HHsearch alignment for GI: 254780316 and conserved domain: COG0016

>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=98.78  E-value=3.7e-07  Score=69.98  Aligned_cols=192  Identities=16%  Similarity=0.195  Sum_probs=129.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHH-HHH-------HHCCCCCCCCCCCCCCCCHHHCHHHH
Q ss_conf             67899889546789887877877402321004825765--520-000-------00002467764321015122110677
Q gi|254780316|r  485 KRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV--LFG-GGQ-------RELEILNPISADMSNMRTSLLPGLLK  554 (805)
Q Consensus       485 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~--~~~-~~~-------~~i~l~NPlS~e~s~lR~SLlp~LL~  554 (805)
T Consensus       107 ~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp-~IE~d~~NFDaLn~P~dHPARdmqDTFy~-~~-~~~~~lLRTHTs~vq~R  183 (335)
T COG0016         107 PGSLHPLTQTIEEIEDIFLGMGFTEVEGP-EIETDFYNFDALNIPQDHPARDMQDTFYL-KD-DREKLLLRTHTSPVQAR  183 (335)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCEECCCC-CCCCCCCCHHHHCCCCCCCCCCCCCEEEE-CC-CCCCEEECCCCCHHHHH
T ss_conf             89867089999999999997496664588-21320225243249999984124443787-68-87730023668276599


Q ss_pred             HHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             64321015861134543024444777544310002210354310124620234544333314688875311111110145
Q gi|254780316|r  555 ATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVS  634 (805)
Q Consensus       555 ~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~  634 (805)
T Consensus       184 ~l~~~~~---~P~k~~~~grvyR~D~~DaT-Hs~~FhQi-------EGlv-------vd~~~s~~~Lkg~L~~f~~~~fg  245 (335)
T COG0016         184 TLAENAK---IPIKIFSPGRVYRNDTVDAT-HSPEFHQI-------EGLV-------VDKNISFADLKGTLEEFAKKFFG  245 (335)
T ss_pred             HHHHCCC---CCCEEECCCCEECCCCCCCC-CCHHEEEE-------EEEE-------EECCCCHHHHHHHHHHHHHHHCC
T ss_conf             9984799---99158456634117887764-26101336-------7899-------95895699999999999999637


Q ss_pred             CC-CEEEECCCCCCCCCCCEEEEEECCE---EEEEEEEEECHHHHHHCCC-CCCEE--EEEEEHHHHHHH
Q ss_conf             33-3033058865678981699998792---9999985477899996687-99789--999878762354
Q gi|254780316|r  635 LD-SLRFESGAPSWYHPGRSGIIKTSAE---IVLGYFGEFHPNILDFFGL-SNPIC--GFEVYLDSIPIS  697 (805)
Q Consensus       635 ~~-~~~~~~~~~~~~hPgrsa~I~~~gk---~iiG~iG~ihP~i~~~~~i-~~~v~--~~EI~ld~L~~~  697 (805)
T Consensus       246 ~~~~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAML  315 (335)
T COG0016         246 EDVKVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAML  315 (335)
T ss_pred             CCCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCCEEEEEEECHHHHHHH
T ss_conf             7763576068789899717899997687868998356545788897459998760588874048899999