HHsearch alignment for GI: 254780317 and conserved domain: pfam01409
>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=100.00 E-value=0 Score=772.74 Aligned_cols=241 Identities=51% Similarity=0.970 Sum_probs=231.6
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 10000011232122674238999999999999873987623723415889888618988773316331277505666556
Q gi|254780317|r 98 SVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKH 177 (366)
Q Consensus 98 ~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~ 177 (366)
T Consensus 1 ~~Dvtlp--~~~~~~G~~HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~~~~~~~ 78 (243)
T pfam01409 1 PYDVTLP--GRRIEPGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKKPLKARR 78 (243)
T ss_pred CCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 9663168--98988998585999999999999877986876983564277777557898898767676034336666768
Q ss_pred CCCCCCCCCHHHHHH-HHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 322446763055554-30363122541057647454-4213781002005786178668999889999999970888662
Q gi|254780317|r 178 KLLRTHTSPVQIRVM-ESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQ 255 (366)
Q Consensus 178 ~lLRthTS~vQiR~m-~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~ 255 (366)
T Consensus 79 ~vLRtHTS~~q~r~l~~~~~~p~r~~~~grvyR~d~~DatH~~~FhQ~Eg~vvd~~it~~~Lk~~l~~~~~~lfg-~~~~ 157 (243)
T pfam01409 79 LLLRTHTTPVQARTLAEKNKPPIKIFSIGRVFRRDQVDATHLPEFHQVEGLVVDENVSFADLKGVLEEFLRKFFG-FEVK 157 (243)
T ss_pred EEECCCCCHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCE
T ss_conf 657687988999999742799848981431332588984315310575578965777899999999999999739-9737
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCC
Q ss_conf 64542388985266103678750588042246883489845756388899856988000379963134469979973897
Q gi|254780317|r 256 MRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMP 335 (366)
Q Consensus 256 ~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~ 335 (366)
T Consensus 158 ~R~rp~yFPFTePS~Evdv~~---------~~~~~WlEi~G~Gmv~p~vl~~~gid-~~~~g~AfG~GlERlaMl~~gi~ 227 (243)
T pfam01409 158 VRFRPSYFPFTEPSAEVDVYC---------CKGGGWIEIGGAGMVHPNVLEAVGID-EDYPGFAFGLGVERLAMLKYGID 227 (243)
T ss_pred EEECCCCCCCCCCCCEEEEEE---------ECCCCEEEEEECCCCCHHHHHHCCCC-CCCEEEEEEECHHHHHHHHCCCC
T ss_conf 986788699999861799999---------64997258750366678899866989-89769998534889999982997
Q ss_pred CHHHHHHCCHHHHHHC
Q ss_conf 0587663588888744
Q gi|254780317|r 336 DVREFFGADVRWIEHY 351 (366)
Q Consensus 336 diR~~~~~d~rfl~qf 351 (366)
T Consensus 228 DIR~~~~~D~rfL~qf 243 (243)
T pfam01409 228 DIRDLYENDLRFLRQF 243 (243)
T ss_pred HHHHHHHCCHHHHHCC
T ss_conf 7898762676677549