HHsearch results for GI: 254780317 and protein with PDBid: 2du3_A
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00 E-value=0 Score=700.14 Aligned_cols=249 Identities=19% Similarity=0.312 Sum_probs=230.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHH-----------HHHHHHCCCCCCC--
Q ss_conf 765431000001123212267423899999999999987398762372341588-----------9888618988773--
Q gi|254780317|r 93 QISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDY-----------YNFAALNFPDDHP-- 159 (366)
Q Consensus 93 kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~-----------~NFdaLNiP~~HP-- 159 (366)
.+..+.+|+|+|+ ++...|++||+++++++|++||.+|||++++||+||+|+ |||||||+|++||
T Consensus 26 ~l~~~~~d~~~P~--~~~~~G~~HPl~~~ieeir~if~~MGF~E~~gP~Ie~e~~i~~qf~~~Af~NFDaLf~p~~hP~~ 103 (534)
T 2du3_A 26 ILAERSPNELYPR--VGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKP 103 (534)
T ss_dssp GSCCCCGGGSTTS--SCCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHHHHTTSCEEEECCCC
T ss_pred HCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 3244667756889--89888871869999999999999789879567813002001012343021334544276338875
Q ss_pred ---------------------CCCCCCEEEEECC--------------------------------------CCCCCCCC
Q ss_conf ---------------------3163312775056--------------------------------------66556322
Q gi|254780317|r 160 ---------------------ARQMHDTFFVPGI--------------------------------------AGGKHKLL 180 (366)
Q Consensus 160 ---------------------ARdmqDTFyl~~~--------------------------------------~~~~~~lL 180 (366)
||+||||||+.+. ..+.++||
T Consensus 104 ~~~~s~~~~~~i~~~~~~~~pARdmqDTFy~~k~g~~d~ddL~~~i~~~~~~~~~~~~~~~~~~f~e~~~~~~~s~~~lL 183 (534)
T 2du3_A 104 NVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTL 183 (534)
T ss_dssp CTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCTTTTTCCCEEEEEEE
T ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 64432012110013444664334422024103666677201124454320246554434445556432334332300022
Q ss_pred CCCCCCHHHHHH----HHCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 446763055554----30363122541057647454--421378100200578617866899988999999997088866
Q gi|254780317|r 181 RTHTSPVQIRVM----ESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSL 254 (366)
Q Consensus 181 RthTS~vQiR~m----~~~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~ 254 (366)
|||||++|+|+| ++.+||+|+||||||||||+ |+||+|+|||+||++||++|||+||||+|+.|+++||| +++
T Consensus 184 RTHTS~~q~~~lr~l~~~~~~Piri~s~GrVyRrD~aiDatH~~~FhQvEGlvVd~~vs~~dLkg~L~~fl~~~f~-~~~ 262 (534)
T 2du3_A 184 RSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF-ENF 262 (534)
T ss_dssp CSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTC-CEE
T ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCC
T ss_conf 0356721699999997368998589615622235655654317410571048866988899999999999999768-775
Q ss_pred EEEEEECCCCCCCCCCEEEEEEECCCCE-EEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCC
Q ss_conf 2645423889852661036787505880-422468834898457563888998569880003799631344699799738
Q gi|254780317|r 255 QMRFRPSFFPFTEPSFEVDVRCSFSDGI-IKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYG 333 (366)
Q Consensus 255 ~~r~rp~~fPftePs~Evdv~~~~~~~~-~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~g 333 (366)
++|+||+||||||||+|+||+|..|.++ |.+|+++|||||+|||||||+||+++||| |+||||||||||||||+||
T Consensus 263 k~R~rpsyFPFtePs~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P~VL~~~GId---y~g~AfGlGlERLAML~yg 339 (534)
T 2du3_A 263 RFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYG 339 (534)
T ss_dssp EEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCC---SCEEEEEEEHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC---CCEEEEEECHHHHHHHHCC
T ss_conf 7974688799999953479999505886555575896699967746687888646989---8779986528899998719
Q ss_pred CCCHHHHHHCCHHH
Q ss_conf 97058766358888
Q gi|254780317|r 334 MPDVREFFGADVRW 347 (366)
Q Consensus 334 i~diR~~~~~d~rf 347 (366)
|+|||+||..|++.
T Consensus 340 I~DIR~Ly~p~~~~ 353 (534)
T 2du3_A 340 YDDVRKMVYPQIHG 353 (534)
T ss_dssp CSCHHHHHCTTTTT
T ss_pred CCHHHHHHCCCCCC
T ss_conf 96688751776661