HHsearch alignment for GI: 254780317 and conserved domain: PRK00488

>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated.
Probab=100.00  E-value=0  Score=1053.26  Aligned_cols=336  Identities=48%  Similarity=0.909  Sum_probs=329.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999850699899999999980864068999876158998899999999999999999999999999985
Q gi|254780317|r    8 EDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARKDFIRN   87 (366)
Q Consensus         8 ~eeI~~L~~e~~~~I~~a~~~~eLe~lrv~~LGKKG~Lt~llK~Lk~Ls~EeKk~~Gk~iNelK~~Ie~~i~~kk~~L~~   87 (366)
T Consensus         1 MedL~~L~~ea~~~I~~a~~~~eLe~lR~~yLGKKG~Lt~llk~Lk~L~~EEKk~~Gk~iNelK~~Ie~~i~~k~~~l~~   80 (338)
T PRK00488          1 MEDLEELVEQALAAIAAASDLKALEALRVKYLGKKGELTELLKGLGKLPPEERKAAGALINEAKQAVQEALNARKAELEA   80 (338)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93699999999999986899999999999994960699999987636999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf             67666765431000001123212267423899999999999987398762372341588988861898877331633127
Q gi|254780317|r   88 QLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTF  167 (366)
Q Consensus        88 ~~~~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTF  167 (366)
T Consensus        81 ~~~~~~L~~E~iDvTlP~--~~~~~G~~HPit~~~~ei~~iF~~~Gf~v~~GpeiE~~~~NFdaLn~P~~HPAR~~~DTF  158 (338)
T PRK00488         81 AELNARLAAETIDVTLPG--RRIELGGLHPLTRTIERIEDIFVGLGFEVAEGPEIEDDYYNFEALNIPKDHPARDMQDTF  158 (338)
T ss_pred             HHHHHHHHCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf             999877553246337878--888876647699999999999998697696188310045468875699788543646628


Q ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             750566655632244676305555430363122541057647454-4213781002005786178668999889999999
Q gi|254780317|r  168 FVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCK  246 (366)
Q Consensus       168 yl~~~~~~~~~lLRthTS~vQiR~m~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~  246 (366)
T Consensus       159 y~~-----~~~lLRTHTS~~qir~m~~~~pp~~~i~~GrvyR~d~~DatH~~~FhQ~Egl~vd~~it~~~Lk~~l~~f~~  233 (338)
T PRK00488        159 YID-----DRLLLRTHTSPVQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLK  233 (338)
T ss_pred             EEC-----CCCEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             976-----871343568788899997269986999526631589998753504664005897178879999999999999


Q ss_pred             HHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCE-EEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHH
Q ss_conf             970888662645423889852661036787505880-4224688348984575638889985698800037996313446
Q gi|254780317|r  247 SFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGI-IKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLD  325 (366)
Q Consensus       247 ~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~-~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~e  325 (366)
T Consensus       234 ~~fg-~~~~~R~rpsyFPFtEPs~Evdi~~~~~~g~gc~~~~~~~WlEi~G~Gmv~p~Vl~~~gid~~~~~G~AfG~Gie  312 (338)
T PRK00488        234 AFFG-EDLKIRFRPSYFPFTEPSAEVDVSCFNCKGKGCRVCKNTGWLEVLGCGMVHPNVLRNVGIDPEEYSGFAFGMGIE  312 (338)
T ss_pred             HHCC-CCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEECHH
T ss_conf             9728-766477547889999985347887314577665447899638973766678899986699955275998751588


Q ss_pred             HHHHHHCCCCCHHHHHHCCHHHHHHC
Q ss_conf             99799738970587663588888744
Q gi|254780317|r  326 RIAMLKYGMPDVREFFGADVRWIEHY  351 (366)
Q Consensus       326 Rlaml~~gi~diR~~~~~d~rfl~qf  351 (366)
T Consensus       313 R~aMl~~gi~DiR~~~~~D~rfl~QF  338 (338)
T PRK00488        313 RLAMLRYGINDLRDFFENDLRFLKQF  338 (338)
T ss_pred             HHHHHHCCCCHHHHHHHCCHHHHHCC
T ss_conf             99999809966898873668788449