BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] (351 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/351 (100%), Positives = 351/351 (100%) Query: 1 MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60 MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL Sbjct: 1 MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60 Query: 61 EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES 120 EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES Sbjct: 61 EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES 120 Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL 180 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL Sbjct: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL 180 Query: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN Sbjct: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240 Query: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG Sbjct: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300 Query: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF Sbjct: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351 >gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 27.7 bits (60), Expect = 0.29, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 20/36 (55%) Query: 235 VAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKY 270 +A AN VSRA +D A WA +N + KS++ Sbjct: 174 IAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQW 209 >gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 26.9 bits (58), Expect = 0.54, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQ 205 D+ +S Y H+ G+ KAG L + L Q Sbjct: 236 DRSLSAQYEHTIGITKAGCEIFTLSPNNLGQ 266 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 15/94 (15%) Query: 28 GKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87 GKTS++ R + + G++G + HI G+ + + Q + N D P Sbjct: 395 GKTSLLDAIRKADVAKGEIGGITQHI----GAYQVAYQGK----------NITFLDTPGH 440 Query: 88 GNL-EVNANAGDVTGVAKLKLAVDDVLSMQFAES 120 E+ A VT +A L LA D+ + Q ES Sbjct: 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIES 474 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.131 0.369 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,041 Number of Sequences: 1233 Number of extensions: 8992 Number of successful extensions: 20 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 7 length of query: 351 length of database: 328,796 effective HSP length: 75 effective length of query: 276 effective length of database: 236,321 effective search space: 65224596 effective search space used: 65224596 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 39 (19.6 bits)