HHsearch results for GI: 254780316 and protein with PDBid: 2du7_A
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.18 E-value=6.2e-10 Score=88.17 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 32101512211067764321015861134543024444777544310002210354310124620234544333314688
Q gi|254780316|r 540 DMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLF 619 (805)
Q Consensus 540 e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~ 619 (805)
...+|||..-++...++..-.++..+.+++|-+|+||+++.-....+.....+.... .-...+.|-
T Consensus 191 ~~llLRTHTS~~q~r~l~~l~e~~~~Pir~~s~GrVyRrD~i~D~tH~~~FhQ~Egl--------------vvd~~vt~~ 256 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCV--------------VVGEDVSVD 256 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEE--------------EECTTCCHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEEE--------------EECCCCCHH
T ss_conf 011413668712599999998527998056336654445555642117877377768--------------960787899
Q ss_pred HHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEE----CCE-EEEEEEEEECHHHHHHCCCCCCEEEEEEEHHH
Q ss_conf 8753111111101453-33033058865678981699998----792-99999854778999966879978999987876
Q gi|254780316|r 620 DAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKT----SAE-IVLGYFGEFHPNILDFFGLSNPICGFEVYLDS 693 (805)
Q Consensus 620 dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~----~gk-~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~ 693 (805)
++|+.++.++..++.. -.+++.++-.+|.+|+-..+++. .|+ .-+|-+|.+||.+++++|+..++++|-+-+|.
T Consensus 257 dLK~~L~~f~~~~~~~~~k~R~~~syFPfTePs~EveV~~~~~~~g~WlEIlGcGmv~P~VL~~~Gid~~g~AfGlGlER 336 (549)
T 2du7_A 257 DGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVER 336 (549)
T ss_dssp HHHHHHHHHHGGGTCCCCCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEEEEEEBHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECHHH
T ss_conf 99999999999977988389878888899999657899997088981899957847788999856979876898763999
Q ss_pred HHHHHHCCCCCCC--CCCCCCCCCCEEEEEEE-----ECCCCCHHHHHHH
Q ss_conf 2354520245663--13689888720018999-----6688799999999
Q gi|254780316|r 694 IPISQKKRTKTKK--VVHLSSLHPVKRDLAFI-----VDQHIPAGTLVNI 736 (805)
Q Consensus 694 L~~~~~~~~~~~~--~~~~s~fP~v~RDls~i-----v~~~v~~~~I~~~ 736 (805)
|......-..... +..+-..-.+.||||=. +|....-.++...
T Consensus 337 LAMl~ygI~DIR~Ly~p~~~~~~~sd~~~a~~i~~~~~p~t~~~~~~~~~ 386 (549)
T 2du7_A 337 LAMIIYGYEDVRAMVYPQFYEYRLSDRDIAGMIRVDKVPILDEFYNFANE 386 (549)
T ss_dssp HHHHHTTCSCSHHHHSSSSSCCCCCHHHHHTTCCCSCCCSSHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99997299767764167554243663055445413247664789999999