10%)
Query: 187 GLLKAGLSTDLLQKDGLKQVLGIGYM---ASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
G G+ + VLG+ S + + TV G T + R S
Sbjct: 73 GKFLGGVQAGYDWQFAPSWVLGVEGQYSWLSGSNDAVAFTVVGQPGTYTFSDNQRGLASV 132
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDG 303
G L + G Y K ++ +A YK + + GG G + + +DG
Sbjct: 133 T----GRLG----YTWGPALLYVKGGWA-YADYKSSLT---FTAPGGAAVGVSSTSSQDG 180
Query: 304 WSAGISAKYMISSGLEAQASVAFND 328
++ G +Y+ + + + D
Sbjct: 181 YTVGAGLEYLFAQNWSGKIEYQYYD 205
>gi|71278969|ref|YP_267949.1| putative outer membrane porin [Colwellia psychrerythraea 34H]
gi|71144709|gb|AAZ25182.1| putative outer membrane porin [Colwellia psychrerythraea 34H]
Length = 340
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 37/302 (12%)
Query: 58 GSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAV---DDVLS 114
G L SLQA K NE S A + VKG E++ D+T + KL+ V DD
Sbjct: 41 GKLNISLQASEEKGESFNELKSNASRVGVKGKYELDH---DLTAIYKLEWQVNVNDDSKD 97
Query: 115 MQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGL 174
A + + + + +L + + + D + N
Sbjct: 98 TLTARNQWVGVRGGFGELTVGRSDTTLKVSQGKFDLFN---DYEADLKHLFIGENRVADS 154
Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT-- 232
S + + LL + + +D ++ D +GI + ++ K ++ +D
Sbjct: 155 ITYKSPVFS-NVQLLTSYIISDDIEADDPY-SVGIFFG-DLSLKKTDFFLSVAHDENMPV 211
Query: 233 --------NNVAIRANISSPVSRA---GTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVA 281
+ A ++ V+ G L GA++ + KS+ GY +V+
Sbjct: 212 KFKPVDSGESSRTEALANTRVTGMYKFGDLRLGAMFVDTEVVNTGKSE----TGYAANVS 267
Query: 282 KSI-TISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKG 340
I + QY +G D S G A Y + + F D + A D G
Sbjct: 268 YKIGKVLAKVQYQE---FSGADSISVG--ADYKLGKN--TKVYAWFTDREGNEVTAGDDG 320
Query: 341 VD 342
VD
Sbjct: 321 VD 322
>gi|316934923|ref|YP_004109905.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
DX-1]
gi|315602637|gb|ADU45172.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
DX-1]
Length = 561
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 84 IPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSK-----LSVEE 138
PVKG L V ++AG+ ++ + + + L V + +
Sbjct: 311 APVKGQLRVVSSAGEPLNPEVIRWFAEHLAAPIHDHYGQTELGMVVNNHHRLRHTVHPGS 370
Query: 139 LSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGL----S 194
L+M G R+ S+E+ P + R S ++ ++ G
Sbjct: 371 AGLAMPGFRVAVLDEQSNELPPNVPGVLSVDLKRSPLMWFSGYWQQETPAIEGGYYRTGD 430
Query: 195 TDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT---NNVAIRANISSPVSRA 248
T L+ DG +G + G G +D + + A+ ++ + +
Sbjct: 431 TVELEPDGSISFVGRADDVITSSG----YRIGPFDVESALIEHAAV--IEAAVIGKP 481
>gi|134094394|ref|YP_001099469.1| carbamoyl phosphate synthetase, glutamine amidotransferase small
subunit [Herminiimonas arsenicoxydans]
gi|133738297|emb|CAL61342.1| carbamoyl phosphate synthetase, glutamine amidotransferase small
subunit (Carbamoyl-phosphate synthetase glutamine chain)
[Herminiimonas arsenicoxydans]
Length = 342
Score = 37.4 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 205 QVLGIGYMASYAI-------GKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVW 257
++GI + + + G + G DA A + AG LD V
Sbjct: 71 NIIGIAGIDTRKLTRILREKGAQSGAILAGEDATAEKAL--ALAKTFGGLAG-LDLAKVV 127
Query: 258 ASGDNSYYDKSKYSVFAGYKFDVAKSITI 286
++ + ++++++ + GY + +
Sbjct: 128 STKASYPWNETEWKLGKGYGKQITPKYHV 156
>gi|33593839|ref|NP_881483.1| outer membrane receptor FepA [Bordetella pertussis Tohama I]
gi|33563912|emb|CAE43173.1| ferric enterobactin receptor [Bordetella pertussis Tohama I]
gi|332383258|gb|AEE68105.1| outer membrane receptor FepA [Bordetella pertussis CS]
Length = 737
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 49/239 (20%)
Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW-------SDEVNPVYSPTTLYNDARG 173
D+ AL S +V+ L M +R G + SD + +Y T N
Sbjct: 261 DLSALFSWKADSHNTVD---LDMGFSRQGNLFAGDTMNNANSDFSDSLYGKET--NAMYR 315
Query: 174 LDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT- 232
+ ++ + +G +A + D + +A G + GGYD
Sbjct: 316 ENYALTHRGVYDWGTSRASVGYD-----YTRNARQREGLAGGPEGAPTA---GGYDTARL 367
Query: 233 -----------------NNVA------IRANISSPVSRAGTLDCGAVWASGDNSYYDKSK 269
VA +R ++ P T GA+ + KS+
Sbjct: 368 KNWRAAAEASVPFHLGFEQVATVGVEWLRESLEDPAGTRQTYTGGAIGGTAPADRDPKSR 427
Query: 270 ---YSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVA 325
Y++FA ++ + ++ G + D N WS ++A Y ++ L+ + +A
Sbjct: 428 QTSYALFAEDNIEIDERTMLTPGVRL--DHNSEFGSNWSPSLNASYAVTDALKLKGGIA 484
>gi|307725645|ref|YP_003908858.1| hypothetical protein BC1003_3626 [Burkholderia sp. CCGE1003]
gi|307586170|gb|ADN59567.1| hypothetical protein BC1003_3626 [Burkholderia sp. CCGE1003]
Length = 1266
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 22/197 (11%)
