HHsearch results for GI: 254780316 and protein with PDBid: 1mkh_A
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=99.81 E-value=2.8e-21 Score=168.72 Aligned_cols=94 Identities=17% Similarity=0.334 Sum_probs=82.1
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
.++||+|+++++||+|| |++|+||+|+ +.+||||||+|+..+ -+++|+.++ ..+.|+++||||+.|+|||||+
T Consensus 12 dirVG~I~~~~~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~----~~l~G~~v~-~~~nlk~~ki~Gv~SeGMl~s~ 85 (107)
T 1mkh_A 12 DLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKP----EELLNRYVV-VVANLEPKKLRGIGSQGMLLAA 85 (107)
T ss_dssp CEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCH----HHHTTCEEE-EETTSCCEEC-CCEECCCBCEE
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEECCC-EEEEEEEECCEEECC----CCCCCCEEE-EECCCCCCCCCCCCCCEEEEEE
T ss_conf 0799999998878999822899998189-457899600104173----010698985-6148886479981478899853
Q ss_pred HHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 8769985477507816888888455
Q gi|254780316|r 122 KELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
.| +++.+++.+|+++++|+++
T Consensus 86 ~e----~~~~~ll~~~~~~~~G~~v 106 (107)
T 1mkh_A 86 DD----GERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp EC----SSCEEECCCSSCCCTTCEE
T ss_pred EC----CCCEEEEECCCCCCCCCCC
T ss_conf 56----9917998689998888806