HHsearch alignment for GI: 254780317 and conserved domain: pfam01409

>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=100.00  E-value=0  Score=772.74  Aligned_cols=241  Identities=51%  Similarity=0.970  Sum_probs=231.6

Q ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             10000011232122674238999999999999873987623723415889888618988773316331277505666556
Q gi|254780317|r   98 SVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKH  177 (366)
Q Consensus        98 ~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~  177 (366)
T Consensus         1 ~~Dvtlp--~~~~~~G~~HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~~~~~~~   78 (243)
T pfam01409         1 PYDVTLP--GRRIEPGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKKPLKARR   78 (243)
T ss_pred             CCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             9663168--98988998585999999999999877986876983564277777557898898767676034336666768


Q ss_pred             CCCCCCCCCHHHHHH-HHCCCEEEEEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             322446763055554-30363122541057647454-4213781002005786178668999889999999970888662
Q gi|254780317|r  178 KLLRTHTSPVQIRVM-ESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQ  255 (366)
Q Consensus       178 ~lLRthTS~vQiR~m-~~~~pP~~~~~~GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~  255 (366)
T Consensus        79 ~vLRtHTS~~q~r~l~~~~~~p~r~~~~grvyR~d~~DatH~~~FhQ~Eg~vvd~~it~~~Lk~~l~~~~~~lfg-~~~~  157 (243)
T pfam01409        79 LLLRTHTTPVQARTLAEKNKPPIKIFSIGRVFRRDQVDATHLPEFHQVEGLVVDENVSFADLKGVLEEFLRKFFG-FEVK  157 (243)
T ss_pred             EEECCCCCHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCE
T ss_conf             657687988999999742799848981431332588984315310575578965777899999999999999739-9737


Q ss_pred             EEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCC
Q ss_conf             64542388985266103678750588042246883489845756388899856988000379963134469979973897
Q gi|254780317|r  256 MRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMP  335 (366)
Q Consensus       256 ~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~  335 (366)
T Consensus       158 ~R~rp~yFPFTePS~Evdv~~---------~~~~~WlEi~G~Gmv~p~vl~~~gid-~~~~g~AfG~GlERlaMl~~gi~  227 (243)
T pfam01409       158 VRFRPSYFPFTEPSAEVDVYC---------CKGGGWIEIGGAGMVHPNVLEAVGID-EDYPGFAFGLGVERLAMLKYGID  227 (243)
T ss_pred             EEECCCCCCCCCCCCEEEEEE---------ECCCCEEEEEECCCCCHHHHHHCCCC-CCCEEEEEEECHHHHHHHHCCCC
T ss_conf             986788699999861799999---------64997258750366678899866989-89769998534889999982997


Q ss_pred             CHHHHHHCCHHHHHHC
Q ss_conf             0587663588888744
Q gi|254780317|r  336 DVREFFGADVRWIEHY  351 (366)
Q Consensus       336 diR~~~~~d~rfl~qf  351 (366)
T Consensus       228 DIR~~~~~D~rfL~qf  243 (243)
T pfam01409       228 DIRDLYENDLRFLRQF  243 (243)
T ss_pred             HHHHHHHCCHHHHHCC
T ss_conf             7898762676677549