Query gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 805
No_of_seqs 256 out of 2999
Neff 7.5
Searched_HMMs 23785
Date Mon May 30 09:27:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780316.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rhq_B Phenylalanyl-tRNA synth 100.0 0 0 1714.8 63.0 781 1-802 1-795 (795)
2 1b7y_B Phers, protein (phenyla 100.0 0 0 1715.8 56.9 773 1-804 1-781 (785)
3 3l4g_B Phenylalanyl-tRNA synth 100.0 0 0 923.9 24.8 533 108-695 17-589 (589)
4 2cxi_A Phenylalanyl-tRNA synth 100.0 0 0 529.7 16.1 317 1-469 4-348 (348)
5 2odr_A Phosphoseryl-tRNA synth 100.0 0 0 476.8 8.5 405 347-782 8-442 (665)
6 2odr_D Phosphoseryl-tRNA synth 100.0 0 0 471.9 10.3 410 347-783 8-443 (685)
7 2odr_C Phosphoseryl-tRNA synth 100.0 0 0 459.5 9.7 407 347-780 8-440 (701)
8 2odr_B Phosphoseryl-tRNA synth 100.0 0 0 460.4 8.8 406 347-783 8-443 (648)
9 3cmq_A Phenylalanyl-tRNA synth 100.0 1.9E-42 0 318.8 24.9 336 460-803 15-414 (415)
10 3ica_A Phenylalanyl-tRNA synth 100.0 1.5E-42 0 319.6 9.7 206 489-695 4-213 (213)
11 3ig2_A Phenylalanyl-tRNA synth 100.0 6.7E-42 0 315.0 7.3 205 489-695 4-213 (213)
12 3bu2_A Putative tRNA-binding p 100.0 5.2E-36 2.2E-40 273.2 10.3 133 12-148 62-198 (199)
13 1ntg_A Tyrrs, tyrosyl-tRNA syn 99.9 5.5E-25 2.3E-29 195.0 -0.1 143 31-184 1-149 (172)
14 2e8g_A Hypothetical protein PH 99.9 4.3E-22 1.8E-26 174.4 6.1 94 37-143 132-226 (241)
15 1mkh_A Metrs;, C-terminal doma 99.8 2.8E-21 1.2E-25 168.7 1.8 94 43-146 12-106 (107)
16 2nzh_A Protein CSAA; beta barr 99.7 7E-20 2.9E-24 158.7 -3.5 111 29-146 1-112 (113)
17 2cwp_A Metrs related protein; 99.7 1.7E-18 7.1E-23 148.9 3.6 109 27-146 1-111 (112)
18 1fl0_A Endothelial-monocyte ac 99.7 1E-18 4.4E-23 150.4 1.8 96 43-147 7-103 (171)
19 1pyb_A Methionyl-tRNA syntheta 99.7 9.3E-18 3.9E-22 143.7 6.2 89 43-146 16-110 (111)
20 1pxf_A Hypothetical protein YG 99.7 3.9E-17 1.6E-21 139.3 3.8 94 43-146 13-109 (111)
21 2zin_A Pyrrolysyl-tRNA synthet 99.5 8.2E-14 3.5E-18 115.7 10.7 211 489-720 78-291 (291)
22 1gd7_A CSAA protein; oligonucl 99.5 1.2E-13 5E-18 114.5 7.2 89 43-146 11-108 (109)
23 3g48_A Chaperone CSAA; structu 99.4 9.3E-15 3.9E-19 122.4 1.2 88 43-146 14-111 (112)
24 2du7_A O-phosphoseryl-tRNA syn 99.2 6.2E-10 2.6E-14 88.2 12.9 183 540-736 191-386 (549)
25 3l4g_A Phenylalanyl-tRNA synth 99.1 8E-10 3.4E-14 87.4 12.3 218 484-717 220-505 (508)
26 2du3_A O-phosphoseryl-tRNA syn 99.1 2E-09 8.5E-14 84.5 13.3 174 535-723 175-365 (534)
27 1rqg_A Methionyl-tRNA syntheta 99.0 4.3E-11 1.8E-15 96.4 0.0 21 405-425 339-359 (722)
28 2q2h_A AGR_C_4014P, secretion 99.0 1E-09 4.2E-14 86.7 6.4 89 43-146 32-130 (131)
29 2q2i_A AGR_C_4014P, secretion 98.9 1.8E-09 7.5E-14 84.9 5.6 90 43-146 17-115 (116)
30 2rhq_A Phenylalanyl-tRNA synth 98.8 1.8E-07 7.4E-12 70.7 13.3 193 484-698 48-266 (294)
31 1b7y_A Phers, protein (phenyla 98.5 5.2E-07 2.2E-11 67.4 9.3 194 485-698 97-326 (350)
32 3dsq_A Pyrrolysyl-tRNA synthet 98.5 5.6E-07 2.4E-11 67.2 9.5 192 489-699 71-265 (288)
33 3l4g_B Phenylalanyl-tRNA synth 97.2 0.00012 5E-09 50.7 2.6 213 263-511 158-378 (589)
34 2cxi_A Phenylalanyl-tRNA synth 97.1 3.1E-05 1.3E-09 54.8 -1.7 68 403-470 3-76 (348)
35 3hj7_A TRNA(Ile)-lysidine synt 96.4 0.0021 8.6E-08 41.9 3.4 70 265-334 43-127 (142)
36 3od1_A ATP phosphoribosyltrans 95.4 0.0069 2.9E-07 38.1 2.6 102 628-741 255-362 (400)
37 3a2k_A TRNA(Ile)-lysidine synt 94.0 0.035 1.5E-06 33.2 3.3 57 416-473 126-188 (464)
38 3lc0_A Histidyl-tRNA synthetas 93.8 0.016 6.7E-07 35.6 1.3 34 665-699 315-350 (456)
39 3net_A Histidyl-tRNA synthetas 93.7 0.021 8.7E-07 34.8 1.7 54 681-741 341-398 (465)
40 1qe0_A Histidyl-tRNA synthetas 92.4 0.029 1.2E-06 33.7 1.0 90 490-580 18-115 (420)
41 1wu7_A Histidyl-tRNA synthetas 92.1 0.066 2.8E-06 31.2 2.4 86 492-579 24-112 (434)
42 1z7m_A ATP phosphoribosyltrans 90.7 0.12 5E-06 29.4 2.6 49 648-697 284-333 (344)
43 1htt_A Histidyl-tRNA synthetas 90.5 0.14 5.9E-06 28.9 2.8 53 648-702 262-319 (423)
44 1nj8_A Proline-tRNA synthetase 89.5 0.29 1.2E-05 26.6 3.7 93 489-581 39-140 (459)
45 1nyr_A Threonyl-tRNA synthetas 88.0 0.23 9.5E-06 27.4 2.3 149 410-580 213-368 (645)
46 1qf6_A THRRS, threonyl-tRNA sy 87.4 0.19 7.9E-06 28.0 1.6 146 410-581 214-367 (642)
47 1h4v_B Histidyl-tRNA synthetas 86.8 0.28 1.2E-05 26.7 2.3 88 491-579 20-114 (421)
48 3a32_A Probable threonyl-tRNA 86.3 0.37 1.5E-05 25.9 2.6 90 489-580 50-147 (471)
49 3nem_A Aspartyl-tRNA synthetas 84.7 0.36 1.5E-05 26.0 2.0 43 45-90 21-74 (438)
50 1c0a_A Aspartyl tRNA synthetas 83.3 0.68 2.9E-05 24.0 2.9 82 651-734 471-577 (585)
51 2dq3_A Seryl-tRNA synthetase; 83.1 2.1 8.7E-05 20.6 6.9 183 446-637 131-318 (425)
52 1n9w_A Aspartyl-tRNA synthetas 81.2 0.41 1.7E-05 25.6 1.1 34 45-81 18-51 (422)
53 2i4l_A Proline-tRNA ligase; al 77.1 1.4 5.9E-05 21.8 2.8 20 242-261 66-85 (458)
54 1wyd_A Hypothetical aspartyl-t 76.3 0.63 2.7E-05 24.2 0.9 34 44-80 20-53 (429)
55 3ial_A Prolyl-tRNA synthetase; 71.6 0.64 2.7E-05 24.2 -0.0 130 445-580 16-156 (518)
56 3htx_A HEN1; HEN1, small RNA m 71.1 1.8 7.4E-05 21.1 2.1 19 771-789 863-883 (950)
57 3i7f_A Aspartyl-tRNA synthetas 69.7 2.8 0.00012 19.7 2.9 32 683-714 512-543 (548)
58 1e1o_A Lysyl-tRNA synthetase; 69.6 1.4 5.8E-05 21.9 1.3 38 44-84 68-105 (504)
59 1hc7_A Prolyl-tRNA synthetase; 69.6 1.4 5.7E-05 21.9 1.3 92 488-580 44-145 (477)
60 3bju_A Lysyl-tRNA synthetase; 69.3 1.9 7.9E-05 20.9 1.9 60 15-81 34-94 (521)
61 3a5y_A GENX, putative lysyl-tR 67.7 3.2 0.00013 19.3 2.8 113 492-632 40-158 (345)
62 1eov_A ASPRS, aspartyl-tRNA sy 67.1 2.2 9.4E-05 20.4 1.9 36 43-80 38-74 (487)
63 1evl_A Threonyl-tRNA synthetas 65.0 2.9 0.00012 19.5 2.2 89 490-580 32-125 (401)
64 1x54_A Asparaginyl-tRNA synthe 64.6 2.9 0.00012 19.6 2.1 35 44-81 20-54 (434)
65 1nj1_A Proline-tRNA synthetase 62.8 2.9 0.00012 19.6 1.8 91 490-581 73-172 (501)
66 1l0w_A Aspartyl-tRNA synthetas 61.5 3.7 0.00015 18.8 2.2 80 652-735 466-572 (580)
67 3err_A Fusion protein of micro 59.9 7.1 0.0003 16.8 5.8 165 490-656 277-442 (536)
68 1ni5_A Putative cell cycle pro 58.4 4.3 0.00018 18.4 2.1 57 415-472 114-176 (433)
69 1nnh_A Asparaginyl-tRNA synthe 55.8 2.8 0.00012 19.6 0.8 34 683-716 257-290 (294)
70 3a74_A Lysyl-tRNA synthetase; 49.9 6.1 0.00025 17.3 1.7 36 44-82 60-95 (493)
71 2l1n_A Uncharacterized protein 44.1 4.6 0.00019 18.2 0.4 59 404-462 3-64 (120)
72 1usy_A ATP phosphoribosyltrans 37.2 2.9 0.00012 19.6 -1.5 10 683-692 262-271 (275)
73 2rcf_A Unidentified carboxysom 32.7 18 0.00076 13.9 4.9 47 44-92 5-54 (91)
74 2j0s_T Protein CASC3; mRNA pro 32.1 11 0.00047 15.4 0.8 23 448-470 81-107 (150)
75 2xmm_A SSR2857 protein, ATX1; 31.3 19 0.0008 13.7 1.9 19 418-436 46-64 (64)
76 2cja_A Seryl-tRNA synthetase; 31.2 19 0.0008 13.7 3.7 38 541-579 318-358 (522)
77 3mf2_A BLL0957 protein; aminoa 29.0 13 0.00055 14.9 0.7 43 537-580 139-182 (346)
78 1whz_A Hypothetical protein; a 27.4 22 0.00093 13.3 4.6 50 418-469 4-62 (70)
79 1x9z_A DNA mismatch repair pro 26.3 23 0.00097 13.2 3.3 59 398-464 57-116 (188)
80 3ol3_A Putative uncharacterize 26.0 23 0.00098 13.1 2.9 65 411-507 36-100 (107)
81 2nn3_C Caspase-1; cysteine pro 24.6 14 0.0006 14.6 0.2 31 406-436 71-101 (310)
82 3d3r_A Hydrogenase assembly ch 24.4 25 0.001 12.9 5.3 47 45-97 26-74 (103)
83 1lfd_A Ralgds; RAL, effector i 22.6 27 0.0011 12.7 2.1 35 327-361 17-51 (87)
84 2krc_A DNA-directed RNA polyme 22.4 27 0.0011 12.6 1.6 24 248-271 14-37 (99)
85 1kn6_A Prohormone convertase 1 21.7 28 0.0012 12.6 2.2 29 439-474 12-40 (90)
86 1m72_A Caspase-1; caspase, cys 21.5 18 0.00075 13.9 0.2 28 409-436 46-73 (272)
87 1q5q_H Proteasome beta-type su 21.1 21 0.00087 13.5 0.5 21 418-438 204-224 (235)
88 2j3l_A Prolyl-tRNA synthetase; 21.0 29 0.0012 12.5 2.7 19 777-795 551-569 (572)
89 2kc2_A Talin-1, F1; FERM, adhe 20.9 26 0.0011 12.8 1.0 11 723-733 27-37 (128)
90 1kmj_A Selenocysteine lyase; p 20.6 29 0.0012 12.4 6.4 30 766-799 377-406 (406)
91 3fbt_A Chorismate mutase and s 20.2 30 0.0013 12.3 1.8 31 440-471 60-90 (282)
No 1
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=0 Score=1714.77 Aligned_cols=781 Identities=28% Similarity=0.480 Sum_probs=723.2
Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCC-CCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCC
Q ss_conf 977867998847899988999999874586042111246-5687489999997565799870899975999579897548
Q gi|254780316|r 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNRE-ALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGA 79 (805)
Q Consensus 1 M~is~~WL~~~v~~~~~~~~l~~~lt~~G~EVe~i~~~~-~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA 79 (805)
|+||++||+||+|+++++++|+++||++|+|||+++..+ .+++||||+|++++|||| ++|+||+|+++.+||||||
T Consensus 1 M~is~~WL~e~v~~~~~~~~l~~~lt~~G~EVE~~~~~~~~~~~vvvg~v~~~~~hp~---~vc~V~~g~~~~~~IvcgA 77 (795)
T 2rhq_B 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKGSG---NICQVDIGEEEPVQIVCGA 77 (795)
T ss_dssp CEEEHHHHTTTBCCSSCHHHHHHHHHHTTCEEEEEEETTTTCEEEEEEEEEEEECSSS---CEEEEECSSSSCEEEECCC
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCEEEEEEECCCCCCC---CEEEEECCCCCEEEEECCC
T ss_conf 9478899998719998999999998656081127884576779889999935658999---6799986899568898699
Q ss_pred CCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCC------CCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 34558978989668779258983983312058650545411887699854------775078168888884558870888
Q gi|254780316|r 80 PNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDD------SASIMELPIDAPVGGRLSDYLELS 153 (805)
Q Consensus 80 ~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~------~~gI~~l~~~~~~G~~~~~~l~l~ 153 (805)
|||++|++||||+|||+|| |+++||++||||++|+|||||++||||+++ |+|||+||+++++|+++.+|++++
T Consensus 78 ~Nv~~g~~V~vA~~Ga~lp-~~~~i~~~klrGv~S~GMlcS~~ELGl~~~~~~~~~~~gI~~l~~~~~~G~~~~~~l~l~ 156 (795)
T 2rhq_B 78 PNVDAGQHVIVAKVGGRLP-GGIKIKRAKLRGERSEGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLN 156 (795)
T ss_dssp TTCCTTCEEEEEEEEEEET-TTEECCCEEETTEEECSEECCSGGGTCCGGGSCHHHHTSCCBCSSCCCTTSBHHHHTTCS
T ss_pred CCCCCCCEEEEECCCCEEC-CCCEEEEEEECCCCCCCEECCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 7236899999978698947-997896301378326732569878699866676667784598789888996889971899
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 55999870878576655578999877641156666554566777777741589840731112332011232245566377
Q gi|254780316|r 154 DPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNW 233 (805)
Q Consensus 154 D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~w 233 (805)
|++|||++||||||||||+|+||||||+++.+++.|..............+.+.+++++.||+|.+++|+||++++||+|
T Consensus 157 D~iieieitpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~Sp~~ 236 (795)
T 2rhq_B 157 DQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIEPSPIW 236 (795)
T ss_dssp CEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCCCCCHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHH
T ss_conf 83899856898488765888999999874676567632233324456765057630645586465799626677899499
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC-CEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 8788886401321039999989998608700000102233-326886235543114554201124543200002567631
Q gi|254780316|r 234 MRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRIS-DVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQS 312 (805)
Q Consensus 234 l~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~-~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ia 312 (805)
+|+||+++|+||+||+||||||+|+++|||+||||+||+. +.+.||.|+++|+|.+||+++|.|+++++||+|+++|+|
T Consensus 237 l~~rL~~~Gir~in~iVDitNyvmle~GqPlhafD~~~i~~~~i~vr~a~~~e~~~~Ld~~~~~l~~~~lvI~d~~~~ia 316 (795)
T 2rhq_B 237 VQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEETMTTLDNNERKLVDTDIVISNGQEPIA 316 (795)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTCEEEBTTSCEEECCTTCEEEESSSSEEE
T ss_pred HHHHHHHCCCCCCCCCCCCHHHCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCEEEEECCCCCEE
T ss_conf 99999986997501014742102133289641045541247752898436665301115530114553058954997355
Q ss_pred CHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCC
Q ss_conf 0011135531201367269999715787888778876165401554413455301358899988875212334555-652
Q gi|254780316|r 313 IAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTA-SDI 391 (805)
Q Consensus 313 laGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~-~~~ 391 (805)
|||||||.+|+|+++|||||||||+|||..||+|+|+++++||||+|||||+||..+..++.|+++|+.++|||++ ...
T Consensus 317 laGImgg~~s~V~~~T~~iliE~a~fdp~~Ir~tsr~l~l~tdas~Rfergvd~~~~~~a~~~~~~li~~~~~~~~~~~~ 396 (795)
T 2rhq_B 317 LAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVLQDR 396 (795)
T ss_dssp ETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHTCCCGGGHHHHHHHHHHHHHHHSCCEECBCC
T ss_pred ECCEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 35556675556776650344010346889999998874013201111036777410799999999987754266423330
Q ss_pred EEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 58741355431000043113333113458789999999840222103456236640345433440256767676535233
Q gi|254780316|r 392 CIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ 471 (805)
Q Consensus 392 ~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdn 471 (805)
.+.+..+..+++|.++.++++++||++++.+++.++|++|||+++.+++.|.|+||+||+||.+++||||||+|+|||||
T Consensus 397 ~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~~i~~iL~~Lg~~v~~~~~~~~V~vP~~R~DI~~e~DliEEIaRiyGydn 476 (795)
T 2rhq_B 397 VSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEVARIYGYDE 476 (795)
T ss_dssp EEEECCCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEEEETTCTTCCSHHHHHHHHHHHHCTTT
T ss_pred EECCCCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 21144434321465038999765298751366999998558879962870899899854534766537776774437300
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCHHHC
Q ss_conf 46676554434576789988954678988787787740232100482576552000-00000246776432101512211
Q gi|254780316|r 472 IKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGG-QRELEILNPISADMSNMRTSLLP 550 (805)
Q Consensus 472 Ip~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~i~l~NPlS~e~s~lR~SLlp 550 (805)
||++++.... .........+...+++|+.|+++||+|++||||++++....++.. .+.++|+||+|+|+++||+||+|
T Consensus 477 ip~~~p~~~~-~~~~~~~~~~~~~~~lr~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~~v~l~NPls~e~s~lR~SLlp 555 (795)
T 2rhq_B 477 IPSSLPVFGE-VTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLP 555 (795)
T ss_dssp SCCCCCCCSS-CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHH
T ss_pred CCCCCCCHHC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCHH
T ss_conf 7676862000-245678878988999999998649864345224330021110234654332157213425565065326
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC---CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 067764321015861134543024444777544---31000221035431012462023454433331468887531111
Q gi|254780316|r 551 GLLKATGRNVDRAIADFAIFEVSHVYENDTPEG---QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALS 627 (805)
Q Consensus 551 ~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ 627 (805)
|||+++++|++|+++++++||+|+||.++.... +...++++ ..|......|....+.+|||++||.+++
T Consensus 556 ~LL~~~~~N~~r~~~~~~lFEiG~vf~~~~~~~~~~~~~~l~~~--------~~g~~~~~~~~~~~~~~df~~~Kg~ve~ 627 (795)
T 2rhq_B 556 HLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEYLSGI--------LTGEYVVNAWQGKKEEIDFFIAKGVVDR 627 (795)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCCEEEEEEEEE--------EESEEEEEGGGTEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHCCCEEEECCCCCCCCCCHHCEEEE--------EECCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 67888887774589875510064289647764453101204677--------7156340121267656788999889999
Q ss_pred HHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCC
Q ss_conf 11101453330330588656789816999987929999985477899996687997899998787623545202456631
Q gi|254780316|r 628 VIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKV 707 (805)
Q Consensus 628 ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~ 707 (805)
++..++. .+.+.+..+++|||||||.|+++|+.+ |++|+|||.++++|+|+ ++|+|||+|+.|... .....+|
T Consensus 628 ll~~l~~--~~~~~~~~~~~~hpgrsA~I~~~~~~I-G~iGelhP~v~~~~~i~-~v~~~Ei~l~~l~~~---~~~~~~~ 700 (795)
T 2rhq_B 628 VAEKLNL--EFSYKAGKIEGLHPGRTAIVSLEGQDI-GFIGELHPQVAADNDLK-RTYVFELNYDAMMQV---AVGYINY 700 (795)
T ss_dssp HHHHHTC--CCEEEECCCTTEEEEEEEEEEETTEEE-EEEEEECHHHHHHTTCC-SEEEEEEEHHHHTTC---CCCSCCC
T ss_pred HHHHHHH--HCEECCCCCCCCCCCCEEEEEECCEEE-EEEEEECHHHHHHCCCC-CEEEEEEEHHHHHHH---HCCCCCC
T ss_conf 9998433--122213777667888569999999399-99999999999876999-769999997994420---1157777
Q ss_pred CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 3689888720018999668879999999997111-003576989876367799884269999998477988899999999
Q gi|254780316|r 708 VHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRIL 786 (805)
Q Consensus 708 ~~~s~fP~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i 786 (805)
+++|+||+++|||||++|+++++++|+++|++++ ++|+++++||+|+|+++++||||+||||+|||.+|||||+||+++
T Consensus 701 ~~~s~fP~v~RDls~vv~~~v~~~~i~~~i~~~~~~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~ev~~~ 780 (795)
T 2rhq_B 701 EQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKKSVAIRLNYLDTEDTLTDERVSKI 780 (795)
T ss_dssp CCCCSSCCEEEEEECBEETTSCHHHHHHHHHHHCGGGEEEEEEEEEEC-----CCEEEEEEEEEECCSSSCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHH
T ss_conf 97899998657899998998959999999985591517187899997899999996699999999999989799999999
Q ss_pred HHHHHHHHHHHHCCEE
Q ss_conf 9999999999951198
Q gi|254780316|r 787 MDRIVENVVKKTNAVL 802 (805)
Q Consensus 787 ~~~ii~~l~~k~ga~L 802 (805)
+++|++.|+++ ||+|
T Consensus 781 ~~~ii~~l~~~-Ga~l 795 (795)
T 2rhq_B 781 HDKILEALQAE-GATI 795 (795)
T ss_dssp HHHHHHHHHHH-TCBC
T ss_pred HHHHHHHHHHC-CCCC
T ss_conf 99999999975-8899
No 2
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 2iy5_B*
Probab=100.00 E-value=0 Score=1715.81 Aligned_cols=773 Identities=30% Similarity=0.497 Sum_probs=703.1
Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECC-CCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCC
Q ss_conf 97786799884789998899999987458604211124-65687489999997565799870899975999579897548
Q gi|254780316|r 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNR-EALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGA 79 (805)
Q Consensus 1 M~is~~WL~~~v~~~~~~~~l~~~lt~~G~EVe~i~~~-~~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA 79 (805)
||||++||+||+|++.++++|+++||++|+|||+++.. ..+++||||+|++|+||||.+|++|+||+| +.+||||||
T Consensus 1 M~~s~~WL~e~v~~~~~~~~l~~~Lt~~G~EVE~i~~~~~~~~~vvvg~v~~~~~hp~dkL~v~~vd~g--~~~~IVcgA 78 (785)
T 1b7y_B 1 MRVPFSWLKAYVPELESPEVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPGTRLKRLVLDAG--RTVEVVSGA 78 (785)
T ss_dssp CEEEHHHHTTTSTTCCCHHHHHHHHHHHTCCCCEEEECCCCCTTEEEEEEEEEEECTTSSCEEEEEESS--SEEEEEECC
T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEECCC--CEEEEECCC
T ss_conf 957889999865999999999999855506115888546677998999998988779761799997699--778898799
Q ss_pred CCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCC-CCCCCHHHHHCCCCEEEE
Q ss_conf 3455897898966877925898398331205865054541188769985477507816888-888455887088855999
Q gi|254780316|r 80 PNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDA-PVGGRLSDYLELSDPIID 158 (805)
Q Consensus 80 ~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~-~~G~~~~~~l~l~D~i~e 158 (805)
|||++|++||||++||+||+++++||++||||++|+|||||+.||||+++|+|||+||+|+ ++|+++.+++ ++|++||
T Consensus 79 ~Nv~~g~~V~vA~~Ga~lp~~~~~Ik~~kirGv~S~GMlCS~~ELGl~~~~~GI~~L~~~~~~~g~~~~~~~-~~D~iie 157 (785)
T 1b7y_B 79 ENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAW-PEEVVLD 157 (785)
T ss_dssp TTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSEECCHHHHTSCSCCSSCCCBCTTSSCTTCBGGGTS-CCCEEEE
T ss_pred CCCCCCCEEEEECCCCEECCCCCEEEEEEECCCCCCCEECCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHC-CCCEEEE
T ss_conf 722379999997859896699978875130584027045578883999778986990897665767689965-8986999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 87087857665557899987764115666655456677777774158984073111233201123224556637787888
Q gi|254780316|r 159 VSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRL 238 (805)
Q Consensus 159 i~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~wl~~rL 238 (805)
+++||||||||||+|||||+||++...++.+.... .......+.+++++++.||||.+++++||++++||+|||.||
T Consensus 158 i~itpNR~D~ls~~GiARelaa~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~c~~~~~~~i~~v~~~~Sp~w~~~rL 234 (785)
T 1b7y_B 158 LEVTPNRPDALGLLGLARDLHALGYALVEPEAALK---AEALPLPFALKVEDPEGAPHFTLGYAFGLRVAPSPLWMQRAL 234 (785)
T ss_dssp CCCCTTCGGGGSHHHHHHHHHHTTCCCCCCCCCCC---EECCCCSSEEEESCTTTCSEEEEEEEESCCCCCCCHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 86389835633189999999874066667611145---566787326883175458803147980554779839999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEE----CCCCCCCCH
Q ss_conf 8640132103999998999860870000010223332688623554311455420112454320000----256763100
Q gi|254780316|r 239 KAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIA----SDGRIQSIA 314 (805)
Q Consensus 239 ~~~Gir~inniVDitNyvmle~GqPlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~----d~~~~iala 314 (805)
.++|+|||||+||||||||+|+|||+||||+||+.+.+.||.|++||+|++||+++|.|+++++||+ |+++|+|||
T Consensus 235 ~~~Gir~in~iVDitNyvmle~GqPlHafD~~k~~~~i~vr~a~~gE~~~~Ld~~e~~l~~~~lvI~~~~~d~~~~lala 314 (785)
T 1b7y_B 235 FAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDLVIAGWRGEESFPLGLA 314 (785)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTTCEEEBTTSCEEECCTTCEEEEEEETTEEEEEEET
T ss_pred HHCCCCCHHHCCCHHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEE
T ss_conf 97489751101464664254239874140100366532442048997777337752113554147631324566647673
Q ss_pred HHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 11135531201367269999715787888778876165401554413455301358899988875212334555652587
Q gi|254780316|r 315 GIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIA 394 (805)
Q Consensus 315 GImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~ 394 (805)
|||||.+|+|+++|++||||||+|||.+||+|+|+|+++||||||||||+||..+..|+.|+++|+.++|||++.+...+
T Consensus 315 GImgg~~s~V~~~T~~IllE~A~fdp~~Ir~t~r~l~l~tdas~Rfergvd~~~~~~a~~ra~~li~~~~~g~~~~~~~~ 394 (785)
T 1b7y_B 315 GVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAGARVAEALLE 394 (785)
T ss_dssp TTEEBTTTBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHHCCCTTCHHHHHHHHHHHHHHHSCCEEESCCEE
T ss_pred EEECCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 78467540210476259997224796999999998477545665322354122237888777653210245543211454
Q ss_pred EECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 41355431000043113333113458789999999840222103456236640345433440256767676535233466
Q gi|254780316|r 395 RNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKS 474 (805)
Q Consensus 395 ~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~ 474 (805)
...+..++.|.++.++++++||++++.++|.++|++|||+++.+++.|.|+||+||+||.+++||||||||+|||||||+
T Consensus 395 ~~~~~~~~~I~l~~~~i~~~lG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DliEEIaRiyGYdnIp~ 474 (785)
T 1b7y_B 395 AGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIPL 474 (785)
T ss_dssp ECCCCCCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEESSSSSEEEECCTTCCSCCSHHHHHHHHHHHHCGGGSCC
T ss_pred ECCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCCCHHHHHHEEECCCCCCC
T ss_conf 10345640000007887641252001046899998479969858952899889840003788646764560007254656
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHH
Q ss_conf 76554434576789988954678988787787740232100482576552000000002467764321015122110677
Q gi|254780316|r 475 EPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLK 554 (805)
Q Consensus 475 ~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~ 554 (805)
+++...........+..+++.+++|+.|+++||+|++||||+|++++..+....+.+.|.||+|+|+++||+||+||||+
T Consensus 475 ~~p~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~v~l~NPls~e~~~lR~sLlp~LL~ 554 (785)
T 1b7y_B 475 ALPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVR 554 (785)
T ss_dssp CCCCCCCCGGGSSTTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCCCHHHH
T ss_conf 67653445556675553799999999998689856404776787896553025522475157750014463116306999
Q ss_pred HHHHHCCCCCC-HHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 64321015861-13454302444477754431000221035431012462023454433331468887531111111014
Q gi|254780316|r 555 ATGRNVDRAIA-DFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFV 633 (805)
Q Consensus 555 ~~~~N~~r~~~-~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~ 633 (805)
++++|++|+++ .+++||+|+||.+.... .. .+...+. . ...|.......|||++||.+++++..++
T Consensus 555 ~~~~N~~~~~~~~~~lFEiG~vf~~~~~~---~~-~~~~~~~--------~-~~~~~~~~~~~df~~~Kg~ve~l~~~l~ 621 (785)
T 1b7y_B 555 VLKENLDLDRPERALLFEVGRVFREREET---HL-AGLLFGE--------G-VGLPWAKERLSGYFLLKGYLEALFARLG 621 (785)
T ss_dssp HHHHHHHHSCCSCEEEEEEEEEESSSEEE---EE-EEEEESS--------C-BSCSSSSCCBCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCEEECCCCEECCCCHH---HH-HHHHCCC--------C-CCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99988760787543153025342442033---34-3532034--------4-4433332344326678999999987527
Q ss_pred CCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 53330330588656789816999987929999985477899996687997899998787623545202456631368988
Q gi|254780316|r 634 SLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSL 713 (805)
Q Consensus 634 ~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~f 713 (805)
. .++++...+++|||||||.|+++|+.+ |++|+|||.++++|+|+ ++++|||+|+.+ .+..+|+++|+|
T Consensus 622 ~--~~~~~~~~~~~~hpgrsa~I~~~~~~i-G~iGelhP~v~~~~~i~-~v~~~Ei~l~~~-------~~~~~~~~~skf 690 (785)
T 1b7y_B 622 L--AFRVEAQAFPFLHPGVSGRVLVEGEEV-GFLGALHPEIAQELELP-PVHLFELRLPLP-------DKPLAFQDPSRH 690 (785)
T ss_dssp C--CCEEECCCCTTEEEEEEEEEEETTEEE-EEEEEECHHHHHHTTCC-CCEEEEEEESCC-------CCCCCCCCCCCS
T ss_pred C--CCEEECCCCCCCCCCCEEEEEECCEEE-EEEEEECHHHHHHCCCC-CEEEEEEECCCC-------CCCCCCCCCCCC
T ss_conf 5--421422668777887579999999799-99999988999876999-779999804362-------347657989989
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8720018999668879999999997111-003576989876367799884269999998477988899999999999999
Q gi|254780316|r 714 HPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVE 792 (805)
Q Consensus 714 P~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~ 792 (805)
|+++|||||++|+++++++|+++|++++ ++|+++++||+|+|+++++||||+||||+|||.+|||||+||++++++|++
T Consensus 691 P~v~RDls~vv~~~v~~~~i~~~I~~~~~~ll~~v~lfDvY~g~~i~~gkkS~a~~l~fqs~~kTL~d~eI~~~~~kii~ 770 (785)
T 1b7y_B 691 PAAFRDLAVVVPAPTPYGEVEALVREAAGPYLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRTLRDEEVEEAVSRVAE 770 (785)
T ss_dssp CCEEEEECCCEESSSCHHHHHHHHHHHHCTTEEEEEEEECCCCTTSCTTEECCEEEEEECCSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 98427799998998959999999986390508187799997899989996699999999999999799999999999999
Q ss_pred HHHHHHCCEECC
Q ss_conf 999995119816
Q gi|254780316|r 793 NVVKKTNAVLRS 804 (805)
Q Consensus 793 ~l~~k~ga~LRs 804 (805)
.|+++ ||+||.
