HHsearch results for GI: 254780317 and protein with PDBid: 2du7_A
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=0 Score=659.57 Aligned_cols=271 Identities=19% Similarity=0.302 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999999999999999999999985676--6676543100000112321226742389999999999998739876237
Q gi|254780317|r 62 ARGAILNQLKVDISGKISARKDFIRNQLI--FEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEG 139 (366)
Q Consensus 62 ~~Gk~iNelK~~Ie~~i~~kk~~L~~~~~--~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~IF~~lGF~v~eG 139 (366)
--++..|++|.++++.++..++.++.+.. .+.++.+.+|+|+|+ ++...|++||+++++++|++||.+|||++++|
T Consensus 3 ~~~k~~~~~k~~~ee~~~~a~~~fe~aw~~~~~~lk~~~id~t~P~--~~~~~Gk~HPl~~~i~~Ir~if~~MGF~e~~g 80 (549)
T 2du7_A 3 LKHKRDDKMRFDIKKVLELAEKDFETAWRETRALIKDKHIDNKYPR--LKPVYGKPHPVMETIERLRQAYLRMGFEEMIN 80 (549)
T ss_dssp --------CCCCHHHHHTTSTTCCSSTTTSCCCSSCCCTTTTSSSS--SCCCCCCCCHHHHHHHHHHHHHHTTTCEECCC
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 2035566765479999999999899999986653145666535888--89888874869999999999999789889558
Q ss_pred CEEECHHH-----------HHHHHCCCCCCCCCCCCCE-------------------------EEEECC-----------
Q ss_conf 23415889-----------8886189887733163312-------------------------775056-----------
Q gi|254780317|r 140 SDIETDYY-----------NFAALNFPDDHPARQMHDT-------------------------FFVPGI----------- 172 (366)
Q Consensus 140 PEIEtd~~-----------NFdaLNiP~~HPARdmqDT-------------------------Fyl~~~----------- 172 (366)
|+||++|| |||+||+|++|||||++|| ||+...
T Consensus 81 P~Ie~e~~~~~~F~pe~h~NFD~Lf~P~dHPaRD~~ds~~~~~~i~~~~~~~~~~~~e~lqd~~~~~k~g~i~Gddl~~e 160 (549)
T 2du7_A 81 PVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFE 160 (549)
T ss_dssp CSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSC
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 84786440311137664532430079877888875654330011145444566116899999887602576676531012
Q ss_pred ---------------------------CCCCCCCCCCCCCCHHHHHH----HHCCCEEEEEECCCCCCCCC--CCCCCCC
Q ss_conf ---------------------------66556322446763055554----30363122541057647454--4213781
Q gi|254780317|r 173 ---------------------------AGGKHKLLRTHTSPVQIRVM----ESQDLPIKVIVPGKTYRRDS--DSTHSPM 219 (366)
Q Consensus 173 ---------------------------~~~~~~lLRthTS~vQiR~m----~~~~pP~~~~~~GrvyR~d~--D~tH~~~ 219 (366)
..+.+++||||||++|+|+| ++++||+|+||||||||||+ |+||+|+
T Consensus 161 i~~~l~~~~~~g~~~~~~~f~~~~~l~~~s~~llLRTHTS~~q~r~l~~l~e~~~~Pir~~s~GrVyRrD~i~D~tH~~~ 240 (549)
T 2du7_A 161 IAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMS 240 (549)
T ss_dssp CCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHCCC
T ss_conf 22102345333444333344422334432101141366871259999999852799805633665444555564211787
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCCC
Q ss_conf 00200578617866899988999999997088866264542388985266103678750588042246883489845756
Q gi|254780317|r 220 FHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGM 299 (366)
Q Consensus 220 FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~~~~~~~~~WiEi~g~Gm 299 (366)
|||+||++||+++||+|||++|+.|++++|+ .++++|++|+||||||||+|+||+|.. |++++||||+||||
T Consensus 241 FhQ~Eglvvd~~vt~~dLK~~L~~f~~~~~~-~~~k~R~~~syFPfTePs~EveV~~~~-------~~~g~WlEIlGcGm 312 (549)
T 2du7_A 241 YHSASCVVVGEDVSVDDGKVVAEGLLAQFGF-TKFKFKPDEKKSKYYTPETQTEVYAYH-------PKLGEWIEVATFGV 312 (549)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHGGGTC-CCCCCEECTTCCTTBCTTTCEEEEECC-------SSSSCSEEEEEEEE
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCEEEEEEEEE-------CCCCEEEEEECCCC
T ss_conf 7377768960787899999999999999779-883898788888999996578999970-------88981899957847
Q ss_pred CCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHCCH
Q ss_conf 3888998569880003799631344699799738970587663588
Q gi|254780317|r 300 VDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADV 345 (366)
Q Consensus 300 ~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~~~~~d~ 345 (366)
|||+||+++||| |+||||||||||||||+|||+|||+||..|+
T Consensus 313 v~P~VL~~~Gid---~~g~AfGlGlERLAMl~ygI~DIR~Ly~p~~ 355 (549)
T 2du7_A 313 YSPIALAKYNID---VPVMNLGLGVERLAMIIYGYEDVRAMVYPQF 355 (549)
T ss_dssp BCHHHHHHTTCC---SCEEEEEEBHHHHHHHHTTCSCSHHHHSSSS
T ss_pred CCHHHHHHCCCC---CCEEEEEECHHHHHHHHCCCCHHHHHHCCCC
T ss_conf 788999856979---8768987639999999729976776416755