RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase,
alpha subunit [Candidatus Liberibacter asiaticus str. psy62]
         (366 letters)



>gnl|CDD|30366 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
           [Translation, ribosomal structure and biogenesis].
          Length = 335

 Score =  387 bits (995), Expect = e-108
 Identities = 153/345 (44%), Positives = 219/345 (63%), Gaps = 18/345 (5%)

Query: 10  EVERIRSSLYNSIASVTD-MDSLNAIRVATLGRKGSISSLLKDLKNL-DSQQVSARGAIL 67
            + R+      +I   +D + +L  ++V  LG+KG ++ LLK L  L   ++    GA++
Sbjct: 5   ALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALI 64

Query: 68  NQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTC 127
           N+LK ++   I+     +    ++E+++ + +DV+LP      + G +HP+TQ I+E+  
Sbjct: 65  NELKKEVEDAITELTPELEAAGLWERLAFEKIDVTLP--GRRIYPGSLHPLTQTIEEIED 122

Query: 128 IFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPV 187
           IF+ MGF   EG +IETD+YNF ALN P DHPAR M DTF++      +  LLRTHTSPV
Sbjct: 123 IFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLK--DDREKLLLRTHTSPV 180

Query: 188 QIRVMESQ-DLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFC 245
           Q R +     +PIK+  PG+ YR D+ D+THSP FHQIEGLVV  + + A+L+  LE F 
Sbjct: 181 QARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFA 240

Query: 246 KSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVL 305
           K FF    +++RFRPS+FPFTEPS EVDV C              W+EILGCGMV P VL
Sbjct: 241 KKFFGED-VKVRFRPSYFPFTEPSAEVDVYC---------PGCGGWLEILGCGMVHPNVL 290

Query: 306 RGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEH 350
             VGIDP+ Y GFA+G+GL+R+AMLKYG+PD+R+ +  D+R++  
Sbjct: 291 EAVGIDPEEYSGFAFGLGLERLAMLKYGIPDIRDLYENDLRFLRQ 335


>gnl|CDD|144850 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
            Other tRNA synthetase sub-families are too dissimilar
           to be included. This family includes only
           phenylalanyl-tRNA synthetases. This is the core
           catalytic domain.
          Length = 243

 Score =  355 bits (913), Expect = 1e-98
 Identities = 122/256 (47%), Positives = 170/256 (66%), Gaps = 15/256 (5%)

Query: 98  SVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDD 157
             DV+LP        G +HP+T+V++E+  IF+ MGF   EG ++E+D+YNF ALN P D
Sbjct: 1   PYDVTLPG--RRIEPGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQD 58

Query: 158 HPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVM-ESQDLPIKVIVPGKTYRRDS-DST 215
           HPAR M DTF++      +  LLRTHT+PVQ R + E    PIK+   G+ +RRD  D+T
Sbjct: 59  HPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTLAEKNKPPIKIFSIGRVFRRDQVDAT 118

Query: 216 HSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVR 275
           H P FHQ+EGLVV ++ + A+L+ VLE F + FF    +++RFRPS+FPFTEPS EVDV 
Sbjct: 119 HLPEFHQVEGLVVDENVSFADLKGVLEEFLRKFFGF-EVKVRFRPSYFPFTEPSAEVDVY 177

Query: 276 CSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMP 335
           C          +G  W+EI G GMV P VL  VGID + Y GFA+G+G++R+AMLKYG+ 
Sbjct: 178 C---------CKGGGWIEIGGAGMVHPNVLEAVGID-EDYPGFAFGLGVERLAMLKYGID 227

Query: 336 DVREFFGADVRWIEHY 351
           D+R+ +  D+R++  +
Sbjct: 228 DIRDLYENDLRFLRQF 243


>gnl|CDD|29807 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
           alpha chain catalytic core domain. PheRS belongs to
           class II aminoacyl-tRNA synthetases (aaRS) based upon
           its structure and the presence of three characteristic
           sequence motifs. This domain is primarily responsible
           for ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. While class II aaRSs generally
           aminoacylate the 3'-OH ribose of the appropriate tRNA,
           PheRS is an exception in that it attaches the amino acid
           at the 2'-OH group, like class I aaRSs.  PheRS is an
           alpha-2/ beta-2 tetramer..
          Length = 218

 Score =  306 bits (785), Expect = 7e-84
 Identities = 122/232 (52%), Positives = 151/232 (65%), Gaps = 15/232 (6%)

Query: 116 HPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGG 175
           HP+ +VI+E+  IF+ MGF   EG ++ETD+YNF ALN P DHPAR M DTF+   I   
Sbjct: 1   HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFY---INDP 57