T Consensus 771 ~L~~~-ga~LRG 781 (785)
T 1b7y_B 771 ALRAR-GFGLRG 781 (785)
T ss_dssp HHHCC-------
T ss_pred HHHHC-CCEECC
T ss_conf 99976-979778
No 3
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=0 Score=923.92 Aligned_cols=533 Identities=17% Similarity=0.176 Sum_probs=431.8
Q ss_pred HHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHH-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2058650545411887699854775078168888884558870-888559998708785766555789998776411566
Q gi|254780316|r 108 KIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYL-ELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKL 186 (805)
Q Consensus 108 ~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l-~l~D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l 186 (805)
+-++.+|.||+|| |+|+ +.+||...++..+.+......+ ..||+||||++||||||||||+||||||||+++. +
T Consensus 17 ~~~~~e~~~~lc~--~~gl--e~d~~~~~~~~~~~~~~~~~~~~~~dd~i~eieiTpNR~D~lS~~GiARelaa~~~~-~ 91 (589)
T 3l4g_B 17 RTYTDEEFDELCF--EFGL--ELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKER-I 91 (589)
T ss_dssp SCCCTTHHHHHHH--HTTC--EEEEEEEHHHHHTTTSSCCCCCSSSSSEEEEEECCTTCSTTSSHHHHHHHHHHHTTS-S
T ss_pred CCCCHHHHHHHHH--HCCC--CCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 9898789997787--6398--035654531102344452000256888589996088757886899999999984488-7
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCC----CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6655456677777774158984073111233201123224556----637787888864013210399999899986087
Q gi|254780316|r 187 KEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNV----APNWMRQRLKAVGLRSISALVDITNYVSLDRGY 262 (805)
Q Consensus 187 ~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~----SP~wl~~rL~~~Gir~inniVDitNyvmle~Gq 262 (805)
+.|.+...... .....+.+.+++.+.||+|.+++|+||++++ ||.|||+||+++|+|+ ||+||||||+|+++||
T Consensus 92 ~~p~~~~~~~~-~~~~~~~v~~~~~~~cp~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~g~r~-~~~VdItnyv~~~~gq 169 (589)
T 3l4g_B 92 KAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRK-RALVAIGTHDLDTLSG 169 (589)
T ss_dssp CCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTT-TTSEEEEEEEGGGCCS
T ss_pred CCCCCCCCCCC-CCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC-CCEEEEHHEEHHHCCC
T ss_conf 78765555777-765443552256454975899999753137200059999999999827985-5367321146865389
Q ss_pred CEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCE--------------EEECCCC-CCCCHHHCCCCCCCCCCC
Q ss_conf 0000010223332688623554311455420112454320--------------0002567-631001113553120136
Q gi|254780316|r 263 PSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNV--------------VIASDGR-IQSIAGIIGGKHAGCDDN 327 (805)
Q Consensus 263 PlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~l--------------vI~d~~~-~ialaGImGg~~s~v~~~ 327 (805)
|+|+|+.++ +.+.++.+..+|++.++|+.++.++.+++ ||+|+++ ++++||||||.+|+|+++
T Consensus 170 Plhy~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~vi~d~~~~vl~lagiigg~~s~v~~~ 247 (589)
T 3l4g_B 170 PFTYTAKRP--SDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVN 247 (589)
T ss_dssp CEEEEEECS--TTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEEBSTTCCCTT
T ss_pred CEEEEEECC--CCEEEEECCCCCEEEECCCEEEEECCCCHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEECCC
T ss_conf 879999779--974899878872476034406760463244311211036750489888967898564336766166565
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC---------CCEEEEECC
Q ss_conf 72699997157878887788761654015544134553013588999888752123345556---------525874135
Q gi|254780316|r 328 TTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTAS---------DICIARNIT 398 (805)
Q Consensus 328 T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~---------~~~~~~~~~ 398 (805)
|++|++|+|+|||..++++ +.+++.++.++|++... .....+...
T Consensus 248 T~~i~iE~a~~d~~~~~~~--------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (589)
T 3l4g_B 248 TRNIFIECTGTDFTKAKIV--------------------------LDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPE 301 (589)
T ss_dssp CCCEEEEEEESCHHHHHHH--------------------------HHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECC
T ss_pred CHHEEEHHCCCHHHHHHHH--------------------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 3010112014207889998--------------------------87899999986353433110368862122245776
Q ss_pred CCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 543100004311333311345878999999984022210--345623664034543344025676767653523346676
Q gi|254780316|r 399 YKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIG--EYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEP 476 (805)
Q Consensus 399 ~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~--~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~ 476 (805)
.++++|.++.++++++||++++.++|.++|++|||+++. +++.|.|+||+||+||.+++||||||+|+|||||||+.+
T Consensus 302 ~~~~~i~~~~~~i~~~lG~~i~~~~i~~iL~~Lgf~~~~~~~~~~~~v~vPs~R~DI~~~~DliEEIaRiyGydnI~~~~ 381 (589)
T 3l4g_B 302 LAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTL 381 (589)
T ss_dssp CCCEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEECSSSSEEEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCC
T ss_pred CCCCEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 66420324899952303872386788999987488058604687576248875564587541788888670030266667
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHHHCCCCCCCCCCCCCCCCHHHCHH
Q ss_conf 55443457678998895467898878778774023210048257655200----00000024677643210151221106
Q gi|254780316|r 477 LPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG----GQRELEILNPISADMSNMRTSLLPGL 552 (805)
Q Consensus 477 l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~----~~~~i~l~NPlS~e~s~lR~SLlp~L 552 (805)
+.. ......+..+++.+++|+.|+++||+|++||||+|++++..+.. ..+.++|.||+|+|+++||+||+|||
T Consensus 382 p~~---~~~~~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~sLlp~L 458 (589)
T 3l4g_B 382 PKT---YTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGL 458 (589)
T ss_dssp CCC---CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHH
T ss_pred CCC---CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCHHHH
T ss_conf 764---45565785799999999999971212202002569899987635566656428960875344444202576889
Q ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 77643210158611345430244447775443100022103543101246202345443333146888753111111101
Q gi|254780316|r 553 LKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF 632 (805)
Q Consensus 553 L~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l 632 (805)
|+++++|++|+. ++++||+|+||.++...... ......++ + .|. ....|||++||.+++++..+
T Consensus 459 L~~~~~N~~~~~-~~~lFEiG~Vf~~~~~~~~~----~~~~~~l~----~-----~~~--~~~~~f~~~kg~~e~ll~~l 522 (589)
T 3l4g_B 459 LKTIAANRKMPL-PLKLFEISDIVIKDSNTDVG----AKNYRHLC----A-----VYY--NKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp HHHHHHTTTSCS-CEEEEEEEEEEEECTTSTTS----EEEEEEEE----E-----EEE--SSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCC-CEEEEEECCEECCCCCCCCC----CCCCCEEE----E-----EEC--CCCCCHHHHHHHHHHHHHHC
T ss_conf 999997316799-76799731447268864345----30114788----9-----970--89999999999999999872
Q ss_pred CCC-----CCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHH
Q ss_conf 453-----330330588656789816999987929999985477899996687997899998787623
Q gi|254780316|r 633 VSL-----DSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIP 695 (805)
Q Consensus 633 ~~~-----~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~ 695 (805)
+.. ..+.+++.++++|||||||.|+++|+.+ |++|+|||.++++|+|+.|||+|||||+.|.
T Consensus 523 ~i~~~~~~~~~~~~~~~~~~~hPgrsA~I~~~g~~i-G~iGelhP~v~~~~~l~~~v~~~Eidl~~Ll 589 (589)
T 3l4g_B 523 DVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSV-GKLGVLHPDVITKFELTMPCSSLEINIGPFL 589 (589)
T ss_dssp TCCBSTTTTSEEEEECCCTTEEEEEEEEEEETTEEE-EEEEEECHHHHHHTTCCSCEEEEEEECGGGC
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEE-EEEEEECHHHHHHCCCCCCEEEEEEEHHHHC
T ss_conf 997445666379964878876898769999999499-9999998999997297997699999936829
No 4
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=0 Score=529.69 Aligned_cols=317 Identities=18% Similarity=0.239 Sum_probs=273.5
Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCC
Q ss_conf 97786799884789998899999987458604211124656874899999975657998708999759995798975483
Q gi|254780316|r 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAP 80 (805)
Q Consensus 1 M~is~~WL~~~v~~~~~~~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~ 80 (805)
|.++++||.+++..+.+.+++++.|+++|+|||++.. +
T Consensus 4 i~~~~~~L~~~lg~~~~~e~~~~~l~~~G~ev~~~~~---------------------------------~--------- 41 (348)
T 2cxi_A 4 FDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWE---------------------------------E--------- 41 (348)
T ss_dssp EEEEHHHHHHHHTSCCCHHHHHHHHHHTTEEEEEEEE---------------------------------E---------
T ss_pred EEECHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC---------------------------------C---------
T ss_conf 9973999999878999989999877876971135557---------------------------------7---------
Q ss_pred CCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 45589789896687792589839833120586505454118876998547750781688888845588708885599987
Q gi|254780316|r 81 NVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVS 160 (805)
Q Consensus 81 Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~l~D~i~ei~ 160 (805)
. +|.++|++
T Consensus 42 -------------------~----------------------------------------------------~~~~~eid 50 (348)
T 2cxi_A 42 -------------------N----------------------------------------------------GKVYFKLD 50 (348)
T ss_dssp -------------------T----------------------------------------------------TEEEEEEE
T ss_pred -------------------C----------------------------------------------------CEEEEEEC
T ss_conf -------------------7----------------------------------------------------71899847
Q ss_pred EC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 08-78576655578999877641156666554566777777741589840731112332011232245566377878888
Q gi|254780316|r 161 LT-PNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLK 239 (805)
Q Consensus 161 iT-pNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~wl~~rL~ 239 (805)
+| ||||||||++|+||||||+++.+++.|.+..+.. ...+.|..+.++.||+|++++++||++
T Consensus 51 ~t~pNR~D~lS~~GiARel~a~~~~~~~~p~~~~~~~----~~~i~v~~~~~~~~p~~~~~vi~~v~~------------ 114 (348)
T 2cxi_A 51 SKDTNRPDLWSAEGVARQIKWALGIEKGLPKYEVKKS----NVTVYVDEKLKDIRPYGVYAIVEGLRL------------ 114 (348)
T ss_dssp ECCTTCGGGSSHHHHHHHHHHHTTSSCSSCCCCEEEE----EEEEEECGGGTTTSCEEEEEEEESCCC------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCEEEEEECCCCCCCEEEEEEEECCCC------------
T ss_conf 9999828886899999999997688878987334788----842899505777651699999999879------------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHCC-----CEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCE------------
Q ss_conf 64013210399999899986087-----0000010223332688623554311455420112454320------------
Q gi|254780316|r 240 AVGLRSISALVDITNYVSLDRGY-----PSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNV------------ 302 (805)
Q Consensus 240 ~~Gir~inniVDitNyvmle~Gq-----PlHafD~dki~~~i~vr~a~~~E~~~~Ld~~e~~L~~~~l------------ 302 (805)
|.+|+|++||+|||+|+++|| |+||||+|||+++|.||.|+++|+|++||++++.+..+++
T Consensus 115 --~~~~i~~ivdi~n~v~~~~Gq~r~~~pih~fDldkI~~~i~vr~a~~~e~f~~Ld~~~~~~~~e~l~~~~~~~~~~~~ 192 (348)
T 2cxi_A 115 --DEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAEKTEKFAPLGYKEEMTLEEILEKHEKGREYGHL 192 (348)
T ss_dssp --CHHHHHHHHHHHHHHHHTTTTTTTSEEEEEEEGGGSCSSEEEEEECTTCEECBTTCSSCEEHHHHHHHSHHHHHHGGG
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCCEEEECCCCHHCCCHHHHHHCCCCCEEEEE
T ss_conf --847899999999999999755540386201757676884699954999868879963313735542204566502344
Q ss_pred --------EEECC-CCCCCCHHHCCCCCC-CCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf --------00025-676310011135531-20136726999971578788877887616540155441345530135889
Q gi|254780316|r 303 --------VIASD-GRIQSIAGIIGGKHA-GCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPV 372 (805)
Q Consensus 303 --------vI~d~-~~~ialaGImGg~~s-~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~a 372 (805)
||+|. .+++++||||||..| +++.+|+++|+|+|.|||..++ +++++.+++|||||.++..+.
