HHsearch results for GI: 254780317 and protein with PDBid: 2odr_B
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=100.00 E-value=0 Score=520.04 Aligned_cols=274 Identities=19% Similarity=0.318 Sum_probs=225.7
Q ss_pred HHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999876158998-8999999999999999999999999999856766676543100000112321226742389999999
Q gi|254780317|r 46 SSLLKDLKNLDS-QQVSARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDE 124 (366)
Q Consensus 46 t~llK~Lk~Ls~-EeKk~~Gk~iNelK~~Ie~~i~~kk~~L~~~~~~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~e 124 (366)
+...++.|-.+. ..+-+.|......+..++.+..+ ..+.+..+.+|+++|. .....|++||+++++++
T Consensus 5 ~~~~~s~Gl~~d~ShrFer~~~~ela~ka~ErA~~~---------~~~i~~~~~id~~lPr--~~~~~Gk~HPl~~~iee 73 (648)
T 2odr_B 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIE---------TKDLIKAKKINESYPR--IKPVFGKTHPVNDTIEN 73 (648)
T ss_dssp ------------------------------------------------------CTTSGGG--CCCCCCBCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHH---------HHHHCCCCCCCCCCCC--CCCCCCCCCCHHHHHHH
T ss_conf 544435787830552201345677669999999996---------4443067756545898--88777672838999999
Q ss_pred HHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECC--------------------------------
Q ss_conf 999998739876237234158898886189887733163312775056--------------------------------
Q gi|254780317|r 125 VTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGI-------------------------------- 172 (366)
Q Consensus 125 I~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~-------------------------------- 172 (366)
|++||.+|||+++.||+|+++ ||||+||+|++||||| ||||++..
T Consensus 74 Ir~IL~rLGFee~~~p~Iv~~-wnfD~LfvP~~HPaRD--DtFyLe~DliEEVaRiyGYdnip~~~p~~~~~~~~~~~~~ 150 (648)
T 2odr_B 74 LRQAYLRMGFEEYINPVIVDE-RDIYKQFGPEAMAVLD--RCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKI 150 (648)
T ss_dssp HHHHHHHTTCEECCCCSEEEH-HHHHHHHGGGHHHHHH--TCEEEEBCCC------------------------------
T ss_pred HHHHHHHCCCEEEECCEEEEE-EECCCCCCCCCCCHHH--CCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 999999779879748837353-5053106898774420--7352147631232022452234312455554531013566
Q ss_pred --------------------------------------------CCCCCCCCCCCCCCH---HHHHHHHCC-CEEEEEEC
Q ss_conf --------------------------------------------665563224467630---555543036-31225410
Q gi|254780317|r 173 --------------------------------------------AGGKHKLLRTHTSPV---QIRVMESQD-LPIKVIVP 204 (366)
Q Consensus 173 --------------------------------------------~~~~~~lLRthTS~v---QiR~m~~~~-pP~~~~~~ 204 (366)
-.++..+||||||+. |++.+.+++ +|+|+|++
T Consensus 151 ~~~~k~r~~l~~~G~~Evitysfv~~~~~~~~~~~~~~v~l~NPisSe~~vLRTh~~~gll~~l~~n~~r~~~pirlFEi 230 (648)
T 2odr_B 151 LHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSI 230 (648)
T ss_dssp ---------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 66655302222034000321023463443202565552113585532355658877468999999998579998389987
Q ss_pred CCCCCCCC--CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCE
Q ss_conf 57647454--4213781002005786178668999889999999970888662645423889852661036787505880
Q gi|254780317|r 205 GKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGI 282 (366)
Q Consensus 205 GrvyR~d~--D~tH~~~FhQ~egl~v~~~i~~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~~ 282 (366)
|||||+|+ |+||+|+|||+||+++|++++|.|||++++.|++++++ .++++|++++|||||+||.|++|+|..|
T Consensus 231 GrVFR~D~~~D~tH~~~fhQleGlivg~~vdf~dLKg~le~lL~~Lg~-~~~k~r~~~s~~Pf~hPg~ea~V~~~~~--- 306 (648)
T 2odr_B 231 DRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGF-TNFKFIPDEKKSKYYTPETQTEVYAYHP--- 306 (648)
T ss_dssp EEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTC-CCEEEEECTTCCTTBCTTCCEEEEEEET---
T ss_pred EEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCEEEEEEEEEC---
T ss_conf 778737874424357620047899977876889999999999999678-8738996567789989911589999816---
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHCC
Q ss_conf 42246883489845756388899856988000379963134469979973897058766358
Q gi|254780317|r 283 IKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGAD 344 (366)
Q Consensus 283 ~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~~~~~d 344 (366)
++++||||+||||+||+||+++||| |+|||||||||||||++|||+|||+||...
T Consensus 307 ----~~~~WlEIgg~G~vHP~VLk~~GId---~~V~AFGLGLERLAMlk~gi~DIR~l~~p~ 361 (648)
T 2odr_B 307 ----KLKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMISGNFADVREMVYPQ 361 (648)
T ss_dssp ----TTTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHHHTTCSCHHHHHCGG
T ss_pred ----CCCEEEEEEECCCCCHHHHHHCCCC---CCEEEEEECHHHHHHHHCCCCHHHHHHCCC
T ss_conf ----7984899980653179999866969---857999963899999873997377760777