HHsearch results for GI: 254780316 and protein with PDBid: 2du3_A
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.12 E-value=2e-09 Score=84.51 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=114.4
Q ss_pred CCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67764321015122110677643210158611345430244447775443100022103543101246202345443333
Q gi|254780316|r 535 NPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCR 614 (805)
Q Consensus 535 NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 614 (805)
.|.| ...+|||..-++-..++.+-..++.+.+|+|-+|+||+++......+.....+.. |.. -..
T Consensus 175 ~~~s-~~~lLRTHTS~~q~~~lr~l~~~~~~Piri~s~GrVyRrD~aiDatH~~~FhQvE-------Glv-------Vd~ 239 (534)
T 2du3_A 175 KPIS-STLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSAS-------CVL-------VDE 239 (534)
T ss_dssp CCEE-EEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEE-------EEE-------ECS
T ss_pred CCCC-CCEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEE-------EEE-------ECC
T ss_conf 3323-0002203567216999999973689985896156222356556543174105710-------488-------669
Q ss_pred CCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEE------------CCE-EEEEEEEEECHHHHHHCCC
Q ss_conf 146888753111111101453-33033058865678981699998------------792-9999985477899996687
Q gi|254780316|r 615 FVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKT------------SAE-IVLGYFGEFHPNILDFFGL 680 (805)
Q Consensus 615 ~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~------------~gk-~iiG~iG~ihP~i~~~~~i 680 (805)
.++|-++||.++.++..++.. -.+++.++-.+++.|+-..+++. +++ .-+|-+|.+||.+++.+||
T Consensus 240 ~vs~~dLkg~L~~fl~~~f~~~~k~R~rpsyFPFtePs~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P~VL~~~GI 319 (534)
T 2du3_A 240 ELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDI 319 (534)
T ss_dssp SCCHHHHHHHHHHHHGGGTCCEEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf 88899999999999999768775797468879999995347999950588655557589669996774668788864698
Q ss_pred CCCEEEEEEEHHHHHHHHHCCCCCCCCCC---CCCCCCCEEEEEEE
Q ss_conf 99789999878762354520245663136---89888720018999
Q gi|254780316|r 681 SNPICGFEVYLDSIPISQKKRTKTKKVVH---LSSLHPVKRDLAFI 723 (805)
Q Consensus 681 ~~~v~~~EI~ld~L~~~~~~~~~~~~~~~---~s~fP~v~RDls~i 723 (805)
+.++++|-+-+|.|............... .+....+.+|++=.
T Consensus 320 dy~g~AfGlGlERLAML~ygI~DIR~Ly~p~~~~~~~~sD~~~~~~ 365 (534)
T 2du3_A 320 PYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIARE 365 (534)
T ss_dssp CSCEEEEEEEHHHHHHHHTTCSCHHHHHCTTTTTCCCCCHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 9877998652889999871996688751776661002667999850