T Consensus 193 i~~~~~~~vi~d~~~~ils~~~ii~~~~s~ki~~~T~~i~~e~~~~d~~~~~-----~~l~~~~~~l~e~g~~~~~~~-- 265 (348)
T 2cxi_A 193 IKDKQFYPLLIDSEGNVLSMPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVM-----LALNVMVTALAERGGKIRSVR-- 265 (348)
T ss_dssp TTTSSSEEEEEETTSCEEEETTTEEBSSSSCCCTTCCSEEEEEEESCHHHHH-----HHHHHHHHHHHTTTCEEEEEE--
T ss_pred ECCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHEEEEEECCCHHHHH-----HHHHHHHHHHHHHCCCCEEEE--
T ss_conf 2157775389818984699545426000265675531148986148989999-----999999999998479840489--
Q ss_pred HHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99888752123345556525874135543100004311333311345878999999984022210345623664034543
Q gi|254780316|r 373 LKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQD 452 (805)
Q Consensus 373 l~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~D 452 (805)
+ +........+..++++|+++.++++++||++++.++|.++|++|||+++.+++.|.|+||+||+|
T Consensus 266 ----------v----~~~~~~~~~p~~~~~~i~~~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~V~vP~~R~D 331 (348)
T 2cxi_A 266 ----------V----VYKDFEIETPDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEISRGRAKLKYPAFRDD 331 (348)
T ss_dssp ----------E----ECSSCEEEECCCCCEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEEECTTCCC
T ss_pred ----------E----EECCCEECCCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCCCCC
T ss_conf ----------9----94574120467776479967999988868867999999999987997996598289989998566
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 34402567676765352
Q gi|254780316|r 453 VEEKADLVEEILRIYGV 469 (805)
Q Consensus 453 I~~e~DLiEEIaRiyGY 469 (805)
|.+++||||||||+|||
T Consensus 332 I~~~~DliEEIaRiyGY 348 (348)
T 2cxi_A 332 IMHARDILEDVLIAYGY 348 (348)
T ss_dssp CCSHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHCCC
T ss_conf 69733899987875288
No 5
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=100.00 E-value=0 Score=476.81 Aligned_cols=405 Identities=13% Similarity=0.104 Sum_probs=311.4
Q ss_pred HHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHC----CCCCHH
Q ss_conf 8761654015544134553013588999888752123345556525874135543100004311333311----345878
Q gi|254780316|r 347 GKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSG----IDVPIE 422 (805)
Q Consensus 347 ar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG----~~i~~~ 422 (805)
-..+||+||||+|||||+|++++..+++||..+..+++++..... +..+.+...| +....+
T Consensus 8 ~~s~GL~td~ShrFer~~~~ela~ka~ErA~~~~~eil~~~~id~---------------~lPr~~~~~Gk~HPl~~~ie 72 (665)
T 2odr_A 8 HHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINE---------------SYPRIKPVFGKTHPVNDTIE 72 (665)
T ss_dssp ---------------CHHHHHHHHHCHHHHHHHHGGGSCCCCTTT---------------SGGGSCCCCCBCCHHHHHHH
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------------CCCCCCCCCCCCCHHHHHHH
T ss_conf 435787860553100113367669999999996455506775554---------------58998878766082899999
Q ss_pred HHHHHHHHHHHHHHCCC---CCCEE---EECCCCC---C-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999998402221034---56236---6403454---3-3440256767676535233466765544345767899889
Q gi|254780316|r 423 DSLRILERLGFSVIGEY---DKFEV---SVPSWRQ---D-VEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQ 492 (805)
Q Consensus 423 ei~~iL~~Lgf~v~~~~---~~~~V---~vPs~R~---D-I~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~ 492 (805)
+|.++|.+|||++.... +.|.+ .+|+||+ | +..+.|++|||+|+|||||||+..+.... ........+
T Consensus 73 eIreIL~rLGFee~~gp~Ie~~wnfD~LfvP~~HPaRDDtFyLE~DliEEVaRiyGYdnIp~tlp~~~~--~~~e~~~~~ 150 (665)
T 2odr_A 73 NLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVS--EHKESLQKI 150 (665)
T ss_dssp HHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------------
T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCCCCCCCCCHHCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCC--CCCCHHHHH
T ss_conf 999999988988963894745250443268987752117154247632233022452334322444544--531013567
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 54678988787787740232100482576552000000002467764321015122110677643210158611345430
Q gi|254780316|r 493 SRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEV 572 (805)
Q Consensus 493 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEi 572 (805)
...+++++.|.+.||+|++||||++++....+.....++.+.||+++++++||||++|||+.++++|++|+..++++||+
T Consensus 151 ~~~~k~r~~l~~~G~~EVitySfvs~~~~~~l~~~~~~i~l~NPisSe~svLRThlspgll~~l~~N~~r~~~plrlFEi 230 (665)
T 2odr_A 151 LHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSI 230 (665)
T ss_dssp ---------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 66665312221046124542022362443202565552002585531355648887268999999998579998589977
Q ss_pred CCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCC
Q ss_conf 244447775443100022103543101246202345443333146888753111111101453-3303305886567898
Q gi|254780316|r 573 SHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPG 651 (805)
Q Consensus 573 G~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPg 651 (805)
|+||.++....+.+.....+. .|-. -.+.+||||+||.+++++..++.. ..+++.+...+++|||
T Consensus 231 GrVFR~D~~~D~tHl~~fhQl-------eGlv-------vg~~vdf~DLKg~le~lL~~lg~~~vkfr~~~s~~Pf~hPg 296 (665)
T 2odr_A 231 DRCFRREQKEDKSHLMTYHSA-------SCAI-------AGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPE 296 (665)
T ss_dssp EEEECCCSCCCSSCCSEEEEE-------EEEE-------ECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTT
T ss_pred EEEECCCCCCCCCCCCEEEEE-------EEEE-------ECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 788747875546558611489-------9999-------86756789999999999999678871899657778998994
Q ss_pred CEEEEEECC----EE-EEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEEEE
Q ss_conf 169999879----29-999985477899996687997899998787623545202456--63136898887200189996
Q gi|254780316|r 652 RSGIIKTSA----EI-VLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKT--KKVVHLSSLHPVKRDLAFIV 724 (805)
Q Consensus 652 rsa~I~~~g----k~-iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~--~~~~~~s~fP~v~RDls~iv 724 (805)
++++|++.+ +. -+|.+|++||.+++++||+.++++|++.+|.|.......... ..+.++++||.+.||+|++|
T Consensus 297 ~eaeV~~~~~k~~~WlEIgg~G~vhP~VLk~~GId~~V~AFGLGLERLAMlk~gI~DIR~L~~p~f~~~~~s~RDlA~~V 376 (665)
T 2odr_A 297 TQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVASMV 376 (665)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCGGGSCCCCCHHHHHTTE
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHEE
T ss_conf 05899999456983999992443079999876979857999975899999873997688761666578984331221121
Q ss_pred --CCCCCHHHHHHHHHHC-CCCEEEEE-----EEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHH
Q ss_conf --6887999999999711-10035769-----8987636779988426999999847798889999
Q gi|254780316|r 725 --DQHIPAGTLVNIIKNV-DRLIDDVT-----VFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDD 782 (805)
Q Consensus 725 --~~~v~~~~I~~~i~~~-~~ll~~v~-----lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~E 782 (805)
+++..++++.+.+++. ....+++. .||+|+|++++++|||+++++++++.++||-..-
T Consensus 377 ~ldk~p~~~e~~~i~~~i~~~~~~~~~~~sp~~FdvyeG~~~g~~KKsIavsv~~~eenk~L~g~~ 442 (665)
T 2odr_A 377 KLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPS 442 (665)
T ss_dssp EESCCCSSHHHHHHHHHHHHHHHHC----------------------------------------C
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCEEEEEEEEEECCCCCCCCHH
T ss_conf 114674607799999999999986487678736999755577998528999999536897426814
No 6
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=100.00 E-value=0 Score=471.89 Aligned_cols=410 Identities=12% Similarity=0.094 Sum_probs=309.4
Q ss_pred HHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHH
Q ss_conf 87616540155441345530135889998887521233455565258741355431000043113333113458789999
Q gi|254780316|r 347 GKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLR 426 (805)
Q Consensus 347 ar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~ 426 (805)
-..+||+||||+|||||+|++++..+++||..+..+++++...... + | ......-+...+++. .++|.+
T Consensus 8 ~~s~GL~~~~ShrFer~~~~Ela~ka~ErAw~~~~~il~~~~id~~--~--P-r~~~~~Gk~HPI~~~------IeeIre 76 (685)
T 2odr_D 8 HHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINES--Y--P-RIKPVFGKTHPVNDT------IENLRQ 76 (685)
T ss_dssp ---------------CHHHHHHHHHCHHHHHHHHGGGSCCCCGGGS--T--T-TCCCCCCBCCHHHHH------HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--C--C-CCCCCCCCCCHHHHH------HHHHHH
T ss_conf 4357878605641113355777799999999975555067766645--8--9-988887660758999------999999
Q ss_pred HHHHHHHHHHCCC---CCCEE---EECCCC---CC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9998402221034---56236---640345---43-34402567676765352334667655443457678998895467
Q gi|254780316|r 427 ILERLGFSVIGEY---DKFEV---SVPSWR---QD-VEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTR 496 (805)
Q Consensus 427 iL~~Lgf~v~~~~---~~~~V---~vPs~R---~D-I~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~ 496 (805)
+|.+|||++.... +.|.+ .+|+|| .| +..+.|++|||+|+|||||||+..+.... ........+...+
T Consensus 77 IL~sLGFeE~~~p~Ive~wnfD~LfvP~~HPaRDDtFyLE~DliEEVaRiyGYdnIp~tlp~~~~--~~~e~~e~~~~~~ 154 (685)
T 2odr_D 77 AYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVS--EHKESLQKILHGY 154 (685)
T ss_dssp HHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------------------
T ss_pred HHHHCCCEEEECCEEEEEEECCCCCCCCCCCHHHCCEEECCCCCCHHCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHH
T ss_conf 99987988975894722040531158998725318262057651022133453233100355555--6213356666676
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCC
Q ss_conf 89887877877402321004825765520000000024677643210151221106776432101586113454302444
Q gi|254780316|r 497 YVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVY 576 (805)
Q Consensus 497 ~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf 576 (805)
++++.+.+.||+|++||||++++....+.+...++.+.||+|+++++||||++|||+.++++|++|+.+++++||+|+||
T Consensus 155 k~r~il~~~G~~EvitySFvs~~~~~~l~~~~~~i~L~NPisse~svLRThtspgll~~l~~n~~r~~~piRlFEiGrVF 234 (685)
T 2odr_D 155 KKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCF 234 (685)
T ss_dssp -----------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEE
T ss_pred HHCCHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 40310102451024421134734543215665620025855202557588774679999999984799984899646777
Q ss_pred CCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEE
Q ss_conf 47775443100022103543101246202345443333146888753111111101453-33033058865678981699
Q gi|254780316|r 577 ENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGI 655 (805)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~ 655 (805)
.++......+.....+. .|. -....+||||+||.+++++..++.. ..+++.+...+++|||++++
T Consensus 235 R~D~i~DatHl~efhQl-------eGl-------ivg~~Vdf~DLKgiLE~lL~~Lg~~~vkfr~~~s~~Pf~hPg~eae 300 (685)
T 2odr_D 235 RREQKEDKSHLMTYHSA-------SCA-------IAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTE 300 (685)
T ss_dssp CCCSCCCSSCCSEEEEE-------EEE-------EECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEE
T ss_pred ECCCCCCCCCCCCEEEE-------EEE-------EEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE
T ss_conf 05775445457631458-------999-------9967747999999999999986788739996667788879950279
Q ss_pred EEEC----CEEE-EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEEEE--CC
Q ss_conf 9987----9299-99985477899996687997899998787623545202456--63136898887200189996--68
Q gi|254780316|r 656 IKTS----AEIV-LGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKT--KKVVHLSSLHPVKRDLAFIV--DQ 726 (805)
Q Consensus 656 I~~~----gk~i-iG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~--~~~~~~s~fP~v~RDls~iv--~~ 726 (805)
|++. ++.+ +|.+|++||.+++++||+.++|+|+|.+|.|.......... ..+..++.|+.+.||+|++| |+
T Consensus 301 V~~~~~~~~~WlEIgg~G~vhP~VLk~~GId~~V~AFGLGLERLAMlk~gI~DIR~L~~p~fy~~~~SdRDlA~~V~~dk 380 (685)
T 2odr_D 301 VYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVASMVKLDK 380 (685)
T ss_dssp EEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCGGGSCCCCCHHHHHHHEECSS
T ss_pred EEEECCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHEECCCC
T ss_conf 99980679838999806650799998769798579999778999998739973776515676889876666532026577
Q ss_pred CCCHHHHHHHHHHC-CCCEE-----EEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHH
Q ss_conf 87999999999711-10035-----76989876367799884269999998477988899999
Q gi|254780316|r 727 HIPAGTLVNIIKNV-DRLID-----DVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDI 783 (805)
Q Consensus 727 ~v~~~~I~~~i~~~-~~ll~-----~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI 783 (805)
+..++++.+.+++. ..+++ ++..||+|+|++++++|||+++++++|+.++||.+..+
T Consensus 381 ~p~~~e~~~i~~~i~~~~~k~~d~~s~~~FdvyeG~~~g~~kKsIav~v~~~eenktL~gp~~ 443 (685)
T 2odr_D 381 VPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSI 443 (685)
T ss_dssp CC-------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCEEEEEEEEEECCCCCCCCHHH
T ss_conf 745089999999999999970887787279997241578885189999998569984469478
No 7
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=100.00 E-value=0 Score=459.51 Aligned_cols=407 Identities=13% Similarity=0.094 Sum_probs=299.4
Q ss_pred HHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHH
Q ss_conf 87616540155441345530135889998887521233455565258741355431000043113333113458789999
Q gi|254780316|r 347 GKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLR 426 (805)
Q Consensus 347 ar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~ 426 (805)
-..+||+||||+|||||+|++++..+++||..+..+++++...... + |. .+...-+...+++. .+++.+
T Consensus 8 ~~S~GL~tdaShrFERgvd~eLa~ka~ErAw~~~~eiv~~~~iD~~--~--Pr-~~~~~Gk~HPl~~~------ieeIre 76 (701)
T 2odr_C 8 HHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINES--Y--PR-IKPVFGKTHPVNDT------IENLRQ 76 (701)
T ss_dssp ---------------CHHHHHHHHHCHHHHHHHHGGGSCCCCTTTS--S--TT-CCCCCCBCCHHHHH------HHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--C--CC-CCCCCCCCCHHHHH------HHHHHH
T ss_conf 4357878506650001143777899999999850010265745545--9--99-88777770717999------999999
Q ss_pred HHHHHHHHHHCCC---CCCEEE---ECCCC---CC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9998402221034---562366---40345---43-34402567676765352334667655443457678998895467
Q gi|254780316|r 427 ILERLGFSVIGEY---DKFEVS---VPSWR---QD-VEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTR 496 (805)
Q Consensus 427 iL~~Lgf~v~~~~---~~~~V~---vPs~R---~D-I~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~~~~~ 496 (805)
+|.+|||++.... +.|.+. +|+|| .| +..+.|++|||+|+|||||||+..+.... . .......+...+
T Consensus 77 IL~rLGFeE~~gp~Iv~ewnFD~LfvP~~HPaRDDtFyLE~DliEEVaRi~GYdnIp~~~p~~~~-~-~~e~~e~~~~~~ 154 (701)
T 2odr_C 77 AYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVS-E-HKESLQKILHGY 154 (701)
T ss_dssp HHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC------------------------------------
T ss_pred HHHHCCCEEEECCEEEEEECCCCCCCCCCCCHHHCCEEECCCCHHHHCCCCCCCCCCCCCCCCCC-C-CCHHHHHHHHHH
T ss_conf 99978988974896845451641168987743207154347641132023452233212455554-4-200135666766
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCC
Q ss_conf 89887877877402321004825765520000000024677643210151221106776432101586113454302444
Q gi|254780316|r 497 YVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVY 576 (805)
Q Consensus 497 ~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf 576 (805)
++++.+.+.||+|++||||++++....+.....++.+.||+|+++++||||++|||+.++++|++|+.+++|+||+|+||
T Consensus 155 k~r~~l~~~G~~EvitySfvd~~~~~~~~~~~~p~~l~NPisse~sVLRThttpGlL~~l~~n~~r~~~piRlFeiGrVF 234 (701)
T 2odr_C 155 KKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCF 234 (701)
T ss_dssp -----------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 53011210341024320234723320025655620025855301456176874669999999985799984999876667
Q ss_pred CCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCEEE
Q ss_conf 477754431000221035431012462023454433331468887531111111014533-3033058865678981699
Q gi|254780316|r 577 ENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLD-SLRFESGAPSWYHPGRSGI 655 (805)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~-~~~~~~~~~~~~hPgrsa~ 655 (805)
.++......+.....+. .| | -..+.+||||+||.+++++..++... .+++.+..++++|||++++
T Consensus 235 R~D~i~DatHl~~FhQ~-------EG------l-vvg~~Vdf~DLKgiLe~lL~~Lg~~~vkfr~~~s~~Pf~hPg~eae 300 (701)
T 2odr_C 235 RREQKEDKSHLMTYHSA-------SC------A-IAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTE 300 (701)
T ss_dssp CCCSCCCSSCCSEEEEE-------EE------E-EECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEE
T ss_pred ECCCCCCCCCCCEEEEE-------EE------E-EECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE
T ss_conf 25762425578424678-------99------9-9858868999999999999996787729996577889989913589
Q ss_pred EEEC----CEEE-EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCC--CCCCCCCCCCCEEEEEEEE--CC
Q ss_conf 9987----9299-999854778999966879978999987876235452024566--3136898887200189996--68
Q gi|254780316|r 656 IKTS----AEIV-LGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTK--KVVHLSSLHPVKRDLAFIV--DQ 726 (805)
Q Consensus 656 I~~~----gk~i-iG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~--~~~~~s~fP~v~RDls~iv--~~ 726 (805)
|++. ++.+ +|.+|++||.+++++||+.++++|++.+|.|........... .+..+..++.+.||+|+.+ ++
T Consensus 301 V~~~~~~~~~WlEIgg~GmvhP~VL~~~GId~~V~AfGLGLERLAMlkygI~DIR~L~~P~f~~~~ls~rd~A~~v~vdk 380 (701)
T 2odr_C 301 VYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVASMVKLDK 380 (701)
T ss_dssp EEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCGGGSCCCCCHHHHHHHBCCSS
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHEEEECC
T ss_conf 99994659948999657540799998769798679998778999998739917777615774567777656200110136
Q ss_pred CCCHHHHHHHHHHCC-CCE-----EEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCH
Q ss_conf 879999999997111-003-----576989876367799884269999998477988899
Q gi|254780316|r 727 HIPAGTLVNIIKNVD-RLI-----DDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRD 780 (805)
Q Consensus 727 ~v~~~~I~~~i~~~~-~ll-----~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd 780 (805)
...+.+....+++.- ..+ ++..+||+|+|++++++|||++++++++...+||-.
T Consensus 381 ~p~~~e~~~i~~~iv~~~~~~~~~~sp~~FdVyeG~~~g~~KKsIaV~v~e~eenk~L~g 440 (701)
T 2odr_C 381 VPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLG 440 (701)
T ss_dssp CC----------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCEEEEEEEEECCCCCCCCC
T ss_conf 753587999999999999971887788379997661468885389999980378972258
No 8
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=100.00 E-value=0 Score=460.37 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=310.1
Q ss_pred HHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCHHHHHHCC----CCCHH
Q ss_conf 87616540155441345530135889998887521233455565258741355431000043113333113----45878
Q gi|254780316|r 347 GKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGI----DVPIE 422 (805)
Q Consensus 347 ar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~~~~~~I~l~~~~i~~ilG~----~i~~~ 422 (805)
-..+||+||||+|||||+|++++..+++||..+..+++++... ..+..+.....|. ....+
T Consensus 8 ~~s~Gl~~d~ShrFer~~~~ela~ka~ErA~~~~~~i~~~~~i---------------d~~lPr~~~~~Gk~HPl~~~ie 72 (648)
T 2odr_B 8 HHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKI---------------NESYPRIKPVFGKTHPVNDTIE 72 (648)
T ss_dssp ------------------------------------------C---------------TTSGGGCCCCCCBCCHHHHHHH
T ss_pred CCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---------------CCCCCCCCCCCCCCCCHHHHHH
T ss_conf 4357878305522013456776699999999964443067756---------------5458988877767283899999
Q ss_pred HHHHHHHHHHHHHHCCC---CCCEEE---ECCCCC---C-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999998402221034---562366---403454---3-3440256767676535233466765544345767899889
Q gi|254780316|r 423 DSLRILERLGFSVIGEY---DKFEVS---VPSWRQ---D-VEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQ 492 (805)
Q Consensus 423 ei~~iL~~Lgf~v~~~~---~~~~V~---vPs~R~---D-I~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~~~ 492 (805)
++.++|.+|||+..... +.|.+. +|+||+ | +..+.|++|||+|+|||||||+..+... . ........+
T Consensus 73 eIr~IL~rLGFee~~~p~Iv~~wnfD~LfvP~~HPaRDDtFyLe~DliEEVaRiyGYdnip~~~p~~~-~-~~~~~~~~~ 150 (648)
T 2odr_B 73 NLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKV-S-EHKESLQKI 150 (648)
T ss_dssp HHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------------------------------
T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCCCCCCCCCHHHCCEEECCCCHHHHHCCCCCCCCCCCCCCCC-C-CCCCHHHHH
T ss_conf 99999997798797488373535053106898774420735214763123202245223431245555-4-531013566
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 54678988787787740232100482576552000000002467764321015122110677643210158611345430
Q gi|254780316|r 493 SRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEV 572 (805)
Q Consensus 493 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEi 572 (805)
...+++++.+.+.||+|++||||++++....+.....++.+.||+++++++|||+++|||+.++++|++|+.+++++||+
T Consensus 151 ~~~~k~r~~l~~~G~~Evitysfv~~~~~~~~~~~~~~v~l~NPisSe~~vLRTh~~~gll~~l~~n~~r~~~pirlFEi 230 (648)
T 2odr_B 151 LHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSI 230 (648)
T ss_dssp ---------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 66655302222034000321023463443202565552113585532355658877468999999998579998389987
Q ss_pred CCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCC
Q ss_conf 244447775443100022103543101246202345443333146888753111111101453-3303305886567898
Q gi|254780316|r 573 SHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPG 651 (805)
Q Consensus 573 G~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPg 651 (805)
|+||+++....+.+.....+. .| | --...+|||++||.+++++..++.. ..+++.+...+++|||
T Consensus 231 GrVFR~D~~~D~tH~~~fhQl-------eG------l-ivg~~vdf~dLKg~le~lL~~Lg~~~~k~r~~~s~~Pf~hPg 296 (648)
T 2odr_B 231 DRCFRREQKEDKSHLMTYHSA-------SC------A-IAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPE 296 (648)
T ss_dssp EEEECCCSCCCSSCCSEEEEE-------EE------E-EECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTT
T ss_pred EEEECCCCCCCCCCCCCEEEE-------EE------E-EECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 778737874424357620047-------89------9-977876889999999999999678873899656778998991
Q ss_pred CEEEEEECC----EEE-EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEEEE
Q ss_conf 169999879----299-99985477899996687997899998787623545202456--63136898887200189996
Q gi|254780316|r 652 RSGIIKTSA----EIV-LGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKT--KKVVHLSSLHPVKRDLAFIV 724 (805)
Q Consensus 652 rsa~I~~~g----k~i-iG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~--~~~~~~s~fP~v~RDls~iv 724 (805)
++++|++.+ +.+ +|.+|++||.+++++||+.++++|++.+|.|.......... ..+..++.++.+.||+|+.+
T Consensus 297 ~ea~V~~~~~~~~~WlEIgg~G~vHP~VLk~~GId~~V~AFGLGLERLAMlk~gi~DIR~l~~p~f~~~~~s~rdlA~~v 376 (648)
T 2odr_B 297 TQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVASMV 376 (648)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCGGGSCCCCCHHHHHTTE
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 15899998167984899980653179999866969857999963899999873997377760777578885665654422
Q ss_pred --CCCCCHHHHHHHHHH----CCC--CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHH
Q ss_conf --688799999999971----110--03576989876367799884269999998477988899999
Q gi|254780316|r 725 --DQHIPAGTLVNIIKN----VDR--LIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDI 783 (805)
Q Consensus 725 --~~~v~~~~I~~~i~~----~~~--ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI 783 (805)
++...+.++..++++ +.+ -.+++.+||+|+|+++++||||++++++.++.++||.+..+
T Consensus 377 ~ldk~p~~~e~~~i~~~i~~~~~~~~~~~s~~~Fdvyeg~~~g~~kKsv~v~v~~~~enk~L~g~~~ 443 (648)
T 2odr_B 377 KLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSI 443 (648)
T ss_dssp EESCCCSSHHHHHHHHHHHHHHHHC----------------------------------------CC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCHHH
T ss_conf 4366864176899999999999863887887078875451479985289999993168876669568
No 9
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A*
Probab=100.00 E-value=1.9e-42 Score=318.84 Aligned_cols=336 Identities=15% Similarity=0.134 Sum_probs=235.7
Q ss_pred HHHHHHHCC---CCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--C-------HHHH-H-HH
Q ss_conf 767676535---23346676554-4345767899889546789887877877402321004--8-------2576-5-52
Q gi|254780316|r 460 VEEILRIYG---VDQIKSEPLPL-TQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFI--S-------KEQS-V-LF 524 (805)
Q Consensus 460 iEEIaRiyG---YdnIp~~~l~~-~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~--s-------~~~~-~-~~ 524 (805)
+|..++-|+ |.|||+.-+.. ..-...+...+....++++++++.++||.|.-+.-|. + ..++ + ++
T Consensus 15 ~~~~g~~~~~d~~~n~~~~i~~~~g~~l~~~~~HPl~~~~~~i~~~F~~~g~~~~~~~~f~~~d~~~~vet~~~NFD~L~ 94 (415)
T 3cmq_A 15 VELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLL 94 (415)
T ss_dssp EEETTEEEECCSSCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGT
T ss_pred EEECCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCEECCCCCC
T ss_conf 99898873577667689868730586666789996899999999999873866357876212589997327414202227
Q ss_pred HHHHHHCC-CC-CCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCC----EEHHHHCC-----
Q ss_conf 00000000-24-677643210151221106776432101586113454302444477754431----00022103-----
Q gi|254780316|r 525 GGGQRELE-IL-NPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQK----YMAAGIRK----- 593 (805)
Q Consensus 525 ~~~~~~i~-l~-NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~----~~~~~~~~----- 593 (805)
.+.+.+-+ +. +---++..+||+..-+...+.+.. +.. +++.+|+||+.+...... +.+.|+.-
T Consensus 95 ~P~dHPaRd~~DTfyl~~~~lLRthts~~q~~~l~~----~~~--~~~~~G~vyR~d~iD~~h~~~FhQ~eg~~v~~~~~ 168 (415)
T 3cmq_A 95 IPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHA----GLD--AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHE 168 (415)
T ss_dssp CCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHHHT----TCS--EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHC----CCC--CEEEECCCCCCCCCCCCCCCEEEECCEEEECCCCH
T ss_conf 899987567434167689870468898889999854----899--34764777157987764441123110466314000
Q ss_pred -------CC----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEECCE
Q ss_conf -------54----3101246202345443333146888753111111101453-33033058865678981699998792
Q gi|254780316|r 594 -------GS----SGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKTSAE 661 (805)
Q Consensus 594 -------~~----~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~~gk 661 (805)
+. ..-..........|......++||++||.++.++..++.. ..+++.++.++++|||++++|.++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~h~~e~~~~e~~~~~~~dLKg~le~ll~~l~~~~~~~r~~~~~fPft~Ps~e~~I~~~~~ 248 (415)
T 3cmq_A 169 LFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGE 248 (415)
T ss_dssp HTTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTEEEEEEEEEEETTE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEECCC
T ss_conf 00123444322211233334321000122111210888999999999996798757998407898767632799998885
Q ss_pred EE-EEEEEEECHHHHHHCCCCCCE-EEEEEEHHHHHHHHH----------------------CCCCCCCCCCCCCCCCCE
Q ss_conf 99-999854778999966879978-999987876235452----------------------024566313689888720
Q gi|254780316|r 662 IV-LGYFGEFHPNILDFFGLSNPI-CGFEVYLDSIPISQK----------------------KRTKTKKVVHLSSLHPVK 717 (805)
Q Consensus 662 ~i-iG~iG~ihP~i~~~~~i~~~v-~~~EI~ld~L~~~~~----------------------~~~~~~~~~~~s~fP~v~ 717 (805)
.+ +|.+|++||.+++++|++.++ ++|.+-++.+..... ......+|+++|+||+++
T Consensus 249 wiei~g~G~vhP~Vl~~~g~~~~~g~AFGlGleRlaml~~~i~DiR~~~~~D~rfl~Qf~~~~~~~~~~y~~~SkyP~v~ 328 (415)
T 3cmq_A 249 WLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVI 328 (415)
T ss_dssp EEEEEEEEEECHHHHHHTTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCCCEE
T ss_pred CCEEEEEECCCHHHHHHCCCCCCEEEEEEEECCHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 66687860257999986599876589998732578887616424888863249999861312344334677623489820
Q ss_pred EEEEEEECC-CCCHHHHHHHHHHC-CCCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 018999668-87999999999711-1003576989876367799884269999998477988899999999999999999
Q gi|254780316|r 718 RDLAFIVDQ-HIPAGTLVNIIKNV-DRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVV 795 (805)
Q Consensus 718 RDls~iv~~-~v~~~~I~~~i~~~-~~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i~~~ii~~l~ 795 (805)
|||||+||. ++++++|.++|+++ ++++++|++||+|+|++. ||||+|||++|||.+|||||+|||+++++|++.|+
T Consensus 329 RDlSf~v~~e~~~~~~l~~~ir~~~g~lle~v~lfD~Y~~~~~--gkkSla~rl~~rs~drTLtd~EVn~i~~~I~~~l~ 406 (415)
T 3cmq_A 329 NDISFWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKT--HKTSHCYRITYRHMERTLSQREVRHIHQALQEAAV 406 (415)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHGGGEEEEEEEEEEECTTT--CCEEEEEEEEECCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCC--CCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 0049999179768999999998738271779999987049999--96799999999899988898999999999999999
Q ss_pred HHHCCEEC
Q ss_conf 99511981
Q gi|254780316|r 796 KKTNAVLR 803 (805)
Q Consensus 796 ~k~ga~LR 803 (805)
++|||+||
T Consensus 407 ~~~~~~lR 414 (415)
T 3cmq_A 407 QLLGVEGR 414 (415)
T ss_dssp HHSCCEEC
T ss_pred HHHCEEEC
T ss_conf 97591867
No 10
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.5e-42 Score=319.64 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=173.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCH
Q ss_conf 98895467898878778774023210048257655200--0000002467764321015122110677643210158611
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG--GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIAD 566 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~--~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~ 566 (805)
+..+++.+++|+.|+++||+|++||||++++..+.+.. .+.+|+|+||+|+|+++||+||+||||+++++|++|++.+
T Consensus 4 d~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~v~l~NPls~d~~~lR~sLlpgLL~~~~~N~~~~~~~ 83 (213)
T 3ica_A 4 DRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLS 83 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 57689999999999978963001276789899987417875670795288656689998876864999987666534666
Q ss_pred HHHHHHCCCCCCCCCCC--CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 34543024444777544--3100022103543101246202345443333146888753111111101453330330588
Q gi|254780316|r 567 FAIFEVSHVYENDTPEG--QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGA 644 (805)
Q Consensus 567 i~lFEiG~Vf~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~ 644 (805)
+++||+|+||..+.... +.......+...++...+|..+...|....+.+|||++||++++++..++...........
T Consensus 84 ~~lFEiG~vf~~~~~~~~~~~~~~~~~e~~~l~~~~~G~~~~~~w~~~~~~~df~~~Kgive~ll~~lgi~~~~~~~~~~ 163 (213)
T 3ica_A 84 LYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTA 163 (213)
T ss_dssp EEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred EEEEEEEEEECCCCCCCCCCCCHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 35897411661477765432101002035189999988865666565433005999999999999982998321302255
Q ss_pred CCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHH
Q ss_conf 656789816999987929999985477899996687997899998787623
Q gi|254780316|r 645 PSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIP 695 (805)
Q Consensus 645 ~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~ 695 (805)
.+.+||+++|.++.+|+.+ |++|+|||.++++|+|+.|||+|||++|.|.
