HHsearch alignment for GI: 254780317 and conserved domain: pfam00152
>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=99.03 E-value=3.6e-09 Score=88.01 Aligned_cols=134 Identities=17% Similarity=0.250 Sum_probs=82.4
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEEC
Q ss_conf 67654310000011232122674238999999999999873987623723415889888618988773316331277505
Q gi|254780317|r 92 EQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPG 171 (366)
Q Consensus 92 ~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~ 171 (366)
T Consensus 4 ~r~~~R~ldlr~~~-----~~~~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~---------~~e~~a----~~F~~~~ 65 (341)
T pfam00152 4 TRLKYRYLDLRRPK-----MQANLKLRSKIIRAIREFLDERGFLEVETPILTKS---------TPEGGA----RDFLVPK 65 (341)
T ss_pred HHHCCEEEEECCHH-----HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC---------CCCCCC----CEEEECC
T ss_conf 32247013414866-----89999999999999999999889899879820055---------898777----6645026
Q ss_pred CCCCCCCCCCCCCCCHHHHH-HHHCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 66655632244676305555-430363122541057647454--421378100200578617866899988999999997
Q gi|254780317|r 172 IAGGKHKLLRTHTSPVQIRV-MESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248 (366)
Q Consensus 172 ~~~~~~~lLRthTS~vQiR~-m~~~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~ 248 (366)
T Consensus 66 ~~-~~~~yL--~~Spel~~k~ll~~g-~~rVfei~~~FR~E~~~t~rH~~EFtmlE~y~a~~--d~~d~m~~~E~li~~i 139 (341)
T pfam00152 66 FY-AKEAYL--PQSPQLYKQLLMVAG-FDRVFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFV--DYEDVMDLTEDLIKYV 139 (341)
T ss_pred CC-CCCEEE--CCCHHHHHHHHHHCC-CCCCEEEECHHCCCCCCCCCCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
T ss_conf 78-982340--548899999998658-87637972320279898865507788776755359--9999999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780317|r 249 F 249 (366)
Q Consensus 249 f 249 (366)
T Consensus 140 ~ 140 (341)
T pfam00152 140 F 140 (341)
T ss_pred H
T ss_conf 9