Query: 85 PVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMK 144
P + NL+ + D G+A L+ + + E + +A +P + S
Sbjct: 723 PAQRNLQAAHDLLDNPGIAPLQ----RITTHNLREQHLALMAQNIPGTG------FTSYD 772
Query: 145 GARLGYYKSWSDEVNP--VYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDG 202
G LG S + + S + G D M S+ + G + G + + G
Sbjct: 773 GNALGIDASAWGNLPARLLVSAGPIVTVLGGRDSMYSIGTAYEGGQMMFGTRSRVNGTLG 832
Query: 203 LKQVLGIG---YMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDC-GAVWA 258
+ +G + G ++ GGY A +V +RA +P T + +W
Sbjct: 833 AQGFVGATLDVAGVAGMAGAWAASSVGGYLAREESVVLRARRLAP--TPATAELEAELWH 890
Query: 259 SGD----NSYYDKSKYS 271
N+Y+D ++ +
Sbjct: 891 KDSQQMVNAYWDAAEQA 907
>gi|259048710|emb|CBE71316.1| outer membrane protein [Brucella abortus]
Length = 321
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 23/198 (11%)
Query: 169 NDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRS-----T 223
+ A G ++Y + G + + + + I + +G ++ T
Sbjct: 132 DVADGGVSTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGT 191
Query: 224 VTG--GYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYK 277
+ G YD+ A + ++ ++ ++S N Y + ++V+ G K
Sbjct: 192 IAGVVAYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAK 251
Query: 278 FDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKK 333
F + T ++ D ++A Y + G V++ K
Sbjct: 252 FIAPEKATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKD 303
Query: 334 GVAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 304 TVAEDNAWGGIVRFQRSF 321
>gi|194290940|ref|YP_002006847.1| porin [Cupriavidus taiwanensis LMG 19424]
gi|193224775|emb|CAQ70786.1| putative porin [Cupriavidus taiwanensis LMG 19424]
Length = 385
Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 41/204 (20%)
Query: 169 NDARGLDKMMSLSYRHSFG-----LLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRST 223
+ A ++ Y FG + S ++ G + +YA G
Sbjct: 163 DAAFASRADNTVKYIGKFGGLTASAFYSFNSNGQETPGAFRRGQEYGALLNYAAGPFS-- 220
Query: 224 VTGGYDAGTNNVAIRANISSPVSRAGT----LDCGAVWASGDNSYYDKSKYSVFAGYK-- 277
G + ++PV +G GA +A G Y +++ A
Sbjct: 221 --VGAAYDEIHGTTTGPATAPVDASGQRIRRATVGANYAFGPAKVYAGYRWAKAADGASL 278
Query: 278 ------------FDVAKSI-------TISG-----GGQYFGDINKTGKDGWSAGISAKYM 313
+ ++ ++ G Y+ D K+ D W ++A Y
Sbjct: 279 PGQVATTANPLGINGTSNLYWLGLGYQLTPAFSLSGAAYYQDFRKSDADPWQFVVTADYA 338
Query: 314 ISS--GLEAQASVAFNDNFVKKGV 335
+S + S A NDN GV
Sbjct: 339 LSKRTDVYTSLSYALNDNGSLLGV 362
>gi|281420704|ref|ZP_06251703.1| hypothetical protein PREVCOP_04580 [Prevotella copri DSM 18205]
gi|281405477|gb|EFB36157.1| hypothetical protein PREVCOP_04580 [Prevotella copri DSM 18205]
Length = 189
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 267 KSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAG-----ISAKYMISSGLEAQ 321
K+ ++ A ++ + ++ G Y K+ W+ G ++ Y ++ GL +
Sbjct: 58 KAGFAAGAELQYQATDKLGLAVGALYSAQGTKSDHVTWTPGYINVPVTLNYYVAQGLALK 117
Query: 322 ASVA 325
A +
Sbjct: 118 AGIQ 121
>gi|62289598|ref|YP_221391.1| Omp2a, porin [Brucella abortus bv. 1 str. 9-941]
gi|82699527|ref|YP_414101.1| hypothetical protein BAB1_0659 [Brucella melitensis biovar Abortus
2308]
gi|189023855|ref|YP_001934623.1| Porin [Brucella abortus S19]
gi|237815094|ref|ZP_04594092.1| Outer membrane protein IIIA precursor [Brucella abortus str. 2308
A]
gi|123546512|sp|Q2YMY8|OMP2A_BRUA2 RecName: Full=Porin omp2a; Flags: Precursor
gi|215275693|sp|B2SAB9|OMP2A_BRUA1 RecName: Full=Porin omp2a; Flags: Precursor
gi|215275753|sp|Q44620|OMP2A_BRUAB RecName: Full=Porin omp2a; Flags: Precursor
gi|144121|gb|AAA83993.1| ORF2a precursor [Brucella abortus]
gi|11641126|gb|AAG38243.1| Omp2a porin [Brucella abortus]
gi|62195730|gb|AAX74030.1| Omp2a, porin [Brucella abortus bv. 1 str. 9-941]
gi|82615628|emb|CAJ10615.1| ATP/GTP-binding site motif A (P-loop):Porin, alpha proteobacteria
type [Brucella melitensis biovar Abortus 2308]
gi|189019427|gb|ACD72149.1| Porin [Brucella abortus S19]
gi|237789931|gb|EEP64141.1| Outer membrane protein IIIA precursor [Brucella abortus str. 2308
A]
gi|259048700|emb|CBE71311.1| outer membrane protein [Brucella abortus]
gi|259048702|emb|CBE71312.1| outer membrane protein [Brucella abortus]
gi|259048704|emb|CBE71313.1| outer membrane protein [Brucella abortus]
gi|259048706|emb|CBE71314.1| outer membrane protein [Brucella abortus]
gi|259048708|emb|CBE71315.1| outer membrane protein [Brucella abortus]
gi|259048712|emb|CBE71317.1| outer membrane protein [Brucella abortus]
gi|259048714|emb|CBE71318.1| outer membrane protein [Brucella abortus]
gi|259048716|emb|CBE71319.1| outer membrane protein [Brucella abortus]
gi|259048718|emb|CBE71320.1| outer membrane protein [Brucella abortus]
gi|259048720|emb|CBE71321.1| outer membrane protein [Brucella abortus]