Query: 176 KHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATI 234
              LLRTHTS VQ R +     PI++   G+ YR D  D+TH P FHQIEGLVV    T 
Sbjct: 58  ARLLLRTHTSAVQARALAKLKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTF 117

Query: 235 ANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEI 294
           A+L+  LE F K  F     ++RFRPS+FPFTEPSFEVDV C              W+EI
Sbjct: 118 ADLKGTLEEFAKELFG-PITKVRFRPSYFPFTEPSFEVDVYC---------PGCLGWLEI 167

Query: 295 LGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVR 346
           LGCGMV P VL   GID + Y GFA+G+GL+R+AMLKYG+PD+R F+  D+R
Sbjct: 168 LGCGMVRPEVLENAGIDEE-YSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218


>gnl|CDD|37994 KOG2783, KOG2783, KOG2783, Phenylalanyl-tRNA synthetase
           [Translation, ribosomal structure and biogenesis].
          Length = 436

 Score =  134 bits (338), Expect = 4e-32
 Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 67/296 (22%)

Query: 111 HRGRIHPVT----QVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDT 166
           H+   HP+     ++ D     + ++    E  S + T Y NF +L FP DH +R   DT
Sbjct: 67  HQKESHPLGILRQRIEDYFYKTYRNLFSIFENESPVVTTYQNFDSLLFPADHVSRSKSDT 126

Query: 167 FFVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEG 225
           ++V          LR HTS  Q  +   Q      +V G  YRRD  DSTH P+FHQ+EG
Sbjct: 127 YYV-----NHTHCLRAHTSAHQHELF--QKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEG 179

Query: 226 LVV------------------------------------SDSATIA---NLRWVLESFCK 246
           + +                                    +  AT     +L+  LE  C 
Sbjct: 180 VRLWSKDELFGKKPDGKNVAELFSGSSATLRSPNKQEKHTLEATKLAEQHLKQTLEGLCD 239

Query: 247 SFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLR 306
             F    ++ R+  ++FPFT PS+E+++   F           EW+E+LGCG++  R+L+
Sbjct: 240 ELFG-KEVEYRWVDAYFPFTHPSWELEI--YFKG---------EWLEVLGCGVMRQRLLK 287

Query: 307 GVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPPLF 362
             G++  I  G+A+G+GL+R+AML + +PD+R F+  D R+++   FSP  I P F
Sbjct: 288 RAGLNNYI--GWAFGLGLERLAMLLFDIPDIRLFWSFDERFLKQ--FSPGKIEPKF 339


>gnl|CDD|37995 KOG2784, KOG2784, KOG2784, Phenylalanyl-tRNA synthetase, beta
           subunit [Translation, ribosomal structure and
           biogenesis].
          Length = 483

 Score =  129 bits (325), Expect = 1e-30
 Identities = 83/277 (29%), Positives = 137/277 (49%), Gaps = 53/277 (19%)

Query: 109 PCHRGRIHPVTQVIDEVTCIFMDMGFA-LEEGSDIETDYYNFAALNFPDDHPARQMHDTF 167
           P   G +HP+ +V +E   IF +MGF+ +   + +E+ ++NF AL  P  HPAR  HDTF
Sbjct: 205 PPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTF 264

Query: 168 FV--PGIA----------------GGKHK----------------LLRTHTSPVQIRVM- 192
           F+  P  +                 G +                 +LRTHT+ V  R++ 
Sbjct: 265 FLKDPATSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLY 324

Query: 193 ---ESQDLPIKVIVPGKTYRRDS-DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248
              +    P K     + +R ++ D+TH   FHQ+EG++     T+ +L  +L  F   F
Sbjct: 325 RLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEF---F 381

Query: 249 FEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGV 308
            ++ +  +RF+P++ P+TEPS E+    S+  G+ K      W+E+   GM  P +L  +
Sbjct: 382 TKLGATNLRFKPAYNPYTEPSMEIF---SYHHGLFK------WVEVGNSGMFRPEMLLPM 432

Query: 309 GIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADV 345
           G+  D+    AWG+ L+R  M+KYG+ ++R   G  V
Sbjct: 433 GLPMDV-VVLAWGLSLERPTMIKYGIQNIRWLKGHKV 468


>gnl|CDD|111764 pfam02912, Phe_tRNA-synt_N, Aminoacyl tRNA synthetase class II,
          N-terminal domain. 
          Length = 73

 Score = 63.7 bits (156), Expect = 8e-11
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query: 23 ASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARK 82
          A+ +D+ +L AIRV  LG+KG ++ LLK L  L  ++    GA++N+ K  +   +  +K
Sbjct: 1  AAASDLKALEAIRVKYLGKKGPLTELLKGLGKLSPEERPKVGALINEAKEAVEEALEEKK 60

