HHsearch alignment for GI: 254780316 and conserved domain: pfam01409

>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=99.02  E-value=9.7e-09  Score=81.22  Aligned_cols=191  Identities=17%  Similarity=0.206  Sum_probs=134.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHH-HH-------HHHCCCCCCCCCCCCCCCCHHHCHHHHH
Q ss_conf             6789988954678988787787740232100482576-5520-00-------0000024677643210151221106776
Q gi|254780316|r  485 KRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQS-VLFG-GG-------QRELEILNPISADMSNMRTSLLPGLLKA  555 (805)
Q Consensus       485 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~-~~~~-~~-------~~~i~l~NPlS~e~s~lR~SLlp~LL~~  555 (805)
T Consensus        13 ~G~~HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~~~~~~~~vLRtHTS~~q~r~   92 (243)
T pfam01409        13 PGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKKPLKARRLLLRTHTTPVQART   92 (243)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHHH
T ss_conf             99858599999999999987798687698356427777755789889876767603433666676865768798899999


Q ss_pred             HHHHCCCCCCHHHHHHHCCCCCCCCCCCCC----EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             432101586113454302444477754431----0002210354310124620234544333314688875311111110
Q gi|254780316|r  556 TGRNVDRAIADFAIFEVSHVYENDTPEGQK----YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEP  631 (805)
Q Consensus       556 ~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~  631 (805)
T Consensus        93 l~~~---~~~p~r~~~~grvyR~d~~DatH~~~FhQ~Eg~v-------------------vd~~it~~~Lk~~l~~~~~~  150 (243)
T pfam01409        93 LAEK---NKPPIKIFSIGRVFRRDQVDATHLPEFHQVEGLV-------------------VDENVSFADLKGVLEEFLRK  150 (243)
T ss_pred             HHHC---CCCCEEEECCCEEEECCCCCCCCCCEEEEEEEEE-------------------ECCCCCHHHHHHHHHHHHHH
T ss_conf             9742---7998489814313325889843153105755789-------------------65777899999999999999


Q ss_pred             CC-CCCCEEEECCCCCCCCCCCEEEEEE--CCE-EEEEEEEEECHHHHHHCCCC--CCEEEEEEEHHHHHHH
Q ss_conf             14-5333033058865678981699998--792-99999854778999966879--9789999878762354
Q gi|254780316|r  632 FV-SLDSLRFESGAPSWYHPGRSGIIKT--SAE-IVLGYFGEFHPNILDFFGLS--NPICGFEVYLDSIPIS  697 (805)
Q Consensus       632 l~-~~~~~~~~~~~~~~~hPgrsa~I~~--~gk-~iiG~iG~ihP~i~~~~~i~--~~v~~~EI~ld~L~~~  697 (805)
T Consensus       151 lfg~~~~~R~rp~yFPFTePS~Evdv~~~~~~~WlEi~G~Gmv~p~vl~~~gid~~~~g~AfG~GlERlaMl  222 (243)
T pfam01409       151 FFGFEVKVRFRPSYFPFTEPSAEVDVYCCKGGGWIEIGGAGMVHPNVLEAVGIDEDYPGFAFGLGVERLAML  222 (243)
T ss_pred             HCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHH
T ss_conf             739973798678869999986179999964997258750366678899866989897699985348899999