HHsearch alignment for GI: 254780317 and conserved domain: TIGR02367

>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.81  E-value=5.8e-05  Score=57.26  Aligned_cols=193  Identities=23%  Similarity=0.359  Sum_probs=133.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf             3899999999999987398762372341588988861898877331633127750566655632244676305555430-
Q gi|254780317|r  116 HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES-  194 (366)
Q Consensus       116 HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~-  194 (366)
T Consensus       240 ~ylGkler~it~ffvdrGfleiksPiliP~ey-~ermGi~ndt--elskqifrv-----dkn~ClrPmlaP~lynylrkl  311 (453)
T TIGR02367       240 DYLGKLEREITKFFVDRGFLEIKSPILIPLEY-VERMGIDNDT--ELSKQIFRV-----DKNLCLRPMLAPTLYNYLRKL  311 (453)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEECCCCCCCHHH-HHHCCCCCCH--HHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHH
T ss_conf             67546766676665312402323631010568-8650776402--566666644-----100101210005689999998


Q ss_pred             --C-CCEEEEEECCCCCCCCCC-CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             --3-631225410576474544-213781002005786178668999889999999970888662645423889852661
Q gi|254780317|r  195 --Q-DLPIKVIVPGKTYRRDSD-STHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSF  270 (366)
Q Consensus       195 --~-~pP~~~~~~GrvyR~d~D-~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs~  270 (366)
T Consensus       312 dr~lP~Pik~fe~GPCyrkesdGkehleeftm~nfCqmGsGCtrenle~~i~~fl~~l-~i-d--f~-------ivGds-  379 (453)
T TIGR02367       312 DRILPDPIKVFEVGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEALIKEFLDYL-EI-D--FK-------IVGDS-  379 (453)
T ss_pred             HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-CC-C--EE-------EECCE-
T ss_conf             7537896479860675243565335666666555431478732677999999988761-54-2--47-------85242-


Q ss_pred             EEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHH-HHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHH
Q ss_conf             03678750588042246883489845756388899-8569880003799631344699799738970587
Q gi|254780317|r  271 EVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVL-RGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVRE  339 (366)
Q Consensus       271 Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl-~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~  339 (366)
T Consensus       380 -----CmvyGdtld~mh--Gdlels-savvGP~~ldreWGidkP-Wi--GaGfGlerllkv~h~fknikr  438 (453)
T TIGR02367       380 -----CMVYGDTLDVMH--GDLELS-SAVVGPVSLDREWGIDKP-WI--GAGFGLERLLKVKHDFKNIKR  438 (453)
T ss_pred             -----EEEECCHHEEEE--CCHHHC-CEEECCCCCCCCCCCCCC-CC--CCCHHHHHHHHHHHHHHHHHH
T ss_conf             -----465335010001--320000-002236322301378887-21--253236788877632345545