HHsearch alignment for GI: 254780316 and conserved domain: cd02153
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.91 E-value=3.1e-24 Score=191.15 Aligned_cols=93 Identities=42% Similarity=0.667 Sum_probs=85.3
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCC-----CCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCH
Q ss_conf 4899999975657998-70899975999579897548345-----58978989668779258983983312058650545
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNV-----RVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGM 117 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv-----~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GM 117 (805)
T Consensus 1 l~Vg~I~~~~~hp~adkL~~~~Vd~G~~~~~~iv~g~~n~~~~~~l~g~~v~~~----------~ni~~~ki~Gv~S~GM 70 (99)
T cd02153 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVA----------VNLKPKKLRGVESEGM 70 (99)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCEEEEE----------EEEEECEEECCCCCEE
T ss_conf 979999998858999877899999589948999955512068356159899999----------8230010405446549
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 41188769985477507816888888455
Q gi|254780316|r 118 MCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 118 lCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
T Consensus 71 l~s~~elg~~~~~~~il~~~~~~~~G~~v 99 (99)
T cd02153 71 LLSAEELGLEEGSVGILELPEDAPVGDRI 99 (99)
T ss_pred EEECHHCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 98953348888977999899997788929