HHsearch results for GI: 254780317 and protein with PDBid: 1g5h_A
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=91.44 E-value=0.47 Score=27.11 Aligned_cols=225 Identities=12% Similarity=0.021 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHCCCCHHH------HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99899999999980864068------999876158998899999999999999999999999999985676667654310
Q gi|254780317|r 26 TDMDSLNAIRVATLGRKGSI------SSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSV 99 (366)
Q Consensus 26 ~~~~eLe~lrv~~LGKKG~L------t~llK~Lk~Ls~EeKk~~Gk~iNelK~~Ie~~i~~kk~~L~~~~~~~kl~~E~i 99 (366)
.+.++|.++ ..|+|.+ .+....++.+-. .+|..--++|+.|.++--.. .. ..+-.-..+
T Consensus 22 ~~~~~~~~l----~krrgf~~~~~~~~~~~~~~~g~~~----dyGPlG~~lk~ni~~~W~~~--~v-----~~~~~~~~~ 86 (454)
T 1g5h_A 22 VAREALVDL----CRRRHFLSGTPQQLSTAALLSGCHA----RFGPLGVELRKNLASQWWSS--MV-----VFREQVFAV 86 (454)
T ss_dssp ---CHHHHH----HHHTTSBCCCGGGGSHHHHHHCCSC----CBCHHHHHHHHHHHHHHHHH--HT-----TTCTTEEEC
T ss_pred CCHHHHHHH----HHCCCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHH--HH-----HCCCCEEEE
T ss_conf 479999999----8638871567666753011122167----55807899999999999999--85-----358988875
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 00001123212267423899999999999987398762372341588988861898877331633127750566655632
Q gi|254780317|r 100 DVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKL 179 (366)
Q Consensus 100 DVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~l 179 (366)
|-+.|. .-...|+.. .|..++ ...+=+.|+ ..+|.+.|.-||.-.. .....-
T Consensus 87 ds~~~~--~~~~~~~~~----------------~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~y 138 (454)
T 1g5h_A 87 DSLHQE--PGSSQPRDS----------------AFRLVS------PESIREILQ--DREPSKEQLVAFLENL--LKTSGK 138 (454)
T ss_dssp CCCSEE--CCCCSSCCC----------------CCEEEC------HHHHHHHHC--C---CHHHHHHHHHHH--HHHSCE
T ss_pred CCCCCC--CCCCCCCCC----------------CCCCCC------CCCCCCCCC--CCCCCHHHHHHHCCCC--CCCCCC
T ss_conf 456888--786776335----------------243323------353210135--6665215555202677--664542
Q ss_pred CCCCCCCHHH----HHHHH--CCCEEEEEECCCCCCCCC---CC----CCCCCCCCCCEE-EECCCC---CHHHHHHHHH
Q ss_conf 2446763055----55430--363122541057647454---42----137810020057-861786---6899988999
Q gi|254780317|r 180 LRTHTSPVQI----RVMES--QDLPIKVIVPGKTYRRDS---DS----THSPMFHQIEGL-VVSDSA---TIANLRWVLE 242 (366)
Q Consensus 180 LRthTS~vQi----R~m~~--~~pP~~~~~~GrvyR~d~---D~----tH~~~FhQ~egl-~v~~~i---~~~~lk~~l~ 242 (366)
||.-|-.... +.+.. .+.|+++.-+|++||++. -. ...-+|.|.|.- .++.+- .+........
T Consensus 139 LRPETaQgifvnF~n~~~~s~kkLPfgiaQIGk~FR~E~nEi~PR~GL~R~REF~q~D~e~F~~pe~~~~~~~~~~~~~~ 218 (454)
T 1g5h_A 139 LRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRL 218 (454)
T ss_dssp ECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHEEHHCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 37301057999999999842678885555530222477677668767760213311027668774255899999999999
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHH
Q ss_conf 999997088866264542388985266103678750588042246883489845756388899
Q gi|254780317|r 243 SFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVL 305 (366)
Q Consensus 243 ~~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl 305 (366)
.+++. +|...-.+|++...-.+.. ...|+.+. -.-+|.|+.|.--....-+
T Consensus 219 ~~~~~-lGi~~~~~r~~~~~~~~~~--~~~d~~~~---------~~~g~~E~~g~~~r~~~dl 269 (454)
T 1g5h_A 219 LWWRK-FAMSPSNFSSADCQDELGR--KGSKLYYS---------FPWGKEPIETLWNLGDQEL 269 (454)
T ss_dssp HHHHT-TCSSGGGEEEEEEECTTSC--EEEEEEEE---------ETTEEEEEEEEEEEESHHH
T ss_pred HHHHH-HCCCHHHHEECCCCCCCCC--CHHHHHHH---------HHHHHHHHHHHHCCCCCCH
T ss_conf 99998-4888557212134200143--23667665---------4655898888756865100