T Consensus 164 ~~~~~~~~~a~i~~~~~~i-G~~G~l~p~i~~~~~i~~~v~~~Ei~ld~Ll 213 (213)
T 3ica_A 164 DNDLYASAMEVKTRSGKLL-GTFGTVSTELIKRFEIEQPVYFAELLWDALM 213 (213)
T ss_dssp CCTTEEEEEEEEETTCCEE-EEEEEECHHHHHHTTCCSCEEEEEEEHHHHC
T ss_pred CCCCCCCCEEEEEECCCEE-EEEEEECHHHHHHCCCCCCEEEEEEEHHHHC
T ss_conf 6433566236887789599-9999988999987497998799999979939
No 11
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=100.00 E-value=6.7e-42 Score=315.00 Aligned_cols=205 Identities=20% Similarity=0.212 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCH
Q ss_conf 98895467898878778774023210048257655200--0000002467764321015122110677643210158611
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG--GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIAD 566 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~--~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~ 566 (805)
+..+++.+.+|+.|+++||+|++||||++++.++.+.. .++.|+|+||+|+|+++||+||+||||+++++|++|++++
T Consensus 4 ~k~~~l~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~v~l~NPls~e~~~lR~sLlp~LL~~~~~N~~~~~~~ 83 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNAD 83 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------C
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78899999999999978970311466689899987427876671895288756678888877988999998731567676
Q ss_pred HHHHHHCCCCCCCCCCCC--CEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CEEEECC
Q ss_conf 345430244447775443--1000221035431012462023454433331468887531111111014533-3033058
Q gi|254780316|r 567 FAIFEVSHVYENDTPEGQ--KYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLD-SLRFESG 643 (805)
Q Consensus 567 i~lFEiG~Vf~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~-~~~~~~~ 643 (805)
+++||+|+||..+..... .......+...++...+|..+...|..+...+|||++||+++++++.++... .+... .
T Consensus 84 ~~lFEiG~vf~~~~~~~~~~~~~~~~~e~~~L~~~~~G~~~~~~w~~~~~~~df~~lKg~le~ll~~lgi~~~~~~~~-~ 162 (213)
T 3ig2_A 84 LKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVG-N 162 (213)
T ss_dssp CEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEE-E
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHEEEC-C
T ss_conf 027987647736765566433456642106888998767665555665322309999999999999839982343320-3
Q ss_pred CCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHH
Q ss_conf 8656789816999987929999985477899996687997899998787623
Q gi|254780316|r 644 APSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIP 695 (805)
Q Consensus 644 ~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~ 695 (805)
..+.+||+++|.+..+|+. +|++|+|||.++++|+|+.|||+|||||+.|.
T Consensus 163 ~~~~~~~~~~a~~~~~~~~-iG~~G~lhP~v~~~~~i~~~v~~~Eidl~~Ll 213 (213)
T 3ig2_A 163 LSDDIYSTALTVNTKGGKR-LATFGVVTKKMLKAFDVDNEVYYADLNWKELM 213 (213)
T ss_dssp ECSSSEEEEEEEECTTCCE-EEEEEEECHHHHHHTTCCEEEEEEEEETGGGC
T ss_pred CCCCCCCCCEEEEEECCCE-EEEEEEECHHHHHHCCCCCCEEEEEEEHHHHC
T ss_conf 3244658633688768969-99999998999997397998799999979939
No 12
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=100.00 E-value=5.2e-36 Score=273.17 Aligned_cols=133 Identities=29% Similarity=0.526 Sum_probs=120.1
Q ss_pred CCCC-CCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 7899-98899999987458604211124656874899999975657998-708999759995798975483455897898
Q gi|254780316|r 12 LDTD-VSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGV 89 (805)
Q Consensus 12 v~~~-~~~~~l~~~lt~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~ 89 (805)
++++ ...+++.+.|+..|||+|.+.+. ..++|||+|++|+|||||| |++|+||+|+ +.+||||||+|+++|++|+
T Consensus 62 i~l~~~~i~~l~~~l~~~gfe~e~~~d~--~~k~vVG~V~~~~~HP~aDkL~v~~Vd~G~-~~~qIV~ga~n~~~g~~vv 138 (199)
T 3bu2_A 62 IKLTETLVQAFQKAIEAAGFTYKLDADF--TPKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVEAGQKVV 138 (199)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCCCCCCC--CCSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCCTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCC--CCCEEEEEEEEEEECCCCCEEEEEEEECCC-CCEEEEECCCCCCCCCEEE
T ss_conf 1269999999999998769842632457--799799999998965999968999998278-6368995065753676500
Q ss_pred EECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCC--CCCCEEEECCCCCCCCCHHH
Q ss_conf 966877925898398331205865054541188769985--47750781688888845588
Q gi|254780316|r 90 WAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSD--DSASIMELPIDAPVGGRLSD 148 (805)
Q Consensus 90 ~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~--~~~gI~~l~~~~~~G~~~~~ 148 (805)
+|++||+|| ++++|++++|||++|+|||||++|||+++ ++.||++||+++++|+++.+
T Consensus 139 va~~Ga~lp-~g~~I~~~klrGv~S~GMlcS~~ELgl~~~~~~~GIl~l~~d~~vG~~~~~ 198 (199)
T 3bu2_A 139 VAKVGAVMP-SGMVIKDAELRGVASSGMICSMKELGLPNAPQEKGIMVLSDDYTVGQSFFE 198 (199)
T ss_dssp EECTTCBCT-TSCBCCEEEETTEEEESEECCTTTTTCSSCBSCCSCCEECTTSCTTSBSBC
T ss_pred CCCEEEEEC-CCCCCCCCEECCCCCCEEEEEHHHCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 374479967-887555433225025539820788499877776635999999989994245
No 13
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=99.89 E-value=5.5e-25 Score=194.97 Aligned_cols=143 Identities=18% Similarity=0.156 Sum_probs=108.5
Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHH
Q ss_conf 04211124656874899999975657998-70899975999579897548345589789896687792589839833120
Q gi|254780316|r 31 EVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKI 109 (805)
Q Consensus 31 EVe~i~~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~i 109 (805)
|.|++. +.--.++||+|+++++||+|| |++|+||+|+++.+||||||+|+..+.. ++|+.+. ....||++||
T Consensus 1 e~~e~~--~skldirVG~I~~v~~hP~adkL~v~~Vd~G~~~~~~IvsG~~n~~~~e~----l~g~~v~-~~~nlk~~ki 73 (172)
T 1ntg_A 1 EPEEVI--PSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEE----LQDRLVV-VLCNLKPQKM 73 (172)
T ss_dssp -CCCCC--GGGSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGG----TTTCEEE-EECCBCCEEE
T ss_pred CCCCCC--CCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCC----CCCEEEE-EEEEECCCCC
T ss_conf 962246--76122899999998978999856799998489808999825420147643----2561686-4561015524
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf 586505454118876998547750781688888845588708885599987087857-----665557899987764115
Q gi|254780316|r 110 RGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRS-----DCIGVRGIALDLVAAGLG 184 (805)
Q Consensus 110 rGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~~~~l~l~D~i~ei~iTpNR~-----D~ls~~GiARElaa~~~~ 184 (805)
||++|+|||||+.|+|..+... ++..|+++++|+.+. +-++. ..+.+.+.|+. +|++++++||+..|.+..
T Consensus 74 rGv~S~GMll~a~~~g~~~~~~-~l~~p~~a~~G~~v~-~~g~~--~~~p~~~l~~k~~~~e~~~~~l~v~~~~~a~~k~ 149 (172)
T 1ntg_A 74 RGVESQGMLLCASIEGINRQVE-PLDPPAGSAPGEHVF-VKGYE--KGQPDEELKPKKKVFEKLQADFKISEECIAQWKQ 149 (172)
T ss_dssp TTEEECCEECEEEEESSSEEEE-ECBCCBTCCTTCEEE-ETTCS--SCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETT
T ss_pred CCCCCCEEEEEEECCCCCCCEE-EECCCCCCCCCCEEE-ECCCC--CCCCCCCCCCCHHHHHHHCCCCEECCCCEEEECC
T ss_conf 5720320898701289986179-847999989926899-78877--7886423584255688766785799887899889
No 14
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=99.85 E-value=4.3e-22 Score=174.43 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=84.7
Q ss_pred CCCCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCC
Q ss_conf 24656874899999975657998-70899975999579897548345589789896687792589839833120586505
Q gi|254780316|r 37 NREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIEST 115 (805)
Q Consensus 37 ~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~ 115 (805)
.+..+ .++||+|+++++||+|| |++|+||+|+ +.+|||||++|+..|+.|+||. ++++++||+.|+
T Consensus 132 dF~k~-dl~vg~I~~~~~hp~adkL~~~~vd~G~-~~~~iv~g~~~~~~~~~v~van-----------l~p~k~~G~~Se 198 (241)
T 2e8g_A 132 PVIAV-DIVVGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVKEGNRVAVAL-----------LPPRNFFGIVSE 198 (241)
T ss_dssp GGGGS-CEEEEEEEEEEECTTCTTCEEEEEECSS-CEEEEEESCTTCCTTCEEEEEC-----------CCCEEETTEEEC
T ss_pred CCCEE-EEEEEEEEEEEECCCCCEEEEEEEEECC-CCEEEEECCCHHCCCCEEEEEE-----------CCCCCCCCCCCC
T ss_conf 53032-3899999998877999868999998368-7425661251222898899982-----------488500674368
Q ss_pred CHHHHHHHCCCCCCCCCEEEECCCCCCC
Q ss_conf 4541188769985477507816888888
Q gi|254780316|r 116 GMMCSEKELMLSDDSASIMELPIDAPVG 143 (805)
Q Consensus 116 GMlCS~~ELgl~~~~~gI~~l~~~~~~G 143 (805)
||+||+.|+|+.+.+.||++||+++|++
T Consensus 199 GM~~~a~e~g~~~~~~~i~~lp~~~p~~ 226 (241)
T 2e8g_A 199 GMFLGAGEGVLKNVKGEIGGLPKGIPLE 226 (241)
T ss_dssp CEECEETTEECCBCBSCTTSCCBSCCGG
T ss_pred CEEEECHHCCCCCCCCCEEECCCCCCHH
T ss_conf 7783842048975678804694979676
No 15
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=99.81 E-value=2.8e-21 Score=168.72 Aligned_cols=94 Identities=17% Similarity=0.334 Sum_probs=82.1
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
.++||+|+++++||+|| |++|+||+|+ +.+||||||+|+..+ -+++|+.++ ..+.|+++||||+.|+|||||+
T Consensus 12 dirVG~I~~~~~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~----~~l~G~~v~-~~~nlk~~ki~Gv~SeGMl~s~ 85 (107)
T 1mkh_A 12 DLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKP----EELLNRYVV-VVANLEPKKLRGIGSQGMLLAA 85 (107)
T ss_dssp CEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCH----HHHTTCEEE-EETTSCCEEC-CCEECCCBCEE
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEECCC-EEEEEEEECCEEECC----CCCCCCEEE-EECCCCCCCCCCCCCCEEEEEE
T ss_conf 0799999998878999822899998189-457899600104173----010698985-6148886479981478899853
Q ss_pred HHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 8769985477507816888888455
Q gi|254780316|r 122 KELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
.| +++.+++.+|+++++|+++
T Consensus 86 ~e----~~~~~ll~~~~~~~~G~~v 106 (107)
T 1mkh_A 86 DD----GERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp EC----SSCEEECCCSSCCCTTCEE
T ss_pred EC----CCCEEEEECCCCCCCCCCC
T ss_conf 56----9917998689998888806
No 16
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, homodimer, chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=99.72 E-value=7e-20 Score=158.75 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=92.1
Q ss_pred CCEEEEEECCCCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEE
Q ss_conf 8604211124656874899999975657998-708999759995798975483455897898966877925898398331
Q gi|254780316|r 29 GLEVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVR 107 (805)
Q Consensus 29 G~EVe~i~~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~ 107 (805)
|.|++.|++|..+ .++||+|+++++||||| |.+|+|++|.. ..+++|+++|++.+. .+.+++|..++ ..+.||++
T Consensus 1 g~~~~~iddF~kl-DirVG~I~~~e~hp~adkl~~~~v~~g~~-~~~~~~~~~~~~~~~-~~~~l~g~~v~-~~~nlkp~ 76 (113)
T 2nzh_A 1 GSHMAVIDDFEKL-DIRTGTIVKAEEFPEARVPAIKLVIDFGT-EIGIKQSSAQITKRY-KPEGLINKQVI-AVVNFPPR 76 (113)
T ss_dssp ---CHHHHHHHHC-CEEEEEEEEEEEETTSSSCEEEEEEECHH-HHCEEEEEECCTTTC-CHHHHTTCEEE-EETTSCCE
T ss_pred CCCEEEEECCCCC-CEEEEEEEEEEECCCCCCEEEEEEEECCC-CEEEEEECCCCCCCC-CCHHCCCCEEE-EEEECCCC
T ss_conf 9841474410041-37999999999876766213899995796-315799622420331-70240366034-46504543
Q ss_pred HHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 205865054541188769985477507816888888455
Q gi|254780316|r 108 KIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 108 ~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
||||++|+|||||+.| .+++.+++.+|+++++|+.+
T Consensus 77 kirGv~SeGMil~~~~---~~~~~~ll~~~~~~~~G~~v 112 (113)
T 2nzh_A 77 RIAGFKSEVLVLGGIP---GQGDVVLLQPDQPVPNGTKI 112 (113)
T ss_dssp EETTEEECSEECEEEE---ETTEEEEEEESSCCCTTCEE
T ss_pred EEEEEECCEEEEEEEC---CCCCEEEEECCCCCCCCCCC
T ss_conf 0431004659998687---99989998689998899868
No 17
>2cwp_A Metrs related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=99.72 E-value=1.7e-18 Score=148.93 Aligned_cols=109 Identities=22% Similarity=0.295 Sum_probs=79.1
Q ss_pred HCCCEEEEEECCCCCCCEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCC-CCCCEEEEECCCCEECCCCEEE
Q ss_conf 458604211124656874899999975657998-70899975999579897548345-5897898966877925898398
Q gi|254780316|r 27 SIGLEVEKVDNREALSPFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNV-RVGLLGVWAPPGSCIPENNMIV 104 (805)
Q Consensus 27 ~~G~EVe~i~~~~~~~~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv-~~g~~V~~A~~Ga~lp~g~~~i 104 (805)
|.++|+.+++.+..++ ++||+|+++++||+|| |++|+||+|+ +.+|||||+.+. .+. .++|.++. .-..+
T Consensus 1 m~~~e~i~~ddF~klD-irVG~I~~v~~hp~adkL~~~~Vd~G~-~~r~iv~gi~~~~~~e-----~l~Gk~vv-~v~Nl 72 (112)
T 2cwp_A 1 MNYMELYDVDEFWKFQ-MKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPE-----ELEGKKFI-FVVNL 72 (112)
T ss_dssp ---CCCCCHHHHHTSC-EEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGG-----GTTTCEEE-EECSS
T ss_pred CCCCCEECHHHCCEEE-EEEEEEEEEEECCCCCCCEEEEEECCC-CCEEEEEEEHHHCCCC-----CCCCCEEE-EECCC
T ss_conf 9863274764600141-799999997768998715799997279-8077746410342962-----00697899-87587
Q ss_pred EEEHHCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 331205865054541188769985477507816888888455
Q gi|254780316|r 105 NVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 105 ~~~~irGv~S~GMlCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
|++||||++|+||+|+..+ .+....++..|+++++|+.+
T Consensus 73 kp~kirGv~SeGMil~~~~---~~g~~~ll~~~~~~~~G~~v 111 (112)
T 2cwp_A 73 KPKKFSGVESQGMLILAET---EDGKVYLIPVPEEVPVGARV 111 (112)
T ss_dssp CCEEETTEEECSEECCEEC---TTSCEECCBCCTTSCTTCEE
T ss_pred CCCCCCCEECCEEEEEEEC---CCCEEEEECCCCCCCCCCCC
T ss_conf 8511888133449998876---99969996499999898703
No 18
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=99.71 E-value=1e-18 Score=150.44 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=76.7
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
.++||+|+++++||||| |++|+||+|+++.+|||||+.|..... .++|.... ....||+++|||++|+||+||+
T Consensus 7 dirVG~I~~v~~hp~AdkL~~~~VD~G~~~~r~IvsG~~~~~~~e----~l~gk~v~-~v~Nlkp~kirGv~SeGMil~a 81 (171)
T 1fl0_A 7 DLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLE----QMQNRMVI-LLCNLKPAKMRGVLSQAMVMCA 81 (171)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGG----GGTTEEEE-EECCSCCEESSSCEECCEECEE
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHH----HHCCCEEE-EEEEEECCCCCCCCCCEEEEEE
T ss_conf 789999999887999985378999917980699997004336856----73683687-7754605507570042699987
Q ss_pred HHCCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf 87699854775078168888884558
Q gi|254780316|r 122 KELMLSDDSASIMELPIDAPVGGRLS 147 (805)
Q Consensus 122 ~ELgl~~~~~gI~~l~~~~~~G~~~~ 147 (805)
. ++++.+++..|+++++|+.+.
T Consensus 82 ~----~~~~~~ll~pp~~~~~G~rv~ 103 (171)
T 1fl0_A 82 S----SPEKIEILAPPNGSVPGDRIT 103 (171)
T ss_dssp E----ETTEEEECBCCTTCCTTCBCC
T ss_pred E----CCCCEEEEECCCCCCCCCEEE
T ss_conf 5----799779986899998915997
No 19
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=99.71 E-value=9.3e-18 Score=143.69 Aligned_cols=89 Identities=31% Similarity=0.402 Sum_probs=74.2
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCC-----CCCEEEEECCCCEECCCCEEEEEEHHCCCCCCC
Q ss_conf 74899999975657998-708999759995798975483455-----897898966877925898398331205865054
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVR-----VGLLGVWAPPGSCIPENNMIVNVRKIRGIESTG 116 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~-----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~G 116 (805)
.++||+|+++++||||| |++|+||+|+ +.+|||||+.|.. .|.+|++.. .+|++||||++|+|
T Consensus 16 dirVG~I~~~e~hp~AdkL~~~~Vd~G~-~~~~iv~g~~~~~~~e~lig~~v~~v~----------Nlkp~kirGv~SeG 84 (111)
T 1pyb_A 16 DLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVA----------NLKPRKIFGIESQG 84 (111)
T ss_dssp CEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEET----------TSCSSCTTSCCBSS
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCC-CEEEEEEEECCCCCHHHHCCCEEEEEE----------CCCCCEECCCCCCE
T ss_conf 4899999999866885201877830487-100688600231280351463368886----------04763176843327
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 541188769985477507816888888455
Q gi|254780316|r 117 MMCSEKELMLSDDSASIMELPIDAPVGGRL 146 (805)
Q Consensus 117 MlCS~~ELgl~~~~~gI~~l~~~~~~G~~~ 146 (805)
|+||+.+ +++.+++..|+++++|+.+
T Consensus 85 Mil~~~d----~~~~~ll~p~~~~~~G~~i 110 (111)
T 1pyb_A 85 MILAASD----GENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp EECEEEC----SSCEEEEEESSCCCTTEEC
T ss_pred EEEEEEC----CCCEEEEECCCCCCCCCCC
T ss_conf 9998866----9966998689998898866
No 20
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X
Probab=99.65 E-value=3.9e-17 Score=139.29 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=74.0
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHH
Q ss_conf 74899999975657998-70899975999579897548345589789896687792589839833120586505454118
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSE 121 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~ 121 (805)
.++||+|+++++||+|| |.+|+||+|+ +.+|||||+.+... +-+++|.+++ ....++++||||+.|+||+||.
T Consensus 13 dirVG~I~~~e~hp~adkL~v~~VD~G~-~~~~iv~g~~~~~~----~e~lvGk~v~-~v~Nlkp~kirGv~SegMil~~ 86 (111)
T 1pxf_A 13 EMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYS----EEELMGKTVV-VLCNLQKAKMRGETSECMLLCA 86 (111)
T ss_dssp CEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSH----HHHHTTCEEE-EETTCSCCCBTTBCCCCCBCEE
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEECCC-CCCEEEEEECCCCC----HHHCCCCEEE-EECCCCCCEECCEECCEEEEEE
T ss_conf 0799999999876898660899998079-63119995034589----7991899998-8834066308683241799986
Q ss_pred HHCCCCCCCCCEEEE--CCCCCCCCCH
Q ss_conf 876998547750781--6888888455
Q gi|254780316|r 122 KELMLSDDSASIMEL--PIDAPVGGRL 146 (805)
Q Consensus 122 ~ELgl~~~~~gI~~l--~~~~~~G~~~ 146 (805)
. .+++.++..| ++++++|+.+
T Consensus 87 ~----~~~~~~~~ll~p~~~~~~G~rv 109 (111)
T 1pxf_A 87 E----TDDGSESVLLTPERMMPAGVRV 109 (111)
T ss_dssp E----CTTSCCEEECCCSSCCCTTCBC
T ss_pred E----CCCCCEEEEECCCCCCCCCCEE
T ss_conf 8----3789808997389999999885
No 21
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A*
Probab=99.52 E-value=8.2e-14 Score=115.68 Aligned_cols=211 Identities=12% Similarity=0.044 Sum_probs=145.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCH
Q ss_conf 98895467898878778774023210048257655200--0000002467764321015122110677643210158611
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG--GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIAD 566 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~--~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~ 566 (805)
.......+.+|+++.+.||.||.|..+.+.+.....+. ........++.+.++ .||+++.|++...+..+.+.....
T Consensus 78 ~~~~~i~~~ir~~f~~~Gf~EV~TP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lr~~~~~~~~~~~~~~~~~~~~p 156 (291)
T 2zin_A 78 NYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNF-CLRPMLAPNLYNYLRKLDRALPDP 156 (291)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTE-EECSCSHHHHHHHHHHHTTTSCSS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCHH-CCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 5999999999999998879999765223312201368887741212132578011-266423451457778776521334
Q ss_pred HHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 34543024444777544310002210354310124620234544333314688875311111110145333033058865
Q gi|254780316|r 567 FAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPS 646 (805)
Q Consensus 567 i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~ 646 (805)
+|+||+|+||..+..... +. ..++...|.......+|.++++.++.+++.++.. +......
T Consensus 157 ~r~f~ig~vfR~e~~~~~-h~--------------~eF~q~e~~~~~~~~~~~dl~~~~~~~l~~lg~~----~~~~~~~ 217 (291)
T 2zin_A 157 IKIFEIGPCYRKESDGKE-HL--------------EEFTMLNFCQMGSGCTRENLESIITDFLNHLGID----FKIVGDS 217 (291)
T ss_dssp EEEEEEEEEECCCSCSSS-CC--------------SEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCC----CEEECC-
T ss_pred CEEEEECCEEEECCCCCC-CC--------------CCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC----EEEECCC
T ss_conf 024664101220345678-88--------------8638999999899997999999999999985992----7871366
Q ss_pred CCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCC-CCCCCCCCCCCEEEE
Q ss_conf 67898169999879299999854778999966879978999987876235452024566-313689888720018
Q gi|254780316|r 647 WYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTK-KVVHLSSLHPVKRDL 720 (805)
Q Consensus 647 ~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~-~~~~~s~fP~v~RDl 720 (805)
+++.+++..+..+...+ |..|..||.+++++++..|++++.+.++.|........... .++..+-|..++++|
T Consensus 218 ~~~~~~~~~~~~~~~ei-~~~~~~~~~v~~~~gid~p~~~~g~g~erla~~~~~~~dir~~~r~~~y~~Giel~~ 291 (291)
T 2zin_A 218 CMVYGDTLDVMHGDLEL-SSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNL 291 (291)
T ss_dssp ----CEEEEEEETTEEE-EEEEESCCGGGGGGTCCSCEEEEEEEHHHHHHHHTTCSSGGGGSSCSSEETTEESCC
T ss_pred CCCCCCCCCCCCCCEEE-ECCCEECHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCHHHHHHHHCEECCEECCC
T ss_conf 56767660216687574-038601699998669999818867589999987529993455541230006502369
No 22
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=99.45 E-value=1.2e-13 Score=114.53 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=71.6
Q ss_pred CEEEEEEEEEEECCCCC--CCEEEEECCCCCEEEEECCCCCCC-----CCCEEEEECCCCEECCCCEEEEEEHHCCCCCC
Q ss_conf 74899999975657998--708999759995798975483455-----89789896687792589839833120586505
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD--CAILRIDTGKHQEIQVVCGAPNVR-----VGLLGVWAPPGSCIPENNMIVNVRKIRGIEST 115 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad--l~v~~Vd~g~~~~~~IvcgA~Nv~-----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~ 115 (805)
.+.||+|+++++||+|| |.+++||+|+.+.+|||||..+.. .|.+|++.. | +|++||||++|+
T Consensus 11 dirVG~I~~~e~~p~adK~l~~l~VD~G~~~~r~ivsgi~~~~~~e~LiGk~Vv~v~-------N---lkp~ki~Gv~Se 80 (109)
T 1gd7_A 11 DLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAV-------N---LGAKRVAGFLSE 80 (109)
T ss_dssp CEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEEC-------S---SCCEEETTEEEC
T ss_pred CEEEEEEEEEEECCCHHHHHHHEECCCCCCCEEEEEEEHHCCCCHHHHCCCEEEEEE-------C---CCCCEECCCCCC
T ss_conf 479999999998677146454301204887148987400312698895799899998-------6---787627881378
Q ss_pred CHHHHHHHCCCCCCCCCEEEE--CCCCCCCCCH
Q ss_conf 454118876998547750781--6888888455
Q gi|254780316|r 116 GMMCSEKELMLSDDSASIMEL--PIDAPVGGRL 146 (805)
Q Consensus 116 GMlCS~~ELgl~~~~~gI~~l--~~~~~~G~~~ 146 (805)
||+++ .++++.++..| ++++++|+.+
T Consensus 81 gMiL~-----~~~~~~~~~ll~p~~~~~~G~rv 108 (109)
T 1gd7_A 81 VLVLG-----VPDEAGRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp SEECE-----EECTTSCEEEEEESSCCCTTCBC
T ss_pred EEEEE-----EECCCCCEEEECCCCCCCCCCCC
T ss_conf 79998-----88799929997389999798822
No 23
>3g48_A Chaperone CSAA; structural genomics, niaid structural genomic centers for infectious diseases; 1.50A {Bacillus anthracis}
Probab=99.45 E-value=9.3e-15 Score=122.38 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=65.2
Q ss_pred CEEEEEEEEEEECCCCC-CCEEEEECCCCCEEEEECCCCCCC------CCCEEEEECCCCEECCCCEEEEEEHHCCCCCC
Q ss_conf 74899999975657998-708999759995798975483455------89789896687792589839833120586505
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAILRIDTGKHQEIQVVCGAPNVR------VGLLGVWAPPGSCIPENNMIVNVRKIRGIEST 115 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v~~Vd~g~~~~~~IvcgA~Nv~------~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~ 115 (805)
.++||+|+++++||||| |.+|++++|.+...++||++.+-. .|.+|++. ..+|++||||++|+
T Consensus 14 dirVG~I~~~e~hp~adkl~~~~~~d~g~~~~~~v~~~~~~~~~~e~lvgk~v~~v----------~Nlkp~kirGv~Se 83 (112)
T 3g48_A 14 DLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAV----------VNFPPKRVAGFKSE 83 (112)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEE----------CCSCCEEETTEEEC
T ss_pred CEEEEEEEEEEECCCHHHEEEEEEEECCCCCEEEEEEEEECCCCHHHHCCCEEEEE----------CCCCCCEECCCCCC
T ss_conf 17999999999877813414567861683340699862000178547216407997----------07886318880377
Q ss_pred CHHHHHHHCCCCCCCCC-EEEE--CCCCCCCCCH
Q ss_conf 45411887699854775-0781--6888888455
Q gi|254780316|r 116 GMMCSEKELMLSDDSAS-IMEL--PIDAPVGGRL 146 (805)
Q Consensus 116 GMlCS~~ELgl~~~~~g-I~~l--~~~~~~G~~~ 146 (805)
||+|+.. +++| +..| |+++++|+.+
T Consensus 84 GMiL~~~------d~~~~~~ll~p~~~~~~G~~i 111 (112)
T 3g48_A 84 VLVLGGV------PEAGDVVLLQPNMELPNGTKI 111 (112)
T ss_dssp SEECEEE------EETTEEEECCCSSCCCTTCBC
T ss_pred EEEEEEE------CCCCCEEEEECCCCCCCCCCC
T ss_conf 7999888------899909997089999898847
No 24
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.18 E-value=6.2e-10 Score=88.17 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 32101512211067764321015861134543024444777544310002210354310124620234544333314688
Q gi|254780316|r 540 DMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLF 619 (805)
Q Consensus 540 e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~ 619 (805)
...+|||..-++...++..-.++..+.+++|-+|+||+++.-....+.....+.... .-...+.|-
T Consensus 191 ~~llLRTHTS~~q~r~l~~l~e~~~~Pir~~s~GrVyRrD~i~D~tH~~~FhQ~Egl--------------vvd~~vt~~ 256 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCV--------------VVGEDVSVD 256 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEE--------------EECTTCCHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEEE--------------EECCCCCHH
T ss_conf 011413668712599999998527998056336654445555642117877377768--------------960787899
Q ss_pred HHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEE----CCE-EEEEEEEEECHHHHHHCCCCCCEEEEEEEHHH
Q ss_conf 8753111111101453-33033058865678981699998----792-99999854778999966879978999987876
Q gi|254780316|r 620 DAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKT----SAE-IVLGYFGEFHPNILDFFGLSNPICGFEVYLDS 693 (805)
Q Consensus 620 dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~----~gk-~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~ 693 (805)
++|+.++.++..++.. -.+++.++-.+|.+|+-..+++. .|+ .-+|-+|.+||.+++++|+..++++|-+-+|.