gi|259048722|emb|CBE71322.1| outer membrane protein [Brucella abortus]
gi|259048724|emb|CBE71323.1| outer membrane protein [Brucella abortus]
Length = 321
Score = 37.1 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 23/198 (11%)
Query: 169 NDARGLDKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIR 221
+ A G ++Y + G A ++ + + D + YA G
Sbjct: 132 DVADGGVSTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGS 191
Query: 222 STVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYK 277
YD+ A + ++ ++ ++S N Y + ++V+ G K
Sbjct: 192 IAGVVAYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAK 251
Query: 278 FDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKK 333
F + T ++ D ++A Y + G V++ K
Sbjct: 252 FIAPEKATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKD 303
Query: 334 GVAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 304 TVAEDNAWGGIVRFQRSF 321
>gi|20804016|emb|CAD31593.1| PROBABLE PORIN, OUTER MEMBRANE PROTEIN [Mesorhizobium loti R7A]
Length = 369
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 50/251 (19%), Positives = 90/251 (35%), Gaps = 30/251 (11%)
Query: 127 FTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDA---RGLDKMMSLSYR 183
++ S+ S+ + + G R+G +S D + + ND+ G + Y
Sbjct: 123 YSDGSNSSSLNFAWIQLGGLRVGKDESAFD--TFIGYAGDVINDSLVPYGDFDTNVVQYY 180
Query: 184 HSFG-LLKAGLSTDL---LQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRA 239
G A +S + + V + Y G T YD+ VA +
Sbjct: 181 FDAGNGFSAVVSLEEGSGVVGTIDSYVPHVVGGVKYTQGWGAITGVVAYDSNYEEVAGKV 240
Query: 240 NISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFA---GYKFDVAKSITISGGGQYFG-- 294
+ + A +L A + + DN + Y++ A G+ + I GGG Y
Sbjct: 241 RLDVTATEALSLFIMAGYGTDDN--LNDPTYAIPAGDRGFYKQWGGNWAIWGGGTYTVNE 298
Query: 295 ----DINKTGKDGWSAGISAK--YMISSGLEAQASVAF----NDNFVKKGVAIDKGVDLS 344
++ + + G++A Y I GL A V + +D+ I G +
Sbjct: 299 KTAFNLQVSYDEAKEFGLAANVAYKIVPGLTITAEVDWAHNDHDSNGYNWTGIPAGKSNA 358
Query: 345 VG----LKKSF 351
VG ++SF
Sbjct: 359 VGGILRFQRSF 369
>gi|259048734|emb|CBE71328.1| outer membrane protein [Brucella abortus]
gi|259048736|emb|CBE71329.1| outer membrane protein [Brucella abortus]
gi|259048738|emb|CBE71330.1| outer membrane protein [Brucella abortus]
gi|259048740|emb|CBE71331.1| outer membrane protein [Brucella abortus]
gi|259048742|emb|CBE71332.1| outer membrane protein [Brucella abortus]
gi|259048744|emb|CBE71333.1| outer membrane protein [Brucella abortus]
Length = 319
Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 23/198 (11%)
Query: 169 NDARGLDKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIR 221
+ A G ++Y + G A ++ + + D + YA G
Sbjct: 130 DVADGGVSTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGS 189
Query: 222 STVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYK 277
YD+ A + ++ ++ ++S N Y + ++V+ G K
Sbjct: 190 IAGVVAYDSVIEEWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAK 249
Query: 278 FDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKK 333
F + T ++ D ++A Y + G V++ K
Sbjct: 250 FIAPEKATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKD 301
Query: 334 GVAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 302 TVAEDNAWGGIVRFQRSF 319
>gi|38049804|gb|AAR10521.1| phase 2 flagellin [Salmonella enterica]
Length = 501
Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 48/281 (17%), Positives = 84/281 (29%), Gaps = 46/281 (16%)
Query: 85 PVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAF---TVPSSKLSVEELSL 141
V G + N GV L A D+ L++Q +D + + S L ++ L++
Sbjct: 125 RVSGQTQFN-------GVKVL--AQDNTLTIQVGANDGETIDIDLKQINSQTLGLDSLNV 175
Query: 142 SMK---------------GARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSF 186
G + + +D + +PT + Y +
Sbjct: 176 QKAYDVSATDVISSTYSDGTKALTAPTATDIKTALGNPTVTGDTLTATVSFKDGKYYATV 235
Query: 187 GLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVS 246
G V S+ ++TVTG D V + A +++ +
Sbjct: 236 GGYTDAGDVAK-NGKYEVTVDSATGAVSFGATPTKATVTG--DTTVTKVQVNAPVAADAA 292
Query: 247 RAGTLDCGAVWASGDNS-------YYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKT 299
L G V ++ N+ Y DK+ ++ GY Y D N+T
Sbjct: 293 TKKALQDGGVSSADANAATLVKMSYTDKNGKTIEGGYALKAGDKY-------YAADYNET 345
Query: 300 GKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKG 340
+ Y + G A+ K V G
Sbjct: 346 TGAI--KAKTTSYTAADGTTKTAANQLGGADGKTEVVTIDG 384
>gi|221200519|ref|ZP_03573561.1| porin, Gram-negative type [Burkholderia multivorans CGD2M]
gi|221206200|ref|ZP_03579214.1| porin, Gram-negative type [Burkholderia multivorans CGD2]
gi|221174212|gb|EEE06645.1| porin, Gram-negative type [Burkholderia multivorans CGD2]
gi|221179860|gb|EEE12265.1| porin, Gram-negative type [Burkholderia multivorans CGD2M]
