HHsearch alignment for GI: 254780317 and conserved domain: PRK00488
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated.
Probab=100.00 E-value=0 Score=1053.26 Aligned_cols=336 Identities=48% Similarity=0.909 Sum_probs=329.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999850699899999999980864068999876158998899999999999999999999999999985
Q gi|254780317|r 8 EDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARKDFIRN 87 (366)
Q Consensus 8 ~eeI~~L~~e~~~~I~~a~~~~eLe~lrv~~LGKKG~Lt~llK~Lk~Ls~EeKk~~Gk~iNelK~~Ie~~i~~kk~~L~~ 87 (366)
T Consensus 1 MedL~~L~~ea~~~I~~a~~~~eLe~lR~~yLGKKG~Lt~llk~Lk~L~~EEKk~~Gk~iNelK~~Ie~~i~~k~~~l~~ 80 (338)
T PRK00488 1 MEDLEELVEQALAAIAAASDLKALEALRVKYLGKKGELTELLKGLGKLPPEERKAAGALINEAKQAVQEALNARKAELEA 80 (338)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93699999999999986899999999999994960699999987636999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 67666765431000001123212267423899999999999987398762372341588988861898877331633127
Q gi|254780317|r 88 QLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTF 167 (366)
Q Consensus 88 ~~~~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTF 167 (366)
T Consensus 81 ~~~~~~L~~E~iDvTlP~--~~~~~G~~HPit~~~~ei~~iF~~~Gf~v~~GpeiE~~~~NFdaLn~P~~HPAR~~~DTF 158 (338)
T PRK00488 81 AELNARLAAETIDVTLPG--RRIELGGLHPLTRTIERIEDIFVGLGFEVAEGPEIEDDYYNFEALNIPKDHPARDMQDTF 158 (338)
T ss_pred HHHHHHHHCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 999877553246337878--888876647699999999999998697696188310045468875699788543646628
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 750566655632244676305555430363122541057647454-4213781002005786178668999889999999
Q gi|254780317|r 168 FVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCK 246 (366)
Q Consensus 168 yl~~~~~~~~~lLRthTS~vQiR~m~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~ 246 (366)
T Consensus 159 y~~-----~~~lLRTHTS~~qir~m~~~~pp~~~i~~GrvyR~d~~DatH~~~FhQ~Egl~vd~~it~~~Lk~~l~~f~~ 233 (338)
T PRK00488 159 YID-----DRLLLRTHTSPVQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLK 233 (338)
T ss_pred EEC-----CCCEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 976-----871343568788899997269986999526631589998753504664005897178879999999999999
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCE-EEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHH
Q ss_conf 970888662645423889852661036787505880-4224688348984575638889985698800037996313446
Q gi|254780317|r 247 SFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGI-IKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLD 325 (366)
Q Consensus 247 ~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~-~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~e 325 (366)
T Consensus 234 ~~fg-~~~~~R~rpsyFPFtEPs~Evdi~~~~~~g~gc~~~~~~~WlEi~G~Gmv~p~Vl~~~gid~~~~~G~AfG~Gie 312 (338)
T PRK00488 234 AFFG-EDLKIRFRPSYFPFTEPSAEVDVSCFNCKGKGCRVCKNTGWLEVLGCGMVHPNVLRNVGIDPEEYSGFAFGMGIE 312 (338)
T ss_pred HHCC-CCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEECHH
T ss_conf 9728-766477547889999985347887314577665447899638973766678899986699955275998751588
Q ss_pred HHHHHHCCCCCHHHHHHCCHHHHHHC
Q ss_conf 99799738970587663588888744
Q gi|254780317|r 326 RIAMLKYGMPDVREFFGADVRWIEHY 351 (366)
Q Consensus 326 Rlaml~~gi~diR~~~~~d~rfl~qf 351 (366)
T Consensus 313 R~aMl~~gi~DiR~~~~~D~rfl~QF 338 (338)
T PRK00488 313 RLAMLRYGINDLRDFFENDLRFLKQF 338 (338)
T ss_pred HHHHHHCCCCHHHHHHHCCHHHHHCC
T ss_conf 99999809966898873668788449