HHsearch alignment for GI: 254780317 and conserved domain: COG0016
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=926.28 Aligned_cols=329 Identities=47% Similarity=0.861 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHCCCCHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998506998-99999999980864068999876158998-8999999999999999999999999999
Q gi|254780317|r 8 EDEVERIRSSLYNSIASVTDM-DSLNAIRVATLGRKGSISSLLKDLKNLDS-QQVSARGAILNQLKVDISGKISARKDFI 85 (366)
Q Consensus 8 ~eeI~~L~~e~~~~I~~a~~~-~eLe~lrv~~LGKKG~Lt~llK~Lk~Ls~-EeKk~~Gk~iNelK~~Ie~~i~~kk~~L 85 (366)
T Consensus 3 ~~~l~~l~~~~~~~i~~~~~~~~~L~~~~~~~lgk~g~l~~~~k~l~~~~~~eer~~~g~~in~~~~~~~~~~~~~~~~l 82 (335)
T COG0016 3 MIALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPEL 82 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67999999998899886203799999999985276410699998724587366522320447766799999999988999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 85676667654310000011232122674238999999999999873987623723415889888618988773316331
Q gi|254780317|r 86 RNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHD 165 (366)
Q Consensus 86 ~~~~~~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqD 165 (366)
T Consensus 83 ~~~~~~~~l~~e~~dv~lp--~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqD 160 (335)
T COG0016 83 EAAGLWERLAFEKIDVTLP--GRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQD 160 (335)
T ss_pred HHHHHHHHHHCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 9878988622157775788--86677898670899999999999974966645882132022524324999998412444
Q ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHCCC-EEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 27750566655632244676305555430363-122541057647454-4213781002005786178668999889999
Q gi|254780317|r 166 TFFVPGIAGGKHKLLRTHTSPVQIRVMESQDL-PIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLES 243 (366)
Q Consensus 166 TFyl~~~~~~~~~lLRthTS~vQiR~m~~~~p-P~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~ 243 (366)
T Consensus 161 TFy~~~~~~--~~lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~ 238 (335)
T COG0016 161 TFYLKDDRE--KLLLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEE 238 (335)
T ss_pred EEEECCCCC--CEEECCCCCHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCCHHEEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 378768877--300236682765999984799991584566341178877642610133678999589569999999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 99997088866264542388985266103678750588042246883489845756388899856988000379963134
Q gi|254780317|r 244 FCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMG 323 (366)
Q Consensus 244 ~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G 323 (366)
T Consensus 239 f~~~~fg-~~~~vRfrpsyFPFTEPS~Evdv~~~~~---------~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlG 308 (335)
T COG0016 239 FAKKFFG-EDVKVRFRPSYFPFTEPSAEVDVYCPGC---------GGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLG 308 (335)
T ss_pred HHHHHCC-CCCCEEEECCCCCCCCCEEEEEEEECCC---------CCEEEEECCCCCCHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 9999637-7763576068789899717899997687---------86899835654578889745999876058887404
Q ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHH
Q ss_conf 469979973897058766358888874
Q gi|254780317|r 324 LDRIAMLKYGMPDVREFFGADVRWIEH 350 (366)
Q Consensus 324 ~eRlaml~~gi~diR~~~~~d~rfl~q 350 (366)
T Consensus 309 lERlAMLkygI~DIR~l~~~D~rfl~q 335 (335)
T COG0016 309 LERLAMLKYGIPDIRDLYENDLRFLRQ 335 (335)
T ss_pred HHHHHHHHHCCCHHHHHHHCCCHHHCC
T ss_conf 889999982980799987465133229