HHsearch alignment for GI: 254780316 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.27 E-value=0.0002 Score=50.65 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCHHHCHHHHHHHHHCCCCCC-HHH
Q ss_conf 9546789887877877402321004825765520000000024677--6432101512211067764321015861-134
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPI--SADMSNMRTSLLPGLLKATGRNVDRAIA-DFA 568 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPl--S~e~s~lR~SLlp~LL~~~~~N~~r~~~-~i~ 568 (805)
T Consensus 243 Gkler~it~ffvdrGfleiksPiliP~ey~ermGi~nd-telskqifrvdkn~ClrPmlaP~lynylrk-ldr~lP~Pik 320 (453)
T TIGR02367 243 GKLEREITKFFVDRGFLEIKSPILIPLEYVERMGIDND-TELSKQIFRVDKNLCLRPMLAPTLYNYLRK-LDRILPDPIK 320 (453)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHCCCCEE
T ss_conf 46766676665312402323631010568865077640-256666664410010121000568999999-8753789647
Q ss_pred HHHHCCCCCCCCCCCC---C-EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 5430244447775443---1-00022103543101246202345443333146888753111111101453330330588
Q gi|254780316|r 569 IFEVSHVYENDTPEGQ---K-YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGA 644 (805)
Q Consensus 569 lFEiG~Vf~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~ 644 (805)
T Consensus 321 ~fe~GPCyrkesdGkehleeftm~nfCqmG------sGCt-------------renle~~i~~fl~~l~----idf~ivG 377 (453)
T TIGR02367 321 VFEVGPCYRKESDGKEHLEEFTMLNFCQMG------SGCT-------------RENLEALIKEFLDYLE----IDFKIVG 377 (453)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCC------CCCC-------------HHHHHHHHHHHHHHHC----CCEEEEC
T ss_conf 986067524356533566666655543147------8732-------------6779999999887615----4247852
Q ss_pred CCCCCCCCEEEEEECCEEE--EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHH
Q ss_conf 6567898169999879299--999854778999966879978999987876235452
Q gi|254780316|r 645 PSWYHPGRSGIIKTSAEIV--LGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQK 699 (805)
Q Consensus 645 ~~~~hPgrsa~I~~~gk~i--iG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~ 699 (805)
T Consensus 378 dsCmvyGdtld~mh-GdlelssavvGP~~--ldreWGidkPWiGaGfGlerllkv~h 431 (453)
T TIGR02367 378 DSCMVYGDTLDVMH-GDLELSSAVVGPVS--LDREWGIDKPWIGAGFGLERLLKVKH 431 (453)
T ss_pred CEEEEECCHHEEEE-CCHHHCCEEECCCC--CCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 42465335010001-32000000223632--23013788872125323678887763