HHsearch results for GI: 254780317 and protein with PDBid: 3nem_A
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.78 E-value=2.6e-07 Score=72.86 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HH
Q ss_conf 2389999999999998739876237234158898886189887733163312775056665563224467630555--54
Q gi|254780317|r 115 IHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIR--VM 192 (366)
Q Consensus 115 ~HPItqvi~eI~~IF~~lGF~v~eGPEIEtd~~NFdaLNiP~~HPARdmqDTFyl~~~~~~~~~lLRthTS~vQiR--~m 192 (366)
.-.=++++..|+++|.+-||..++-|-+... .| .-|++..=+-|+ +...-|| +||-+-- .|
T Consensus 137 ~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~--------~~--eg~a~~f~~~~~-----~~~~~L~--~Spel~lk~l~ 199 (438)
T 3nem_A 137 FKIRSSVFKAVRDFFHENGFIEIHTPKIIAT--------AT--EGGTELFPMKYF-----EEDAFLA--QSPQLYKQIMM 199 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESS--------CS--SCSSSCCEEEET-----TEEEEEC--SCSHHHHHHGG
T ss_pred EHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--------CC--CCCCCCCCCCCC-----CCCEEEE--CCHHHHHHHHH
T ss_conf 0688999999999875479679977644244--------66--655444663136-----8875350--38568878876
Q ss_pred HHCCCEEEEEECCCCCCCCC-CCC-CCCCCCCCCEEEEC
Q ss_conf 30363122541057647454-421-37810020057861
Q gi|254780317|r 193 ESQDLPIKVIVPGKTYRRDS-DST-HSPMFHQIEGLVVS 229 (366)
Q Consensus 193 ~~~~pP~~~~~~GrvyR~d~-D~t-H~~~FhQ~egl~v~ 229 (366)
... . =|++.+|||||++. |++ |.++|.|+|-.+..
T Consensus 200 ~~G-~-~rvfei~~~FR~E~~~~~rh~~ef~~~~~~~~~ 236 (438)
T 3nem_A 200 ASG-L-DRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 236 (438)
T ss_dssp GTT-C-CEEEEEEEEECCCSSCCTTCCSEEEEEEEEEES
T ss_pred HCC-C-CCEEEEEEECCCCCCCCCCCCCCEEEEHHHHHH
T ss_conf 514-8-852897330144557775544238870889998