HHsearch alignment for GI: 254780316 and conserved domain: cd02153

>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.91  E-value=3.1e-24  Score=191.15  Aligned_cols=93  Identities=42%  Similarity=0.667  Sum_probs=85.3

Q ss_pred             EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCC-----CCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCH
Q ss_conf             4899999975657998-70899975999579897548345-----58978989668779258983983312058650545
Q gi|254780316|r   44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNV-----RVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGM  117 (805)
Q Consensus        44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv-----~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GM  117 (805)
T Consensus         1 l~Vg~I~~~~~hp~adkL~~~~Vd~G~~~~~~iv~g~~n~~~~~~l~g~~v~~~----------~ni~~~ki~Gv~S~GM   70 (99)
T cd02153           1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVA----------VNLKPKKLRGVESEGM   70 (99)
T ss_pred             CEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCEEEEE----------EEEEECEEECCCCCEE
T ss_conf             979999998858999877899999589948999955512068356159899999----------8230010405446549


Q ss_pred             HHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf             41188769985477507816888888455
Q gi|254780316|r  118 MCSEKELMLSDDSASIMELPIDAPVGGRL  146 (805)
Q Consensus       118 lCS~~ELgl~~~~~gI~~l~~~~~~G~~~  146 (805)
T Consensus        71 l~s~~elg~~~~~~~il~~~~~~~~G~~v   99 (99)
T cd02153          71 LLSAEELGLEEGSVGILELPEDAPVGDRI   99 (99)
T ss_pred             EEECHHCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             98953348888977999899997788929