HHsearch results for GI: 254780316 and protein with PDBid: 1mkh_A

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=99.81  E-value=2.8e-21  Score=168.72  Aligned_cols=94  Identities=17%  Similarity=0.334  Sum_probs=82.1

Q ss_pred             CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf             74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r   43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE  121 (805)
Q Consensus        43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~  121 (805)
                      .++||+|+++++||+|| |++|+||+|+ +.+||||||+|+..+    -+++|+.++ ..+.|+++||||+.|+|||||+
T Consensus        12 dirVG~I~~~~~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~----~~l~G~~v~-~~~nlk~~ki~Gv~SeGMl~s~   85 (107)
T 1mkh_A           12 DLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKP----EELLNRYVV-VVANLEPKKLRGIGSQGMLLAA   85 (107)
T ss_dssp             CEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCH----HHHTTCEEE-EETTSCCEEC-CCEECCCBCEE
T ss_pred             EEEEEEEEEEEECCCCCCEEEEEEECCC-EEEEEEEECCEEECC----CCCCCCEEE-EECCCCCCCCCCCCCCEEEEEE
T ss_conf             0799999998878999822899998189-457899600104173----010698985-6148886479981478899853


Q ss_pred             HHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf             8769985477507816888888455
Q gi|254780316|r  122 KELMLSDDSASIMELPIDAPVGGRL  146 (805)
Q Consensus       122 ~ELgl~~~~~gI~~l~~~~~~G~~~  146 (805)
                      .|    +++.+++.+|+++++|+++
T Consensus        86 ~e----~~~~~ll~~~~~~~~G~~v  106 (107)
T 1mkh_A           86 DD----GERVALLMPDKEVKLGAKV  106 (107)
T ss_dssp             EC----SSCEEECCCSSCCCTTCEE
T ss_pred             EC----CCCEEEEECCCCCCCCCCC
T ss_conf             56----9917998689998888806