Query: 83 DFIRNQLIFEQI 94
            +    +  ++
Sbjct: 61 AALEEAELNARL 72


>gnl|CDD|32207 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
           (archaeal type) [Translation, ribosomal structure and
           biogenesis].
          Length = 536

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 28/180 (15%)

Query: 191 VMESQDLPIKVIVPGKTYRRDS--DSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSF 248
           +++ +D P+K+    + +RR+   D++H   +H    +VV +  T+ + + V E   + F
Sbjct: 200 ILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259

Query: 249 -FEVSSLQMRFRPS------FFPFTEP---SFEVDVRCSFSDGIIKFDEGTEWMEILGCG 298
            FE    + RFRP       + P T+    ++   +  S             W+EI   G
Sbjct: 260 GFE----KFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEK------YSDGWIEIATFG 309

Query: 299 MVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDI 358
           +  P  L   GID   Y     G+G++R+AM+ +G  DVR         I  +  S  DI
Sbjct: 310 LYSPIALAEYGID---YPVMNLGLGVERLAMILHGADDVRSMVYPQ---IYEWRLSDRDI 363


>gnl|CDD|29821 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II
           core domain.  Assignment to class II aminoacyl-tRNA
           synthetases (aaRS) based upon its structure and the
           presence of three characteristic sequence motifs in the
           core domain. This family includes AsnRS as well as a
           subgroup of AspRS.  AsnRS and AspRS are homodimers,
           which attach either asparagine or aspartate to the 3'OH
           group of ribose of the appropriate tRNA.  While archaea
           lack asnRS, they possess a non-discriminating aspRS,
           which can mischarge Asp-tRNA with Asn. Subsequently, a
           tRNA-dependent aspartate amidotransferase converts the
           bound aspartate to asparagine. The catalytic core domain
           is primarily responsible for the ATP-dependent formation
           of the enzyme bound aminoacyl-adenylate..
          Length = 322

 Score = 32.1 bits (73), Expect = 0.27
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 18/66 (27%)

Query: 292 MEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLKYG 333
            EI+G      D   L    +  G+DP+ ++ +             +G+GL+R+ M   G
Sbjct: 248 GEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLG 307

Query: 334 MPDVRE 339
           + ++RE
Sbjct: 308 LDNIRE 313


>gnl|CDD|30367 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
           ribosomal structure and biogenesis].
          Length = 435

 Score = 30.5 bits (69), Expect = 0.65
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 18/68 (26%)

Query: 290 EWMEILGCGMV--DPRVL----RGVGIDPDIYQGF------------AWGMGLDRIAMLK 331
              EI+G      D  +L    +  G+DP+ Y+ +             +G+GL+R+ M  
Sbjct: 355 GGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYI 414

Query: 332 YGMPDVRE 339
            G+ ++RE
Sbjct: 415 LGLDNIRE 422


>gnl|CDD|143920 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
          Length = 341

 Score = 29.9 bits (68), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 320 WGMGLDRIAMLKYGMPDVRE 339
            G+GLDR+ ML  G+  +RE
Sbjct: 313 IGLGLDRLVMLLTGLESIRE 332


>gnl|CDD|37422 KOG2211, KOG2211, KOG2211, Predicted Golgi transport complex 1
           protein [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 797

 Score = 29.2 bits (65), Expect = 1.6
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 10  EVERIRS---SLYNSIASVTDMDSLNAIRVAT--LGRKGSISSLLKDLKNL-DSQQVSAR 63
           E++RI++     Y  I   T + +   + VA   L R G    L K L +L  S  V A 
Sbjct: 129 EIKRIKNDNKEPYKIIWLKTMVLT--RLHVAENLLRRSGRALELSKKLASLNSSMVVDAT 186

Query: 64  GA--ILNQLKVDISGKISARKDFIRNQLIFEQISSQSV 99
            A   LN+L   +     +  D I  +L+F   SS  V
Sbjct: 187 RAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSSPEV 224


>gnl|CDD|37096 KOG1885, KOG1885, KOG1885, Lysyl-tRNA synthetase (class II)
           [Translation, ribosomal structure and biogenesis].
          Length = 560

 Score = 29.1 bits (65), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 320 WGMGLDRIAMLKYGMPDVRE--FFGA 343
           WGMG+DR+ ML     ++RE   F A
Sbjct: 528 WGMGIDRLVMLLTDSNNIREVLLFPA 553


>gnl|CDD|31383 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
           ribosomal structure and biogenesis].
          Length = 502

 Score = 28.2 bits (63), Expect = 3.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 320 WGMGLDRIAMLKYGMPDVRE 339
            G+G+DR+ ML    P +R+
Sbjct: 472 LGIGIDRLVMLLTNSPSIRD 491


