HHsearch alignment for GI: 254780316 and conserved domain: cd02796
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.98 E-value=3.4e-32 Score=247.62 Aligned_cols=102 Identities=48% Similarity=0.834 Sum_probs=98.9
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHH
Q ss_conf 4899999975657998-708999759995798975483455897898966877925898398331205865054541188
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEK 122 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ 122 (805)
T Consensus 1 vvvgkI~~~~~hP~adkL~~~~Vd~g~~~~~~Iv~ga~n~~~g~~vvva~~Gs~l~-~g~~i~~~~i~Gv~S~GMlcS~~ 79 (103)
T cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVRAGDKVVVALPGAVLP-GGLKIKKRKLRGVESEGMLCSAK 79 (103)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCHHHCCCEEEEECCCCEEC-CCCCCCCCEECCEECCCEECCHH
T ss_conf 98999999785899998899999858956999854998577798999972687942-77620320105721270786788
Q ss_pred HCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 769985477507816888888455
Q gi|254780316|r 123 ELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 123 ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
T Consensus 80 ELGl~~~~~gi~~l~~~~~~G~~~ 103 (103)
T cd02796 80 ELGLGEDSDGIIELPEDAPVGTDI 103 (103)
T ss_pred HCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 979998898779999999898979