T Consensus 257 dLK~~L~~f~~~~~~~~~k~R~~~syFPfTePs~EveV~~~~~~~g~WlEIlGcGmv~P~VL~~~Gid~~g~AfGlGlER 336 (549)
T 2du7_A 257 DGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVER 336 (549)
T ss_dssp HHHHHHHHHHGGGTCCCCCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEEEEEEBHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECHHH
T ss_conf 99999999999977988389878888899999657899997088981899957847788999856979876898763999
Q ss_pred HHHHHHCCCCCCC--CCCCCCCCCCEEEEEEE-----ECCCCCHHHHHHH
Q ss_conf 2354520245663--13689888720018999-----6688799999999
Q gi|254780316|r 694 IPISQKKRTKTKK--VVHLSSLHPVKRDLAFI-----VDQHIPAGTLVNI 736 (805)
Q Consensus 694 L~~~~~~~~~~~~--~~~~s~fP~v~RDls~i-----v~~~v~~~~I~~~ 736 (805)
|......-..... +..+-..-.+.||||=. +|....-.++...
T Consensus 337 LAMl~ygI~DIR~Ly~p~~~~~~~sd~~~a~~i~~~~~p~t~~~~~~~~~ 386 (549)
T 2du7_A 337 LAMIIYGYEDVRAMVYPQFYEYRLSDRDIAGMIRVDKVPILDEFYNFANE 386 (549)
T ss_dssp HHHHHTTCSCSHHHHSSSSSCCCCCHHHHHTTCCCSCCCSSHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99997299767764167554243663055445413247664789999999
No 25
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.14 E-value=8e-10 Score=87.38 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=139.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH---HHHHHH-------HHCCCCCCCCC--------------
Q ss_conf 767899889546789887877877402321004825765---520000-------00002467764--------------
Q gi|254780316|r 484 DKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV---LFGGGQ-------RELEILNPISA-------------- 539 (805)
Q Consensus 484 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~---~~~~~~-------~~i~l~NPlS~-------------- 539 (805)
..+...+.....+++|+.+.++||.|+.+.+++-.+..+ +|.+.+ +..=|.+|-..
T Consensus 220 ~~G~~HPl~~~~~~ir~if~~mGF~E~~~~~~Ves~fwNFDaLf~PqdHPaRd~~DTfYl~~~~~~~~~~~d~~~~v~~~ 299 (508)
T 3l4g_A 220 DSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRT 299 (508)
T ss_dssp CCCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEECCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 88885879999999999998689887358981562013135334874589887368688568643344628999887766
Q ss_pred --------------------CCCCCCCHHHCHHHHHHHHHCC-CCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCC
Q ss_conf --------------------3210151221106776432101-5861134543024444777544310002210354310
Q gi|254780316|r 540 --------------------DMSNMRTSLLPGLLKATGRNVD-RAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGI 598 (805)
Q Consensus 540 --------------------e~s~lR~SLlp~LL~~~~~N~~-r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~ 598 (805)
...+|||...+.-...+..... ...+.+++|-+|+||+++.-.. .+.....+..
T Consensus 300 h~~g~~~~~g~~~~~~~~~~~~~vLRtHtt~~~~r~l~~~~~~~~~~p~k~f~i~rvfR~e~~D~-tH~~~fhQ~e---- 374 (508)
T 3l4g_A 300 HSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDA-THLAEFHQIE---- 374 (508)
T ss_dssp HHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCS-SSCSEEEEEE----
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCC----
T ss_conf 41277665454444343332233445788721099999886358989804524555234677867-6577653031----
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECC--E-EEEEEEEEECHHHH
Q ss_conf 12462023454433331468887531111111014533303305886567898169999879--2-99999854778999
Q gi|254780316|r 599 EGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSA--E-IVLGYFGEFHPNIL 675 (805)
Q Consensus 599 ~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~g--k-~iiG~iG~ihP~i~ 675 (805)
|. -....+.|.++||.++.++..++. ..++|.++-+||-+|..-..++..| + .-+|-+|.+||.++
T Consensus 375 ---g~-------v~~~~~~~~~L~~~l~~~~~~lg~-~~vR~~paYfPfTePS~Ev~v~~~g~~~WlEv~g~G~~rpevL 443 (508)
T 3l4g_A 375 ---GV-------VADHGLTLGHLMGVLREFFTKLGI-TQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEML 443 (508)
T ss_dssp ---EE-------EEEESCCHHHHHHHHHHHHHTTTC-CCCEEEECCCTTCSSEEEEEECCSTTSSCEEEEEEECCCHHHH
T ss_pred ---CE-------EECCCCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHH
T ss_conf ---14-------622785699999999999997399-6487068989999980899998389997489825725779999
Q ss_pred HHCCCCC--CEEEEEEEHHHHHHH------------------HHCCCCCCCCCCCCCCCCCE
Q ss_conf 9668799--789999878762354------------------52024566313689888720
Q gi|254780316|r 676 DFFGLSN--PICGFEVYLDSIPIS------------------QKKRTKTKKVVHLSSLHPVK 717 (805)
Q Consensus 676 ~~~~i~~--~v~~~EI~ld~L~~~------------------~~~~~~~~~~~~~s~fP~v~ 717 (805)
+.+|++. ++++|-+-|+.|... ........++.+.+++|+.+
T Consensus 444 ~~~Gi~~~~~~~AfGlGLERlAMl~~gI~DIR~l~~~~~~l~~~~~~~~~~~~~~~~~p~~~ 505 (508)
T 3l4g_A 444 LPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDAEPRPPPTQ 505 (508)
T ss_dssp GGGTCCTTEEEEEEEEESHHHHTTTTTCSCGGGTSSTTCCHHHHHHCCCTTSSTTTCC----
T ss_pred HHCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCEECCCCCCCCCCC
T ss_conf 86698989649998643989999980997677862578888887348741115677898710
No 26
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.12 E-value=2e-09 Score=84.51 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=114.4
Q ss_pred CCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67764321015122110677643210158611345430244447775443100022103543101246202345443333
Q gi|254780316|r 535 NPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCR 614 (805)
Q Consensus 535 NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 614 (805)
.|.| ...+|||..-++-..++.+-..++.+.+|+|-+|+||+++......+.....+.. |.. -..
T Consensus 175 ~~~s-~~~lLRTHTS~~q~~~lr~l~~~~~~Piri~s~GrVyRrD~aiDatH~~~FhQvE-------Glv-------Vd~ 239 (534)
T 2du3_A 175 KPIS-STLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSAS-------CVL-------VDE 239 (534)
T ss_dssp CCEE-EEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEE-------EEE-------ECS
T ss_pred CCCC-CCEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEE-------EEE-------ECC
T ss_conf 3323-0002203567216999999973689985896156222356556543174105710-------488-------669
Q ss_pred CCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCEEEEEE------------CCE-EEEEEEEEECHHHHHHCCC
Q ss_conf 146888753111111101453-33033058865678981699998------------792-9999985477899996687
Q gi|254780316|r 615 FVDLFDAKADALSVIEPFVSL-DSLRFESGAPSWYHPGRSGIIKT------------SAE-IVLGYFGEFHPNILDFFGL 680 (805)
Q Consensus 615 ~~df~dlKg~v~~ll~~l~~~-~~~~~~~~~~~~~hPgrsa~I~~------------~gk-~iiG~iG~ihP~i~~~~~i 680 (805)
.++|-++||.++.++..++.. -.+++.++-.+++.|+-..+++. +++ .-+|-+|.+||.+++.+||
T Consensus 240 ~vs~~dLkg~L~~fl~~~f~~~~k~R~rpsyFPFtePs~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P~VL~~~GI 319 (534)
T 2du3_A 240 ELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDI 319 (534)
T ss_dssp SCCHHHHHHHHHHHHGGGTCCEEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf 88899999999999999768775797468879999995347999950588655557589669996774668788864698
Q ss_pred CCCEEEEEEEHHHHHHHHHCCCCCCCCCC---CCCCCCCEEEEEEE
Q ss_conf 99789999878762354520245663136---89888720018999
Q gi|254780316|r 681 SNPICGFEVYLDSIPISQKKRTKTKKVVH---LSSLHPVKRDLAFI 723 (805)
Q Consensus 681 ~~~v~~~EI~ld~L~~~~~~~~~~~~~~~---~s~fP~v~RDls~i 723 (805)
+.++++|-+-+|.|............... .+....+.+|++=.
T Consensus 320 dy~g~AfGlGlERLAML~ygI~DIR~Ly~p~~~~~~~~sD~~~~~~ 365 (534)
T 2du3_A 320 PYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIARE 365 (534)
T ss_dssp CSCEEEEEEEHHHHHHHHTTCSCHHHHHCTTTTTCCCCCHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 9877998652889999871996688751776661002667999850
No 27
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.98 E-value=4.3e-11 Score=96.40 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=10.5
Q ss_pred ECCCCHHHHHHCCCCCHHHHH
Q ss_conf 004311333311345878999
Q gi|254780316|r 405 VFMNSEVKRLSGIDVPIEDSL 425 (805)
Q Consensus 405 ~l~~~~i~~ilG~~i~~~ei~ 425 (805)
..+-.+..+=+|--+...++.
T Consensus 339 ~~~G~KMSKS~GNvIdp~dli 359 (722)
T 1rqg_A 339 TLEGKKFSTSRNWAIWVHEFL 359 (722)
T ss_dssp EETTEECBTTTTBSCBHHHHT
T ss_pred EECCCEEECCCCCCCCHHHHH
T ss_conf 616854110378737889987
No 28
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptide; beta barrel, OB fold, homodimer, protein secretion; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=98.96 E-value=1e-09 Score=86.68 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred CEEEEEEEEEEECCCCC-CC-EEEEECCCC-CEEEEECCCC-CCC----CCCEEEEECCCCEECCCCEEEEEEHHCCCCC
Q ss_conf 74899999975657998-70-899975999-5798975483-455----8978989668779258983983312058650
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CA-ILRIDTGKH-QEIQVVCGAP-NVR----VGLLGVWAPPGSCIPENNMIVNVRKIRGIES 114 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~-v~~Vd~g~~-~~~~IvcgA~-Nv~----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S 114 (805)
.+.||+|+++++||+|| +. ..+||+|.. ..+|||+|-. +.. .|.+|++.. | +|++||||+.|
T Consensus 32 DiRVG~I~~ve~~p~adKll~~l~vd~G~~~~~r~ivsgl~~~y~~EeLvGk~Vv~v~-------N---LkP~ki~G~~S 101 (131)
T 2q2h_A 32 DIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVV-------N---FPPRQIGPFRS 101 (131)
T ss_dssp CEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEEC-------C---SCCEEETTEEE
T ss_pred EEEEEEEEEEEECCCHHHEEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCEEEEEE-------C---CCCCEECCEEC
T ss_conf 1799999998988673330325787526765369985221001598896699699998-------7---88753887504
Q ss_pred CCHHHHHHHCCCCCCCCCEEEE--CCCCCCCCCH
Q ss_conf 5454118876998547750781--6888888455
Q gi|254780316|r 115 TGMMCSEKELMLSDDSASIMEL--PIDAPVGGRL 146 (805)
Q Consensus 115 ~GMlCS~~ELgl~~~~~gI~~l--~~~~~~G~~~ 146 (805)
+|||- +-++++..+..| +.++++|+.+
T Consensus 102 egMiL-----~a~~~~~~~~ll~p~~~v~~G~rI 130 (131)
T 2q2h_A 102 EVLTL-----GFADANGDIVLAAVERPVPNGEKM 130 (131)
T ss_dssp CCEEC-----EEECTTSCEEEEEESSCCCTTCBC
T ss_pred CEEEE-----EEECCCCCEEEECCCCCCCCCCCC
T ss_conf 56999-----898799949996689999798805
No 29
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretion; 1.55A {Agrobacterium tumefaciens str}
Probab=98.89 E-value=1.8e-09 Score=84.92 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=65.7
Q ss_pred CEEEEEEEEEEECCCCC-CCE-EEEECCCC-CEEEEECCCCC-CC----CCCEEEEECCCCEECCCCEEEEEEHHCCCCC
Q ss_conf 74899999975657998-708-99975999-57989754834-55----8978989668779258983983312058650
Q gi|254780316|r 43 PFTIVKVLSVERNPDLD-CAI-LRIDTGKH-QEIQVVCGAPN-VR----VGLLGVWAPPGSCIPENNMIVNVRKIRGIES 114 (805)
Q Consensus 43 ~vvvg~v~~~~~hP~ad-l~v-~~Vd~g~~-~~~~IvcgA~N-v~----~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S 114 (805)
.+.||+|+++++||+|| +.+ .+||+|+. ..+||++|-.. +. .|.+|++.. | +|++|+||+.|
T Consensus 17 DiRVG~I~~~~~~p~adK~l~~l~vd~G~~~~~r~i~sgi~~~y~~eeLvGk~vvvv~-------N---LkP~ki~G~~S 86 (116)
T 2q2i_A 17 DIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVV-------N---FPPRQIGPFRS 86 (116)
T ss_dssp CEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEEC-------C---SCCEEETTEEE
T ss_pred EEEEEEEEEEEECCCHHHEEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCEEEEEE-------C---CCCCEECCCCC
T ss_conf 1899999999988780110447888626775469997430001698897799799999-------5---88862887505
Q ss_pred CCHHHHHHHCCCCCCCCC-EEEECCCCCCCCCH
Q ss_conf 545411887699854775-07816888888455
Q gi|254780316|r 115 TGMMCSEKELMLSDDSAS-IMELPIDAPVGGRL 146 (805)
Q Consensus 115 ~GMlCS~~ELgl~~~~~g-I~~l~~~~~~G~~~ 146 (805)
+||+.++. .+++.. ++..+.++++|+.+
T Consensus 87 egMiL~a~----~~~~~~~ll~p~~~~~~Gsri 115 (116)
T 2q2i_A 87 EVLTLGFA----DANGDIVLAAVERPVPNGEKM 115 (116)
T ss_dssp CCEECEEE----CTTSCEEEEEESSCCCTTCBC
T ss_pred CEEEEEEE----CCCCCEEEECCCCCCCCCCCC
T ss_conf 57999998----899959996589999798804
No 30
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.80 E-value=1.8e-07 Score=70.74 Aligned_cols=193 Identities=14% Similarity=0.134 Sum_probs=127.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHH-HHHHHC-CCC--CCCCCCCCCCCCHHHCHHHHHHHH
Q ss_conf 76789988954678988787787740232100482576-5520-000000-024--677643210151221106776432
Q gi|254780316|r 484 DKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQS-VLFG-GGQREL-EIL--NPISADMSNMRTSLLPGLLKATGR 558 (805)
Q Consensus 484 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~-~~~~-~~~~~i-~l~--NPlS~e~s~lR~SLlp~LL~~~~~ 558 (805)
..+...+.....+++++++.++||.|+...-..+..++ +.++ +.+.+- ... -.+ ++..+|||..-|...+.+..
T Consensus 48 ~~G~~HPl~~~~~~I~~if~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi-~~~~lLRtHTS~~q~r~l~~ 126 (294)
T 2rhq_A 48 SIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI-TDEILMRTHTSPVQARTMEK 126 (294)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS-SSSEEECSSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEE-ECCCCCCCCCHHHHHHHHHH
T ss_conf 89983859999999999997789716458841043057663488998302040451885-03520377680778999985
Q ss_pred HCCCCCCHHHHHHHCCCCCCCCCCCCC----EEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 101586113454302444477754431----0002210354310124620234544333314688875311111110145
Q gi|254780316|r 559 NVDRAIADFAIFEVSHVYENDTPEGQK----YMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVS 634 (805)
Q Consensus 559 N~~r~~~~i~lFEiG~Vf~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~ 634 (805)
. + +.+.+++|.+|+||+++.....- +.+.|+. -....++-++|+.++.++..++.
T Consensus 127 ~-~-~~~p~~~~~~G~VyRrD~iDatH~p~FhQ~Eg~~-------------------v~~~~~~~~Lk~~l~~f~~~~f~ 185 (294)
T 2rhq_A 127 R-N-GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLV-------------------VDKNIKMSDLKGTLELVAKKLFG 185 (294)
T ss_dssp T-T-TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEE-------------------EESSCCHHHHHHHHHHHHHHHHC
T ss_pred H-C-CCCCEEEEECCCEEECCCCCHHHCCEEEEEEEEE-------------------ECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 1-5-6898389846847726878734422222301599-------------------64787776644378899998706
Q ss_pred -CCCEEEECCCCCCCCCCCEEEEEE------------CCE-EEEEEEEEECHHHHHHCCCC---CCEEEEEEEHHHHHHH
Q ss_conf -333033058865678981699998------------792-99999854778999966879---9789999878762354
Q gi|254780316|r 635 -LDSLRFESGAPSWYHPGRSGIIKT------------SAE-IVLGYFGEFHPNILDFFGLS---NPICGFEVYLDSIPIS 697 (805)
Q Consensus 635 -~~~~~~~~~~~~~~hPgrsa~I~~------------~gk-~iiG~iG~ihP~i~~~~~i~---~~v~~~EI~ld~L~~~ 697 (805)
...+++.++-.|+..|+...++.. +++ .-+|-+|.+||+++++.++. .+.++|-+-+|.|...
T Consensus 186 ~~~~~r~rpsyFPfTePs~Evdv~~~~~~g~~~~v~~~~~WlEi~G~Gmv~P~VL~~~Gid~~~~~G~AfGlGlERlAMl 265 (294)
T 2rhq_A 186 ADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGPDRIAML 265 (294)
T ss_dssp TTCCEEEEECCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEECHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 77458974465854588622677762048987414058874688630342789999729996778799986338899999
Q ss_pred H
Q ss_conf 5
Q gi|254780316|r 698 Q 698 (805)
Q Consensus 698 ~ 698 (805)
.
T Consensus 266 ~ 266 (294)
T 2rhq_A 266 K 266 (294)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 31
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.53 E-value=5.2e-07 Score=67.43 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=123.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHH-HHH-------HHCCC-------CCCCC---CCCCCC
Q ss_conf 67899889546789887877877402321004825765--520-000-------00002-------46776---432101
Q gi|254780316|r 485 KRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV--LFG-GGQ-------RELEI-------LNPIS---ADMSNM 544 (805)
Q Consensus 485 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~--~~~-~~~-------~~i~l-------~NPlS---~e~s~l 544 (805)
.+...+.....+.+++++.++||.++-. +-+..+..+ .++ +.+ +..-| .+|.+ ....+|
T Consensus 97 ~G~~HPit~v~~eI~dIF~~mGF~v~~G-peIE~d~~NFdaLn~P~dHPARd~~DTFyl~~~~~~~~~~~~~~~~~~~lL 175 (350)
T 1b7y_A 97 SGGLHPITLMERELVEIFRALGYQAVEG-PEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLL 175 (350)
T ss_dssp CCBCCHHHHHHHHHHHHHHTTTCEECCC-CSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEECCC-CCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 7774879999999999997369445038-753556666887679975510335643897055534578752011103150
Q ss_pred CCHHHCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 51221106776432101586113454302444477754431000221035431012462023454433331468887531
Q gi|254780316|r 545 RTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKAD 624 (805)
Q Consensus 545 R~SLlp~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~ 624 (805)
||.--|--.+.... +.+.+++|=.|+||+++..... +.....+...+ . -...++|.++||.
T Consensus 176 RTHTS~~q~r~m~~----~~pp~r~i~~GrVyR~d~~D~t-H~p~FhQ~Egl-------~-------vd~~it~~~Lk~~ 236 (350)
T 1b7y_A 176 RTHTSPMQVRYMVA----HTPPFRIVVPGRVFRFEQTDAT-HEAVFHQLEGL-------V-------VGEGIAMAHLKGA 236 (350)
T ss_dssp CSSSTHHHHHHHHH----CCSSEEEEEEEEEECCCCCCSS-CCSEEEEEEEE-------E-------EETTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHC----CCCCEEEEECCCCCCCCCCCCC-CCCCCEEEEEE-------E-------CCCCCCHHHHHHH
T ss_conf 44686889999862----4998169836765468998875-58754688999-------8-------1300227988999
Q ss_pred HHHHHHHCCC-CCCEEEECCCCCCCCCCCEEEEEE--CCE-EEEEEEEEECHHHHHHCCCC------------CCEEEEE
Q ss_conf 1111110145-333033058865678981699998--792-99999854778999966879------------9789999
Q gi|254780316|r 625 ALSVIEPFVS-LDSLRFESGAPSWYHPGRSGIIKT--SAE-IVLGYFGEFHPNILDFFGLS------------NPICGFE 688 (805)
Q Consensus 625 v~~ll~~l~~-~~~~~~~~~~~~~~hPgrsa~I~~--~gk-~iiG~iG~ihP~i~~~~~i~------------~~v~~~E 688 (805)
++.++..++. ...+++.++-.|+-.|+--.+++. +|+ .-+|-+|.+||+|++..++. ...|+|-
T Consensus 237 l~~~~~~~f~~~~~~R~rp~yFPfTePs~Evdi~~~~~~~WiEi~G~Gmv~p~vl~~~g~~~~~~g~~~~~~~~~g~AfG 316 (350)
T 1b7y_A 237 IYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFG 316 (350)
T ss_dssp HHHHHHHHSCSSCCEEEEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTCEEEEEE
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCHHHCCCCCCCCCCEEEEEE
T ss_conf 99999974189864875788789888873499996879956898056377789997558976651788545667599986
Q ss_pred EEHHHHHHHH
Q ss_conf 8787623545
Q gi|254780316|r 689 VYLDSIPISQ 698 (805)
Q Consensus 689 I~ld~L~~~~ 698 (805)
+-+|.|....
T Consensus 317 ~GleRlaMl~ 326 (350)
T 1b7y_A 317 LGVERLAMLR 326 (350)
T ss_dssp EEHHHHHHHH
T ss_pred ECHHHHHHHH
T ss_conf 4388999997
No 32
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.53 E-value=5.6e-07 Score=67.19 Aligned_cols=192 Identities=15% Similarity=0.113 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHH-CCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCH
Q ss_conf 988954678988787787740232100482576552000-000-002467764321015122110677643210158611
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGG-QRE-LEILNPISADMSNMRTSLLPGLLKATGRNVDRAIAD 566 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~-i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~ 566 (805)
.......+.+|+.+...||.|+.|-.+.+.+.....+.. ..+ -...+... +.-+||+.+-|++....+...+.....
T Consensus 71 ~~~~~l~~~ir~~~~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lrp~~~p~~~~~~~~~~~~~~~p 149 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLD-GKKCLRPMLAPNLYTLWRELERLWDKP 149 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEE-TTEEECSCSHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECC-CCEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 0999999999999998879899875265221553457654433022047637-420134357717889999863014798
Q ss_pred HHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 34543024444777544310002210354310124620234544333314688875311111110145333033058865
Q gi|254780316|r 567 FAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPS 646 (805)
Q Consensus 567 i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~ 646 (805)
+|+|++|+||+.+..... +.....+.+ ....+ ......+-.+.+.+..+++.++.. ++++. ..+
T Consensus 150 ~r~~~ig~vfR~E~~~~~-h~~eFtQ~e---~~~~~---------~~~~~~~~~l~~l~~~~l~~~g~~-~~~~~--~~~ 213 (288)
T 3dsq_A 150 IRIFEIGTCYRKESQGAQ-HLNEFTMLN---LTELG---------TPLEERHQRLEDMARWVLEAAGIR-EFELV--TES 213 (288)
T ss_dssp EEEEEEEEEECSCCSSSC-CCSEEEEEE---EEEET---------CCGGGHHHHHHHHHHHHHHHHTCC-CCEEE--ECC
T ss_pred EEEEEECEEECCCCCCCC-CCCCEEECC---EEEEC---------CCHHHHHHHHHHHHHHHHHHCCCC-CCEEE--ECC
T ss_conf 489996625556868888-678277731---58986---------988999999999999999985997-78799--704
Q ss_pred CCCCCCEEEEEECCEEEEEEEEEECHHHHH-HCCCCCCEEEEEEEHHHHHHHHH
Q ss_conf 678981699998792999998547789999-66879978999987876235452
Q gi|254780316|r 647 WYHPGRSGIIKTSAEIVLGYFGEFHPNILD-FFGLSNPICGFEVYLDSIPISQK 699 (805)
Q Consensus 647 ~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~-~~~i~~~v~~~EI~ld~L~~~~~ 699 (805)
...+|.+..+..+.-. +| +|.+||.++. .+++..+++++-+-++.+.....
