HHsearch results for GI: 254780317 and protein with PDBid: 2dq0_A
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.03 E-value=0.00089 Score=47.03 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH------HH
Q ss_conf 999999999873987623723415889888618988773316331277505666556322446763055554------30
Q gi|254780317|r 121 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM------ES 194 (366)
Q Consensus 121 vi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m------~~ 194 (366)
.++-..|...+-||+.+.-|.+-...--+..=..|. ...|.|-+++ + .+-=..||-|.+=.| ..
T Consensus 199 Li~f~ld~~~~~Gy~~v~pP~iV~~~~~~gtGqlp~-----f~~~~Y~i~~----~-dl~Li~TaEvpL~~~~~~eil~~ 268 (455)
T 2dq0_A 199 LIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFED-----FEDVIYKVED----E-DLYLIPTAEHPLAGMHANEILDG 268 (455)
T ss_dssp HHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTH-----HHHTCCBBTT----S-SCEECSSTHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCHHHHHHCCCCCC-----CHHCEEEECC----C-CEEECCCCCCCHHHHHHCCCCCH
T ss_conf 999999750001654623861102788734268987-----6010478559----9-75743644320444440132578
Q ss_pred CCCEEEEEECCCCCCCCC-----CC---CCCCCCCCCCEEEECCC-CC---HHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 363122541057647454-----42---13781002005786178-66---89998899999999708886626454238
Q gi|254780317|r 195 QDLPIKVIVPGKTYRRDS-----DS---THSPMFHQIEGLVVSDS-AT---IANLRWVLESFCKSFFEVSSLQMRFRPSF 262 (366)
Q Consensus 195 ~~pP~~~~~~GrvyR~d~-----D~---tH~~~FhQ~egl~v~~~-i~---~~~lk~~l~~~~~~~fg~~~~~~r~rp~~ 262 (366)
.+.|+|+++.++|||++. |. -+.|+|+-||-+++-+. -| +..|....+.+++.+ ++-||--.
T Consensus 269 ~~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~s~~~~e~~~~~~~~i~~~L------~lpyrvv~ 342 (455)
T 2dq0_A 269 KDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQEL------EIPYRVVN 342 (455)
T ss_dssp TTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC------CCCEEEEE
T ss_conf 778920246589788655557876401220122142689983489731999999999999999975------99658988
Q ss_pred CCCCCC----CCEEEEEEECCCCEEEECCCCCEEEEECCCCCCHHHHHHCCC---C---CC---CEEEEEEECCHHHHHH
Q ss_conf 898526----610367875058804224688348984575638889985698---8---00---0379963134469979
Q gi|254780317|r 263 FPFTEP----SFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGI---D---PD---IYQGFAWGMGLDRIAM 329 (366)
Q Consensus 263 fPfteP----s~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~---d---~~---~~~g~AfG~G~eRlam 329 (366)
-|=.+= +--+||..|..+ .+.|.||.-|--..-=.-|-.+| + .. .++--+=|+-+.|+.-
T Consensus 343 ~~s~dlg~~a~~k~DiE~w~P~-------~~~y~EvsS~Snc~DyQsRRl~iry~~~~~~~~~~~HtlNgt~lav~R~l~ 415 (455)
T 2dq0_A 343 ICTGDLGYVAAKKYDIEAWMPG-------QGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIV 415 (455)
T ss_dssp CCGGGSCSSCSEEEEEEEEETT-------TTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEHHHHHH
T ss_pred ECCCCCCCCCCEEEEEEEEECC-------CCCEEEEEEECCCCCHHHHCCCCEECCCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 1376678771218999988557-------786245746615435766133445126899963554533064018878999