HHsearch alignment for GI: 254780317 and conserved domain: COG1190
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=97.08 E-value=0.0016 Score=46.65 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42389999999999998739876237234158898886189887733163312775056665563224467630555543
Q gi|254780317|r 114 RIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVME 193 (366)
Q Consensus 114 ~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~ 193 (366)
T Consensus 179 ~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~-------------dlyLRIApELyLKRli- 244 (502)
T COG1190 179 TFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDM-------------DLYLRIAPELYLKRLI- 244 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEECCCCC-------------CEEEEECCHHHHHHHH-
T ss_conf 99999999999999998779758416000355787322650122023677-------------5687624189999887-
Q ss_pred HCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEE--ECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 0363122541057647454-421378100200578--617866899988999999997088866264542388985
Q gi|254780317|r 194 SQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLV--VSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFT 266 (366)
Q Consensus 194 ~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~--v~~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPft 266 (366)
T Consensus 245 VGG~-erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~g--t~~v~y~~~~id~~ 317 (502)
T COG1190 245 VGGF-ERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNG--TTKVTYGGQEIDFS 317 (502)
T ss_pred HCCC-HHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCEEEECC
T ss_conf 5372-1422305520037876664842356899999857999999999999999999549--73787899767548