HHsearch results for GI: 254780317 and protein with PDBid: 1nj1_A

>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=96.89  E-value=0.0091  Score=39.62  Aligned_cols=216  Identities=15%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             HHHCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCC---CCCCCCCEEEEE
Q ss_conf             43100000112321226--7423899999999999987398762372341588988861898877---331633127750
Q gi|254780317|r   96 SQSVDVSLPVFSSPCHR--GRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDH---PARQMHDTFFVP  170 (366)
Q Consensus        96 ~E~iDVTLP~~~~~~~~--G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~H---PARdmqDTFyl~  170 (366)
                      .+-+|-+-|+.|-+...  |. .....+.+-+++++ .-||+.+.-|-+...    +.|.--..|   =+-+|   |.+.
T Consensus        51 a~l~d~~~~vkG~~~~lP~G~-~i~~~i~~~~r~~~-~~G~~ev~tP~l~~~----~~L~~~SGh~~~f~eem---f~v~  121 (501)
T 1nj1_A           51 AEIIDQRYPVKGMHVWMPHGF-MIRKNTLKILRRIL-DRDHEEVLFPLLVPE----DELAKEAIHVKGFEDEV---YWVT  121 (501)
T ss_dssp             TTCEECCCSSTTCCEECHHHH-HHHHHHHHHHHHHH-TTTCEECCCCSEEEH----HHHTTSHHHHHHTTTTC---CEEE
T ss_pred             CCCCCCCCCCCEEEEECCCHH-HHHHHHHHHHHHHH-HCCCEEEECCCCCCH----HHHHHHHCCCCCCCCCC---EEEE
T ss_conf             088233899971599770399-99999999999999-859989978864057----89866645655446477---2784


Q ss_pred             ---CCCCCCCCCCCCCCCCHHHHHHH----H-CCCEEEEEECCCCCCCCC-CCC---CCCCCCCCCEEE-ECC--CCCHH
Q ss_conf             ---56665563224467630555543----0-363122541057647454-421---378100200578-617--86689
Q gi|254780317|r  171 ---GIAGGKHKLLRTHTSPVQIRVME----S-QDLPIKVIVPGKTYRRDS-DST---HSPMFHQIEGLV-VSD--SATIA  235 (366)
Q Consensus       171 ---~~~~~~~~lLRthTS~vQiR~m~----~-~~pP~~~~~~GrvyR~d~-D~t---H~~~FhQ~egl~-v~~--~i~~~  235 (366)
                         ....++...||.-+.+.......    + .+.|+|+...|.|||+|. ...   ...+|||++... +..  +-.-.
T Consensus       122 ~~~~~~~~~~~~LrPt~e~~~~~~~~~~~~SyrdLPlri~q~g~~fR~E~~~~~gllR~REF~q~ed~~~~~~~~e~~~~  201 (501)
T 1nj1_A          122 HGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEE  201 (501)
T ss_dssp             EETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHH
T ss_conf             16754567606871378888999996320136679868887621212540015770699999985000346799899999


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC--CEEEEEEECCCCEEEECCCCCEEEEECC---CCCCHHHHHHCCC
Q ss_conf             9988999999997088866264542388985266--1036787505880422468834898457---5638889985698
Q gi|254780317|r  236 NLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPS--FEVDVRCSFSDGIIKFDEGTEWMEILGC---GMVDPRVLRGVGI  310 (366)
Q Consensus       236 ~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs--~Evdv~~~~~~~~~~~~~~~~WiEi~g~---Gm~~p~vl~~~g~  310 (366)
                      ... .+..+++.+|+  +..+.++.+..|.-+..  ++-.+.+..      .+..+..+|++-+   |--.+..+..--.
T Consensus       202 e~~-~~~~~y~~~~~--~l~i~~~~~~~~~~d~~~ga~~~~~~e~------~~~~G~~iev~t~~~Lg~~~s~~f~i~y~  272 (501)
T 1nj1_A          202 QVE-RAVEIYKEFFN--SLGIPYLITRRPPWDKFPGSEYTVAFDT------LMPDGKTLQIGTVHNLGQTFARTFEIKFE  272 (501)
T ss_dssp             HHH-HHHHHHHHHHH--HHTCCCEEEECCTTTSCTTCSEEEEEEE------ECTTSCEEEEEEEEEEETHHHHHHTCEEE
T ss_pred             HHH-HHHHHHHHHHH--HCCCCEEECCCCCCCCCCCCHHHCCHHH------HHCCCCCEEEECEECCCCHHHHHCCCCCC
T ss_conf             999-99999999986--4151301101246554556232000012------22037601573301055457675034302


Q ss_pred             CCCC----EEEEEEECCHHHHHHH
Q ss_conf             8000----3799631344699799
Q gi|254780317|r  311 DPDI----YQGFAWGMGLDRIAML  330 (366)
Q Consensus       311 d~~~----~~g~AfG~G~eRlaml  330 (366)
                      |++.    ....-||++. |+...
T Consensus       273 d~~g~~~~v~~~~~G~~~-R~i~~  295 (501)
T 1nj1_A          273 TPEGDHEYVHQTCYGLSD-RVIAS  295 (501)
T ss_dssp             CTTSCEEECEEEEEEECT-HHHHH
T ss_pred             CCCCCCEEEECCCHHHHH-HHHHH
T ss_conf             456863022011012544-36478