HHsearch results for GI: 254780317 and protein with PDBid: 1nyr_A
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=96.67 E-value=0.016 Score=37.91 Aligned_cols=138 Identities=12% Similarity=0.172 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEECH-HHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2389999999999998739876237234158-898886189887733163312775056665563224467630555543
Q gi|254780317|r 115 IHPVTQVIDEVTCIFMDMGFALEEGSDIETD-YYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVME 193 (366)
Q Consensus 115 ~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd-~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~ 193 (366)
......+.+-|++.+.+.||+.+.-|-+++. .|-- -.|=.--..+-||......++..+||+...+..++...
T Consensus 271 ~~i~~~le~~ir~~~~~~Gy~EV~tP~l~~~~Lw~~------SGh~~~y~~~m~~~~~~~~~e~~~LrP~~~~~~~~~~~ 344 (645)
T 1nyr_A 271 ATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKT------SGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYA 344 (645)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHH------HTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHC------CCCCCEECCCEEEEEECCCCCCEECCCCCCCHHHHHHH
T ss_conf 999999999999999860854621642146556531------56634111420256641666424045656431457777
Q ss_pred HC-----CCEEEEEECCCCCCCCC-CC----CCCCCCCCCCEEEECCCCC----HHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 03-----63122541057647454-42----1378100200578617866----89998899999999708886626454
Q gi|254780317|r 194 SQ-----DLPIKVIVPGKTYRRDS-DS----THSPMFHQIEGLVVSDSAT----IANLRWVLESFCKSFFEVSSLQMRFR 259 (366)
Q Consensus 194 ~~-----~pP~~~~~~GrvyR~d~-D~----tH~~~FhQ~egl~v~~~i~----~~~lk~~l~~~~~~~fg~~~~~~r~r 259 (366)
++ +.|+|+.-+|.|||+|. -+ ...-+|+|-|+=+....-. +......+..+++. ||.+...++..
T Consensus 345 ~~~~SyrdLPlrl~qig~~fR~E~~~~~~gl~R~ReF~q~d~h~F~~~~q~~~e~~~~~~~~~~vy~~-~G~~~~~~~~~ 423 (645)
T 1nyr_A 345 NKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKD-FGFEDYSFRLS 423 (645)
T ss_dssp TSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHH-TTCCCEEEEEE
T ss_pred HHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEE
T ss_conf 53203456886424540044466544566655123489726358707077999999999999999999-68973477874