Length = 383
Score = 36.7 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 22/167 (13%)
Query: 176 KMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIG----YMASYAIGKIRSTVTGGYDAG 231
+ S + + G A LS + + + G ASYAIG +R V GY
Sbjct: 213 RFFSGALTFAQGPFAASLSYEQRNSNTVATNTGTERRATAAASYAIGPVRGFV--GYRYL 270
Query: 232 TNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQ 291
+ A V+ AS N Y+ ++Y+V +
Sbjct: 271 RASNAFLPANPIRVAN-------GAEASAANLYWAGAQYTVSPAFVVTAT---------A 314
Query: 292 YFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAID 338
Y+ D++ T D W A + A Y++S + A+ F N + ++
Sbjct: 315 YYQDVHSTSADPWLAVLCADYLLSKRTDIYATAGFARNKGGSALGVN 361
>gi|254720536|ref|ZP_05182347.1| outer membrane protein Omp31 precursor [Brucella sp. 83/13]
gi|265985569|ref|ZP_06098304.1| outer-membrane immunogenic protein [Brucella sp. 83/13]
gi|306838097|ref|ZP_07470954.1| outer membrane protein Omp31 [Brucella sp. NF 2653]
gi|264664161|gb|EEZ34422.1| outer-membrane immunogenic protein [Brucella sp. 83/13]
gi|306406834|gb|EFM63056.1| outer membrane protein Omp31 [Brucella sp. NF 2653]
Length = 240
Score = 36.7 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 24/175 (13%)
Query: 184 HSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
++ G K ST + + + G V GY+ +N + +
Sbjct: 51 YAGGKFKHPFSTFDTEDNEQ-----VSGSLDVTAGGFVGGVQAGYNWQLDNGGVLGAETD 105
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKY--SVFAGYKFDVAKSITI--SGGGQY------- 292
+ T A + + K ++ +V A + + + + +GG Y
Sbjct: 106 FQGSSVTGSISAGASGLEGKAETKVEWFGTVRARLGYTATERLMVYGTGGLAYGKVKSAF 165
Query: 293 --------FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
+ K GW+ G A+Y I++ ++ + D + V +D
Sbjct: 166 NLGDDASALHTWSDKTKAGWTLGAGAEYAINNNWTLKSEYLYTDLGKRNLVDVDN 220
>gi|15806430|ref|NP_295136.1| acetyl-lysine deacetylase [Deinococcus radiodurans R1]
gi|41017417|sp|Q9RUH3|LYSK_DEIRA RecName: Full=Acetyl-lysine deacetylase
gi|6459166|gb|AAF10979.1|AE001986_4 succinyl-diaminopimelate desuccinylase, putative [Deinococcus
radiodurans R1]
Length = 362
Score = 36.7 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 16/159 (10%)
Query: 199 QKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAG--------TNNVAIRANISSPVSRAGT 250
Q D +G+ G + + G D + S +
Sbjct: 46 QVDEAGNAVGVRG-----SGPLTVALLGHMDTVPGDIPVRVDEAGVLHGRGSVDAKGSLC 100
Query: 251 LDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISA 310
AV A + + A + + Q+ D G+ AG++
Sbjct: 101 TFIAAVSALPPEALSAARFVCIGATEEEAPSSKGARYAMRQHRPDFVLIGEPSGWAGLTL 160
Query: 311 KYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKK 349
Y L A+ V DNF G DL++G ++
Sbjct: 161 GYK--GRLVAKVRVE-KDNFHTAGDGTSAADDLTLGWQR 196
>gi|217973165|ref|YP_002357916.1| topoisomerase IV subunit B [Shewanella baltica OS223]
gi|217498300|gb|ACK46493.1| topoisomerase IV, subunit B [Shewanella baltica OS223]
Length = 392
Score = 36.7 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 202 GLKQVLGIGYMASYAIGKIRSTVTGGYDAG-----TNNVAIRANISSPVSRAGTLDCGAV 256
L + I AS G S YD N+ + ++ + G V
Sbjct: 18 SLYADVQINGFASIVAGSSLSDDKSYYDYDKELNFNNDSKVALQFTADLGS-GLRATAQV 76
Query: 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
+ G N Y + ++ A +D++ + + G Q F +
Sbjct: 77 LSRGSNDYSAEFEW---AYISYDISDKLMLMAGRQRFNLYKYSD 117
>gi|229620416|gb|ACQ84164.1| Omp31 [Brucella melitensis]
Length = 240
Score = 36.7 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 24/175 (13%)
Query: 184 HSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
++ G K S+ + + + G V GY+ +N + +
Sbjct: 51 YAGGKFKHPFSSFDKEDNEQ-----VSGSLDVTAGGFVGGVQAGYNWQLDNGVVLGAGTD 105
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKY--SVFAGYKFDVAKSITI--SGGGQY------- 292
+ T A + + K ++ +V A + + + + +GG Y
Sbjct: 106 FQGSSVTGSISAGASGLEGKAETKVEWFGTVRARLGYTATERLMVYGTGGLAYGKVKSAF 165
Query: 293 --------FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
+ K GW+ G A+Y I++ ++ + D + V +D
Sbjct: 166 NLGDDASALHTWSDKTKAGWTLGAGAEYAINNNWTLKSEYLYTDLGKRNLVDVDN 220
>gi|224537006|ref|ZP_03677545.1| hypothetical protein BACCELL_01882 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521373|gb|EEF90478.1| hypothetical protein BACCELL_01882 [Bacteroides cellulosilyticus
DSM 14838]
Length = 236
Score = 36.7 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 254 GAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYM 313
A W G ++ Y ++YS+ Y + D N G+ G + GI +Y
Sbjct: 24 AAQWKVGVSAGYAYNQYSIDTQYAY----------------DFNFDGRGGLTVGIPVEYG 67
Query: 314 ISSGLEAQASVAFNDNFVKKGVAIDKG 340
I L +A + A ++G
Sbjct: 68 ILDWLAVRADFVYLQKGYSMQRAYNQG 94
>gi|148252448|ref|YP_001237033.1| putative outer-membrane immunogenic protein [Bradyrhizobium sp.
