RPSBLAST alignment for GI: 254780317 and conserved domain: TIGR00468
>gnl|CDD|161893 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. Length = 294
Score = 325 bits (836), Expect = 9e-90
Identities = 132/309 (42%), Positives = 200/309 (64%), Gaps = 24/309 (7%)
Query: 45 ISSLLKDLKNLDSQQV-SARGAILNQLKVDISGKISARK-DFIRNQLIFEQISSQSVDVS 102
+ LLK L L ++ A GA++N++K+++ +++ K + + L + ++ ++ DV+
Sbjct: 2 LKDLLKQLGKLTKEETKPALGALINEVKIELEDELTKLKPELEKAGL-WSKLKFETYDVT 60
Query: 103 LPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQ 162
LP + + G +HP+T+VIDE+ IF+ +GF E+G ++ETD++NF ALN P DHPAR
Sbjct: 61 LP--GTKIYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARD 118
Query: 163 MHDTFFVPGIAGGKHKLLRTHTSPVQIRVMESQDLP-IKVIVPGKTYRRDS-DSTHSPMF 220
M DTF++ LLRTHT+ VQ+R ME + P I++ PG+ +R D+ D+TH P F
Sbjct: 119 MQDTFYIK-----DRLLLRTHTTAVQLRTMEENEKPPIRIFSPGRVFRNDTVDATHLPEF 173
Query: 221 HQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSD 280
HQ+EGLV+ + + NL+ LE F K F ++RFRPS+FPFTEPS E+DV C
Sbjct: 174 HQVEGLVIDKNVSFTNLKGFLEEFLKKMFG--ETEIRFRPSYFPFTEPSAEIDVYCW--- 228
Query: 281 GIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREF 340
EG W+E+LG GM P VL +GIDP Y GFAWG+G++R+AMLKYG+ D+R+
Sbjct: 229 ------EGKTWLEVLGAGMFRPEVLEPMGIDPT-YPGFAWGIGIERLAMLKYGIDDIRDL 281
Query: 341 FGADVRWIE 349
+ D+R++
Sbjct: 282 YENDLRFLR 290