HHsearch alignment for GI: 254780317 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=98.98 E-value=2.8e-08 Score=81.56 Aligned_cols=107 Identities=20% Similarity=0.367 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCC-------CC
Q ss_conf 67654310000011232122674238999999999999873987623723415889888618988773316-------33
Q gi|254780317|r 92 EQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQ-------MH 164 (366)
Q Consensus 92 ~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARd-------mq 164 (366)
T Consensus 757 ~RlR~RYLDLr~----npe~r~~~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~---------~~GGA~ARPFlThsna~d 823 (1099)
T PRK02983 757 ARVRARYLDLAV----NPEARDLIRARSAVLRAVRETLVAKGFLEVETPILQQ---------IHGGANARPFLTHINAYD 823 (1099)
T ss_pred HHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC---------CCCCCCCCCCCCCCCCCC
T ss_conf 755645565158----9899999999999999999999878988955754677---------888756785301033678
Q ss_pred CEEEEECCCCCCCCCCCCCCCCHHH--HHHHHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEE
Q ss_conf 1277505666556322446763055--55430363122541057647454-42137810020057
Q gi|254780317|r 165 DTFFVPGIAGGKHKLLRTHTSPVQI--RVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGL 226 (366)
Q Consensus 165 DTFyl~~~~~~~~~lLRthTS~vQi--R~m~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl 226 (366)
T Consensus 824 ~~~YL-------------riAPELflKRLmVGG-f-eRVFEI~RcFRNEglradHnPEFTmLE~Y 873 (1099)
T PRK02983 824 LDLYL-------------RIAPELYLKRLCVGG-V-ERVFELGRAFRNEGVDFSHNPEFTLLEAY 873 (1099)
T ss_pred CCCEE-------------ECCHHHHHHHHHHCC-C-CCCEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 66145-------------148089999998648-6-31134325446799998749407999999