BTAi1]
gi|146404621|gb|ABQ33127.1| putative outer-membrane immunogenic protein precursor
[Bradyrhizobium sp. BTAi1]
Length = 243
Score = 36.7 bits (83), Expect = 6.1, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 17/144 (11%)
Query: 185 SFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSP 244
S G G+ + V+G S+ G + + GG+ + R S
Sbjct: 74 SNGRFLGGVQVGADWQFAPTWVIGAEGQYSWLSGNVGAAFPGGFVYTNSQ---RGLGSIT 130
Query: 245 VSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGW 304
T G ++ G +Y D ++ A G Q N ++GW
Sbjct: 131 GRFGYTWGPGLLYVKGGYAYSDNNEKVTLA--------------GNQIGFATNGDHRNGW 176
Query: 305 SAGISAKYMISSGLEAQASVAFND 328
+ G +YM + A+A + +
Sbjct: 177 TVGAGIEYMFAPSWSAKAEYQYYN 200
>gi|329888255|ref|ZP_08266853.1| fimbrial usher protein [Brevundimonas diminuta ATCC 11568]
gi|328846811|gb|EGF96373.1| fimbrial usher protein [Brevundimonas diminuta ATCC 11568]
Length = 885
Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)
Query: 191 AGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGT 250
A T + ++G + +G S G + YD + +
Sbjct: 442 ANAQTQFILRNGSRLNFQVGASNSDTAGG-GYALVAAYDFYIDRPTTSDFFTVQFEHVSE 500
Query: 251 LDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG-KDGWSAGIS 309
+ S ++ + + + Y + + S G Y + G D + + ++
Sbjct: 501 -GFATL--SDPDAS-NPIAWQAYGQYSRVFSDRLYGSVGLAYNKSRDSAGLGDSFRSDLT 556
Query: 310 AKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
A Y I+ AQA V + G D+
Sbjct: 557 ANYAINRQWSAQAGVNYLKYEDTPGGRRDR 586
>gi|259048728|emb|CBE71325.1| outer membrane protein [Brucella abortus]
gi|259048730|emb|CBE71326.1| outer membrane protein [Brucella abortus]
gi|259048732|emb|CBE71327.1| outer membrane protein [Brucella abortus]
Length = 321
Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 23/198 (11%)
Query: 169 NDARGLDKMMSLSYRHSFG-LLKAGLSTDL----LQKDGLKQVL--GIGYMASYAIGKIR 221
+ A G ++Y + G A ++ + + D + YA G
Sbjct: 132 DVADGGVSTGKIAYTFTGGNGFSAVIALEQGGEDVDNDYTIDGYMPHVVGGLKYAGGWGS 191
Query: 222 STVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASG--DNSYYDK--SKYSVFAGYK 277
YD+ + A + ++ ++ ++S N Y + ++V+ G K
Sbjct: 192 IAGVVAYDSVIEDWATKVRGDVNITDRFSVWLQGAYSSAATPNQNYGQWGGDWAVWGGAK 251
Query: 278 FDVAKSITISGGGQYFGDINKTGKDGWSAGISAK--YMISSGLEAQASVAFND--NFVKK 333
F + T ++ D ++A Y + G V++ K
Sbjct: 252 FIAPEKATF--------NLQAAHDDWGKTAVTANVAYQLVPGFTITPEVSYTKFGGEWKD 303
Query: 334 GVAIDKGVDLSVGLKKSF 351
VA D V ++SF
Sbjct: 304 TVAEDNAWGGIVRFQRSF 321
>gi|77919972|ref|YP_357787.1| putative outer membrane protein [Pelobacter carbinolicus DSM 2380]
gi|77546055|gb|ABA89617.1| putative outer membrane protein [Pelobacter carbinolicus DSM 2380]
Length = 208
Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 218 GKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDN---SYYDKSKYSVFA 274
G + + T VA A++ V + G W + Y+ ++ V
Sbjct: 62 GGLTLEYFFTPNFSTELVAAIAHVDLEVGD-NKVGSGEAWLLPPSLYIKYHPMPQWKVSP 120
Query: 275 GYKFDVA-----KSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329
V + GG +Y ++ GW+A + A I+ L A V + DN
Sbjct: 121 YVGVGVDWVYAWDETVVVGGQRY--SLDIEDSFGWAAKVGADIKITENLYANVDVMYLDN 178
Query: 330 FVKKGVAID-KGVDL 343
+ + G DL
Sbjct: 179 ETEVNSSAGLDGTDL 193
>gi|160875585|ref|YP_001554901.1| topoisomerase IV subunit B [Shewanella baltica OS195]
gi|160861107|gb|ABX49641.1| gram negative topoisomerase IV, subunit B [Shewanella baltica
OS195]
gi|315267774|gb|ADT94627.1| topoisomerase IV, subunit B [Shewanella baltica OS678]
Length = 392
Score = 36.3 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 202 GLKQVLGIGYMASYAIGKIRSTVTGGYDAG-----TNNVAIRANISSPVSRAGTLDCGAV 256
L + I AS G S YD N+ + ++ + G V
Sbjct: 18 SLYADVQINGFASIVAGSSLSDDKSYYDYDKELNFNNDSKVALQFTADLGS-GLRATAQV 76
Query: 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
+ G+N+Y + ++ A +D++ + + G Q F +
Sbjct: 77 LSRGNNNYSAEFEW---AYISYDISDKLMLMAGRQRFNLYKYSD 117
>gi|126174210|ref|YP_001050359.1| TonB-dependent receptor [Shewanella baltica OS155]
gi|125997415|gb|ABN61490.1| TonB-dependent receptor [Shewanella baltica OS155]
Length = 867
Score = 36.3 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 47/299 (15%), Positives = 97/299 (32%), Gaps = 28/299 (9%)
Query: 37 RARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANA 96
RA +G HI ++ LE + Y K G AY+ P ++V ++
Sbjct: 280 RAIQPDFDNIGTTFNHIYRLDNGLEFFAEGMYQKNTG------SAYEAPAGYTVDVAGDS 333
Query: 97 GDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSV--EELSLSMKGARLGYYKSW 154
++ V D+ + + SDV + P ++ + + G R
Sbjct: 334 ANIPQY------VHDIDMLDGSVSDVITVRTRFPERRVQEYDTQSYRVLAGLRGELADWS 387
Query: 155 SDEVNPVYSPTTLYNDARG---LDKMMSLSYRHSFGLLKAG-----LSTDLLQKDGLKQV 206
+ T + G K+ + F G L+ G+++
Sbjct: 388 WETAASYGKSTNEITNVAGYMNATKLDAAVAADEFNPFNLGRDSSAAQIAALRDPGMRKG 447
Query: 207 LGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD--CGAVWASGDNSY 264
+ I + G + +R ++ + AS +
Sbjct: 448 ESEVLSLDFNISGDLFALPAGTVSSVFGGELRKEQIFDRPSINAVNNEIIGLGASDAEA- 506
Query: 265 YDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQAS 323
D+++Y+V+ + F + ++ + +Y + G D + IS +Y L +AS
Sbjct: 507 -DRTQYAVYGEFNFPITDTLDVIAALRY-DHYSDFGGDV-NPKISMRYRPLEDLVLRAS 562
>gi|146343440|ref|YP_001208488.1| putative outer-membrane immunogenic protein [Bradyrhizobium sp.
