HHsearch results for GI: 254780316 and protein with PDBid: 1gd7_A
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=99.45 E-value=1.2e-13 Score=114.53 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=71.6
Q ss_pred CEEEEEEEEEEECCCCC--CCEEEEECCCCCEEEEECCCCCCC-----CCCEEEEECCCCEECCCCEEEEEEHHCCCCCC
Q ss_conf 74899999975657998--708999759995798975483455-----89789896687792589839833120586505
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD--CAILRIDTGKHQEIQVVCGAPNVR-----VGLLGVWAPPGSCIPENNMIVNVRKIRGIEST 115 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad--l~v~~Vd~g~~~~~~IvcgA~Nv~-----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~ 115 (805)
.+.||+|+++++||+|| |.+++||+|+.+.+|||||..+.. .|.+|++.. | +|++||||++|+
T Consensus 11 dirVG~I~~~e~~p~adK~l~~l~VD~G~~~~r~ivsgi~~~~~~e~LiGk~Vv~v~-------N---lkp~ki~Gv~Se 80 (109)
T 1gd7_A 11 DLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAV-------N---LGAKRVAGFLSE 80 (109)
T ss_dssp CEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEEC-------S---SCCEEETTEEEC
T ss_pred CEEEEEEEEEEECCCHHHHHHHEECCCCCCCEEEEEEEHHCCCCHHHHCCCEEEEEE-------C---CCCCEECCCCCC
T ss_conf 479999999998677146454301204887148987400312698895799899998-------6---787627881378
Q ss_pred CHHHHHHHCCCCCCCCCEEEE--CCCCCCCCCH
Q ss_conf 454118876998547750781--6888888455
Q gi|254780316|r 116 GMMCSEKELMLSDDSASIMEL--PIDAPVGGRL 146 (805)
Q Consensus 116 GMlCS~~ELgl~~~~~gI~~l--~~~~~~G~~~ 146 (805)
||+++ .++++.++..| ++++++|+.+
T Consensus 81 gMiL~-----~~~~~~~~~ll~p~~~~~~G~rv 108 (109)
T 1gd7_A 81 VLVLG-----VPDEAGRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp SEECE-----EECTTSCEEEEEESSCCCTTCBC
T ss_pred EEEEE-----EECCCCCEEEECCCCCCCCCCCC
T ss_conf 79998-----88799929997389999798822