T Consensus 214 ~~~~~~~~~~~~~~~E-l~-~~~~~~~~~~~~~~~~~~~~~~g~gierlam~~~ 265 (288)
T 3dsq_A 214 SVVYGDTVDVMKGDLE-LA-SGAMGPHFLDEKWEIFDPWVGLGFGLERLLMIRE 265 (288)
T ss_dssp CCSSCCCEEEEETTEE-EE-EEEEESCTTTTTTTCCSCEEEEEEEHHHHHHHHH
T ss_pred CCCCCEEEECCCCEEE-EE-CCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHC
T ss_conf 7777307861896688-60-6875899998658999987887357999999870
No 33
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.24 E-value=0.00012 Score=50.70 Aligned_cols=213 Identities=10% Similarity=0.053 Sum_probs=123.5
Q ss_pred CEEEECCCCCCCEEEEEECC-CCCCHHHHHHHCCC--CCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 00000102233326886235-54311455420112--4543200002567631001113553120136726999971578
Q gi|254780316|r 263 PSHVFDASRISDVLTVRRAC-SGEKILALDNQEYD--LSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWD 339 (805)
Q Consensus 263 PlHafD~dki~~~i~vr~a~-~~E~~~~Ld~~e~~--L~~~~lvI~d~~~~ialaGImGg~~s~v~~~T~~illEsA~F~ 339 (805)
-+..||++++..++.+...+ .+..|..|+..+.. ++.......+.+....++||||+..+.|..++++.+++.|
T Consensus 158 dItnyv~~~~gqPlhy~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~vi~d~~~~vl~la--- 234 (589)
T 3l4g_B 158 AIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMP--- 234 (589)
T ss_dssp EEEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEET---
T ss_pred EEHHEEHHHCCCCEEEEEECCCCEEEEECCCCCEEEECCCEEEEECCCCHHHHHCCCCCCCCEEEEECCCCEEEEEC---
T ss_conf 32114686538987999977997489987887247603440676046324431121103675048988896789856---
Q ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC-CCCC-CEECCCCHHHHHHCC
Q ss_conf 78887788761654015544134553013588999888752123345556525874135-5431-000043113333113
Q gi|254780316|r 340 PINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNIT-YKPR-KIVFMNSEVKRLSGI 417 (805)
Q Consensus 340 p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~~~~~~~~~~~-~~~~-~I~l~~~~i~~ilG~ 417 (805)
..|....++....|.+.+++++|.||.. ..++...+.....--........... ..+. ........-. --+
T Consensus 235 -giigg~~s~v~~~T~~i~iE~a~~d~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 307 (589)
T 3l4g_B 235 -PIINGDHSRITVNTRNIFIECTGTDFTK----AKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAY--RKE 307 (589)
T ss_dssp -TTEEBSTTCCCTTCCCEEEEEEESCHHH----HHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCC--EEE
T ss_pred -CCCCCCCEEECCCCHHEEEHHCCCHHHH----HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC--CEE
T ss_conf -4336766166565301011201420788----999887899999986353433110368862122245776664--203
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC-CC-C-CCCCCCCCCCCCCCCHHHHH
Q ss_conf 458789999999840222103456236640345433440256767676535233-46-6-76554434576789988954
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ-IK-S-EPLPLTQVEDKRNLSLQQSR 494 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdn-Ip-~-~~l~~~~~~~~~~~~~~~~~ 494 (805)
.++.+.+.++ ||.+ .+.+-|.++.+-.||.- .. . ..+....+..+.+.....
T Consensus 308 ~~~~~~i~~~---lG~~--------------------i~~~~i~~iL~~Lgf~~~~~~~~~~~~v~vPs~R~DI~~~~-- 362 (589)
T 3l4g_B 308 MVRADLINKK---VGIR--------------------ETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHAC-- 362 (589)
T ss_dssp EEEHHHHHHH---HTCC--------------------CCHHHHHHHHHHTTCEEEECSSSSEEEEEECSSCTTCCSHH--
T ss_pred ECCHHHHHHC---CCCC--------------------CCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCC--
T ss_conf 2489995230---3872--------------------38678899998748805860468757624887556458754--
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 67898878778774023
Q gi|254780316|r 495 TRYVKRVLASRAMMEVV 511 (805)
Q Consensus 495 ~~~ir~~L~~~Gf~Ev~ 511 (805)
+-+-+.+...||..+-
T Consensus 363 -DliEEIaRiyGydnI~ 378 (589)
T 3l4g_B 363 -DIVEDAAIAYGYNNIQ 378 (589)
T ss_dssp -HHHHHHHHHHCGGGSC
T ss_pred -HHHHHHHHHHHHCCCC
T ss_conf -1788888670030266
No 34
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3}
Probab=97.07 E-value=3.1e-05 Score=54.85 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=45.5
Q ss_pred CEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC----CC-CCEEEEC-CCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 000043113333113458789999999840222103----45-6236640-34543344025676767653523
Q gi|254780316|r 403 KIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGE----YD-KFEVSVP-SWRQDVEEKADLVEEILRIYGVD 470 (805)
Q Consensus 403 ~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~----~~-~~~V~vP-s~R~DI~~e~DLiEEIaRiyGYd 470 (805)
+|.+..+.+.+++|..++.+++.+.|..+|++++.- ++ .+++.+| +-|.|+..-.=|+-|++-++|..
T Consensus 3 ~i~~~~~~L~~~lg~~~~~e~~~~~l~~~G~ev~~~~~~~~~~~~eid~t~pNR~D~lS~~GiARel~a~~~~~ 76 (348)
T 2cxi_A 3 KFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWEENGKVYFKLDSKDTNRPDLWSAEGVARQIKWALGIE 76 (348)
T ss_dssp EEEEEHHHHHHHHTSCCCHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECCTTCGGGSSHHHHHHHHHHHTTSS
T ss_pred EEEECHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89973999999878999989999877876971135557777189984799998288868999999999976888
No 35
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, cytoplasm, ligase, nucleotide-binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=96.39 E-value=0.0021 Score=41.90 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=55.9
Q ss_pred EEECCCCCCCEEEEEECCCCCCHHHHHHH-CCC-------------CCCCCEEEECCC-CCCCCHHHCCCCCCCCCCCCC
Q ss_conf 00010223332688623554311455420-112-------------454320000256-763100111355312013672
Q gi|254780316|r 265 HVFDASRISDVLTVRRACSGEKILALDNQ-EYD-------------LSPDNVVIASDG-RIQSIAGIIGGKHAGCDDNTT 329 (805)
Q Consensus 265 HafD~dki~~~i~vr~a~~~E~~~~Ld~~-e~~-------------L~~~~lvI~d~~-~~ialaGImGg~~s~v~~~T~ 329 (805)
-.||+|++..++.||.-+.|+.|..+... ..+ .-....|++|++ .++.++|+--++...++++|+
T Consensus 43 ~~lD~d~i~~pL~vR~r~~GDr~~p~G~~g~Kklk~~~id~kip~~~R~~~pll~~~~~~IlWv~G~r~s~~~~i~~~tk 122 (142)
T 3hj7_A 43 FVVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIPRMERDRWPIVEDADGRILWVPGLKKSAFEAQNRGQA 122 (142)
T ss_dssp EEECGGGSCSSEEEECCCTTCEEEBSTTCCEEEHHHHHHHTTCCHHHHTTCCEEECTTCCEEEETTTEEBTTSCCCSCCS
T ss_pred EEECHHHCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCHHHCCCEEEEEECCCCEEEEECCCCCCEECCCCCCC
T ss_conf 99748998697499687999999889999860089999785999799892699993899699994711063041798986
Q ss_pred EEEEE
Q ss_conf 69999
Q gi|254780316|r 330 DVLVE 334 (805)
Q Consensus 330 ~illE 334 (805)
+++.=
T Consensus 123 ~~l~l 127 (142)
T 3hj7_A 123 RYILL 127 (142)
T ss_dssp CEEEE
T ss_pred EEEEE
T ss_conf 79999
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=95.40 E-value=0.0069 Score=38.14 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=56.1
Q ss_pred HHHHCCCCCCEEEECCC--CCCCCCCCEEEEEECC--EEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCC
Q ss_conf 11101453330330588--6567898169999879--2999998547789999668799789999878762354520245
Q gi|254780316|r 628 VIEPFVSLDSLRFESGA--PSWYHPGRSGIIKTSA--EIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTK 703 (805)
Q Consensus 628 ll~~l~~~~~~~~~~~~--~~~~hPgrsa~I~~~g--k~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~ 703 (805)
+++.++....+.+...- .--|+.|-..+++..+ ..+ +-=|.-+ .+.+.|+-..|.++|-+.++.|........
T Consensus 255 ~l~~~~~~~~i~~Dl~lvrgl~YYtG~vFe~~~~~~g~~I-~~GGRYD-~L~~~fg~~~pAvGfai~ld~l~~~l~~~~- 331 (400)
T 3od1_A 255 VLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLGVPL-CSGGRYD-ELLSKFHRPAQATGFGVRIDLLVEALNGEI- 331 (400)
T ss_dssp HHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCSSEE-EEEEECT-THHHHTTCCCCEEEEEEEHHHHHHHHCC---
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EECCCHH-HHHHHCCCCCCEEEEEEEHHHHHHHHHHCC-
T ss_conf 9987498212233723367867256705999947978857-7353447-889961999877999988999999865125-
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCC--HHHHHHHHHHCC
Q ss_conf 66313689888720018999668879--999999997111
Q gi|254780316|r 704 TKKVVHLSSLHPVKRDLAFIVDQHIP--AGTLVNIIKNVD 741 (805)
Q Consensus 704 ~~~~~~~s~fP~v~RDls~iv~~~v~--~~~I~~~i~~~~ 741 (805)
.+....++-+.++.+.. +-++.+.+|+.|
T Consensus 332 ---------~~~~~~~~~v~~~~~~~~~a~~~a~~LR~~G 362 (400)
T 3od1_A 332 ---------ISNGHEQTCILFSNERRFEAIELARKKRANG 362 (400)
T ss_dssp -------------CCCEEEEECGGGHHHHHHHHHHHHTTT
T ss_pred ---------CCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf ---------7877885999989188999999999999889
No 37
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.99 E-value=0.035 Score=33.20 Aligned_cols=57 Identities=18% Similarity=0.011 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-CCCEE-----EECCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 134587899999998402221034-56236-----64034543344025676767653523346
Q gi|254780316|r 416 GIDVPIEDSLRILERLGFSVIGEY-DKFEV-----SVPSWRQDVEEKADLVEEILRIYGVDQIK 473 (805)
Q Consensus 416 G~~i~~~ei~~iL~~Lgf~v~~~~-~~~~V-----~vPs~R~DI~~e~DLiEEIaRiyGYdnIp 473 (805)
|.+. ++.+..+|-+|--.-...+ .+... .++.+|+-+...-+-|++.++-+|..-+.
T Consensus 126 aHh~-dD~~ET~l~~l~rg~~~~gl~~~~~~~~~~~~~~iRPll~~~k~ei~~y~~~~~l~~~~ 188 (464)
T 3a2k_A 126 GHHG-DDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSPRC 188 (464)
T ss_dssp CCCH-HHHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHHHHHTCCSSCS
T ss_pred EEEC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4204-75899999875431001233455321333456577899975799999999984898666
No 38
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural genomics; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=93.84 E-value=0.016 Score=35.60 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=18.8
Q ss_pred EEEEEECHHHHHHCCCC--CCEEEEEEEHHHHHHHHH
Q ss_conf 99854778999966879--978999987876235452
Q gi|254780316|r 665 GYFGEFHPNILDFFGLS--NPICGFEVYLDSIPISQK 699 (805)
Q Consensus 665 G~iG~ihP~i~~~~~i~--~~v~~~EI~ld~L~~~~~ 699 (805)
+-=|.-+-.+ ..|+=+ .|.++|-+.++.+.....
T Consensus 315 ~~GGRYD~Li-~~~~~~~~~pAvGfai~~er~~~~l~ 350 (456)
T 3lc0_A 315 CGGGRYDNLL-TTYGSPTPIPCAGFGFGDCVIVELLQ 350 (456)
T ss_dssp EEEEECSSHH-HHTTCSSCCCEEEEEEESSHHHHHHH
T ss_pred ECCCCCHHHH-HHHCCCCCCCEEEEEEHHHHHHHHHH
T ss_conf 0587410368-88568777772378866999999999
No 39
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=93.71 E-value=0.021 Score=34.79 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=25.9
Q ss_pred CCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC----CHHHHHHHHHHCC
Q ss_conf 997899998787623545202456631368988872001899966887----9999999997111
Q gi|254780316|r 681 SNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHI----PAGTLVNIIKNVD 741 (805)
Q Consensus 681 ~~~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v~RDls~iv~~~v----~~~~I~~~i~~~~ 741 (805)
..|..+|-+.++.+......... .+..+....|+.+ ++-+- .+-+|.+.++++|
T Consensus 341 ~~~a~G~~~~ierl~~~L~~~~~------~~~~~~~~~~v~v-~~~~~~~~~~a~~i~~~Lr~~g 398 (465)
T 3net_A 341 KMPGVGISIGLTRLISRLLKAGI------LNTLPPTPAQVVV-VNMQDELMPTYLKVSQQLRQAG 398 (465)
T ss_dssp CCCEEEEEEEHHHHHHHHHHTTS------SCCCCSCSCCEEE-CCSCGGGHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHCCC------CCCCCCCCCEEEE-EECCHHHHHHHHHHHHHHHHCC
T ss_conf 65655742319999999996176------6666667874999-9789899999999999999889
No 40
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=92.42 E-value=0.029 Score=33.69 Aligned_cols=90 Identities=6% Similarity=0.028 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-HHH-----HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 8895467898878778774023210048257655-200-----0000002467764321015122110677643210158
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVL-FGG-----GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~-~~~-----~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
..+...+.+++.+...||.|+.|-.|-..+.... .+. .++..++.+. +.+.=.||+.+.+++...+..|..+.
T Consensus 18 ~~~~i~~~i~~~~~~~Gy~~V~tP~ie~~dl~~~~~g~~~~~~~~~mf~~~D~-~g~~~~LRpd~t~~~~r~~~~~~~~s 96 (420)
T 1qe0_A 18 KWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQG 96 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHCCCEECC-CCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99999999999999869979999520408774255675211157650432669-99888327776849999999856640
Q ss_pred --CCHHHHHHHCCCCCCCC
Q ss_conf --61134543024444777
Q gi|254780316|r 564 --IADFAIFEVSHVYENDT 580 (805)
Q Consensus 564 --~~~i~lFEiG~Vf~~~~ 580 (805)
...+|+|++|+||+...
T Consensus 97 ~~~lP~r~~~~g~v~R~e~ 115 (420)
T 1qe0_A 97 NPNQPIKLYYNGPMFRYER 115 (420)
T ss_dssp CSSCSEEEEEEEEEECC--
T ss_pred CCCCCEEEEEECCEEECCC
T ss_conf 6778758998864787046
No 41
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=92.12 E-value=0.066 Score=31.22 Aligned_cols=86 Identities=7% Similarity=0.026 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-HH--HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCCHHH
Q ss_conf 95467898878778774023210048257655-20--0000000246776432101512211067764321015861134
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVL-FG--GGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFA 568 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~-~~--~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~~~i~ 568 (805)
+...+.+++.....||.||.|-.|-..+.... .+ ..+...++..+ +.+.-.||+-+.+++++....|..+ ...+|
T Consensus 24 ~~i~~~i~~~~~~~Gy~eV~tP~ie~~dl~~~~~g~~~~~~m~~~~d~-~g~~l~Lrpd~t~~~~r~~~~~~~~-~~p~k 101 (434)
T 1wu7_A 24 KFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDL-QRPLR 101 (434)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTC-CSSEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCHHHHHHEEEECC-CCCEECCCCCCCHHHHHHHHHHHCC-CCCEE
T ss_conf 999999999999859979988731627650657875023421144458-9978513766799999999764126-78616
Q ss_pred HHHHCCCCCCC
Q ss_conf 54302444477
Q gi|254780316|r 569 IFEVSHVYEND 579 (805)
Q Consensus 569 lFEiG~Vf~~~ 579 (805)
+|++|.||...
T Consensus 102 ~~~~~~v~r~~ 112 (434)
T 1wu7_A 102 WYSFPKVWRYE 112 (434)
T ss_dssp EEECCEEECCC
T ss_pred EECCCCEEEEC
T ss_conf 74138745404
No 42
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=90.69 E-value=0.12 Score=29.39 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCCCCEEEEEECCE-EEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHH
Q ss_conf 78981699998792-999998547789999668799789999878762354
Q gi|254780316|r 648 YHPGRSGIIKTSAE-IVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPIS 697 (805)
Q Consensus 648 ~hPgrsa~I~~~gk-~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~ 697 (805)
|+.|-..+++..+. ..++-=|.-+ .+.+.|+-+.|.++|-+++|.|...
T Consensus 284 YYtG~vFe~~~~~~~~~i~~GGRYD-~L~~~fg~~~pAvGfai~ld~l~~~ 333 (344)
T 1z7m_A 284 YYTDLMFKAYSSAANQPILSGGRYD-QLLSNFQEEAFAIGFCCHMDTILKA 333 (344)
T ss_dssp TCCSEEEEEEETTEEEEEEEEEECH-HHHHTSSSCCCCEEEEEEHHHHHHH
T ss_pred CCCCEEEEEEECCCCCEEEECCCHH-HHHHHHCCCCCEEEEEEEHHHHHHH
T ss_conf 7798089999889998378780287-8999619998779999679999999
No 43
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=90.52 E-value=0.14 Score=28.86 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=29.3
Q ss_pred CCCCCEEEEEECC----EEEEEEEEEECHHHHHHC-CCCCCEEEEEEEHHHHHHHHHCCC
Q ss_conf 7898169999879----299999854778999966-879978999987876235452024
Q gi|254780316|r 648 YHPGRSGIIKTSA----EIVLGYFGEFHPNILDFF-GLSNPICGFEVYLDSIPISQKKRT 702 (805)
Q Consensus 648 ~hPgrsa~I~~~g----k~iiG~iG~ihP~i~~~~-~i~~~v~~~EI~ld~L~~~~~~~~ 702 (805)
|+.|.-.+.+... ..+ +--|.- ..+...| +-..+.++|-+.++.+........
T Consensus 262 yy~g~if~~~~~~~~~~~~i-~~GGrY-d~Li~~f~g~~~~avGfs~~~~~i~~~~~~~~ 319 (423)
T 1htt_A 262 YYNRTVFEWVTNSLGSQGTV-CAGGRY-DGLVEQLGGRATPAVGFAMGLERLVLLVQAVN 319 (423)
T ss_dssp TCCSEEEEEECC----CCEE-EEEEEC-TTHHHHTTSCCCCEEEEEEEHHHHHHHHHHHS
T ss_pred CCCCCEEEEEECCCCCCCCE-ECCCCH-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 42386799986687775532-057640-56898736987664464223999999998627
No 44
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=89.47 E-value=0.29 Score=26.60 Aligned_cols=93 Identities=8% Similarity=0.025 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-----HHHHHCCCC-CCCC--CCCCCCCCHHHCHHHHHHHHHC
Q ss_conf 9889546789887877877402321004825765520-----000000024-6776--4321015122110677643210
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG-----GGQRELEIL-NPIS--ADMSNMRTSLLPGLLKATGRNV 560 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~-----~~~~~i~l~-NPlS--~e~s~lR~SLlp~LL~~~~~N~ 560 (805)
...+...+.+|+.+...||.|+.|-.|.+.+....-+ +.++...+. .+-+ .+.=.|||+.-+++......+.
T Consensus 39 ~i~~~ie~~~r~~~~~~G~~ei~tP~l~~~~l~~k~~~h~d~f~~Em~~v~~~g~~~~~~~~~LrPt~e~~~~~~~~~~~ 118 (459)
T 1nj8_A 39 KIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWV 118 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 99999999999999985998998985378899987416724137463788327865557623111799689999998651
Q ss_pred C-CCCCHHHHHHHCCCCCCCCC
Q ss_conf 1-58611345430244447775
Q gi|254780316|r 561 D-RAIADFAIFEVSHVYENDTP 581 (805)
Q Consensus 561 ~-r~~~~i~lFEiG~Vf~~~~~ 581 (805)
+ ++...+++|++|++|+.+.+
T Consensus 119 ~s~rdLPlrl~q~g~~fR~E~~ 140 (459)
T 1nj8_A 119 KVHTDLPIKIYQIVNTFRYETK 140 (459)
T ss_dssp CBTTSCCCCEEEEECCBCCCCS
T ss_pred HCCCCCCEEEEECCCEECCCCC
T ss_conf 3225567189850412555332
No 45
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=88.02 E-value=0.23 Score=27.42 Aligned_cols=149 Identities=11% Similarity=0.069 Sum_probs=84.1
Q ss_pred HHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13333113458-78999999984022210345623664034543344025676767653523346676554434576789
Q gi|254780316|r 410 EVKRLSGIDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNL 488 (805)
Q Consensus 410 ~i~~ilG~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~ 488 (805)
.+.|+-|+.++ .++....|+.+.=--+.+ +|. |-.+-| ++.|+.-.+.- .+.. .+...
T Consensus 213 ~l~riyg~a~~~~~~l~~~~~~~~e~~~rd----------hr~-lg~~~~-------lf~f~~~~~~G--~~~w-lP~G~ 271 (645)
T 1nyr_A 213 MLQRIYGTAFFDKKELKAHLQMLEERKERD----------HRK-IGKELE-------LFTNSQLVGAG--LPLW-LPNGA 271 (645)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHHHHHHTC----------HHH-HHHHTT-------CEEEETTTEEE--EEEE-CHHHH
T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHHCC----------HHH-HHHHCC-------CEECCCCCCCC--EEEE-HHHHH
T ss_conf 037899886189999999999999877455----------666-665225-------47756535896--0773-33289
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCC
Q ss_conf 988954678988787787740232100482576552000----0000024677643210151221106776432101586
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGG----QRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAI 564 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~----~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~ 564 (805)
...+...+.+|+.+...||+|+.|-.|.+.+.-+.-+-. ++.......-..+.=.|||.--|+.......+.+ ..
T Consensus 272 ~i~~~le~~ir~~~~~~Gy~EV~tP~l~~~~Lw~~SGh~~~y~~~m~~~~~~~~~e~~~LrP~~~~~~~~~~~~~~~-Sy 350 (645)
T 1nyr_A 272 TIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH-SY 350 (645)
T ss_dssp HHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC-BG
T ss_pred HHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHCCCCCCEECCCEEEEEECCCCCCEECCCCCCCHHHHHHHHHHC-CC
T ss_conf 99999999999999860854621642146556531566341114202566416664240456564314577775320-34
Q ss_pred C--HHHHHHHCCCCCCCC
Q ss_conf 1--134543024444777
Q gi|254780316|r 565 A--DFAIFEVSHVYENDT 580 (805)
Q Consensus 565 ~--~i~lFEiG~Vf~~~~ 580 (805)
+ .+++||+|++|+.+.
T Consensus 351 rdLPlrl~qig~~fR~E~ 368 (645)
T 1nyr_A 351 RELPIRIAELGTMHRYEA 368 (645)
T ss_dssp GGCCEEEEEEEEEECCCC
T ss_pred CCCCEEEEEEEEEECCCC
T ss_conf 568864245400444665
No 46
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=87.42 E-value=0.19 Score=28.00 Aligned_cols=146 Identities=12% Similarity=0.124 Sum_probs=70.5
Q ss_pred HHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 13333113458-7899999998402221034562366403454334402567676765352334-667655443457678
Q gi|254780316|r 410 EVKRLSGIDVP-IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQI-KSEPLPLTQVEDKRN 487 (805)
Q Consensus 410 ~i~~ilG~~i~-~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnI-p~~~l~~~~~~~~~~ 487 (805)
.+.|+-|+.++ .++....|++|.=--..+ ||. |-.+.| ++-++.. |..+ .. .+..
T Consensus 214 ~l~Riyg~af~~~~~l~~~l~~~eea~~rd----------hr~-lg~~~~-------lf~~~~~~~G~~----~~-lP~G 270 (642)
T 1qf6_A 214 MLQRIYGTAWADKKALNAYLQRLEEAAKRD----------HRK-IGKQLD-------LYHMQEEAPGMV----FW-HNDG 270 (642)
T ss_dssp EEEEEEEEECSSHHHHHHHHHHHHHHHTTC----------HHH-HHHHTT-------CEECCTTSTTCC----EE-CHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----------HHH-HHHHHH-------HHEECCCCCCEE----EE-CCHH
T ss_conf 767677664167566899999999988640----------788-998757-------860336788258----87-7209
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCC
Q ss_conf 998895467898878778774023210048257655200----0000002467764321015122110677643210158
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGG----GQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRA 563 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~----~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~ 563 (805)
....+...+.+|+.+...||+|+.|-.|.+.+.-..-+- .+....... ..+.-.|||+--|+.........+ .
