RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein, immunotoxin, agglutinin abrin, glycoprotein, hydrolase, lectin, plant defense; HET: NAG; 2.60A {Abrus precatorius} PDB: 2q3n_A* (A:1-184) Length = 184 Score = 27.6 bits (61), Expect = 2.6 Identities = 6/60 (10%), Positives = 21/60 (35%) Query: 257 WASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISS 316 + +G S++ ++ + + Y F + ++ G Y + + + + Sbjct: 77 YRAGSESFFFRNAPASASTYLFTGTQQYSLPFDGNYDDLEKWAHQSRQRISLGLEALRQG 136 >1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:) Length = 155 Score = 26.5 bits (58), Expect = 4.9 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 5/63 (7%) Query: 254 GAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFG-DINKTGK-DGWSAGISAK 311 AS + AGY+ + + + + + +S G SA Sbjct: 13 AHAKASSSLGSAKGFSPRISAGYRIN---DLRFAVDYTRYKNYKAPSTDFKLYSIGASAI 69 Query: 312 YMI 314 Y Sbjct: 70 YDF 72 >2zjr_U 50S ribosomal protein L28; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (U:1-47) Length = 47 Score = 26.1 bits (57), Expect = 7.1 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 25 YVRGKTSMVSNNRARNRSAGKVGNVLPHITK 55 Y+ GK ++V N+ R A G V T Sbjct: 6 YLTGKKNLVVNSVIRRGKARADGGVGRKTTG 36 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.131 0.369 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,460,162 Number of extensions: 104970 Number of successful extensions: 145 Number of sequences better than 10.0: 1 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 17 Length of query: 351 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 262 Effective length of database: 1,947,404 Effective search space: 510219848 Effective search space used: 510219848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 55 (25.4 bits)