HHsearch alignment for GI: 254780316 and conserved domain: COG0016
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=98.78 E-value=3.7e-07 Score=69.98 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHH-HHH-------HHCCCCCCCCCCCCCCCCHHHCHHHH
Q ss_conf 67899889546789887877877402321004825765--520-000-------00002467764321015122110677
Q gi|254780316|r 485 KRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV--LFG-GGQ-------RELEILNPISADMSNMRTSLLPGLLK 554 (805)
Q Consensus 485 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~--~~~-~~~-------~~i~l~NPlS~e~s~lR~SLlp~LL~ 554 (805)
T Consensus 107 ~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp-~IE~d~~NFDaLn~P~dHPARdmqDTFy~-~~-~~~~~lLRTHTs~vq~R 183 (335)
T COG0016 107 PGSLHPLTQTIEEIEDIFLGMGFTEVEGP-EIETDFYNFDALNIPQDHPARDMQDTFYL-KD-DREKLLLRTHTSPVQAR 183 (335)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEECCCC-CCCCCCCCHHHHCCCCCCCCCCCCCEEEE-CC-CCCCEEECCCCCHHHHH
T ss_conf 89867089999999999997496664588-21320225243249999984124443787-68-87730023668276599
Q ss_pred HHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 64321015861134543024444777544310002210354310124620234544333314688875311111110145
Q gi|254780316|r 555 ATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVS 634 (805)
Q Consensus 555 ~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~ 634 (805)
T Consensus 184 ~l~~~~~---~P~k~~~~grvyR~D~~DaT-Hs~~FhQi-------EGlv-------vd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 184 TLAENAK---IPIKIFSPGRVYRNDTVDAT-HSPEFHQI-------EGLV-------VDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred HHHHCCC---CCCEEECCCCEECCCCCCCC-CCHHEEEE-------EEEE-------EECCCCHHHHHHHHHHHHHHHCC
T ss_conf 9984799---99158456634117887764-26101336-------7899-------95895699999999999999637
Q ss_pred CC-CEEEECCCCCCCCCCCEEEEEECCE---EEEEEEEEECHHHHHHCCC-CCCEE--EEEEEHHHHHHH
Q ss_conf 33-3033058865678981699998792---9999985477899996687-99789--999878762354
Q gi|254780316|r 635 LD-SLRFESGAPSWYHPGRSGIIKTSAE---IVLGYFGEFHPNILDFFGL-SNPIC--GFEVYLDSIPIS 697 (805)
Q Consensus 635 ~~-~~~~~~~~~~~~hPgrsa~I~~~gk---~iiG~iG~ihP~i~~~~~i-~~~v~--~~EI~ld~L~~~ 697 (805)
T Consensus 246 ~~~~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAML 315 (335)
T COG0016 246 EDVKVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAML 315 (335)
T ss_pred CCCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 7763576068789899717899997687868998356545788897459998760588874048899999