T Consensus 271 ~~i~~~le~~ir~~~~~~Gy~EV~tP~l~~~eLw~~sg~~d~~~e~m~~~~~--~~~~~~L~P~~e~~~~~~~~~~~~-S 347 (642)
T 1qf6_A 271 WTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIFNQGLK-S 347 (642)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--TTEEEEECSSSHHHHHHHHTTSCE-E
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEC--CCCCEEECCCCCCHHHHHHHHCCC-C
T ss_conf 9999999999999999769899862546765677547622222330787622--564256547886179999985012-3
Q ss_pred CC--HHHHHHHCCCCCCCCC
Q ss_conf 61--1345430244447775
Q gi|254780316|r 564 IA--DFAIFEVSHVYENDTP 581 (805)
Q Consensus 564 ~~--~i~lFEiG~Vf~~~~~ 581 (805)
.+ .+++||+|++|+.+.+
T Consensus 348 yrdLPlrlyq~g~~fR~E~~ 367 (642)
T 1qf6_A 348 YRDLPLRMAEFGSCHRNEPS 367 (642)
T ss_dssp GGGCSEEEEEEEEEECCCCG
T ss_pred CCCCCEEEEEECCCCCCCCC
T ss_conf 24478589997233368867
No 47
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=86.81 E-value=0.28 Score=26.73 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-HHH-----HHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHC-CCC
Q ss_conf 895467898878778774023210048257655-200-----0000002467764321015122110677643210-158
Q gi|254780316|r 491 QQSRTRYVKRVLASRAMMEVVNWSFISKEQSVL-FGG-----GQRELEILNPISADMSNMRTSLLPGLLKATGRNV-DRA 563 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~-~~~-----~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~-~r~ 563 (805)
.+...+.+|+.....||.|+.|-.|...+.... .+. .++..++... +.+.=.||+.+.+++......+. ...
T Consensus 20 ~~~l~~~i~~~~~~~Gy~~V~TP~ie~~dl~~~~~~~~~d~~~~~my~~~D~-~g~~l~Lrpd~t~~~~r~~~~~~~~~~ 98 (421)
T 1h4v_B 20 HQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVW 98 (421)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECT-TSCEEEECCCSHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCCCHHHHHCEEEECC-CCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999859979889621509886334686321036645024669-998885257674899999998565404
Q ss_pred CCHHHHHHHCCCCCCC
Q ss_conf 6113454302444477
Q gi|254780316|r 564 IADFAIFEVSHVYEND 579 (805)
Q Consensus 564 ~~~i~lFEiG~Vf~~~ 579 (805)
...+++|++|+||+..
T Consensus 99 ~~p~k~y~~~~v~R~e 114 (421)
T 1h4v_B 99 PQPVRLWMAGPMFRAE 114 (421)
T ss_dssp SSSEEEEEEEEEECCC
T ss_pred CCCEEEEEECCEEECC
T ss_conf 7872699875535316
No 48
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=86.30 E-value=0.37 Score=25.92 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHC----
Q ss_conf 9889546789887877877402321004825765520----00000002467764321015122110677643210----
Q gi|254780316|r 489 SLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNV---- 560 (805)
Q Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~---- 560 (805)
...+...+.+|+.+...||+||.|-.+.+.+.-+.-+ +.++...+. ...+.=+|||..-|+.........
T Consensus 50 ~v~~~ie~~ire~~~~~G~~EV~tP~l~~~eLw~~SGh~d~~~e~Mf~~d--~~~~e~~LrP~~~~~~~~~~~~~~~~~~ 127 (471)
T 3a32_A 50 PIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD--IEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEE--ETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCEECCHHHHHHHCCHHHHCCCCEEEE--CCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 99999999999999986997998980677779877277534212660385--0894797546687015367541241336
Q ss_pred CCCCCHHHHHHHCCCCCCCC
Q ss_conf 15861134543024444777
Q gi|254780316|r 561 DRAIADFAIFEVSHVYENDT 580 (805)
Q Consensus 561 ~r~~~~i~lFEiG~Vf~~~~ 580 (805)
.++.-.+++|++|++|+.+.
T Consensus 128 Syk~LPlrlyqi~~~fR~E~ 147 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEP 147 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCC
T ss_pred CCCCCCEEEEEEECEEEECC
T ss_conf 53358546876404586022
No 49
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=84.72 E-value=0.36 Score=25.96 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=29.3
Q ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCC-----------CCCCCEEEE
Q ss_conf 8999999756579987089997599957989754834-----------558978989
Q gi|254780316|r 45 TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPN-----------VRVGLLGVW 90 (805)
Q Consensus 45 vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~N-----------v~~g~~V~~ 90 (805)
+.|.|..+..|-+ +....+..|.+ .+|||+-..+ ++.|..|-|
T Consensus 21 v~GwV~~~R~~g~--l~Fi~LrD~~g-~iQv~~~~~~~~~~~~~~~~~l~~g~~v~v 74 (438)
T 3nem_A 21 VAGWVWEVKDLGG--IKFLWIRDRDG-IVQITAPKKKVDPELFKLIPKLRSEDVVAV 74 (438)
T ss_dssp EEEEEEEEEEETT--EEEEEEEETTE-EEEEEEETTTSCHHHHHHGGGCCTTCEEEE
T ss_pred EEEEEEEEECCCC--CEEEEEEECCE-EEEEEEECCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 9999881884798--09999995986-399999589799999999828998349999
No 50
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=83.26 E-value=0.68 Score=24.01 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCEEEEEECCEEEEEEEEEEC-HHH----------------------HHH--CCCCCCEEEEEEEHHHHHHHHHCCCCCC
Q ss_conf 816999987929999985477-899----------------------996--6879978999987876235452024566
Q gi|254780316|r 651 GRSGIIKTSAEIVLGYFGEFH-PNI----------------------LDF--FGLSNPICGFEVYLDSIPISQKKRTKTK 705 (805)
Q Consensus 651 grsa~I~~~gk~iiG~iG~ih-P~i----------------------~~~--~~i~~~v~~~EI~ld~L~~~~~~~~~~~ 705 (805)
..+.+++++|..++|---++| |.. ++. ||. -|..+|-|=+|.|...........
T Consensus 471 ~~~fDL~~~G~Ei~~Gs~R~~d~~~q~~~~~~~g~~~~e~~~~~~~yl~a~~yG~-PPhgG~GlG~DRLvm~ltg~~nIR 549 (585)
T 1c0a_A 471 ANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGT-PPHAGLAFGLDRLTMLLTGTDNIR 549 (585)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTC-CCEEEEEEEHHHHHHHHHTCSCGG
T ss_pred EEEEEEECCCEEECCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEHHHHHHHHHCCCCCHH
T ss_conf 6888640288897240101179999999999859995686557999999976699-987627418999999980999576
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 31368988872001899966887999999
Q gi|254780316|r 706 KVVHLSSLHPVKRDLAFIVDQHIPAGTLV 734 (805)
Q Consensus 706 ~~~~~s~fP~v~RDls~iv~~~v~~~~I~ 734 (805)
-..++|+-|+ -.|+-+-.|..++-+++.
T Consensus 550 Dvi~FPRt~~-~~d~~~~~p~~~~~~~l~ 577 (585)
T 1c0a_A 550 DVIAFPKTTA-AACLMTEAPSFANPTALA 577 (585)
T ss_dssp GGSSSCCCTT-SCBTTTTBSCCCCHHHHH
T ss_pred EEECCCCCCC-CCCCCCCCCCCCCHHHHH
T ss_conf 0751798999-776567997978988998
No 51
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=83.05 E-value=2.1 Score=20.58 Aligned_cols=183 Identities=10% Similarity=-0.013 Sum_probs=90.8
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 403454334402567676765352334---66765544345767899889546789887877877402321004825765
Q gi|254780316|r 446 VPSWRQDVEEKADLVEEILRIYGVDQI---KSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV 522 (805)
Q Consensus 446 vPs~R~DI~~e~DLiEEIaRiyGYdnI---p~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~ 522 (805)
+|.+-.....-.||.|+.. +.-|+.- .-.. +..... ......+.+.+...+.+...||.|+.+-.++..+...
T Consensus 131 ~~~~~f~~k~H~eig~~l~-l~Df~~~~kvsGsr--f~~l~g-~~a~Le~ALi~y~ld~~~~~Gy~~v~~P~lv~~~~~~ 206 (425)
T 2dq3_A 131 PRKFDFEPKPHWEIGERLG-ILDFKRGAKLSGSR--FTVIAG-WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILI 206 (425)
T ss_dssp CCCCSSCCCCHHHHHHHTT-CEEHHHHHHHHCSS--CCEEET-HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHH
T ss_pred CCCCCCCCCCHHHHHHHCC-CCCHHHHHCCCCCC--EEEECC-HHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHH
T ss_conf 8999989884999998739-84056664236776--268628-5999999999999999987798774383766899986
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCC--CHHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCC
Q ss_conf 520000000024677643210151221106776432101586--113454302444477754431000221035431012
Q gi|254780316|r 523 LFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAI--ADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEG 600 (805)
Q Consensus 523 ~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~~r~~--~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~ 600 (805)
..+...+.-.=+..+..|--+|.++==++|..... |.-... -.+|++++|++|+.+....-+. ..|+...+.---.
T Consensus 207 gtG~lpkf~e~~y~~~~~~l~Li~TaEv~l~~~~~-~~~~~~~~LP~r~~~~s~cfR~Eags~g~d-~~Gl~RvhqF~kv 284 (425)
T 2dq3_A 207 GTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYR-EEILKEENLPIYLTAYTPCYRREAGAYGKD-IRGIIRQHQFDKV 284 (425)
T ss_dssp HHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGT-TEEEETTTCCEEEEEEEEEECCCCSCCSSS-CSSSSSCSEEEEE
T ss_pred HHCCCCCCHHHHHCCCCCCEEECCCCCCCHHHHHC-CEEECHHHCCCEEEEECCCCCCCCCCCCCC-CCCEEEECCCCCC
T ss_conf 41567424565301268861641445650887733-507417548840345378778665545767-7751543210023
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4620234544333314688875311111110145333
Q gi|254780316|r 601 SGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDS 637 (805)
Q Consensus 601 ~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~ 637 (805)
..-.+... .....-|..+-..++.++..|+....
T Consensus 285 e~~~~~~~---~~s~~~~~~~~~~~~~~~~~L~l~~r 318 (425)
T 2dq3_A 285 ELVKIVHP---DTSYDELEKLVKDAEEVLQLLGLPYR 318 (425)
T ss_dssp EEEEEECG---GGHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEECCC---HHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 24664173---35899999999999999997168708
No 52
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1
Probab=81.22 E-value=0.41 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=24.6
Q ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 8999999756579987089997599957989754834
Q gi|254780316|r 45 TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPN 81 (805)
Q Consensus 45 vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~N 81 (805)
|.|.|.++..|- ++....+..|++ .+||||...+
T Consensus 18 v~G~v~~~R~~g--kl~Fi~lrD~~g-~iQvv~~~~~ 51 (422)
T 1n9w_A 18 LLGFLHWRRDLG--RIQFLLLRDRSG-VVQVVTGGLK 51 (422)
T ss_dssp EEEEEEEEEECS--SEEEEEEEETTE-EEEEEEESCC
T ss_pred EEEEEEEEEECC--CEEEEEEEECCC-CEEEEECCCC
T ss_conf 999999898089--869999994980-0899987662
No 53
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=77.10 E-value=1.4 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHHHHHHHHHC
Q ss_conf 01321039999989998608
Q gi|254780316|r 242 GLRSISALVDITNYVSLDRG 261 (805)
Q Consensus 242 Gir~inniVDitNyvmle~G 261 (805)
|.|-.++|.++.--.|-..|
T Consensus 66 G~~v~~kIe~~ir~~~~~~G 85 (458)
T 2i4l_A 66 GHRVLKKIEQIVREEQNRAG 85 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999869
No 54
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str}
Probab=76.33 E-value=0.63 Score=24.24 Aligned_cols=34 Identities=12% Similarity=-0.134 Sum_probs=24.7
Q ss_pred EEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCC
Q ss_conf 4899999975657998708999759995798975483
Q gi|254780316|r 44 FTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAP 80 (805)
Q Consensus 44 vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~ 80 (805)
.|.|.|..+..+-+ +....+..|.+ .+|+|+-..
T Consensus 20 ~v~Gwv~~~R~~gk--~~Fi~lrD~~g-~iQ~v~~~~ 53 (429)
T 1wyd_A 20 IWAGWVHLLRDLGG--KKFIILRDKTG-LGQVVVDKN 53 (429)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEETTE-EEEEEECTT
T ss_pred EEEEEEEEEECCCC--CEEEEEEECCC-CEEEEEECC
T ss_conf 99999898987898--09999993881-589999489
No 55
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, Pro(Cys)RS, translation, ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=71.60 E-value=0.64 Score=24.19 Aligned_cols=130 Identities=8% Similarity=0.068 Sum_probs=72.5
Q ss_pred EECCCCCCCCCH-HHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 640345433440-2567676765-35233466765544345767899889546789887877877402321004825765
Q gi|254780316|r 445 SVPSWRQDVEEK-ADLVEEILRI-YGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSV 522 (805)
Q Consensus 445 ~vPs~R~DI~~e-~DLiEEIaRi-yGYdnIp~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~ 522 (805)
.+...+-|...| .|+++.---+ |+|+ ++-.+.- .+......+...+.+++.+...|++|+.+-.|++.+...
T Consensus 16 ~~~~~~~~~~~wy~~v~~~a~l~d~~~~-v~G~~~~-----lP~G~~i~~~i~~~~~~~~~~~G~~ev~~P~l~p~~~l~ 89 (518)
T 3ial_A 16 SLTKTRDTFADWFDAIMDAAELVDRRYP-VKGCVVF-----RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLK 89 (518)
T ss_dssp CCCCCTTTHHHHHHHHHHHTTCEETTSS-STTCCEE-----CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCEEE-----CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 5773513668999999996477014899-9801897-----710999999999999999998599799897606789999
Q ss_pred H----H-HHHHHHCCCCCC-C--CCCCCCCCCHHHCHHHHHHHHHCC-CCCCHHHHHHHCCCCCCCC
Q ss_conf 5----2-000000002467-7--643210151221106776432101-5861134543024444777
Q gi|254780316|r 523 L----F-GGGQRELEILNP-I--SADMSNMRTSLLPGLLKATGRNVD-RAIADFAIFEVSHVYENDT 580 (805)
Q Consensus 523 ~----~-~~~~~~i~l~NP-l--S~e~s~lR~SLlp~LL~~~~~N~~-r~~~~i~lFEiG~Vf~~~~ 580 (805)
. + ++.++...+... . .++.=+|||+--|.+....+...+ ++.-.+++|++|++|+.+.
T Consensus 90 k~sgh~e~f~~emf~v~~~~~~~~~e~~~LrPt~e~~~~~~~~~~i~SyrdLPl~i~Q~g~~fR~E~ 156 (518)
T 3ial_A 90 KESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHET 156 (518)
T ss_dssp SSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTC
T ss_pred HHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 8867701026344698448865556617763588799999995445765556814455310101223
No 56
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=71.14 E-value=1.8 Score=21.07 Aligned_cols=19 Identities=0% Similarity=0.153 Sum_probs=8.0
Q ss_pred EECCCCC--CCHHHHHHHHHH
Q ss_conf 8477988--899999999999
Q gi|254780316|r 771 IQPLKDT--FRDDDIRILMDR 789 (805)
Q Consensus 771 fqs~~kT--Ltd~EI~~i~~~ 789 (805)
||..|+- -|-+|-..+-+.
T Consensus 863 FRH~DHKFEWTRaEFq~WA~~ 883 (950)
T 3htx_A 863 FRNHDHKFEWTREQFNQWASK 883 (950)
T ss_dssp CSCSSCSCCBCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHH
T ss_conf 688987887599999999999
No 57
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=69.68 E-value=2.8 Score=19.69 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=18.2
Q ss_pred CEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 78999987876235452024566313689888
Q gi|254780316|r 683 PICGFEVYLDSIPISQKKRTKTKKVVHLSSLH 714 (805)
Q Consensus 683 ~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP 714 (805)
|+.++-|-+|.|..............++|+-|
T Consensus 512 P~gG~glGlDRLvmll~g~~~Irdvi~FPr~~ 543 (548)
T 3i7f_A 512 PHAGCGIGLERITMLYLGIPNIRKVTLFPRDP 543 (548)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBT
T ss_pred CCCEEEEHHHHHHHHHCCCCCHHEEECCCCCC
T ss_conf 86146538999999981898377586168998
No 58
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=69.57 E-value=1.4 Score=21.86 Aligned_cols=38 Identities=5% Similarity=0.032 Sum_probs=27.9
Q ss_pred EEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCC
Q ss_conf 48999999756579987089997599957989754834558
Q gi|254780316|r 44 FTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRV 84 (805)
Q Consensus 44 vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~Nv~~ 84 (805)
.|-|.|.++..|- ++....+..|.+ .+||||...++..
T Consensus 68 ~v~GwV~~~R~~G--kl~Fi~lrD~~g-~iQvv~~~~~~~~ 105 (504)
T 1e1o_A 68 SVAGRMMTRRIMG--KASFVTLQDVGG-RIQLYVARDSLPE 105 (504)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEETTE-EEEEEEETTTSST
T ss_pred EEEEEEEEEECCC--CCEEEEEECCCE-EEEEEEECCCCCH
T ss_conf 9998889898689--939999991984-8999996885828
No 59
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=69.57 E-value=1.4 Score=21.88 Aligned_cols=92 Identities=8% Similarity=-0.035 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH----H-HHHHHHCCCCCCCCCC---CCCCCCHHHCHHHHHHHHH
Q ss_conf 998895467898878778774023210048257655----2-0000000024677643---2101512211067764321
Q gi|254780316|r 488 LSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVL----F-GGGQRELEILNPISAD---MSNMRTSLLPGLLKATGRN 559 (805)
Q Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~----~-~~~~~~i~l~NPlS~e---~s~lR~SLlp~LL~~~~~N 559 (805)
....+...+.+++.+...||+||.+-.|++.+.... + ++.++...+...-.++ .=.|||+-=|.+....+..
T Consensus 44 ~~i~~~i~~~i~~~~~~~G~~ev~~P~li~~~~l~k~sgh~~~f~~emf~v~~~~~~~~~e~~~LrPt~e~~~~~~~~~~ 123 (477)
T 1hc7_A 44 YAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKW 123 (477)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCHHHCCCCEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHCC
T ss_conf 99999999999999998599799896615789999886764131756078851684110243146897668899999623
Q ss_pred CCCCCC--HHHHHHHCCCCCCCC
Q ss_conf 015861--134543024444777
Q gi|254780316|r 560 VDRAIA--DFAIFEVSHVYENDT 580 (805)
Q Consensus 560 ~~r~~~--~i~lFEiG~Vf~~~~ 580 (805)
. |... .++++|+|++|+.+.
T Consensus 124 i-~SyrdLPlrl~q~~~~fR~E~ 145 (477)
T 1hc7_A 124 I-RSWRDLPQLLNQWGNVVRWEM 145 (477)
T ss_dssp C-CBGGGCCEEEEEEEEEECCCS
T ss_pred C-CCCCCCCHHHHHCCCCEECCC
T ss_conf 5-520248888861530100024
No 60
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=69.29 E-value=1.9 Score=20.90 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 998899999987458604211124656874-8999999756579987089997599957989754834
Q gi|254780316|r 15 DVSLEKICDTLTSIGLEVEKVDNREALSPF-TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPN 81 (805)
Q Consensus 15 ~~~~~~l~~~lt~~G~EVe~i~~~~~~~~v-vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~N 81 (805)
+.+..++-+....+.-- | . ..-..| |.|.|.++..|-. .|....+..|.+ .+||||-..+
T Consensus 34 t~s~~~~~~~~~~l~~~-~---~-~~~~~V~v~Gwv~~~R~~gg-kl~Fi~LrD~sg-~iQvv~~~~~ 94 (521)
T 3bju_A 34 DISLTDFIQKYSHLQPG-D---H-LTDITLKVAGRIHAKRASGG-KLIFYDLRGEGV-KLQVMANSRN 94 (521)
T ss_dssp CSCHHHHHHHHTTCCTT-C---B-CSSCCEEEEEEEEEEEESSS-SEEEEEEEETTE-EEEEEEEGGG
T ss_pred CCCHHHHHHHHHCCCCC-C---C-CCCCEEEEEEEEEEEECCCC-CEEEEEEECCCE-EEEEEEECCC
T ss_conf 77099999985047876-5---3-58988999899780777999-389999977988-9999995886
No 61
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=67.68 E-value=3.2 Score=19.26 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC--CCCC--CCCCCCCCCHHHCHHHH--HHHHHCCCCCC
Q ss_conf 954678988787787740232100482576552000000002--4677--64321015122110677--64321015861
Q gi|254780316|r 492 QSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEI--LNPI--SADMSNMRTSLLPGLLK--ATGRNVDRAIA 565 (805)
Q Consensus 492 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l--~NPl--S~e~s~lR~SLlp~LL~--~~~~N~~r~~~ 565 (805)
....+.+|++|...||.||-|=.+++...-. ....+.+. ..|- ....-+|++| |.|-. .++ -+..
T Consensus 40 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~~g---a~~~pf~~~~~~~~~~~~~~~yL~~S--pQl~lq~l~~----~g~~ 110 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATVTD---IHLVPFETRFVGPGHSQGMNLWLMTS--PEYHMKRLLV----AGCG 110 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCCC---TTCCCCEEEECCSTTSCCEEEEECSC--SHHHHHHHHH----TTCC
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCC---CCCCCEEEEECCCCCCCCCCEEECCC--HHHHHHHHHH----CCCC
T ss_conf 9999999999988897898798647889876---45661688723666667857775548--7999999996----7998
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 1345430244447775443100022103543101246202345443333146888753111111101
Q gi|254780316|r 566 DFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPF 632 (805)
Q Consensus 566 ~i~lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l 632 (805)
++||||++|+.+... ..+. ..+|...|.. ...|+.++...++.++...
T Consensus 111 --rVf~I~p~FR~E~~~-~~H~--------------~EFtmlE~e~--a~~d~~dlm~~~E~li~~v 158 (345)
T 3a5y_A 111 --PVFQLCRSFRNEEMG-RYHN--------------PEFTMLEWYR--PHYDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp --SEEEEEEEECCCCCB-TTBC--------------SEEEEEEEEE--ETCCHHHHHHHHHHHHHHH
T ss_pred --CCEEEECCCCCCCCC-CCCC--------------CCEEEEEEEE--CCCCHHHHHHHHHHHHHHH
T ss_conf --727983453269989-8857--------------6345534432--4799999999999999999
No 62
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=67.12 E-value=2.2 Score=20.36 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=24.8
Q ss_pred CE-EEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCC
Q ss_conf 74-899999975657998708999759995798975483
Q gi|254780316|r 43 PF-TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAP 80 (805)
Q Consensus 43 ~v-vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~ 80 (805)
.| |-|.|.++..|= ..|....+..|.+ .+||||-+.
T Consensus 38 ~V~v~G~V~~~R~~G-k~l~Fi~LrD~~g-~iQvv~~~~ 74 (487)
T 1eov_A 38 EVLFRARVHNTRQQG-ATLAFLTLRQQAS-LIQGLVKAN 74 (487)
T ss_dssp EEEEEEEEEEEEECS-SSEEEEEEEETTE-EEEEEEECC
T ss_pred EEEEEEEEECCCCCC-CCCEEEEEEECCE-EEEEEEECC
T ss_conf 999999881101489-9888899986988-799999788
No 63
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=65.01 E-value=2.9 Score=19.55 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHC-CCCC
Q ss_conf 889546789887877877402321004825765520----00000002467764321015122110677643210-1586
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFG----GGQRELEILNPISADMSNMRTSLLPGLLKATGRNV-DRAI 564 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~----~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~-~r~~ 564 (805)
..+...+.+|+.+...||+|+.|-.|.+.+..+.-+ ..+....... ......+|++--......+..+. .++.
T Consensus 32 l~~~Ie~~~r~~~~~~G~~EI~tPil~~~eL~~~SG~~d~~~~emf~~~~--~~~~~~l~p~~e~~~~~~~~~~~~s~~~ 109 (401)
T 1evl_A 32 IFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIFNQGLKSYRD 109 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEE--TTEEEEECSCSHHHHHHHHTSSCCBGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEEC--CCCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 99999999999999859979989851887898772770214632066404--5510014777771386898631300245
Q ss_pred CHHHHHHHCCCCCCCC
Q ss_conf 1134543024444777
Q gi|254780316|r 565 ADFAIFEVSHVYENDT 580 (805)
Q Consensus 565 ~~i~lFEiG~Vf~~~~ 580 (805)
..+++|++|.+|+.+.
T Consensus 110 lP~~~yqig~~fR~E~ 125 (401)
T 1evl_A 110 LPLRMAEFGSCHRNEP 125 (401)
T ss_dssp CSEEEEEEEEEECCCC
T ss_pred CCEEEEEEEEEEECCC
T ss_conf 6823303601693565
No 64
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=64.59 E-value=2.9 Score=19.58 Aligned_cols=35 Identities=17% Similarity=-0.033 Sum_probs=24.8
Q ss_pred EEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 48999999756579987089997599957989754834
Q gi|254780316|r 44 FTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPN 81 (805)
Q Consensus 44 vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~N 81 (805)
.|.|.|..+..|-+ +....+..+.+ .+|||+-..+
T Consensus 20 ~v~GrV~~~R~~Gk--l~F~~LrD~~g-~iQvv~~~~~ 54 (434)
T 1x54_A 20 RLAGWVYTNMRVGK--KIFLWIRDSTG-IVQAVVAKNV 54 (434)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEETTE-EEEEEECHHH
T ss_pred EEEEEEEEEECCCC--CEEEEEECCCC-CEEEEEECCC
T ss_conf 99998670765799--29999980882-5899997997
No 65
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=62.79 E-value=2.9 Score=19.58 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-----HHHHHHCCCCC-C--CCCCCCCCCCHHHCHHHHHHHHHCC
Q ss_conf 88954678988787787740232100482576552-----00000000246-7--7643210151221106776432101
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLF-----GGGQRELEILN-P--ISADMSNMRTSLLPGLLKATGRNVD 561 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-----~~~~~~i~l~N-P--lS~e~s~lR~SLlp~LL~~~~~N~~ 561 (805)
..+...+.+|+.+. .||.|+.+-.|++.+.+..- ++.++...+.. + ...+.=+|||+-=|++....+...+
T Consensus 73 i~~~i~~~~r~~~~-~G~~ev~tP~l~~~~~L~~~SGh~~~f~eemf~v~~~~~~~~~~~~~LrPt~e~~~~~~~~~~~~ 151 (501)
T 1nj1_A 73 IRKNTLKILRRILD-RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVR 151 (501)
T ss_dssp HHHHHHHHHHHHHT-TTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCC
T ss_conf 99999999999998-59989978864057898666456554464772784167545676068713788889999963201
Q ss_pred -CCCCHHHHHHHCCCCCCCCC
Q ss_conf -58611345430244447775
Q gi|254780316|r 562 -RAIADFAIFEVSHVYENDTP 581 (805)
Q Consensus 562 -r~~~~i~lFEiG~Vf~~~~~ 581 (805)
++.-.+++|++|++|+.+..
