HHsearch results for GI: 254780317 and protein with PDBid: 1nj1_A
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=96.89 E-value=0.0091 Score=39.62 Aligned_cols=216 Identities=15% Similarity=0.126 Sum_probs=102.6
Q ss_pred HHHCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCC---CCCCCCCEEEEE
Q ss_conf 43100000112321226--7423899999999999987398762372341588988861898877---331633127750
Q gi|254780317|r 96 SQSVDVSLPVFSSPCHR--GRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDH---PARQMHDTFFVP 170 (366)
Q Consensus 96 ~E~iDVTLP~~~~~~~~--G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~H---PARdmqDTFyl~ 170 (366)
.+-+|-+-|+.|-+... |. .....+.+-+++++ .-||+.+.-|-+... +.|.--..| =+-+| |.+.
T Consensus 51 a~l~d~~~~vkG~~~~lP~G~-~i~~~i~~~~r~~~-~~G~~ev~tP~l~~~----~~L~~~SGh~~~f~eem---f~v~ 121 (501)
T 1nj1_A 51 AEIIDQRYPVKGMHVWMPHGF-MIRKNTLKILRRIL-DRDHEEVLFPLLVPE----DELAKEAIHVKGFEDEV---YWVT 121 (501)
T ss_dssp TTCEECCCSSTTCCEECHHHH-HHHHHHHHHHHHHH-TTTCEECCCCSEEEH----HHHTTSHHHHHHTTTTC---CEEE
T ss_pred CCCCCCCCCCCEEEEECCCHH-HHHHHHHHHHHHHH-HCCCEEEECCCCCCH----HHHHHHHCCCCCCCCCC---EEEE
T ss_conf 088233899971599770399-99999999999999-859989978864057----89866645655446477---2784
Q ss_pred ---CCCCCCCCCCCCCCCCHHHHHHH----H-CCCEEEEEECCCCCCCCC-CCC---CCCCCCCCCEEE-ECC--CCCHH
Q ss_conf ---56665563224467630555543----0-363122541057647454-421---378100200578-617--86689
Q gi|254780317|r 171 ---GIAGGKHKLLRTHTSPVQIRVME----S-QDLPIKVIVPGKTYRRDS-DST---HSPMFHQIEGLV-VSD--SATIA 235 (366)
Q Consensus 171 ---~~~~~~~~lLRthTS~vQiR~m~----~-~~pP~~~~~~GrvyR~d~-D~t---H~~~FhQ~egl~-v~~--~i~~~ 235 (366)
....++...||.-+.+....... + .+.|+|+...|.|||+|. ... ...+|||++... +.. +-.-.
T Consensus 122 ~~~~~~~~~~~~LrPt~e~~~~~~~~~~~~SyrdLPlri~q~g~~fR~E~~~~~gllR~REF~q~ed~~~~~~~~e~~~~ 201 (501)
T 1nj1_A 122 HGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEE 201 (501)
T ss_dssp EETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHH
T ss_conf 16754567606871378888999996320136679868887621212540015770699999985000346799899999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC--CEEEEEEECCCCEEEECCCCCEEEEECC---CCCCHHHHHHCCC
Q ss_conf 9988999999997088866264542388985266--1036787505880422468834898457---5638889985698
Q gi|254780317|r 236 NLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPS--FEVDVRCSFSDGIIKFDEGTEWMEILGC---GMVDPRVLRGVGI 310 (366)
Q Consensus 236 ~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs--~Evdv~~~~~~~~~~~~~~~~WiEi~g~---Gm~~p~vl~~~g~ 310 (366)
... .+..+++.+|+ +..+.++.+..|.-+.. ++-.+.+.. .+..+..+|++-+ |--.+..+..--.
T Consensus 202 e~~-~~~~~y~~~~~--~l~i~~~~~~~~~~d~~~ga~~~~~~e~------~~~~G~~iev~t~~~Lg~~~s~~f~i~y~ 272 (501)
T 1nj1_A 202 QVE-RAVEIYKEFFN--SLGIPYLITRRPPWDKFPGSEYTVAFDT------LMPDGKTLQIGTVHNLGQTFARTFEIKFE 272 (501)
T ss_dssp HHH-HHHHHHHHHHH--HHTCCCEEEECCTTTSCTTCSEEEEEEE------ECTTSCEEEEEEEEEEETHHHHHHTCEEE
T ss_pred HHH-HHHHHHHHHHH--HCCCCEEECCCCCCCCCCCCHHHCCHHH------HHCCCCCEEEECEECCCCHHHHHCCCCCC
T ss_conf 999-99999999986--4151301101246554556232000012------22037601573301055457675034302
Q ss_pred CCCC----EEEEEEECCHHHHHHH
Q ss_conf 8000----3799631344699799
Q gi|254780317|r 311 DPDI----YQGFAWGMGLDRIAML 330 (366)
Q Consensus 311 d~~~----~~g~AfG~G~eRlaml 330 (366)
|++. ....-||++. |+...
T Consensus 273 d~~g~~~~v~~~~~G~~~-R~i~~ 295 (501)
T 1nj1_A 273 TPEGDHEYVHQTCYGLSD-RVIAS 295 (501)
T ss_dssp CTTSCEEECEEEEEEECT-HHHHH
T ss_pred CCCCCCEEEECCCHHHHH-HHHHH
T ss_conf 456863022011012544-36478