HHsearch alignment for GI: 254780317 and conserved domain: pfam00587
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=97.99 E-value=0.00013 Score=54.67 Aligned_cols=125 Identities=15% Similarity=0.243 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 9999999999987398762372341588988861898877331633127750566655632244676305555430----
Q gi|254780317|r 119 TQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES---- 194 (366)
Q Consensus 119 tqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~---- 194 (366)
T Consensus 3 ~~l~~~~~~~~~~~G~~~i~tP~l~~~----~~~~~-sg~~~~~~~~my~~~d~-~~~~l~Lrp~~~~~~~~~~~~~~~~ 76 (170)
T pfam00587 3 NALENFIRDLFKRYGYQEVDTPILEPK----ELWEG-SGHWDDYFDEMYRFKDR-GGEELYLRPTAEVGITRLFKNEILS 76 (170)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEH----HHHHH-CCCCCCCHHHEEEEECC-CCCEEEEECCCCHHHHHHHHHHCCC
T ss_conf 999999999999859989999917567----89834-47765575312567358-9976887325745888998862003
Q ss_pred -CCCEEEEEECCCCCCCCC-CC---CCCCCCCCCCEEEECCC----CCHHHHHHHHHHHHHHHCC
Q ss_conf -363122541057647454-42---13781002005786178----6689998899999999708
Q gi|254780317|r 195 -QDLPIKVIVPGKTYRRDS-DS---THSPMFHQIEGLVVSDS----ATIANLRWVLESFCKSFFE 250 (366)
Q Consensus 195 -~~pP~~~~~~GrvyR~d~-D~---tH~~~FhQ~egl~v~~~----i~~~~lk~~l~~~~~~~fg 250 (366)
T Consensus 77 ~~~lP~r~~~~~~~fR~E~~~~~Gl~R~reF~q~d~~~~~~~e~s~~~~~e~~~~~~~~~~~l-g 140 (170)
T pfam00587 77 YRDLPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEIFGTPEQSEEEDEELLKLAEEILQDL-G 140 (170)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 235860133065300677776667743678898047999670042999999999999999987-9