HHsearch results for GI: 254780317 and protein with PDBid: 3dsq_A
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=100.00 E-value=3.1e-43 Score=335.43 Aligned_cols=263 Identities=17% Similarity=0.158 Sum_probs=201.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87615899889999999999999999999999999998567666765431000001123212267423899999999999
Q gi|254780317|r 49 LKDLKNLDSQQVSARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCI 128 (366)
Q Consensus 49 lK~Lk~Ls~EeKk~~Gk~iNelK~~Ie~~i~~kk~~L~~~~~~~kl~~E~iDVTLP~~~~~~~~G~~HPItqvi~eI~~I 128 (366)
...|+++..+.+++-++.+|..++.++..+.......... ..+..+.+|...+........|+.||+++++++|+++
T Consensus 7 ~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~ 83 (288)
T 3dsq_A 7 DPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAF---QGIEHQLMSQGKRHLEQLRTVKHRPALLELEEKLAKA 83 (288)
T ss_dssp -CTTCBCCCHHHHHHHHHTTCCSHHHHCCBSSHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9987774024169899875354311611222245547888---7668999860356667653303340999999999999
Q ss_pred HHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH----CCCEEEEEEC
Q ss_conf 987398762372341588988861898877331633127750566655632244676305555430----3631225410
Q gi|254780317|r 129 FMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMES----QDLPIKVIVP 204 (366)
Q Consensus 129 F~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR~m~~----~~pP~~~~~~ 204 (366)
|.++||.++++|.||+. ++|++++.|.+||+|++ +||++ .+.+||+|+||.++|.+.. .++|+|++++
T Consensus 84 ~~~~Gf~eV~tP~i~~~-~~~~~~~~~~~~~~~~~--~~~~~-----~~~~Lrp~~~p~~~~~~~~~~~~~~~p~r~~~i 155 (288)
T 3dsq_A 84 LHQQGFVQVVTPTIITK-SALAKMTIGEDHPLFSQ--VFWLD-----GKKCLRPMLAPNLYTLWRELERLWDKPIRIFEI 155 (288)
T ss_dssp HHTTTCEECCCCSEEEH-HHHHTTSSCC--CCTTT--SCEEE-----TTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred HHHCCCEEEECCCEEEH-HHHHCCCCCCCCCCCCC--EEECC-----CCEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99887989987526522-15534576544330220--47637-----420134357717889999863014798489996
Q ss_pred CCCCCCCC-CCCCCCCCCCCCEEEECCCCC--HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC
Q ss_conf 57647454-421378100200578617866--899988999999997088866264542388985266103678750588
Q gi|254780317|r 205 GKTYRRDS-DSTHSPMFHQIEGLVVSDSAT--IANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDG 281 (366)
Q Consensus 205 GrvyR~d~-D~tH~~~FhQ~egl~v~~~i~--~~~lk~~l~~~~~~~fg~~~~~~r~rp~~fPftePs~Evdv~~~~~~~ 281 (366)
|+|||+|. |++|.|+|||+|+.+++.+.+ ++++.+++..+++++.. ++.+++. +|+++++.++|+.
T Consensus 156 g~vfR~E~~~~~h~~eFtQ~e~~~~~~~~~~~~~~l~~l~~~~l~~~g~-~~~~~~~----~~~~~~~~~~~~~------ 224 (288)
T 3dsq_A 156 GTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGI-REFELVT----ESSVVYGDTVDVM------ 224 (288)
T ss_dssp EEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTC-CCCEEEE----CCCCSSCCCEEEE------
T ss_pred CEEECCCCCCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEE----CCCCCCCEEEECC------
T ss_conf 6255568688886782777315898698899999999999999998599-7787997----0477773078618------
Q ss_pred EEEECCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHC
Q ss_conf 04224688348984575638889985698800037996313446997997389705876635
Q gi|254780317|r 282 IIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGA 343 (366)
Q Consensus 282 ~~~~~~~~~WiEi~g~Gm~~p~vl~~~g~d~~~~~g~AfG~G~eRlaml~~gi~diR~~~~~ 343 (366)
.+|+|+ ||||+||+|+.+.+.++. .|+|||+|+||+||++||++|||.++.+
T Consensus 225 -------~~~~El-~~~~~~~~~~~~~~~~~~--~~~~~g~gierlam~~~g~~dir~~~r~ 276 (288)
T 3dsq_A 225 -------KGDLEL-ASGAMGPHFLDEKWEIFD--PWVGLGFGLERLLMIREGTQHVQSMARS 276 (288)
T ss_dssp -------ETTEEE-EEEEEESCTTTTTTTCCS--CEEEEEEEHHHHHHHHHTCSCGGGGSSC
T ss_pred -------CCEEEE-ECCCCCHHHHHHCCCCCC--CCEEEECCHHHHHHHHCCCCCHHHHHHC
T ss_conf -------966886-068758999986589999--8788735799999987099857776312