BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus Liberibacter asiaticus str. psy62] (366 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 366 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/366 (100%), Positives = 366/366 (100%) Query: 1 MTECNVFEDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQV 60 MTECNVFEDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQV Sbjct: 1 MTECNVFEDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQV 60 Query: 61 SARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQ 120 SARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQ Sbjct: 61 SARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQ 120 Query: 121 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLL 180 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLL Sbjct: 121 VIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLL 180 Query: 181 RTHTSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPMFHQIEGLVVSDSATIANLRWV 240 RTHTSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPMFHQIEGLVVSDSATIANLRWV Sbjct: 181 RTHTSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPMFHQIEGLVVSDSATIANLRWV 240 Query: 241 LESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMV 300 LESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMV Sbjct: 241 LESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMV 300 Query: 301 DPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPP 360 DPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPP Sbjct: 301 DPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPP 360 Query: 361 LFSRLA 366 LFSRLA Sbjct: 361 LFSRLA 366 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 26.6 bits (57), Expect = 0.70, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 8/34 (23%) Query: 314 IYQGFAWGM--------GLDRIAMLKYGMPDVRE 339 +Y+ F GM G+DRI ML G +VRE Sbjct: 525 LYRAFQCGMPPHGGIAAGIDRIVMLLLGAKNVRE 558 >gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 400 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 10 EVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQ 69 + + SLY V + A+ +G SL+K + L QQ S +I Sbjct: 219 NIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQW 278 Query: 70 LKVDISGKISARKDF-IRNQLIFE 92 V+ ++ +DF + N+ IFE Sbjct: 279 AAVE---ALNGPQDFVVNNRKIFE 299 >gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 23.9 bits (50), Expect = 4.6, Method: Compositional matrix adjust. Identities = 10/15 (66%), Positives = 11/15 (73%) Query: 140 SDIETDYYNFAALNF 154 S+IET Y NFA NF Sbjct: 158 SEIETGYRNFALANF 172 >gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 321 GMGLDRIAMLKYGMPDVRE 339 G+G+DR+ ML P +R+ Sbjct: 467 GLGIDRLIMLLTNAPSIRD 485 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.139 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 237,877 Number of Sequences: 1233 Number of extensions: 9896 Number of successful extensions: 28 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 8 length of query: 366 length of database: 328,796 effective HSP length: 75 effective length of query: 291 effective length of database: 236,321 effective search space: 68769411 effective search space used: 68769411 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)