HHsearch results for GI: 254780317 and protein with PDBid: 2du3_A

>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00  E-value=0  Score=700.14  Aligned_cols=249  Identities=19%  Similarity=0.312  Sum_probs=230.2

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEECHH-----------HHHHHHCCCCCCC--
Q ss_conf             765431000001123212267423899999999999987398762372341588-----------9888618988773--
Q gi|254780317|r   93 QISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDY-----------YNFAALNFPDDHP--  159 (366)
Q Consensus        93 kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~-----------~NFdaLNiP~~HP--  159 (366)
                      .+..+.+|+|+|+  ++...|++||+++++++|++||.+|||++++||+||+|+           |||||||+|++||  
T Consensus        26 ~l~~~~~d~~~P~--~~~~~G~~HPl~~~ieeir~if~~MGF~E~~gP~Ie~e~~i~~qf~~~Af~NFDaLf~p~~hP~~  103 (534)
T 2du3_A           26 ILAERSPNELYPR--VGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKP  103 (534)
T ss_dssp             GSCCCCGGGSTTS--SCCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHHHHTTSCEEEECCCC
T ss_pred             HCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             3244667756889--89888871869999999999999789879567813002001012343021334544276338875


Q ss_pred             ---------------------CCCCCCEEEEECC--------------------------------------CCCCCCCC
Q ss_conf             ---------------------3163312775056--------------------------------------66556322
Q gi|254780317|r  160 ---------------------ARQMHDTFFVPGI--------------------------------------AGGKHKLL  180 (366)
Q Consensus       160 ---------------------ARdmqDTFyl~~~--------------------------------------~~~~~~lL  180 (366)
                                           ||+||||||+.+.                                      ..+.++||
T Consensus       104 ~~~~s~~~~~~i~~~~~~~~pARdmqDTFy~~k~g~~d~ddL~~~i~~~~~~~~~~~~~~~~~~f~e~~~~~~~s~~~lL  183 (534)
T 2du3_A          104 NVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTL  183 (534)
T ss_dssp             CTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCTTTTTCCCEEEEEEE
T ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             64432012110013444664334422024103666677201124454320246554434445556432334332300022


Q ss_pred             CCCCCCHHHHHH----HHCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             446763055554----30363122541057647454--421378100200578617866899988999999997088866
Q gi|254780317|r  181 RTHTSPVQIRVM----ESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSL  254 (366)
Q Consensus       181 RthTS~vQiR~m----~~~~pP~~~~~~GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~  254 (366)
                      |||||++|+|+|    ++.+||+|+||||||||||+  |+||+|+|||+||++||++|||+||||+|+.|+++||| +++
T Consensus       184 RTHTS~~q~~~lr~l~~~~~~Piri~s~GrVyRrD~aiDatH~~~FhQvEGlvVd~~vs~~dLkg~L~~fl~~~f~-~~~  262 (534)
T 2du3_A          184 RSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF-ENF  262 (534)
T ss_dssp             CSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTC-CEE
T ss_pred             ECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCC
T ss_conf             0356721699999997368998589615622235655654317410571048866988899999999999999768-775


Q ss_pred             EEEEEECCCCCCCCCCEEEEEEECCCCE-EEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCC
Q ss_conf             2645423889852661036787505880-422468834898457563888998569880003799631344699799738
Q gi|254780317|r  255 QMRFRPSFFPFTEPSFEVDVRCSFSDGI-IKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYG  333 (366)
Q Consensus       255 ~~r~rp~~fPftePs~Evdv~~~~~~~~-~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~g  333 (366)
                      ++|+||+||||||||+|+||+|..|.++ |.+|+++|||||+|||||||+||+++|||   |+||||||||||||||+||
T Consensus       263 k~R~rpsyFPFtePs~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P~VL~~~GId---y~g~AfGlGlERLAML~yg  339 (534)
T 2du3_A          263 RFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYG  339 (534)
T ss_dssp             EEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCC---SCEEEEEEEHHHHHHHHTT
T ss_pred             EEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC---CCEEEEEECHHHHHHHHCC
T ss_conf             7974688799999953479999505886555575896699967746687888646989---8779986528899998719


Q ss_pred             CCCHHHHHHCCHHH
Q ss_conf             97058766358888
Q gi|254780317|r  334 MPDVREFFGADVRW  347 (366)
Q Consensus       334 i~diR~~~~~d~rf  347 (366)
                      |+|||+||..|++.
T Consensus       340 I~DIR~Ly~p~~~~  353 (534)
T 2du3_A          340 YDDVRKMVYPQIHG  353 (534)
T ss_dssp             CSCHHHHHCTTTTT
T ss_pred             CCHHHHHHCCCCCC
T ss_conf             96688751776661