RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.25 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 14/35 (40%) Query: 103 AKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVE 137 A LKL DD S A ALA K ++E Sbjct: 27 ASLKLYADD--S---AP----ALAI-----KATME 47 Score = 27.3 bits (59), Expect = 4.9 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 9/36 (25%) Query: 133 KLSVEELSLSMKGARLGYYKSWSDEVNPVYS-PTTL 167 K ++++L S+K L ++D+ P + T+ Sbjct: 19 KQALKKLQASLK---L-----YADDSAPALAIKATM 46 >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Score = 28.5 bits (62), Expect = 2.1 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 12/63 (19%) Query: 263 SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD----GWSAGISAKYMISSGL 318 YY + ++ I GG+Y ++ ++ G+ + I L Sbjct: 283 DYYTDLMFKAYSSAANQ-----PILSGGRYDQLLSNFQEEAFAIGFCCHMDT---ILKAL 334 Query: 319 EAQ 321 E Q Sbjct: 335 ERQ 337 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.4 bits (63), Expect = 2.3 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 13/57 (22%) Query: 256 VWASGDNSYYDKSKYSVFAGYKFDVA----KSITISGGGQYFGDINKTGKDGWSAGI 308 VW DN + D +S+ D+ ++TI GG+ K ++ +SA I Sbjct: 1645 VWNRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEK----GKRIRENYSAMI 1692 >2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A* Length = 301 Score = 27.6 bits (60), Expect = 4.4 Identities = 17/107 (15%), Positives = 24/107 (22%), Gaps = 5/107 (4%) Query: 223 TVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAK 282 + G NV + + D Y + F Sbjct: 185 ELAAIAKFGATNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATT 244 Query: 283 SITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329 GG T D G+ A Y + G +A ND Sbjct: 245 V-----GGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDL 286 >1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1 Length = 330 Score = 26.7 bits (58), Expect = 7.4 Identities = 20/162 (12%), Positives = 44/162 (27%), Gaps = 2/162 (1%) Query: 192 GLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTL 251 G S + G + + + G A ++ + ++ Sbjct: 169 GTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYS 228 Query: 252 DCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDG--WSAGIS 309 + + + A Y+FD ++ DI G + + Sbjct: 229 ETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVG 288 Query: 310 AKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 A Y + + A N + I+ ++VG+ F Sbjct: 289 ATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF 330 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.131 0.369 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,822,652 Number of extensions: 124909 Number of successful extensions: 216 Number of sequences better than 10.0: 1 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 17 Length of query: 351 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 258 Effective length of database: 3,438,538 Effective search space: 887142804 Effective search space used: 887142804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 57 (26.3 bits)