HHsearch alignment for GI: 254780317 and conserved domain: COG0124
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=97.61 E-value=0.0017 Score=46.61 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHC--CCCCCCCCCCCCEEE-EECCCCCCCCCCCCCCCCHHH
Q ss_conf 74238999999999999873987623723415889888618--988773316331277-505666556322446763055
Q gi|254780317|r 113 GRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALN--FPDDHPARQMHDTFF-VPGIAGGKHKLLRTHTSPVQI 189 (366)
Q Consensus 113 G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLN--iP~~HPARdmqDTFy-l~~~~~~~~~lLRthTS~vQi 189 (366)
T Consensus 16 ~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~----telf~r~~Ge~--td~v~kemY~F~D-kggr~laLRpe~Tapv~ 88 (429)
T COG0124 16 EDMALREYIESTIRKVFESYGFSEIRTPIFEY----TELFARKSGEE--TDVVEKEMYTFKD-KGGRSLALRPELTAPVA 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC----HHHHHHCCCCC--CCCCCCCEEEEEE-CCCCEEEECCCCCHHHH
T ss_conf 77899999999999999980997655755111----66762016974--3333210289994-89988984466749999
Q ss_pred HHHHHC----CCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCC
Q ss_conf 554303----63122541057647454-4213781002005786178
Q gi|254780317|r 190 RVMESQ----DLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDS 231 (366)
Q Consensus 190 R~m~~~----~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~ 231 (366)
T Consensus 89 R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~ 135 (429)
T COG0124 89 RAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSD 135 (429)
T ss_pred HHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCEEEEECCEEEECCC
T ss_conf 99995622036872599833562378888887503687676776799