HHsearch alignment for GI: 254780317 and conserved domain: cd00669
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.93 E-value=1.7e-08 Score=83.12 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH--HHHHHCC
Q ss_conf 99999999999873987623723415889888618988773316331277505666556322446763055--5543036
Q gi|254780317|r 119 TQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQI--RVMESQD 196 (366)
Q Consensus 119 tqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQi--R~m~~~~ 196 (366)
T Consensus 5 s~i~~~iR~ff~~~~f~EV~TP~l~~~---------~~~~~~----~~f~~~~~~~~~~~~L--~~Spel~~k~ll~~g- 68 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKI---------TGGAGA----RPFLVKYNALGLDYYL--RISPQLFKKRLMVGG- 68 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEECC---------CCCCCC----CEEEEECCCCCCEEEE--CCCHHHHHHHHHHCC-
T ss_conf 999999999999889899879853057---------898767----4257313789940773--438899999998658-
Q ss_pred CEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 3122541057647454-4213781002005786178668999889999999970
Q gi|254780317|r 197 LPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFF 249 (366)
Q Consensus 197 pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~f 249 (366)
T Consensus 69 -~~~if~i~~~FR~e~~~~rH~~EFtmlE~y~~~~--d~~~~m~~~e~li~~~~ 119 (269)
T cd00669 69 -LDRVFEINRNFRNEDLRARHQPEFTMMDLEMAFA--DYEDVIELTERLVRHLA 119 (269)
T ss_pred -CCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
T ss_conf -8867998462107898655434877578751489--99999999999999999