RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>gnl|CDD|145590 pfam02530, Porin_2, Porin subfamily.  This family consists of
           porins from the alpha subdivision of Proteobacteria the
           members of this family are related to pfam00267. The
           porins form large aqueous channels in the cell membrane
           allowing the selective entry of hydrophilic compounds
           this so called 'molecular sieve' is found in the cell
           walls of gram negative bacteria.
          Length = 378

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 9/157 (5%)

Query: 192 GLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTL 251
            L               +        G         YD+     A+RA +S       TL
Sbjct: 206 DLGAYGANSYIGSYTPDVVGGVKVDQGWGAFQGVVAYDSDKEEGAVRARLSVKAGDGDTL 265

Query: 252 DCGAVWASGDNSYYDKSKY-------SVFAGYKFDVAKSITISGGGQYFGDINKTGKD-- 302
           +    +ASG N Y   S+Y       +V+AGY +       I+ G Q+ G  N    D  
Sbjct: 266 NIAGGYASGANRYTGDSEYHNWGGNWAVWAGYTYKATDKTAITPGAQWGGAGNVCNPDFD 325

Query: 303 GWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDK 339
           GW+ G +  Y I   L   A V + D   K   +  K
Sbjct: 326 GWAVGANVDYTIVDNLTFTAEVRYTDLGQKYFGSDAK 362


>gnl|CDD|58574 cd04273, ZnMc_ADAMTS_like, Zinc-dependent metalloprotease,
           ADAMTS_like subgroup. ADAMs (A Disintegrin And
           Metalloprotease) are glycoproteins, which play roles in
           cell signaling, cell fusion, and cell-cell interactions.
           This particular subfamily represents domain
           architectures that combine ADAM-like metalloproteinases
           with thrombospondin type-1 repeats. ADAMTS (a
           disintegrin and metalloproteinase with thrombospondin
           motifs) proteinases are inhibited by TIMPs (tissue
           inhibitors of metalloproteinases), and they play roles
           in coagulation, angiogenesis, development and
           progression of arthritis. They hydrolyze the von
           Willebrand factor precursor and various components of
           the extracellular matrix..
          Length = 207

 Score = 30.2 bits (68), Expect = 0.87
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 51  PHITKVGGSLEKSLQA--RY-HKLNGNNEFNSLAYDIPV---KGNLEVNANAGDVTGVAK 104
                + G+ +KSL++  R+  KLN  N+ +   +D  +   + ++  +    D  G+A 
Sbjct: 60  ESGLLISGNAQKSLKSFCRWQKKLNPPNDSDPEHHDHAILLTRQDICRSNGNCDTLGLAP 119

Query: 105 LKLAVDDVLSMQFAESDVRALAFTV 129
           +        S    E    + AFT+
Sbjct: 120 VGGMCSPSRSCSINEDTGLSSAFTI 144


>gnl|CDD|34386 COG4773, FhuE, Outer membrane receptor for ferric coprogen and
           ferric-rhodotorulic acid [Inorganic ion transport and
           metabolism].
          Length = 719

 Score = 28.0 bits (62), Expect = 3.6
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 239 ANISSPVSRAGTLDCGAVWASGDNSY----YDKSKYSVFAGYKFDVAKSITISGGGQY 292
           A++S P++  GT+    V A  D       Y+  K+  +   + D+     ++ G  Y
Sbjct: 211 ADVSGPLNSEGTVRGRLVAAYEDKDSFKDRYNSRKHVFYGIAEADLGPDTVLTAGADY 268


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,849,565
Number of extensions: 194054
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 13
Length of query: 351
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 256
Effective length of database: 4,210,882
Effective search space: 1077985792
Effective search space used: 1077985792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.4 bits)