ORS278]
gi|146196246|emb|CAL80273.1| conserved hypothetical protein; putative outer-membrane immunogenic
protein precursor; putative secreted protein
[Bradyrhizobium sp. ORS278]
Length = 242
Score = 36.3 bits (82), Expect = 7.3, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 17/144 (11%)
Query: 185 SFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSP 244
S G G+ + V+G S+ G + + GGY + R S
Sbjct: 73 SNGRFLGGVQAGADWQFAPTWVIGAEGQYSWLSGSVGAAFPGGYVYNNSQ---RGLGSIT 129
Query: 245 VSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGW 304
T G ++ G +Y D ++ A G Q + ++GW
Sbjct: 130 GRVGYTWGPGLLYVKGGYAYSDNNEKVTLA--------------GNQVGFATSGDHRNGW 175
Query: 305 SAGISAKYMISSGLEAQASVAFND 328
+ G +YM + A+A + +
Sbjct: 176 TVGGGIEYMFAPNWSAKAEYQYYN 199
>gi|229220826|ref|NP_888487.2| outer membrane receptor FepA [Bordetella bronchiseptica RB50]
Length = 737
Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 49/239 (20%)
Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW-------SDEVNPVYSPTTLYNDARG 173
D+ AL S+ +V+ L M +R G + SD + +Y T N
Sbjct: 261 DLSALFSWKADSRNTVD---LDMGFSRQGNLFAGDTMNNANSDFSDSLYGKET--NAMYR 315
Query: 174 LDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT- 232
+ ++ + +G +A + D + +A G + GGYD
Sbjct: 316 ENYALTHRGVYDWGTSRASVGYD-----YTRNARQREGLAGGPEGAPTA---GGYDTARL 367
Query: 233 -----------------NNVA------IRANISSPVSRAGTLDCGAVWASGDNSYYDKSK 269
VA +R ++ P T GA+ + KS+
Sbjct: 368 KNWRAAAEASVPFHLGFEQVATVGVEWLRESLEDPAGTRQTYTGGAIGGTAPADRDPKSR 427
Query: 270 ---YSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVA 325
Y++FA ++ + ++ G + D N WS ++A Y ++ L+ + +A
Sbjct: 428 QTSYALFAEDNIEIDERTMLTPGVRL--DHNSEFGSNWSPSLNASYAVTDALKLKGGIA 484
>gi|149910490|ref|ZP_01899130.1| hypothetical outer membrane protein [Moritella sp. PE36]
gi|149806450|gb|EDM66422.1| hypothetical outer membrane protein [Moritella sp. PE36]
Length = 327
Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 12/185 (6%)
Query: 168 YNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGG 227
YN + ++Y +++G S D + G+ ASY
Sbjct: 124 YNALTIASDLTDVAYTNAYGGNLGNTSRDNSTLKYSNKFSGLQLDASYR--------LDD 175
Query: 228 YDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITIS 287
+ + A + ++ G A YD S + V A YK A + I+
Sbjct: 176 NQSDVESDAEYSLAAAYKLDFGLTLAAGFSAKSPTDDYDASLFLVGASYK---AGPVNIA 232
Query: 288 GGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFND-NFVKKGVAIDKGVDLSVG 346
+ G+D + ++ +Y I+ L AQ F + D DL G
Sbjct: 233 ATFAQGSEFEGKGEDHSAYELAVEYKITKQLRAQVLYNFQELEDTVSSTKTDSVDDLVFG 292
Query: 347 LKKSF 351
++ F
Sbjct: 293 VRYDF 297
>gi|33568527|emb|CAE32439.1| ferric enterobactin receptor [Bordetella bronchiseptica RB50]
Length = 714
Score = 36.3 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 49/239 (20%)
Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSW-------SDEVNPVYSPTTLYNDARG 173
D+ AL S+ +V+ L M +R G + SD + +Y T N
Sbjct: 238 DLSALFSWKADSRNTVD---LDMGFSRQGNLFAGDTMNNANSDFSDSLYGKET--NAMYR 292
Query: 174 LDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGT- 232
+ ++ + +G +A + D + +A G + GGYD
Sbjct: 293 ENYALTHRGVYDWGTSRASVGYD-----YTRNARQREGLAGGPEGAPTA---GGYDTARL 344
Query: 233 -----------------NNVA------IRANISSPVSRAGTLDCGAVWASGDNSYYDKSK 269
VA +R ++ P T GA+ + KS+
Sbjct: 345 KNWRAAAEASVPFHLGFEQVATVGVEWLRESLEDPAGTRQTYTGGAIGGTAPADRDPKSR 404
Query: 270 ---YSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVA 325
Y++FA ++ + ++ G + D N WS ++A Y ++ L+ + +A
Sbjct: 405 QTSYALFAEDNIEIDERTMLTPGVRL--DHNSEFGSNWSPSLNASYAVTDALKLKGGIA 461
>gi|38049798|gb|AAR10518.1| phase 2 flagellin [Salmonella enterica]
Length = 501
Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 51/280 (18%), Positives = 89/280 (31%), Gaps = 44/280 (15%)
Query: 85 PVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAF---TVPSSKLSVEELSL 141
V G + N GV L A D+ L++Q +D + + S L ++ L++
Sbjct: 125 RVSGQTQFN-------GVKVL--AQDNTLTIQVGANDGETIDIDLKQINSQTLGLDSLNV 175
Query: 142 SMK---GARLGYYKSWSDEVNPVYSPT-----TLYNDARGLDKMMSLSYRHSFGLLKAGL 193
A ++SD + +PT T + ++ + G A +
Sbjct: 176 QKAYDVSATDVISSTYSDGTKALTAPTATDIKTALGNPTVTGDTLTATVSFKDGKYYATV 235
Query: 194 STDLLQKDGLKQVL------GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSR 247
D K S+ ++TVTG D V + A +++ +
Sbjct: 236 GGYTDTGDAAKNGKYEVTVDSATGAVSFGATPTKATVTG--DTTVTKVQVNAPVAADAAT 293
Query: 248 AGTLDCGAVWASGDNS-------YYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
L G V ++ N+ Y DK+ ++ GY Y D N+T
Sbjct: 294 KKALQDGGVSSADANAATLVKMSYTDKNGKTIEGGYALKAGDKY-------YAADYNETT 346
Query: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKG 340
+ Y + G A+ K V G
Sbjct: 347 GAI--KAKTTSYTAADGTTKTAANQLGGADGKTEVVTIDG 384
