HHsearch alignment for GI: 254780316 and conserved domain: cd02796

>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.98  E-value=3.4e-32  Score=247.62  Aligned_cols=102  Identities=48%  Similarity=0.834  Sum_probs=98.9

Q ss_pred             EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHH
Q ss_conf             4899999975657998-708999759995798975483455897898966877925898398331205865054541188
Q gi|254780316|r   44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEK  122 (805)
Q Consensus        44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~  122 (805)
T Consensus         1 vvvgkI~~~~~hP~adkL~~~~Vd~g~~~~~~Iv~ga~n~~~g~~vvva~~Gs~l~-~g~~i~~~~i~Gv~S~GMlcS~~   79 (103)
T cd02796           1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVRAGDKVVVALPGAVLP-GGLKIKKRKLRGVESEGMLCSAK   79 (103)
T ss_pred             CEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCHHHCCCEEEEECCCCEEC-CCCCCCCCEECCEECCCEECCHH
T ss_conf             98999999785899998899999858956999854998577798999972687942-77620320105721270786788


Q ss_pred             HCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf             769985477507816888888455
Q gi|254780316|r  123 ELMLSDDSASIMELPIDAPVGGRL  146 (805)
Q Consensus       123 ELgl~~~~~gI~~l~~~~~~G~~~  146 (805)
T Consensus        80 ELGl~~~~~gi~~l~~~~~~G~~~  103 (103)
T cd02796          80 ELGLGEDSDGIIELPEDAPVGTDI  103 (103)
T ss_pred             HCCCCCCCCCEEECCCCCCCCCCC
T ss_conf             979998898779999999898979