HHsearch alignment for GI: 254780316 and conserved domain: pfam01588
>pfam01588 tRNA_bind Putative tRNA binding domain. This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation.
Probab=99.84 E-value=2.3e-21 Score=170.87 Aligned_cols=93 Identities=35% Similarity=0.519 Sum_probs=83.0
Q ss_pred EEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHH
Q ss_conf 4899999975657998-708999759995798975483455897898966877925898398331205865054541188
Q gi|254780316|r 44 FTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEK 122 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ 122 (805)
T Consensus 1 irVg~I~~~~~hp~adkL~~~~Vd~G~-~~~~ivsg~~~~~~~~~l-vg~~v~~~~-n---lk~~ki~Gv~S~GMlls~~ 74 (94)
T pfam01588 1 LRVGKVLEAEKHPNADKLLVLKVDVGE-EERQIVSGAVNVYPPEEL-VGKLVVVVA-N---LKPAKLRGVESEGMILSAE 74 (94)
T ss_pred CEEEEEEEEEECCCCCEEEEEEEECCC-CEEEEEECCCCEEEEEEE-EEEEEEEEC-C---CCCCCCCCCCCCEEEEEEE
T ss_conf 979999999989999878999999079-769999747543614136-610799940-7---7851497836888999888
Q ss_pred HCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 76998547750781688888845
Q gi|254780316|r 123 ELMLSDDSASIMELPIDAPVGGR 145 (805)
Q Consensus 123 ELgl~~~~~gI~~l~~~~~~G~~ 145 (805)
T Consensus 75 e---~~~~~~ll~~~~~~~~G~r 94 (94)
T pfam01588 75 E---DGGSVGLLEPPGDVPPGTR 94 (94)
T ss_pred C---CCCCEEEEECCCCCCCCCC
T ss_conf 5---7996899989999746989