RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 29.2 bits (64), Expect = 0.48
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 263 SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINK-TGKD----GWSAGISAKYMISSG 317
            YY+++   VF      +    T+  GG+Y G + +  G+     G++ G+    ++   
Sbjct: 259 DYYNRT---VFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLL--- 312

Query: 318 LEAQ 321
           ++A 
Sbjct: 313 VQAV 316


>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
           regulatory subunit HisZ {Lactococcus lactis [TaxId:
           1358]}
          Length = 318

 Score = 29.3 bits (64), Expect = 0.57
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 263 SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD----GWSAGISAKYMISSGL 318
            YY    +  ++           I  GG+Y   ++   ++    G+   +     I   L
Sbjct: 262 DYYTDLMFKAYSSAANQ-----PILSGGRYDQLLSNFQEEAFAIGFCCHMDT---ILKAL 313

Query: 319 EAQ 321
           E Q
Sbjct: 314 ERQ 316


>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 324

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 263 SYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKD-----GWSAGISAKYMISSG 317
            YY     + F  +  ++     + GGG+Y G     G       G++ G+    +    
Sbjct: 261 DYYV---RTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALA--- 314

Query: 318 LEAQ 321
           LEA+
Sbjct: 315 LEAE 318


>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 301

 Score = 25.7 bits (55), Expect = 5.6
 Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 5/119 (4%)

Query: 211 YMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKY 270
              +      +  +      G  NV                       +   +  D   Y
Sbjct: 173 PDTALMADMEQLELAAIAKFGATNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAY 232

Query: 271 SVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDN 329
            +     F          GG        T  D    G+ A Y +  G      +A ND 
Sbjct: 233 GLSVDSTFGATTV-----GGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDL 286


>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli
           [TaxId: 562]}
          Length = 297

 Score = 25.2 bits (55), Expect = 9.2
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 299 TGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKG 334
             ++ +S  ++A Y ++   +     A+N    KKG
Sbjct: 226 KDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKG 261


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,218,974
Number of extensions: 53875
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 13
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)