BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780314|ref|YP_003064727.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 351

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60
           MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL
Sbjct: 1   MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSL 60

Query: 61  EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES 120
           EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES
Sbjct: 61  EKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAES 120

Query: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL 180
           DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL
Sbjct: 121 DVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSL 180

Query: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240
           SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN
Sbjct: 181 SYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRAN 240

Query: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300
           ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG
Sbjct: 241 ISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTG 300

Query: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351
           KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF
Sbjct: 301 KDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF 351


>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 27.7 bits (60), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 235 VAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKY 270
           +A  AN    VSRA  +D  A WA  +N  + KS++
Sbjct: 174 IAKLANTIFSVSRAHCIDPIAAWAEHNNFLHQKSQW 209


>gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 273

 Score = 26.9 bits (58), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQ 205
           D+ +S  Y H+ G+ KAG     L  + L Q
Sbjct: 236 DRSLSAQYEHTIGITKAGCEIFTLSPNNLGQ 266


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 25.4 bits (54), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 15/94 (15%)

Query: 28  GKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVK 87
           GKTS++   R  + + G++G +  HI    G+ + + Q +          N    D P  
Sbjct: 395 GKTSLLDAIRKADVAKGEIGGITQHI----GAYQVAYQGK----------NITFLDTPGH 440

Query: 88  GNL-EVNANAGDVTGVAKLKLAVDDVLSMQFAES 120
               E+ A    VT +A L LA D+ +  Q  ES
Sbjct: 441 AAFYEMRARGARVTDIAVLVLAADEEIMPQAIES 474


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.131    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,041
Number of Sequences: 1233
Number of extensions: 8992
Number of successful extensions: 20
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 7
length of query: 351
length of database: 328,796
effective HSP length: 75
effective length of query: 276
effective length of database: 236,321
effective search space: 65224596
effective search space used: 65224596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 39 (19.6 bits)