>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.

Probab=99.23 E-value=3.5e-10 Score=95.41 Aligned_cols=202 Identities=22% Similarity=0.314 Sum_probs=115.2 Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH-HHHHHCCC Q ss_conf 99999999999873987623723415889888618988773316331277505666556322446763055-55430363 Q gi|254780317|r 119 TQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQI-RVMESQDL 197 (366) Q Consensus 119 tqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQi-R~m~~~~p 197 (366) T Consensus 5 s~i~~~iR~ff~~~gflEV~TPiL~~--------~~~eg--a~~----f~~~~~-~~~~~~~~L~~Spel~~k~l~~~g- 68 (280) T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTK--------STPEG--ARD----FLVPSR-LHPGKFYALPQSPQLFKQLLMVSG- 68 (280) T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCC--------CCCCC--CCC----CEECCC-CCCCCCCCCCCCHHHHHHHHHHCC- T ss_conf 99999999999988989987981068--------78776--766----442441-688760368879899999998568- Q ss_pred EEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH----CCCCCCEE---------------- Q ss_conf 122541057647454-421378100200578617866899988999999997----08886626---------------- Q gi|254780317|r 198 PIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF----FEVSSLQM---------------- 256 (366) Q Consensus 198 P~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~----fg~~~~~~---------------- 256 (366) T Consensus 69 ~~rvf~i~~~FR~E~~~~~h~~EFtmLE~e~~~~--~~~d~m~~~E~li~~i~~~~~~~-~~~~~~~rity~ea~~~~g~ 145 (280) T cd00777 69 FDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFV--DQEDIMSLIEGLLKYVFKEVLGV-ELTTPFPRMTYAEAMERYGF 145 (280) T ss_pred CCCCEEEECEECCCCCCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEHHHHHHHHCC T ss_conf 7775798451747888876634776234422688--89999999999999999998198-77999757768899998689 Q ss_pred ------------------EEEECCCCCCCCCCEEEEEEECCC-CEEEE---CCCCCEEEEECCCC--CCHHHH----HHC Q ss_conf ------------------454238898526610367875058-80422---46883489845756--388899----856 Q gi|254780317|r 257 ------------------RFRPSFFPFTEPSFEVDVRCSFSD-GIIKF---DEGTEWMEILGCGM--VDPRVL----RGV 308 (366) Q Consensus 257 ------------------r~rp~~fPftePs~Evdv~~~~~~-~~~~~---~~~~~WiEi~g~Gm--~~p~vl----~~~ 308 (366) T Consensus 146 ~~~~~~d~~~~~~~~~~~~~~~~~~pf~~p~~~~-~~~~~~~p~~~~~~~fdl~~~G~El~nG~~r~~d~~~~~~~~~~~ 224 (280) T cd00777 146 KFLWIVDFPLFEWDEEEGRLVSAHHPFTAPKEED-LDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEIL 224 (280) T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHH-HHHHHCCCHHHHHHHHCCCCCCEEECCCCCEECCHHHHHHHHHHC T ss_conf 7331135753346244255222207734782441-677633802456777413568644235310227999999999985 Q ss_pred CCCCCC-------------E---EEEEEECCHHHHHHHHCCCCCHHHH Q ss_conf 988000-------------3---7996313446997997389705876 Q gi|254780317|r 309 GIDPDI-------------Y---QGFAWGMGLDRIAMLKYGMPDVREF 340 (366) Q Consensus 309 g~d~~~-------------~---~g~AfG~G~eRlaml~~gi~diR~~ 340 (366) T Consensus 225 ~~~~~~~~~~~~~~l~a~~~G~pP~~G~glGiDRLvm~l~g~~~Irdv 272 (280) T cd00777 225 GLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDV 272 (280) T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCHHEE T ss_conf 989667788899999997669998743515899999999289828707

HHsearch alignment for GI: 254780317 and conserved domain: cd00777