HHsearch results for GI: 254780316 and protein with PDBid: 2odr_B

>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=100.00  E-value=0  Score=460.37  Aligned_cols=406  Identities=13%  Similarity=0.090  Sum_probs=310.1

Q ss_pred             HHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCC----CCCHH
Q ss_conf             87616540155441345530135889998887521233455565258741355431000043113333113----45878
Q gi|254780316|r  347 GKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGI----DVPIE  422 (805)
Q Consensus       347 ar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~----~i~~~  422 (805)
                      -..+||+||||+|||||+|++++..+++||..+..+++++...               ..+..+.....|.    ....+
T Consensus         8 ~~s~Gl~~d~ShrFer~~~~ela~ka~ErA~~~~~~i~~~~~i---------------d~~lPr~~~~~Gk~HPl~~~ie   72 (648)
T 2odr_B            8 HHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKI---------------NESYPRIKPVFGKTHPVNDTIE   72 (648)
T ss_dssp             ------------------------------------------C---------------TTSGGGCCCCCCBCCHHHHHHH
T ss_pred             CCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---------------CCCCCCCCCCCCCCCCHHHHHH
T ss_conf             4357878305522013456776699999999964443067756---------------5458988877767283899999


Q ss_pred             HHHHHHHHHHHHHHCCC---CCCEEE---ECCCCC---C-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99999998402221034---562366---403454---3-3440256767676535233466765544345767899889
Q gi|254780316|r  423 DSLRILERLGFSVIGEY---DKFEVS---VPSWRQ---D-VEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQ  492 (805)
Q Consensus       423 ei~~iL~~Lgf~v~~~~---~~~~V~---vPs~R~---D-I~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~  492 (805)
                      ++.++|.+|||+.....   +.|.+.   +|+||+   | +..+.|++|||+|+|||||||+..+... . ........+
T Consensus        73 eIr~IL~rLGFee~~~p~Iv~~wnfD~LfvP~~HPaRDDtFyLe~DliEEVaRiyGYdnip~~~p~~~-~-~~~~~~~~~  150 (648)
T 2odr_B           73 NLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKV-S-EHKESLQKI  150 (648)
T ss_dssp             HHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------------
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEECCCCCCCCCCCHHHCCEEECCCCHHHHHCCCCCCCCCCCCCCCC-C-CCCCHHHHH
T ss_conf             99999997798797488373535053106898774420735214763123202245223431245555-4-531013566


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             54678988787787740232100482576552000000002467764321015122110677643210158611345430
Q gi|254780316|r  493 SRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEV  572 (805)
Q Consensus       493 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEi  572 (805)
                      ...+++++.+.+.||+|++||||++++....+.....++.+.||+++++++|||+++|||+.++++|++|+.+++++||+
T Consensus       151 ~~~~k~r~~l~~~G~~Evitysfv~~~~~~~~~~~~~~v~l~NPisSe~~vLRTh~~~gll~~l~~n~~r~~~pirlFEi  230 (648)
T 2odr_B          151 LHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSI  230 (648)
T ss_dssp             ---------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             66655302222034000321023463443202565552113585532355658877468999999998579998389987


Q ss_pred             CCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCC
Q ss_conf             244447775443100022103543101246202345443333146888753111111101453-3303305886567898
Q gi|254780316|r  573 SHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPG  651 (805)
Q Consensus       573 G~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPg  651 (805)
                      |+||+++....+.+.....+.       .|      | --...+|||++||.+++++..++.. ..+++.+...+++|||
T Consensus       231 GrVFR~D~~~D~tH~~~fhQl-------eG------l-ivg~~vdf~dLKg~le~lL~~Lg~~~~k~r~~~s~~Pf~hPg  296 (648)
T 2odr_B          231 DRCFRREQKEDKSHLMTYHSA-------SC------A-IAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPE  296 (648)
T ss_dssp             EEEECCCSCCCSSCCSEEEEE-------EE------E-EECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTT
T ss_pred             EEEECCCCCCCCCCCCCEEEE-------EE------E-EECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf             778737874424357620047-------89------9-977876889999999999999678873899656778998991


Q ss_pred             CEEEEEECC----EEE-EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEEEE
Q ss_conf             169999879----299-99985477899996687997899998787623545202456--63136898887200189996
Q gi|254780316|r  652 RSGIIKTSA----EIV-LGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKT--KKVVHLSSLHPVKRDLAFIV  724 (805)
Q Consensus       652 rsa~I~~~g----k~i-iG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~--~~~~~~s~fP~v~RDls~iv  724 (805)
                      ++++|++.+    +.+ +|.+|++||.+++++||+.++++|++.+|.|..........  ..+..++.++.+.||+|+.+
T Consensus       297 ~ea~V~~~~~~~~~WlEIgg~G~vHP~VLk~~GId~~V~AFGLGLERLAMlk~gi~DIR~l~~p~f~~~~~s~rdlA~~v  376 (648)
T 2odr_B          297 TQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVASMV  376 (648)
T ss_dssp             CCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCGGGSCCCCCHHHHHTTE
T ss_pred             EEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf             15899998167984899980653179999866969857999963899999873997377760777578885665654422


Q ss_pred             --CCCCCHHHHHHHHHH----CCC--CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHH
Q ss_conf             --688799999999971----110--03576989876367799884269999998477988899999
Q gi|254780316|r  725 --DQHIPAGTLVNIIKN----VDR--LIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDI  783 (805)
Q Consensus       725 --~~~v~~~~I~~~i~~----~~~--ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI  783 (805)
                        ++...+.++..++++    +.+  -.+++.+||+|+|+++++||||++++++.++.++||.+..+
T Consensus       377 ~ldk~p~~~e~~~i~~~i~~~~~~~~~~~s~~~Fdvyeg~~~g~~kKsv~v~v~~~~enk~L~g~~~  443 (648)
T 2odr_B          377 KLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSI  443 (648)
T ss_dssp             EESCCCSSHHHHHHHHHHHHHHHHC----------------------------------------CC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCHHH
T ss_conf             4366864176899999999999863887887078875451479985289999993168876669568