RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein,
           immunotoxin, agglutinin abrin, glycoprotein, hydrolase,
           lectin, plant defense; HET: NAG; 2.60A {Abrus
           precatorius} PDB: 2q3n_A* (A:1-184)
          Length = 184

 Score = 27.6 bits (61), Expect = 2.6
 Identities = 6/60 (10%), Positives = 21/60 (35%)

Query: 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISS 316
           + +G  S++ ++  +  + Y F   +  ++   G Y        +      +  + +   
Sbjct: 77  YRAGSESFFFRNAPASASTYLFTGTQQYSLPFDGNYDDLEKWAHQSRQRISLGLEALRQG 136


>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A
           {Neisseria meningitidis} (A:)
          Length = 155

 Score = 26.5 bits (58), Expect = 4.9
 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 5/63 (7%)

Query: 254 GAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFG-DINKTGK-DGWSAGISAK 311
               AS            + AGY+ +    +  +     +      +     +S G SA 
Sbjct: 13  AHAKASSSLGSAKGFSPRISAGYRIN---DLRFAVDYTRYKNYKAPSTDFKLYSIGASAI 69

Query: 312 YMI 314
           Y  
Sbjct: 70  YDF 72


>2zjr_U 50S ribosomal protein L28; ribosome, large ribosomal
          subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
          tRNA-binding, methylation; 2.91A {Deinococcus
          radiodurans} (U:1-47)
          Length = 47

 Score = 26.1 bits (57), Expect = 7.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 25 YVRGKTSMVSNNRARNRSAGKVGNVLPHITK 55
          Y+ GK ++V N+  R   A   G V    T 
Sbjct: 6  YLTGKKNLVVNSVIRRGKARADGGVGRKTTG 36


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,460,162
Number of extensions: 104970
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 17
Length of query: 351
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 262
Effective length of database: 1,947,404
Effective search space: 510219848
Effective search space used: 510219848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.4 bits)