BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (805 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 1631 bits (4224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 805/805 (100%), Positives = 805/805 (100%) Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDC 60 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDC Sbjct: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDC 60 Query: 61 AILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCS 120 AILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCS Sbjct: 61 AILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCS 120 Query: 121 EKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVA 180 EKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVA Sbjct: 121 EKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVA 180 Query: 181 AGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKA 240 AGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKA Sbjct: 181 AGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKA 240 Query: 241 VGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPD 300 VGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPD Sbjct: 241 VGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPD 300 Query: 301 NVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRF 360 NVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRF Sbjct: 301 NVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRF 360 Query: 361 ERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVP 420 ERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVP Sbjct: 361 ERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVP 420 Query: 421 IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLT 480 IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLT Sbjct: 421 IEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLT 480 Query: 481 QVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISAD 540 QVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISAD Sbjct: 481 QVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISAD 540 Query: 541 MSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEG 600 MSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEG Sbjct: 541 MSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEG 600 Query: 601 SGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSA 660 SGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSA Sbjct: 601 SGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSA 660 Query: 661 EIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDL 720 EIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDL Sbjct: 661 EIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDL 720 Query: 721 AFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRD 780 AFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRD Sbjct: 721 AFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRD 780 Query: 781 DDIRILMDRIVENVVKKTNAVLRSS 805 DDIRILMDRIVENVVKKTNAVLRSS Sbjct: 781 DDIRILMDRIVENVVKKTNAVLRSS 805 >gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 209 DDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAV 241 DD+ + +G A+C ++G + + + +KAV Sbjct: 161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193 >gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 209 DDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAV 241 DD+ + +G A+C ++G + + + +KAV Sbjct: 161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 25.4 bits (54), Expect = 4.2, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 19/36 (52%) Query: 406 FMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDK 441 M E RL +D DS++++E G + E+DK Sbjct: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254 >gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 25.0 bits (53), Expect = 4.4, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 219 MCCVKGVRNNVAPNWMRQRLKAVGLRSISALV 250 +CC + +R N NW+R+ ++ L S+S L+ Sbjct: 11 ICCHRRMRRNRKSNWIREMVREHRL-SVSDLI 41 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 24.3 bits (51), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 373 LKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGI-DVPIEDSLRILERL 431 L H SL L GG +CIAR + P +++ M+ L I +E+ + L Sbjct: 144 LFHDASL---LSGGQQQRVCIARALAVNP-EVILMDEPCSALDPIATASVEELIHELRES 199 Query: 432 GFSVIGEYDKFEVSVPSWRQDVEEKADLVEE 462 VI + + + S R + LVEE Sbjct: 200 LTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 520,865 Number of Sequences: 1233 Number of extensions: 22928 Number of successful extensions: 74 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 7 length of query: 805 length of database: 328,796 effective HSP length: 81 effective length of query: 724 effective length of database: 228,923 effective search space: 165740252 effective search space used: 165740252 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 42 (20.8 bits)