HHsearch alignment for GI: 254780317 and conserved domain: cd00775
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.85 E-value=3.1e-08 Score=81.22 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCC-------CCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 38999999999999873987623723415889888618988773316-------33127750566655632244676305
Q gi|254780317|r 116 HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQ-------MHDTFFVPGIAGGKHKLLRTHTSPVQ 188 (366)
Q Consensus 116 HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARd-------mqDTFyl~~~~~~~~~lLRthTS~vQ 188 (366)
T Consensus 9 ~~Rs~i~~~iR~ff~~~gF~Ev~TPiL~~~---------~~g~~~~~f~~~~~~~~~~~yL-------------~qSpQl 66 (329)
T cd00775 9 IVRSKIISYIRKFLDDRGFLEVETPMLQPI---------AGGAAARPFITHHNALDMDLYL-------------RIAPEL 66 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCC---------CCCCCCCCEEECCCCCCCCCCC-------------CCCHHH
T ss_conf 999999999999999889889979865566---------8875675313224467867230-------------689899
Q ss_pred HHHH-HHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 5554-30363122541057647454-4213781002005786178668999889999999970
Q gi|254780317|r 189 IRVM-ESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFF 249 (366)
Q Consensus 189 iR~m-~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~f 249 (366)
T Consensus 67 ~~q~l~~~g~-~rvfqI~p~FR~E~~~~rHl~EFtmle~E~~f--~d~~dvm~~~E~li~~i~ 126 (329)
T cd00775 67 YLKRLIVGGF-ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY--ADYNDMMDLTEDLFSGLV 126 (329)
T ss_pred HHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 9999985677-76799810224799997747345634577744--799999999999999999