HHsearch alignment for GI: 254780317 and conserved domain: PRK00960
>PRK00960 seryl-tRNA synthetase; Provisional.
Probab=93.57 E-value=0.35 Score=29.65 Aligned_cols=148 Identities=19% Similarity=0.362 Sum_probs=85.7
Q ss_pred HHHHHCCCEEEEE-ECCCCCCCCCCCCC----CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEE-EE----
Q ss_conf 5543036312254-10576474544213----78100200578617866899988999999997088866264-54----
Q gi|254780317|r 190 RVMESQDLPIKVI-VPGKTYRRDSDSTH----SPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMR-FR---- 259 (366)
Q Consensus 190 R~m~~~~pP~~~~-~~GrvyR~d~D~tH----~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~~r-~r---- 259 (366)
T Consensus 326 e~v~~d~lPik~FDrSGwtyRwE~GG~~GleRV~EF~RiE~VW~gtpe-~ve~~r~~~~~y~~~~a-e~LdLE~w~ev~d 403 (516)
T PRK00960 326 ELVDVDELPIKFFDKSGWTYRWEGGGAKGLDRVNEFLRIECVWMGTPE-FVEEVRDDTLKYAHILA-EKLDLEYWTEVGD 403 (516)
T ss_pred CCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHEEEEEEECCHH-HHHHHHHHHHHHHHHHH-HHHCHHHHEEECC
T ss_conf 725655586578855886264047874323555010147778846889-99999888999999988-7743244223056
Q ss_pred -EC------------CCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCC----CCCEEEEEEEC
Q ss_conf -23------------88985266103678750588042246883489845756388899856988----00037996313
Q gi|254780317|r 260 -PS------------FFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGID----PDIYQGFAWGM 322 (366)
Q Consensus 260 -p~------------~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d----~~~~~g~AfG~ 322 (366)
T Consensus 404 dPfylegr~~e~r~iE~p~-vp~ye~~~~LP~~~------~e~k~v~v~s~nVhG~hf~eGF~VK~~~g~~~WtGC-tG~ 475 (516)
T PRK00960 404 DPFYLEGRKLEDRGIEFPD-VPKYEMRLWLPHIK------EERKGVAVTSANIHGTHFVEGFNVKDYKGRKLWTGC-TGV 475 (516)
T ss_pred CCHHHCCCCCCCCCCCCCC-CCCEEEEEECCCCC------CCCCEEEEEEEEECCCCCCCCCCCEECCCCEEECCC-CCC
T ss_conf 7503225654455643688-88546799657647------767726888863147535676522003587311377-644
Q ss_pred CHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 44699799738970587663588888744898446884145
Q gi|254780317|r 323 GLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPPLFS 363 (366)
Q Consensus 323 G~eRlaml~~gi~diR~~~~~d~rfl~qf~~~~~~~~~~~~ 363 (366)
T Consensus 476 GL~RWv~----------------gFLAQ~Gfd~~~WPe~i~ 500 (516)
T PRK00960 476 GLTRWVI----------------GFLAQKGFDPDNWPEEIR 500 (516)
T ss_pred CHHHHHH----------------HHHHHCCCCCCCCCHHHH
T ss_conf 5789999----------------999870798121649999