RPSBLAST alignment for GI: 254780317 and conserved domain: TIGR00468

>gnl|CDD|161893 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. Length = 294
 Score =  325 bits (836), Expect = 9e-90
 Identities = 132/309 (42%), Positives = 200/309 (64%), Gaps = 24/309 (7%)

Query: 45  ISSLLKDLKNLDSQQV-SARGAILNQLKVDISGKISARK-DFIRNQLIFEQISSQSVDVS 102
           +  LLK L  L  ++   A GA++N++K+++  +++  K +  +  L + ++  ++ DV+
Sbjct: 2   LKDLLKQLGKLTKEETKPALGALINEVKIELEDELTKLKPELEKAGL-WSKLKFETYDVT 60

Query: 103 LPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQ 162
           LP   +  + G +HP+T+VIDE+  IF+ +GF  E+G ++ETD++NF ALN P DHPAR 
Sbjct: 61  LP--GTKIYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARD 118

Query: 163 MHDTFFVPGIAGGKHKLLRTHTSPVQIRVMESQDLP-IKVIVPGKTYRRDS-DSTHSPMF 220
           M DTF++         LLRTHT+ VQ+R ME  + P I++  PG+ +R D+ D+TH P F
Sbjct: 119 MQDTFYIK-----DRLLLRTHTTAVQLRTMEENEKPPIRIFSPGRVFRNDTVDATHLPEF 173

Query: 221 HQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSD 280
           HQ+EGLV+  + +  NL+  LE F K  F     ++RFRPS+FPFTEPS E+DV C    
Sbjct: 174 HQVEGLVIDKNVSFTNLKGFLEEFLKKMFG--ETEIRFRPSYFPFTEPSAEIDVYCW--- 228

Query: 281 GIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREF 340
                 EG  W+E+LG GM  P VL  +GIDP  Y GFAWG+G++R+AMLKYG+ D+R+ 
Sbjct: 229 ------EGKTWLEVLGAGMFRPEVLEPMGIDPT-YPGFAWGIGIERLAMLKYGIDDIRDL 281

Query: 341 FGADVRWIE 349
           +  D+R++ 
Sbjct: 282 YENDLRFLR 290