>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
           closely related to the oligosaccharide phosphorylase
           domain family and other unidentified sequences.
           Oligosaccharide phosphorylase catalyzes the breakdown of
           oligosaccharides into glucose-1-phosphate units. They
           are important allosteric enzymes in carbohydrate
           metabolism. The members of this family are found in
           bacteria and Archaea..
          Length = 778

 Score = 27.9 bits (63), Expect = 4.4
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 294 ILGCGMVDPRVLRGVGIDPDIYQ---GFAWGMGLDRIA--MLKYGMP 335
           +LG G V  R LR +GI P +Y    G A  +GL+RI   M + G+ 
Sbjct: 233 LLGIGGV--RALRALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLS 277


>gnl|CDD|37720 KOG2509, KOG2509, KOG2509, Seryl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 455

 Score = 27.6 bits (61), Expect = 5.2
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 172 IAGGKHKLLRTHTSPVQI------RVMESQDLPIKVIVPGKTYRRDSDST---------- 215
           + GG  K L   T+   +        +E   LPIK +   + +R ++ S           
Sbjct: 235 LDGGDEKYL-IATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRV 293

Query: 216 HSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFR 259
           H   F ++E  V++       +   + +  + F++  SL + +R
Sbjct: 294 HQ--FEKVEQFVITGPEDSWEMLEEMINNQEEFYQ--SLGLPYR 333


>gnl|CDD|35691 KOG0470, KOG0470, KOG0470, 1,4-alpha-glucan branching enzyme/starch
           branching enzyme II [Carbohydrate transport and
           metabolism].
          Length = 757

 Score = 27.6 bits (61), Expect = 5.7
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 9/51 (17%)

Query: 309 GIDPDIY-----QGFAWGMGLDRIAMLKYGMPDVREFFGADVR-WIEHYGF 353
           GID  +Y     +G+          +  Y  P V  F  +++R W+  Y  
Sbjct: 349 GIDNSVYFHSGPRGYHN---SWCSRLFNYNHPVVLRFLLSNLRWWVTEYHV 396


>gnl|CDD|38725 KOG3516, KOG3516, KOG3516, Neurexin IV [Signal transduction
           mechanisms].
          Length = 1306

 Score = 27.2 bits (60), Expect = 6.6
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 252 SSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTE 290
           SSL  RF        +    +  +   SDG++   EG +
Sbjct: 186 SSLLYRFHRKLMSSLKDVISLKFKTMQSDGVLLHGEGQQ 224


>gnl|CDD|35776 KOG0556, KOG0556, KOG0556, Aspartyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 533

 Score = 26.8 bits (59), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 321 GMGLDRIAMLKYGMPDVREF 340
           G+GL+R+ ML  G+ ++R+ 
Sbjct: 502 GIGLERVVMLYLGLNNIRKT 521


>gnl|CDD|34907 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
           trafficking and secretion].
          Length = 283

 Score = 26.9 bits (59), Expect = 8.6
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 68  NQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTC 127
             L    S +   ++     +L ++QI                    I  + + I E+  
Sbjct: 162 ESLSSLGSQQTLQQQGLSNEELEYQQILITE------------RDEEIKNLARGIYELNE 209

Query: 128 IFMDMGFAL-EEGSDIETDYYNFAALNF 154
           IF D+G  + E+G  ++   +N    + 
Sbjct: 210 IFRDLGSLVGEQGELVDRIDFNIENTSD 237


>gnl|CDD|37654 KOG2443, KOG2443, KOG2443, Uncharacterized conserved protein
           [Function unknown].
          Length = 362

 Score = 26.8 bits (59), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 184 TSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPM 219
            + V + V  S D PIK++ P K       +++  M
Sbjct: 217 GTNVMVTVATSLDAPIKLVFPQKLLFPGLTASNFSM 252


>gnl|CDD|29820 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
           domain.  Class II LysRS is a dimer which attaches a
           lysine to the 3' OH group of ribose of the appropriate
           tRNA. Its assignment to class II aaRS is based upon its
           structure and the presence of three characteristic
           sequence motifs in the core domain. It is found in
           eukaryotes as well as some prokaryotes and archaea.
           However, LysRS belongs to class I aaRS's  in some
           prokaryotes and archaea. The catalytic core domain is
           primarily responsible for the ATP-dependent formation of
           the enzyme bound aminoacyl-adenylate..
          Length = 329

 Score = 27.1 bits (60), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 320 WGMGLDRIAMLKYGMPDVRE 339
            G+G+DR+ ML      +R+
Sbjct: 301 LGIGIDRLVMLLTDSNSIRD 320


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,676,378
Number of extensions: 256126
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 25
Length of query: 366
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,210,882
Effective search space: 1141149022
Effective search space used: 1141149022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)