T Consensus 152 SyrdLPlri~q~g~~fR~E~~ 172 (501)
T 1nj1_A 152 SHTDLPMRFYQVVNTFRYETK 172 (501)
T ss_dssp BTTTCCEEEEEEEEEECCCCS
T ss_pred CCCCCCEEEEEECHHHCCCCC
T ss_conf 366798688876212125400
No 66
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=61.50 E-value=3.7 Score=18.83 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=48.0
Q ss_pred CEEEEEECCEEEEEEEEEEC-HHHHH------------------------HCCCCCCEEEEEEEHHHHHHHHHCCCCCCC
Q ss_conf 16999987929999985477-89999------------------------668799789999878762354520245663
Q gi|254780316|r 652 RSGIIKTSAEIVLGYFGEFH-PNILD------------------------FFGLSNPICGFEVYLDSIPISQKKRTKTKK 706 (805)
Q Consensus 652 rsa~I~~~gk~iiG~iG~ih-P~i~~------------------------~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~ 706 (805)
.+.+++++|..++|=--++| |.+++ +||. -|..+|-|-+|.|.........
T Consensus 466 ~~fDLv~~G~El~gGsqR~~d~~~q~~~~~~~gl~~~e~~~~~~~yld~~~yG~-pPhgGfGlG~dRLvm~ltg~~n--- 541 (580)
T 1l0w_A 466 LAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGA-PPHGGIAWGLDRLLALMTGSPS--- 541 (580)
T ss_dssp SEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTC-CCEEEEEEEHHHHHHHHHTCSS---
T ss_pred EEEEECCCCEEEEECEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEHHHHHHHHHHCCCC---
T ss_conf 599971487897026263379999999999837990566767999999977699-9876365589999999808996---
Q ss_pred CCCCCCCCCCE--EEEEEEECCCCCHHHHHH
Q ss_conf 13689888720--018999668879999999
Q gi|254780316|r 707 VVHLSSLHPVK--RDLAFIVDQHIPAGTLVN 735 (805)
Q Consensus 707 ~~~~s~fP~v~--RDls~iv~~~v~~~~I~~ 735 (805)
+.+...||-.. .|+-.-.|..++-+++..
T Consensus 542 IRdvi~FPr~~~~~~~~~~~p~~~~~~~~~~ 572 (580)
T 1l0w_A 542 IREVIAFPKNKEGKDPLTGAPSPVPEEQLRE 572 (580)
T ss_dssp GGGGSSSCCCTTSCBTTTTBSEECCHHHHHH
T ss_pred HHEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 6638668899898986779969899999986
No 67
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus}
Probab=59.90 E-value=7.1 Score=16.81 Aligned_cols=165 Identities=8% Similarity=-0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHHHHHC-CCCCCHHH
Q ss_conf 88954678988787787740232100482576552000000002467764321015122110677643210-15861134
Q gi|254780316|r 490 LQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNV-DRAIADFA 568 (805)
Q Consensus 490 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~i~l~NPlS~e~s~lR~SLlp~LL~~~~~N~-~r~~~~i~ 568 (805)
..+.+.+...+.+...||.|+.+-.|+..+.....+...+.-.-...+..+.-+|.++--.+|......-. ....-.++
T Consensus 277 Le~AL~~f~ld~~~~~gy~~v~~P~~v~~~~~~gtG~lp~f~~~~y~~~~~~~~LipTaEv~l~~~~~~~i~~~~~LP~~ 356 (536)
T 3err_A 277 YELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLR 356 (536)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETTTTEEECSSTHHHHHHHTTTCEEEGGGCSEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCC
T ss_conf 99999999999997604502301022246655222478530245554200231015666420344540754748658976
Q ss_pred HHHHCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 54302444477754431000221035431012462023454433331468887531111111014533303305886567
Q gi|254780316|r 569 IFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWY 648 (805)
Q Consensus 569 lFEiG~Vf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ll~~l~~~~~~~~~~~~~~~~ 648 (805)
++.++++|+.......+. .-|+...+---....-.+..... .....-|..+-...+.++..++....+-..++..-.+
T Consensus 357 ~~~~s~cfR~Eag~~g~d-trGL~RvhQF~KvE~~~~~~~~~-e~s~~~~~~~l~~~e~i~~~L~lpyrvv~~~~~dlg~ 434 (536)
T 3err_A 357 YAGYAPAFRSEAGSFGKD-VRGLMRVHQFHKVEQYVLTEASL-EASDRAFQELLENAEEILRLLELPYRLVEVATGDMGP 434 (536)
T ss_dssp EEEEEEEECCCTTCTTSS-CSTTSSCSEEEEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCT
T ss_pred CCCCCCCCCCCCCCCCCC-CCCHHHHCCEEEEEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 554698245555655754-42133313431489998536513-4579999999999999974248855999677776886
Q ss_pred CCCCEEEE
Q ss_conf 89816999
Q gi|254780316|r 649 HPGRSGII 656 (805)
Q Consensus 649 hPgrsa~I 656 (805)
-..+..+|
T Consensus 435 ~a~~kyDi 442 (536)
T 3err_A 435 GKWRQVDI 442 (536)
T ss_dssp TCSEEEEE
T ss_pred HHHHHCCE
T ss_conf 78752451
No 68
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=58.39 E-value=4.3 Score=18.35 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=29.5
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCC-CCCE-E----EECCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1134587899999998402221034-5623-6----6403454334402567676765352334
Q gi|254780316|r 415 SGIDVPIEDSLRILERLGFSVIGEY-DKFE-V----SVPSWRQDVEEKADLVEEILRIYGVDQI 472 (805)
Q Consensus 415 lG~~i~~~ei~~iL~~Lgf~v~~~~-~~~~-V----~vPs~R~DI~~e~DLiEEIaRiyGYdnI 472 (805)
+|.+. ++.+..+|-+|--.....+ .++. + ...-+|+=+...-+-|++.+.-+|..=+
T Consensus 114 ~aHh~-dD~~Et~l~~l~rg~~~~gl~~~~~~~~~~~~~i~RPlL~~~k~ei~~y~~~~~i~~~ 176 (433)
T 1ni5_A 114 TAQHL-DDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWI 176 (433)
T ss_dssp CCCCH-HHHHHHHHHHHTTTCCTTGGGCCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCCB
T ss_pred EEEEC-HHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 20011-0389999998725776433434322211578508875001869999999874677620
No 69
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=55.78 E-value=2.8 Score=19.65 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=20.7
Q ss_pred CEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 7899998787623545202456631368988872
Q gi|254780316|r 683 PICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPV 716 (805)
Q Consensus 683 ~v~~~EI~ld~L~~~~~~~~~~~~~~~~s~fP~v 716 (805)
|+.++-|-+|.|..............++|+.|.+
T Consensus 257 p~~G~glGidRL~m~l~g~~~Irev~~FPR~~g~ 290 (294)
T 1nnh_A 257 PSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290 (294)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred CCCEEEEHHHHHHHHHHCCCCHHHEEECCCCCCC
T ss_conf 9768867699999998289847706406889997
No 70
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=49.89 E-value=6.1 Score=17.28 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=27.1
Q ss_pred EEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 489999997565799870899975999579897548345
Q gi|254780316|r 44 FTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNV 82 (805)
Q Consensus 44 vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA~Nv 82 (805)
.|.|.|..+..|- .+....+..+.+ .+|+||...++
T Consensus 60 ~v~G~V~~~R~~G--kl~Fi~LrD~~g-~iQvv~~~~~~ 95 (493)
T 3a74_A 60 AVAGRIMTKRGMG--KAGFAHIQDVTG-QIQIYVRQDDV 95 (493)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEETTE-EEEEEEEHHHH
T ss_pred EEEEEEEEEECCC--CCEEEEEEECCE-EEEEEEECCCC
T ss_conf 9999878286799--949999992986-89999928746
No 71
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-2, protein structure initiative; NMR {Synechococcus elongatus}
Probab=44.11 E-value=4.6 Score=18.16 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=44.6
Q ss_pred EECCCCHHHHHHCCCCCHHHHHHH-HHHHHHHHHCCCCCCEE--EECCCCCCCCCHHHHHHH
Q ss_conf 000431133331134587899999-99840222103456236--640345433440256767
Q gi|254780316|r 404 IVFMNSEVKRLSGIDVPIEDSLRI-LERLGFSVIGEYDKFEV--SVPSWRQDVEEKADLVEE 462 (805)
Q Consensus 404 I~l~~~~i~~ilG~~i~~~ei~~i-L~~Lgf~v~~~~~~~~V--~vPs~R~DI~~e~DLiEE 462 (805)
++++.+-+-++|--++++.++.+. -++||+......+.|.. ..|.||..--.+-|+|++
T Consensus 3 ~~Ls~~~l~~Il~d~~sD~~V~elVW~~LGYr~d~~~~~W~~~~v~p~W~e~yPe~P~~I~~ 64 (120)
T 2l1n_A 3 ITITDELLWAILKDELSDAEANALVWQALGYVWDEAQSCWKTDLVAPEWRQDYPEPPDFIAS 64 (120)
T ss_dssp CCCCHHHHHHHHHTCSCHHHHHHHHHHHHTCCEETTTTEECCTTSCHHHHTTCSSCCCTTTC
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHC
T ss_conf 63269999999970448999999999997873388778787898881699867997268861
No 72
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=37.20 E-value=2.9 Score=19.56 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.3
Q ss_pred CEEEEEEEHH
Q ss_conf 7899998787
Q gi|254780316|r 683 PICGFEVYLD 692 (805)
Q Consensus 683 ~v~~~EI~ld 692 (805)
+.++|-|++|
T Consensus 262 ~avG~ai~ld 271 (275)
T 1usy_A 262 KGVGGSIFLE 271 (275)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
T ss_conf 7348899722
No 73
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=32.69 E-value=18 Score=13.90 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=24.5
Q ss_pred EEEEEEEEEEECCCCC---CCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC
Q ss_conf 4899999975657998---708999759995798975483455897898966
Q gi|254780316|r 44 FTIVKVLSVERNPDLD---CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAP 92 (805)
Q Consensus 44 vvvg~v~~~~~hP~ad---l~v~~Vd~g~~~~~~IvcgA~Nv~~g~~V~~A~ 92 (805)
-|+|.|.+..|||.-. |.+++-.-| ....|.+-.--...|.+|.++.
T Consensus 5 rViG~vvaT~K~~~L~G~kLlvvq~~~~--g~~~VAvD~vGAG~Ge~Vlv~~ 54 (91)
T 2rcf_A 5 QVEKTLVSTNRIADMGHKPLLVVWEKPG--APRQVAVDAIGCIPGDWVLCVG 54 (91)
T ss_dssp EEEEECCSEEECTTSCSSCEEEEESSTT--SCCEEEEESSCCCTTCEEEEEE
T ss_pred EEEEEEEEEEECCCCCCCEEEEEEECCC--CCEEEEEECCCCCCCCEEEEEC
T ss_conf 9998899953728889978999997789--9779999777889999999957
No 74
>2j0s_T Protein CASC3; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} PDB: 2j0q_I* 2xb2_T* 3ex7_D* 2j0u_T 2hyi_D*
Probab=32.14 E-value=11 Score=15.41 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=20.4
Q ss_pred CCCCCCCCHHH----HHHHHHHHCCCC
Q ss_conf 34543344025----676767653523
Q gi|254780316|r 448 SWRQDVEEKAD----LVEEILRIYGVD 470 (805)
Q Consensus 448 s~R~DI~~e~D----LiEEIaRiyGYd 470 (805)
.|.||-..+.+ --+|++++||||
T Consensus 81 rW~HDrF~E~eQ~pksr~El~~~YGyD 107 (150)
T 2j0s_T 81 RWEHDKFREDEQAPKSRQELIALYGYD 107 (150)
T ss_dssp CCCCTTCCSGGGCC-------------
T ss_pred CCCCCCCCHHCCCCCCHHHHHHHHCCC
T ss_conf 564334120002778899999983864
No 75
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=31.28 E-value=19 Score=13.74 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 4587899999998402221
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVI 436 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~ 436 (805)
+++.+++.+.++.+||+++
T Consensus 46 ~~~~~~i~~~i~~~GY~~e 64 (64)
T 2xmm_A 46 ALGEEQLRTAIASAGYEVE 64 (64)
T ss_dssp SSCHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHCCCCCC
T ss_conf 5999999999997299889
No 76
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=31.21 E-value=19 Score=13.73 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=20.9
Q ss_pred CCCCCCHHHCHHHHHHHHHCCCCCC--HHHHHHHCC-CCCCC
Q ss_conf 2101512211067764321015861--134543024-44477
Q gi|254780316|r 541 MSNMRTSLLPGLLKATGRNVDRAIA--DFAIFEVSH-VYEND 579 (805)
Q Consensus 541 ~s~lR~SLlp~LL~~~~~N~~r~~~--~i~lFEiG~-Vf~~~ 579 (805)
.=+||++-=+.+....+.-. +... .+++|+++. +|+..
T Consensus 318 ~y~L~Pt~c~~~~~~~~~~~-~s~~dLPlk~~~~s~~~fR~E 358 (522)
T 2cja_A 318 IGGMCYAQCPPFWMYVAGET-LPNEEIPVKVFDRSGTSHRYE 358 (522)
T ss_dssp CEEECSSSSGGGGGGTTTCE-ECGGGCSEEEEECSSEEECCC
T ss_pred CEEECCCCCHHHHHHHHCCC-CCCCCCCHHHHHCCCEEEEEC
T ss_conf 56660577199999971863-570002488874040268745
No 77
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
Probab=29.01 E-value=13 Score=14.90 Aligned_cols=43 Identities=2% Similarity=-0.032 Sum_probs=23.6
Q ss_pred CCCCCCCCCCHHHCHHHHHHHH-HCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 7643210151221106776432-1015861134543024444777
Q gi|254780316|r 537 ISADMSNMRTSLLPGLLKATGR-NVDRAIADFAIFEVSHVYENDT 580 (805)
Q Consensus 537 lS~e~s~lR~SLlp~LL~~~~~-N~~r~~~~i~lFEiG~Vf~~~~ 580 (805)
+....-+|+++-=+.+...++. ...+. ..++++++|.+|+.+.
T Consensus 139 ~~~~~~~L~Pt~c~~i~~~~~~~~~~~d-lP~~~~~~~~~fR~E~ 182 (346)
T 3mf2_A 139 LSPADLVLSPAACYPVYPIAASRGPLPK-GGLRFDVAADCFRREP 182 (346)
T ss_dssp EEEEEEEECSSSSTTHHHHHHTTCSCCT-TCEEEEEEEEEECCCC
T ss_pred CCCCCEEECCCCCHHHHHHHCCCCCCCC-CCEEEEEECCEEECCC
T ss_conf 4776568707871888999725735513-4879999747883789
No 78
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=27.43 E-value=22 Score=13.29 Aligned_cols=50 Identities=30% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCC---------CCCEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4587899999998402221034---------562366403454334402567676765352
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGEY---------DKFEVSVPSWRQDVEEKADLVEEILRIYGV 469 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~~---------~~~~V~vPs~R~DI~~e~DLiEEIaRiyGY 469 (805)
.....++.+.|++.||...... ++-.++||.+..| ....+.-.|.|--|.
T Consensus 4 P~k~~el~k~L~~~Gf~~~r~kGsH~~~~~~~~~~~~vp~h~ke--i~~gtl~~Ilkqagl 62 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRIVVVPFHSGE--LPKGTFKRILRDAGL 62 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCEEEEECSSSS--CCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCEEECCCCCEEEEECCCCCEEECCCCCCC--CCHHHHHHHHHHCCC
T ss_conf 98899999999988928936788743788499998977899885--888999999999099
No 79
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=26.30 E-value=23 Score=13.15 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=38.0
Q ss_pred CCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCCCCCHHHHHHHHH
Q ss_conf 5543100004311333311345878999999984022210345623-664034543344025676767
Q gi|254780316|r 398 TYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFE-VSVPSWRQDVEEKADLVEEIL 464 (805)
Q Consensus 398 ~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~-V~vPs~R~DI~~e~DLiEEIa 464 (805)
-..|..+.++......+ ++..+.|+++||.++..++.+. -.+|++=.+. ...+++.|+.
T Consensus 57 LL~P~~v~ls~~e~~~l-------~~~~~~L~~lGf~~e~~~~~~~I~~vP~~l~~~-~~~~~i~dll 116 (188)
T 1x9z_A 57 LLIPLRLKVSAEEKSAL-------EKAQSALAELGIDFQSDAQHVTIRAVPLPLRQQ-NLQILIPELI 116 (188)
T ss_dssp EEEEEEEECCHHHHHHH-------HHHHHHHHHTTCEEEECSSEEEEEEEEGGGTTS-CHHHHHHHHH
T ss_pred CCCCEEECCCHHHHHHH-------HHHHHHHHHCCCEEEEECCEEEEEECCHHHCCC-CHHHHHHHHH
T ss_conf 57893752899999999-------999999997795999617889999779211547-8999999999
No 80
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=25.96 E-value=23 Score=13.11 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=36.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 33331134587899999998402221034562366403454334402567676765352334667655443457678998
Q gi|254780316|r 411 VKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSL 490 (805)
Q Consensus 411 i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~~~l~~~~~~~~~~~~~ 490 (805)
+-.+|...++++||..+-..|--.- .. +.-| ...|+-+.|.++-..+ | +.
T Consensus 36 LLALLrR~LtedeV~~Va~~l~~~~--~~----------~~~i-~~~dI~~~I~~vt~~~-------P----------~~ 85 (107)
T 3ol3_A 36 LLALLKRSLTEDEVVRAAQAILRST--DG----------QSPV-TDDDIRNAVHQIIEKE-------P----------TA 85 (107)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHC--CS----------SSCB-CHHHHHHHHHHHHSSC-------C----------CH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCC--CC----------CCCC-CHHHHHHHHHHHHCCC-------C----------CH
T ss_conf 9999833499999999999997523--78----------8987-8999999999987469-------8----------98
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89546789887877877
Q gi|254780316|r 491 QQSRTRYVKRVLASRAM 507 (805)
Q Consensus 491 ~~~~~~~ir~~L~~~Gf 507 (805)
+. ..+++..|.+.|+
T Consensus 86 -eD-I~RV~arLaa~GW 100 (107)
T 3ol3_A 86 -EE-INQVAARLASVGW 100 (107)
T ss_dssp -HH-HHHHHHHHHTTTC
T ss_pred -HH-HHHHHHHHHHCCC
T ss_conf -99-9999999985689
No 81
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=24.58 E-value=14 Score=14.63 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0431133331134587899999998402221
Q gi|254780316|r 406 FMNSEVKRLSGIDVPIEDSLRILERLGFSVI 436 (805)
Q Consensus 406 l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~ 436 (805)
|........-|.+.+.+.+.+.|+.|||+|.
T Consensus 71 F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~ 101 (310)
T 2nn3_C 71 FDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT 101 (310)
T ss_dssp CSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 6888888999858999999999998889899
No 82
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} SCOP: b.40.14.1
Probab=24.37 E-value=25 Score=12.91 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=29.8
Q ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCEEEEEC--CCCCCCCCCEEEEECCCCEE
Q ss_conf 899999975657998708999759995798975--48345589789896687792
Q gi|254780316|r 45 TIVKVLSVERNPDLDCAILRIDTGKHQEIQVVC--GAPNVRVGLLGVWAPPGSCI 97 (805)
Q Consensus 45 vvg~v~~~~~hP~adl~v~~Vd~g~~~~~~Ivc--gA~Nv~~g~~V~~A~~Ga~l 97 (805)
+-|+|+++.. +...+.||+|. ..++|-. -.-++++|+||.|-. |.-+
T Consensus 26 IP~kVveI~~----~~~~A~Vd~~G-v~reV~l~Lv~e~v~vGDyVLVHa-GfAI 74 (103)
T 3d3r_A 26 IPSQVVAVDN----ERQSVTVDTLG-VRRDVSSHLMTEPLAIGDYVLIHI-GFVM 74 (103)
T ss_dssp CCEEEEEEET----TTTEEEEEETT-EEEEEECTTBSSCCCTTCEEEEEE-EEEE
T ss_pred ECEEEEEECC----CCCEEEEECCC-EEEEEEEECCCCCCCCCCEEEEEC-CHHH
T ss_conf 1519999929----88889996799-499998101567888998999951-6676
No 83
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=22.64 E-value=27 Score=12.68 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 67269999715787888778876165401554413
Q gi|254780316|r 327 NTTDVLVEVALWDPINIARSGKNLGIITDSRYRFE 361 (805)
Q Consensus 327 ~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfE 361 (805)
--|.|+|++--=-|..||+.-.+|++..|-+-+||
T Consensus 17 ~YKSIlltsqDrtp~VI~~Al~Kh~l~~d~~~~Y~ 51 (87)
T 1lfd_A 17 MYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYE 51 (87)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEE
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 88899986388677999999998388878802218
No 84
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=22.37 E-value=27 Score=12.65 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 399999899986087000001022
Q gi|254780316|r 248 ALVDITNYVSLDRGYPSHVFDASR 271 (805)
Q Consensus 248 niVDitNyvmle~GqPlHafD~dk 271 (805)
..+|+...+|=+-|+|||+.|+=+
T Consensus 14 Smid~Ay~iL~~~~~pm~F~dL~~ 37 (99)
T 2krc_A 14 ALVEIAHELFEEHKKPVPFQELLN 37 (99)
T ss_dssp CHHHHHHHHHHHHCSCEEHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 299999999998399704999999
No 85
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=21.67 E-value=28 Score=12.55 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 456236640345433440256767676535233466
Q gi|254780316|r 439 YDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKS 474 (805)
Q Consensus 439 ~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdnIp~ 474 (805)
.+.|.|.+|. -.|.+++||+-+||.|+-.
T Consensus 12 tN~WAV~i~g-------g~~~A~~iA~~hGf~n~Gq 40 (90)
T 1kn6_A 12 VNEWAAEIPG-------GQEAASAIAEELGYDLLGQ 40 (90)
T ss_dssp CCCEEEECSS-------THHHHHHHHHHHTCEECCC
T ss_pred EEEEEEEECC-------CHHHHHHHHHHCCCEEECC
T ss_conf 0127999469-------7589999999809777367
No 86
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1
Probab=21.49 E-value=18 Score=13.94 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=18.9
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1133331134587899999998402221
Q gi|254780316|r 409 SEVKRLSGIDVPIEDSLRILERLGFSVI 436 (805)
Q Consensus 409 ~~i~~ilG~~i~~~ei~~iL~~Lgf~v~ 436 (805)
.......|.+.+.+.+.+.|+.|||+|.
T Consensus 46 ~~~~~R~g~~~D~~~L~~~f~~lGF~V~ 73 (272)
T 1m72_A 46 HSLKSRTGTNVDSDNLSKVLKTLGFKVT 73 (272)
T ss_dssp TTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 8888899848999999999998899999
No 87
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=21.13 E-value=21 Score=13.51 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 458789999999840222103
Q gi|254780316|r 418 DVPIEDSLRILERLGFSVIGE 438 (805)
Q Consensus 418 ~i~~~ei~~iL~~Lgf~v~~~ 438 (805)
.++.+++.++++++--.-...
T Consensus 204 ~l~~~ei~~~~~~~~~~~~~~ 224 (235)
T 1q5q_H 204 HVSEETTSELARRIVAERTEQ 224 (235)
T ss_dssp ECCHHHHHHHHHHHHHHHHTC
T ss_pred ECCHHHHHHHHHHHHHHHHCC
T ss_conf 949999999999999886338
No 88
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=20.99 E-value=29 Score=12.46 Aligned_cols=19 Identities=5% Similarity=0.289 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999999999
Q gi|254780316|r 777 TFRDDDIRILMDRIVENVV 795 (805)
Q Consensus 777 TLtd~EI~~i~~~ii~~l~ 795 (805)
.+.-+|+-+...++++.++
T Consensus 551 rv~i~el~~~l~~L~~~~~ 569 (572)
T 2j3l_A 551 EVRKEELESTLSILMNTTS 569 (572)
T ss_dssp EEEHHHHHHHHHHHCC---
T ss_pred EECHHHHHHHHHHHHHHHH
T ss_conf 8709999999999998886
No 89
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=20.93 E-value=26 Score=12.82 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=3.8
Q ss_pred EECCCCCHHHH
Q ss_conf 96688799999
Q gi|254780316|r 723 IVDQHIPAGTL 733 (805)
Q Consensus 723 iv~~~v~~~~I 733 (805)
+||.+.++++|
T Consensus 27 ~VDdSqtV~~l 37 (128)
T 2kc2_A 27 MVDDSKTVTDM 37 (128)
T ss_dssp EEEECSSHHHH
T ss_pred EEECCCCHHHH
T ss_conf 96086279999
No 90
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural genomics, PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=20.59 E-value=29 Score=12.40 Aligned_cols=30 Identities=3% Similarity=0.069 Sum_probs=20.6
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999984779888999999999999999999951
Q gi|254780316|r 766 AIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTN 799 (805)
Q Consensus 766 a~rl~fqs~~kTLtd~EI~~i~~~ii~~l~~k~g 799 (805)
++|+.+.- .=|.+||+...+.+-+ +.+.||
T Consensus 377 ~vRvS~~~---~nt~eDId~l~~~l~~-i~r~~g 406 (406)
T 1kmj_A 377 MCRASLAM---YNTHEEVDRLVTGLQR-IHRLLG 406 (406)
T ss_dssp EEEEECCT---TCCHHHHHHHHHHHHH-HHHHHC
T ss_pred EEEEECCC---CCCHHHHHHHHHHHHH-HHHHHC
T ss_conf 89997889---8999999999999999-998609
No 91
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=20.17 E-value=30 Score=12.34 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 56236640345433440256767676535233
Q gi|254780316|r 440 DKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ 471 (805)
Q Consensus 440 ~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdn 471 (805)
.++.||+| |...+..-.|-+.|.||..|-=|
T Consensus 60 ~G~nVT~P-~K~~v~~~ld~~~~~A~~igavN 90 (282)
T 3fbt_A 60 GGLNVTIP-YKVEVMKELYEISEKARKIGAVN 90 (282)
T ss_dssp CEEEECTT-CTTGGGGGCSEECHHHHHHTCCC
T ss_pred CEEEECHH-HHHHHHHHHHHHCHHHEECCCEE
T ss_conf 98998773-59999998755053330335168
Done!