HHsearch results for GI: 254780316 and protein with PDBid: 1pyb_A
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=99.71 E-value=9.3e-18 Score=143.69 Aligned_cols=89 Identities=31% Similarity=0.402 Sum_probs=74.2
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCC-----CCCEEEEECCCCEECCCCEEEEEEHHCCCCCCC
Q ss_conf 74899999975657998-708999759995798975483455-----897898966877925898398331205865054
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVR-----VGLLGVWAPPGSCIPENNMIVNVRKIRGIESTG 116 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~-----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~G 116 (805)
.++||+|+++++||||| |++|+||+|+ +.+|||||+.|.. .|.+|++.. .+|++||||++|+|
T Consensus 16 dirVG~I~~~e~hp~AdkL~~~~Vd~G~-~~~~iv~g~~~~~~~e~lig~~v~~v~----------Nlkp~kirGv~SeG 84 (111)
T 1pyb_A 16 DLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVA----------NLKPRKIFGIESQG 84 (111)
T ss_dssp CEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEET----------TSCSSCTTSCCBSS
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCC-CEEEEEEEECCCCCHHHHCCCEEEEEE----------CCCCCEECCCCCCE
T ss_conf 4899999999866885201877830487-100688600231280351463368886----------04763176843327
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 541188769985477507816888888455
Q gi|254780316|r 117 MMCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 117 MlCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
|+||+.+ +++.+++..|+++++|+.+
T Consensus 85 Mil~~~d----~~~~~ll~p~~~~~~G~~i 110 (111)
T 1pyb_A 85 MILAASD----GENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp EECEEEC----SSCEEEEEESSCCCTTEEC
T ss_pred EEEEEEC----CCCEEEEECCCCCCCCCCC
T ss_conf 9998866----9966998689998898866