RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus Liberibacter asiaticus str. psy62] (366 letters) >gnl|CDD|30366 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]. Length = 335 Score = 387 bits (995), Expect = e-108 Identities = 153/345 (44%), Positives = 219/345 (63%), Gaps = 18/345 (5%) Query: 10 EVERIRSSLYNSIASVTD-MDSLNAIRVATLGRKGSISSLLKDLKNL-DSQQVSARGAIL 67 + R+ +I +D + +L ++V LG+KG ++ LLK L L ++ GA++ Sbjct: 5 ALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALI 64 Query: 68 NQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTC 127 N+LK ++ I+ + ++E+++ + +DV+LP + G +HP+TQ I+E+ Sbjct: 65 NELKKEVEDAITELTPELEAAGLWERLAFEKIDVTLP--GRRIYPGSLHPLTQTIEEIED 122 Query: 128 IFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPV 187 IF+ MGF EG +IETD+YNF ALN P DHPAR M DTF++ + LLRTHTSPV Sbjct: 123 IFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLK--DDREKLLLRTHTSPV 180 Query: 188 QIRVMESQ-DLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFC 245 Q R + +PIK+ PG+ YR D+ D+THSP FHQIEGLVV + + A+L+ LE F Sbjct: 181 QARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFA 240 Query: 246 KSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVL 305 K FF +++RFRPS+FPFTEPS EVDV C W+EILGCGMV P VL Sbjct: 241 KKFFGED-VKVRFRPSYFPFTEPSAEVDVYC---------PGCGGWLEILGCGMVHPNVL 290 Query: 306 RGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEH 350 VGIDP+ Y GFA+G+GL+R+AMLKYG+PD+R+ + D+R++ Sbjct: 291 EAVGIDPEEYSGFAFGLGLERLAMLKYGIPDIRDLYENDLRFLRQ 335 >gnl|CDD|144850 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. Length = 243 Score = 355 bits (913), Expect = 1e-98 Identities = 122/256 (47%), Positives = 170/256 (66%), Gaps = 15/256 (5%) Query: 98 SVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDD 157 DV+LP G +HP+T+V++E+ IF+ MGF EG ++E+D+YNF ALN P D Sbjct: 1 PYDVTLPG--RRIEPGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQD 58 Query: 158 HPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM-ESQDLPIKVIVPGKTYRRDS-DST 215 HPAR M DTF++ + LLRTHT+PVQ R + E PIK+ G+ +RRD D+T Sbjct: 59 HPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTLAEKNKPPIKIFSIGRVFRRDQVDAT 118 Query: 216 HSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVR 275 H P FHQ+EGLVV ++ + A+L+ VLE F + FF +++RFRPS+FPFTEPS EVDV Sbjct: 119 HLPEFHQVEGLVVDENVSFADLKGVLEEFLRKFFGF-EVKVRFRPSYFPFTEPSAEVDVY 177 Query: 276 CSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMP 335 C +G W+EI G GMV P VL VGID + Y GFA+G+G++R+AMLKYG+ Sbjct: 178 C---------CKGGGWIEIGGAGMVHPNVLEAVGID-EDYPGFAFGLGVERLAMLKYGID 227 Query: 336 DVREFFGADVRWIEHY 351 D+R+ + D+R++ + Sbjct: 228 DIRDLYENDLRFLRQF 243 >gnl|CDD|29807 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.. Length = 218 Score = 306 bits (785), Expect = 7e-84 Identities = 122/232 (52%), Positives = 151/232 (65%), Gaps = 15/232 (6%) Query: 116 HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGG 175 HP+ +VI+E+ IF+ MGF EG ++ETD+YNF ALN P DHPAR M DTF+ I Sbjct: 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFY---INDP 57 Query: 176 KHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATI 234 LLRTHTS VQ R + PI++ G+ YR D D+TH P FHQIEGLVV T Sbjct: 58 ARLLLRTHTSAVQARALAKLKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTF 117 Query: 235 ANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEI 294 A+L+ LE F K F ++RFRPS+FPFTEPSFEVDV C W+EI Sbjct: 118 ADLKGTLEEFAKELFG-PITKVRFRPSYFPFTEPSFEVDVYC---------PGCLGWLEI 167 Query: 295 LGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVR 346 LGCGMV P VL GID + Y GFA+G+GL+R+AMLKYG+PD+R F+ D+R Sbjct: 168 LGCGMVRPEVLENAGIDEE-YSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218 >gnl|CDD|37994 KOG2783, KOG2783, KOG2783, Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 436 Score = 134 bits (338), Expect = 4e-32 Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 67/296 (22%) Query: 111 HRGRIHPVT----QVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDT 166 H+ HP+ ++ D + ++ E S + T Y NF +L FP DH +R DT Sbjct: 67 HQKESHPLGILRQRIEDYFYKTYRNLFSIFENESPVVTTYQNFDSLLFPADHVSRSKSDT 126 Query: 167 FFVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEG 225 ++V LR HTS Q + Q +V G YRRD DSTH P+FHQ+EG Sbjct: 127 YYV-----NHTHCLRAHTSAHQHELF--QKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEG 179 Query: 226 LVV------------------------------------SDSATIA---NLRWVLESFCK 246 + + + AT +L+ LE C Sbjct: 180 VRLWSKDELFGKKPDGKNVAELFSGSSATLRSPNKQEKHTLEATKLAEQHLKQTLEGLCD 239 Query: 247 SFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLR 306 F ++ R+ ++FPFT PS+E+++ F EW+E+LGCG++ R+L+ Sbjct: 240 ELFG-KEVEYRWVDAYFPFTHPSWELEI--YFKG---------EWLEVLGCGVMRQRLLK 287 Query: 307 GVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPPLF 362 G++ I G+A+G+GL+R+AML + +PD+R F+ D R+++ FSP I P F Sbjct: 288 RAGLNNYI--GWAFGLGLERLAMLLFDIPDIRLFWSFDERFLKQ--FSPGKIEPKF 339 >gnl|CDD|37995 KOG2784, KOG2784, KOG2784, Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]. Length = 483 Score = 129 bits (325), Expect = 1e-30 Identities = 83/277 (29%), Positives = 137/277 (49%), Gaps = 53/277 (19%) Query: 109 PCHRGRIHPVTQVIDEVTCIFMDMGFA-LEEGSDIETDYYNFAALNFPDDHPARQMHDTF 167 P G +HP+ +V +E IF +MGF+ + + +E+ ++NF AL P HPAR HDTF Sbjct: 205 PPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTF 264 Query: 168 FV--PGIA----------------GGKHK----------------LLRTHTSPVQIRVM- 192 F+ P + G + +LRTHT+ V R++ Sbjct: 265 FLKDPATSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLY 324 Query: 193 ---ESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248 + P K + +R ++ D+TH FHQ+EG++ T+ +L +L F F Sbjct: 325 RLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEF---F 381 Query: 249 FEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGV 308 ++ + +RF+P++ P+TEPS E+ S+ G+ K W+E+ GM P +L + Sbjct: 382 TKLGATNLRFKPAYNPYTEPSMEIF---SYHHGLFK------WVEVGNSGMFRPEMLLPM 432 Query: 309 GIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADV 345 G+ D+ AWG+ L+R M+KYG+ ++R G V Sbjct: 433 GLPMDV-VVLAWGLSLERPTMIKYGIQNIRWLKGHKV 468 >gnl|CDD|111764 pfam02912, Phe_tRNA-synt_N, Aminoacyl tRNA synthetase class II, N-terminal domain. Length = 73 Score = 63.7 bits (156), Expect = 8e-11 Identities = 21/72 (29%), Positives = 40/72 (55%) Query: 23 ASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARK 82 A+ +D+ +L AIRV LG+KG ++ LLK L L ++ GA++N+ K + + +K Sbjct: 1 AAASDLKALEAIRVKYLGKKGPLTELLKGLGKLSPEERPKVGALINEAKEAVEEALEEKK 60 Query: 83 DFIRNQLIFEQI 94 + + ++ Sbjct: 61 AALEEAELNARL 72 >gnl|CDD|32207 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]. Length = 536 Score = 54.2 bits (130), Expect = 5e-08 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 28/180 (15%) Query: 191 VMESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248 +++ +D P+K+ + +RR+ D++H +H +VV + T+ + + V E + F Sbjct: 200 ILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 Query: 249 -FEVSSLQMRFRPS------FFPFTEP---SFEVDVRCSFSDGIIKFDEGTEWMEILGCG 298 FE + RFRP + P T+ ++ + S W+EI G Sbjct: 260 GFE----KFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEK------YSDGWIEIATFG 309 Query: 299 MVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDI 358 + P L GID Y G+G++R+AM+ +G DVR I + S DI Sbjct: 310 LYSPIALAEYGID---YPVMNLGLGVERLAMILHGADDVRSMVYPQ---IYEWRLSDRDI 363 >gnl|CDD|29821 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.. Length = 322 Score = 32.1 bits (73), Expect = 0.27 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 18/66 (27%) Query: 292 MEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLKYG 333 EI+G D L + G+DP+ ++ + +G+GL+R+ M G Sbjct: 248 GEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLG 307 Query: 334 MPDVRE 339 + ++RE Sbjct: 308 LDNIRE 313 >gnl|CDD|30367 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]. Length = 435 Score = 30.5 bits (69), Expect = 0.65 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 18/68 (26%) Query: 290 EWMEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLK 331 EI+G D +L + G+DP+ Y+ + +G+GL+R+ M Sbjct: 355 GGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYI 414 Query: 332 YGMPDVRE 339 G+ ++RE Sbjct: 415 LGLDNIRE 422 >gnl|CDD|143920 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). Length = 341 Score = 29.9 bits (68), Expect = 1.3 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 320 WGMGLDRIAMLKYGMPDVRE 339 G+GLDR+ ML G+ +RE Sbjct: 313 IGLGLDRLVMLLTGLESIRE 332 >gnl|CDD|37422 KOG2211, KOG2211, KOG2211, Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]. Length = 797 Score = 29.2 bits (65), Expect = 1.6 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 10/98 (10%) Query: 10 EVERIRS---SLYNSIASVTDMDSLNAIRVAT--LGRKGSISSLLKDLKNL-DSQQVSAR 63 E++RI++ Y I T + + + VA L R G L K L +L S V A Sbjct: 129 EIKRIKNDNKEPYKIIWLKTMVLT--RLHVAENLLRRSGRALELSKKLASLNSSMVVDAT 186 Query: 64 GA--ILNQLKVDISGKISARKDFIRNQLIFEQISSQSV 99 A LN+L + + D I +L+F SS V Sbjct: 187 RAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSSPEV 224 >gnl|CDD|37096 KOG1885, KOG1885, KOG1885, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]. Length = 560 Score = 29.1 bits (65), Expect = 1.9 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 320 WGMGLDRIAMLKYGMPDVRE--FFGA 343 WGMG+DR+ ML ++RE F A Sbjct: 528 WGMGIDRLVMLLTDSNNIREVLLFPA 553 >gnl|CDD|31383 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]. Length = 502 Score = 28.2 bits (63), Expect = 3.2 Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 320 WGMGLDRIAMLKYGMPDVRE 339 G+G+DR+ ML P +R+ Sbjct: 472 LGIGIDRLVMLLTNSPSIRD 491 >gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.. Length = 778 Score = 27.9 bits (63), Expect = 4.4 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 294 ILGCGMVDPRVLRGVGIDPDIYQ---GFAWGMGLDRIA--MLKYGMP 335 +LG G V R LR +GI P +Y G A +GL+RI M + G+ Sbjct: 233 LLGIGGV--RALRALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLS 277 >gnl|CDD|37720 KOG2509, KOG2509, KOG2509, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 455 Score = 27.6 bits (61), Expect = 5.2 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 21/104 (20%) Query: 172 IAGGKHKLLRTHTSPVQI------RVMESQDLPIKVIVPGKTYRRDSDST---------- 215 + GG K L T+ + +E LPIK + + +R ++ S Sbjct: 235 LDGGDEKYL-IATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRV 293 Query: 216 HSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFR 259 H F ++E V++ + + + + F++ SL + +R Sbjct: 294 HQ--FEKVEQFVITGPEDSWEMLEEMINNQEEFYQ--SLGLPYR 333 >gnl|CDD|35691 KOG0470, KOG0470, KOG0470, 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]. Length = 757 Score = 27.6 bits (61), Expect = 5.7 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 9/51 (17%) Query: 309 GIDPDIY-----QGFAWGMGLDRIAMLKYGMPDVREFFGADVR-WIEHYGF 353 GID +Y +G+ + Y P V F +++R W+ Y Sbjct: 349 GIDNSVYFHSGPRGYHN---SWCSRLFNYNHPVVLRFLLSNLRWWVTEYHV 396 >gnl|CDD|38725 KOG3516, KOG3516, KOG3516, Neurexin IV [Signal transduction mechanisms]. Length = 1306 Score = 27.2 bits (60), Expect = 6.6 Identities = 10/39 (25%), Positives = 16/39 (41%) Query: 252 SSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTE 290 SSL RF + + + SDG++ EG + Sbjct: 186 SSLLYRFHRKLMSSLKDVISLKFKTMQSDGVLLHGEGQQ 224 >gnl|CDD|35776 KOG0556, KOG0556, KOG0556, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 533 Score = 26.8 bits (59), Expect = 8.4 Identities = 8/20 (40%), Positives = 15/20 (75%) Query: 321 GMGLDRIAMLKYGMPDVREF 340 G+GL+R+ ML G+ ++R+ Sbjct: 502 GIGLERVVMLYLGLNNIRKT 521 >gnl|CDD|34907 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]. Length = 283 Score = 26.9 bits (59), Expect = 8.6 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 13/88 (14%) Query: 68 NQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTC 127 L S + ++ +L ++QI I + + I E+ Sbjct: 162 ESLSSLGSQQTLQQQGLSNEELEYQQILITE------------RDEEIKNLARGIYELNE 209 Query: 128 IFMDMGFAL-EEGSDIETDYYNFAALNF 154 IF D+G + E+G ++ +N + Sbjct: 210 IFRDLGSLVGEQGELVDRIDFNIENTSD 237 >gnl|CDD|37654 KOG2443, KOG2443, KOG2443, Uncharacterized conserved protein [Function unknown]. Length = 362 Score = 26.8 bits (59), Expect = 8.6 Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 184 TSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPM 219 + V + V S D PIK++ P K +++ M Sbjct: 217 GTNVMVTVATSLDAPIKLVFPQKLLFPGLTASNFSM 252 >gnl|CDD|29820 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.. Length = 329 Score = 27.1 bits (60), Expect = 9.2 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 320 WGMGLDRIAMLKYGMPDVRE 339 G+G+DR+ ML +R+ Sbjct: 301 LGIGIDRLVMLLTDSNSIRD 320 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.139 0.420 Gapped Lambda K H 0.267 0.0797 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,676,378 Number of extensions: 256126 Number of successful extensions: 536 Number of sequences better than 10.0: 1 Number of HSP's gapped: 510 Number of HSP's successfully gapped: 25 Length of query: 366 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 271 Effective length of database: 4,210,882 Effective search space: 1141149022 Effective search space used: 1141149022 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.0 bits)