>gi|298384217|ref|ZP_06993777.1| hypothetical protein HMPREF9007_00804 [Bacteroides sp. 1_1_14]
gi|298262496|gb|EFI05360.1| hypothetical protein HMPREF9007_00804 [Bacteroides sp. 1_1_14]
Length = 477
Score = 35.9 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
Y+ G K STDL + G + V G G N A +
Sbjct: 313 RYKFEDGTFKPDGSTDLSEVASYFNAAGFDFAQGAKAAAFNFFVNGITGYGKENNAPK-- 370
Query: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYK 277
V+ +GD+ ++ V +GY
Sbjct: 371 ------------LAFVFKTGDDGVSADRRFVVISGYA 395
>gi|253570776|ref|ZP_04848184.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251839725|gb|EES67808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 477
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
Y+ G K STDL + G + V G G N A +
Sbjct: 313 RYKFEDGTFKPDGSTDLSEVASYFNAAGFDFAQGAKAAAFNFFVNGITGYGKENNAPK-- 370
Query: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYK 277
V+ +GD+ ++ V +GY
Sbjct: 371 ------------LAFVFKTGDDGVSADRRFVVISGYA 395
>gi|126174583|ref|YP_001050732.1| topoisomerase IV subunit B [Shewanella baltica OS155]
gi|125997788|gb|ABN61863.1| gram negative topoisomerase IV, subunit B [Shewanella baltica
OS155]
Length = 392
Score = 35.9 bits (81), Expect = 8.6, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 202 GLKQVLGIGYMASYAIGKIRSTVTGGYDAG-----TNNVAIRANISSPVSRAGTLDCGAV 256
L + I AS G S YD N+ + ++ + G V
Sbjct: 18 SLYADVQINGFASIVAGSSLSDDKSYYDYDKELNFNNDSKVALQFTADLGS-GLRATAQV 76
Query: 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
+ G+N Y + ++ A +D++ + + G Q F +
Sbjct: 77 LSRGNNDYSAEFEW---AYISYDISDKLMLMAGRQRFNLYKYSD 117
>gi|301165270|emb|CBW24841.1| putative lipoprotein [Bacteroides fragilis 638R]
Length = 477
Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
Y+ G K STDL + G + V G G N A +
Sbjct: 313 RYKFEDGTFKPDGSTDLSEVASYFNAAGFDFAQGAKAAAFNFFVNGITGYGKENNAPK-- 370
Query: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYK 277
V+ +GD+ ++ V +GY
Sbjct: 371 ------------LAFVFKTGDDGVSADRRFVVISGYA 395
>gi|289467881|gb|ADC95625.1| 31kDa outer membrane immunogenic protein precursor [Brucella
melitensis bv. 1 str. M5]
Length = 219
Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 24/175 (13%)
Query: 184 HSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
++ G K S+ + + + G V GY+ +N + +
Sbjct: 30 YAGGKFKHPFSSFDKEDNEQ-----VSGSLDVTAGGFVGGVQAGYNWQLDNGVVLGAETD 84
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKY--SVFAGYKFDVAKSITI--SGGGQY------F 293
+ T A + + K ++ +V A + + + + +GG Y F
Sbjct: 85 FQGSSVTGSISAGASGLEGKAETKVEWFGTVRARLGYTATERLMVYGTGGLAYGKVKSAF 144
Query: 294 GDINKTG---------KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
+ G K GW+ G A+Y I++ ++ + D + V +D
Sbjct: 145 NLGDDAGALHTWSDKTKAGWTLGAGAEYAINNNWTLKSEYLYTDLGKRNLVDVDN 199
>gi|186470821|ref|YP_001862139.1| porin [Burkholderia phymatum STM815]
gi|184197130|gb|ACC75093.1| porin Gram-negative type [Burkholderia phymatum STM815]
Length = 383
Score = 35.9 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 18/165 (10%)
Query: 176 KMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTG--GYDAGTN 233
+ S + + G L A +S + + + G A+ A + +V G GY
Sbjct: 213 RFFSGALTFAQGPLAASVSYEQRNSNTVATNTGSERRATAAASYVIGSVKGFAGYRYLRA 272
Query: 234 NVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYF 293
+ A V+ AS N Y+ ++YSV + Y+
Sbjct: 273 SNAFLPANPIRVAN-------GSDASAANLYWAGAQYSVTPAFVLTAT---------AYY 316
Query: 294 GDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAID 338
D++ TG D W A +SA Y++S + A+ F N + ++
Sbjct: 317 QDVHSTGADPWLAVLSADYLLSKRTDVYATAGFAHNKDGSALGVN 361
>gi|212636067|ref|YP_002312592.1| TonB-dependent receptor [Shewanella piezotolerans WP3]
gi|212557551|gb|ACJ30005.1| TonB-dependent receptor [Shewanella piezotolerans WP3]
Length = 690
Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 30/258 (11%)
Query: 106 KLAVDDVLSMQFAESDV---RALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVY 162
+LA D ++ DV + + +P +K+ + + SD+
Sbjct: 251 ELAGQDSGALVDENGDVVGGDEMIWDMPWTKIDAQS-----ENYGADLRYQLSDDWEFAV 305
Query: 163 SPTTLYND-ARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIR 221
+N+ R K + SY G K + L+ D +Q ++ S + ++
Sbjct: 306 GYNKQHNERERWESKPQTSSYDPDTGSYK-NKPYNKLE-DWQQQAFYFDFVGSIELAGMQ 363
Query: 222 STVT-GGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSK--------YSV 272
+ GG +++ T V + Y +K Y V
Sbjct: 364 HDLLFGGNYVDHQYSSLKVKGKMDNGNINT----GVIVPQPDLDYADAKASSEDYQYYGV 419
Query: 273 FAGYKFDVAKSITISGGGQYFGDINKTGKDGWSA--GISAKYMISSGLEAQASVAFNDNF 330
FA + + G +Y +KT D S Y A ++++F
Sbjct: 420 FAQDLISLTDEWQVLLGVRY-DQQDKTDADSNSVLPKFGVIYHPVDN--ASIYANYSESF 476
Query: 331 VKKGVAIDKGVDLSVGLK 348
+G +D D S GL+
Sbjct: 477 EPQGSILDD-EDGSYGLE 493
>gi|38049820|gb|AAR10529.1| phase 2 flagellin [Salmonella enterica]
gi|38049822|gb|AAR10530.1| phase 2 flagellin [Salmonella enterica]
gi|308054847|gb|ADO01470.1| flagellin [Salmonella enterica subsp. enterica]
Length = 501
Score = 35.9 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 88/280 (31%), Gaps = 44/280 (15%)
Query: 85 PVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAF---TVPSSKLSVEELSL 141
V G + N GV L A D+ L++Q +D + + S L ++ L++
Sbjct: 125 RVSGQTQFN-------GVKVL--AQDNTLTIQVGANDGETIDIDLKQINSQTLGLDSLNV 175
Query: 142 SMK---GARLGYYKSWSDEVNPVYSPTTL-----YNDARGLDKMMSLSYRHSFGLLKAGL 193
A ++SD + +PT + ++ + G A +
Sbjct: 176 QKAYDVSATDVISSTYSDGTQALTAPTATDIKAALGNPTVTGDTLTAAVSFKDGKYYATV 235
Query: 194 STDLLQKDGLKQVL------GIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSR 247
S D K S+ +STVTG D V + A +++ +
Sbjct: 236 SGYTDAGDTAKNGKYEVTVDSATGAVSFGATPTKSTVTG--DTAVTKVQVNAPVAADAAT 293
Query: 248 AGTLDCGAVWASGDNS-------YYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
L G V ++ N+ Y DK+ ++ GY Y D ++
Sbjct: 294 KKALQDGGVSSADANAATLVKMSYTDKNGKTIEGGYALKAGDKY-------YAADYDEAT 346
Query: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKG 340
+ Y + G A+ K V G
Sbjct: 347 GAI--KAKTTSYTAADGTTKTAANQLGGVDGKTEVVTIDG 384
>gi|260568272|ref|ZP_05838741.1| outer membrane protein Omp31 [Brucella suis bv. 4 str. 40]
gi|16611660|gb|AAL27289.1|AF366066_1 outer membrane protein Omp31 [Brucella suis]
gi|260154937|gb|EEW90018.1| outer membrane protein Omp31 [Brucella suis bv. 4 str. 40]
Length = 240
Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 24/175 (13%)
Query: 184 HSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISS 243
++ G K S+ + + + G V GY+ +N + +
Sbjct: 51 YAGGKFKHPFSSFDKEDNEQ-----VSGSLDATAGGFVGGVQAGYNWQLDNGVVLGAETD 105
Query: 244 PVSRAGTLDCGAVWASGDNSYYDKSKY--SVFAGYKFDVAKSITI--SGGGQY------- 292
+ T A + + K ++ +V A + + + + +GG Y
Sbjct: 106 FQGSSVTGSISAGASGLEGKAETKVEWFGTVRARLGYTATERLMVYGTGGLAYGKVKSAF 165
Query: 293 --------FGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
+ K GW+ G A+Y I++ ++ + D + V +D
Sbjct: 166 NLGDDASALHTWSDKTKAGWTLGAGAEYAINNNWTLKSEYLYTDLGKRNLVDVDN 220
>gi|153000877|ref|YP_001366558.1| topoisomerase IV subunit B [Shewanella baltica OS185]
gi|151365495|gb|ABS08495.1| gram negative topoisomerase IV, subunit B [Shewanella baltica
OS185]
Length = 392
Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 202 GLKQVLGIGYMASYAIGKIRSTVTGGYDAG-----TNNVAIRANISSPVSRAGTLDCGAV 256
L + I AS G S YD N+ + ++ + G V
Sbjct: 18 SLYADVQINGFASIVAGSSLSDDKSYYDYDKELNFNNDSKVALQFTADLGS-GLRATAQV 76
Query: 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
+ G+N Y + ++ A +D++ + + G Q F +
Sbjct: 77 LSRGNNDYSAEFEW---AYISYDISDKLMLMAGRQRFNLYKYSD 117
>gi|109898542|ref|YP_661797.1| TonB-dependent receptor [Pseudoalteromonas atlantica T6c]
gi|109700823|gb|ABG40743.1| TonB-dependent receptor [Pseudoalteromonas atlantica T6c]
Length = 812
Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 218 GKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLD--CGAVWASG----DNSYYDKS--- 268
G T+ G +D ++ +++ + TL + G SYY+ S
Sbjct: 185 GAFSYTL-GSWD--------KSVMTAEIGGPATLGGKEAGFYLYGEVENSGSYYENSGTD 235
Query: 269 KYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGW 304
+ + + DV ++ GG Y D + GW
Sbjct: 236 QTVLQGSFNIDVTDNLRFEFGGMYH-DYDGNQVAGW 270
>gi|71280990|ref|YP_266811.1| OmpW family outer membrane protein [Colwellia psychrerythraea 34H]
gi|71146730|gb|AAZ27203.1| outer membrane protein, OmpW family [Colwellia psychrerythraea 34H]
Length = 237
Score = 35.9 bits (81), Expect = 9.9, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 25/76 (32%)
Query: 272 VFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFV 331
V Y + T + F ++ G G+S + Y + S + D
Sbjct: 139 VGVNYTIFFDEDFTSTPQAAGFSNLELDGSWGYSVQLGLDYELDKNWSVNVSARYIDINT 198
Query: 332 KKGVAIDKGVDLSVGL 347
K ID + + GL
Sbjct: 199 KATFNIDNALGVDGGL 214
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.125 0.340
Lambda K H
0.267 0.0388 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,506,534,137
Number of Sequences: 14124377
Number of extensions: 82187239
Number of successful extensions: 225413
Number of sequences better than 10.0: 540
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 460
Number of HSP's that attempted gapping in prelim test: 224671
Number of HSP's gapped (non-prelim): 681
length of query: 351
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 211
effective length of database: 2,865,380,850
effective search space: 604595359350
effective search space used: 604595359350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 81 (35.9 bits)